Projects: pypi: PyMOL
https://packages.ecosyste.ms/registries/pypi.org/packages/PyMOL
1 version
Latest release: about 2 years ago
5 dependent packages
Science Score: 90/100
Starting Score: 100 points
Bonuses:
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem
Very Likely Science (90)
Papers Mentioning PyMOL 8,266
10.1186/s12915-020-00885-2
Modified base-binding EVE and DCD domains: striking diversity of genomic contexts in prokaryotes and predicted involvement in a variety of cellular processesCited by: 4
Author(s): Ryan T. Bell, Yuri I. Wolf, Eugene V. Koonin
Software Mentions: 1
Published: about 5 years ago
10.1186/s12915-020-00936-8
Native-like membrane models of E. coli polar lipid extract shed light on the importance of lipid composition complexityCited by: 28
Author(s): Kristýna Pluháčková, Andreas Hörner
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12915-016-0313-y
Oligomeric interface modulation causes misregulation of purine 5´-nucleotidase in relapsed leukemiaCited by: 9
Author(s): Aleš Hnı́zda, Jana Škerlová, Milan Fábry, Petr Pachl, Martina Šinalová, Lukáš Vrzal, Petr Man, Petr Novák, P. Řezáčová, Václav Veverka
Software Mentions: 1
Published: about 9 years ago
10.1186/s12915-017-0464-5
Outer membrane protein folding from an energy landscape perspectiveCited by: 55
Author(s): Bob Schiffrin, David J. Brockwell, Sheena E. Radford
Software Mentions: 1
Published: almost 8 years ago
10.1186/s12915-020-00920-2
Crystal structure of the yeast heterodimeric ADAT2/3 deaminaseCited by: 15
Author(s): Xiwen Liu, Ruoyu Chen, Yujie Sun, Ran Chen, Jie Zhou, Qingnan Tian, Xiaoma Tao, Zhang Zhang, Guan‐Zheng Luo, Wei Xie
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12915-020-00896-z
Speciation and adaptive evolution reshape antioxidant enzymatic system diversity across the phylum NematodaCited by: 10
Author(s): Liang Xu, Jian Yang, Meng Xu, Dai Shan, Zhongdao Wu, Dongjuan Yuan
Software Mentions: 1
Published: almost 5 years ago
10.1186/1741-7007-8-134
The nucleotide addition cycle of RNA polymerase is controlled by two molecular hinges in the Bridge Helix domainCited by: 48
Author(s): Robert O. J. Weinzierl
Software Mentions: 1
Published: about 15 years ago
10.1186/1741-7007-8-70
Expansion of ribosomally produced natural products: a nitrile hydratase- and Nif11-related precursor familyCited by: 124
Author(s): Daniel H. Haft, Malay Kumar Basu, Douglas A. Mitchell
Software Mentions: 1
Published: over 15 years ago
10.1186/s12915-017-0446-7
A yeast two-hybrid system for the screening and characterization of small-molecule inhibitors of protein–protein interactions identifies a novel putative Mdm2-binding site in p53Cited by: 28
Author(s): Jin Huei Wong, Mohammad Alfatah, Mei Fang Sin, Hong May Sim, Chandra Verma, David P. Lane, Prakash Arumugam
Software Mentions: 1
Published: about 8 years ago
10.1186/1741-7007-9-7
The activation mechanism of Irga6, an interferon-inducible GTPase contributing to mouse resistance against Toxoplasma gondiiCited by: 28
Author(s): Nikolaus Pawlowski, Aliaksandr Khaminets, Julia P. Hunn, Natasa Papic, Andreas Schmidt, Revathy C. Uthaiah, Rita Lange, Gabriela Vopper, Sascha Martens, Eva Wolf, Jonathan C. Howard
Software Mentions: 1
Published: almost 15 years ago
10.1186/2046-1682-5-13
A minimal ligand binding pocket within a network of correlated mutations identified by multiple sequence and structural analysis of G protein coupled receptorsCited by: 7
Author(s): Subhodeep Moitra, Kalyan Tirupula, Judith Klein‐Seetharaman, Christopher J. Langmead
Software Mentions: 1
Published: over 13 years ago
10.1186/2046-1682-5-2
Protein dynamics at Eph receptor-ligand interfaces as revealed by crystallography, NMR and MD simulationsCited by: 23
Author(s): Haina Qin, Liangzhong Lim, Jianxing Song
Software Mentions: 1
Published: almost 14 years ago
10.1186/1472-6750-13-71
Systematic screening of glycosylation- and trafficking-associated gene knockouts in Saccharomyces cerevisiaeidentifies mutants with improved heterologous exocellulase activity and host secretionCited by: 31
Author(s): Tzi‐Yuan Wang, Chih-Jen Huang, Hsin‐Liang Chen, Po-Chun Ho, Huei-Mien Ke, Hsing-Yi Cho, Sz-Kai Ruan, Kuo-Yen Hung, I-Li Wang, Ya-Wun Cai, Huang‐Mo Sung, Wen-Hsiung Li, Ming-Che Shih
Software Mentions: 1
Published: about 12 years ago
10.1186/s12896-015-0217-x
Defining the complementarities between antibodies and haptens to refine our understanding and aid the prediction of a successful binding interactionCited by: 13
Author(s): Mohammed M. Al Qaraghuli, Soumya Palliyil, Gillian Broadbent, David C. Cullen, Keith A. Charlton, A.J. Porter
Software Mentions: 1
Published: about 10 years ago
10.1186/s12896-018-0420-7
Effects of substrate binding site residue substitutions of xynA from Bacillus amyloliquefaciens on substrate specificityCited by: 10
Author(s): Anil S. Prajapati, V A Pawar, Ketankumar Panchal, Ankit P. Sudhir, Bhaumik R. Dave, Darshan H. Patel, R. B. Subramanian
Software Mentions: 1
Published: almost 8 years ago
10.1186/s12896-019-0520-z
Surface patches on recombinant erythropoietin predict protein solubility: engineering proteins to minimise aggregationCited by: 7
Author(s): Manuel Alejandro Carballo-Amador, Edward A. McKenzie, Alan J. Dickson, Jim Warwicker
Software Mentions: 1
Published: over 6 years ago
10.1186/s12896-015-0214-0
A novel eurythermic and thermostale lipase LipM from Pseudomonas moraviensis M9 and its application in the partial hydrolysis of algal oilCited by: 22
Author(s): Wuyi Yang, Cao Hai, Li Xu, Houjin Zhang, Yunjun Yan
Software Mentions: 1
Published: about 10 years ago
10.1186/s12896-017-0389-7
Conversion of an inactive xylose isomerase into a functional enzyme by co-expression of GroEL-GroES chaperonins in Saccharomyces cerevisiaeCited by: 22
Author(s): Beatriz Temer, Leandro Vieira dos Santos, Victor Augusti Negri, Juliana Pimentel Galhardo, Pedro Henrique Mello Magalhães, Juliana José, Cidnei Marschalk, Thamy Lívia Ribeiro Corrêa, Marcelo Falsarella Carazzolle, Gonçalo Amarante Guimarães Pereira
Software Mentions: 1
Published: about 8 years ago
10.1186/s12896-019-0542-6
Improved the expression level of active transglutaminase by directional increasing copy of mtg gene in Pichia pastorisCited by: 6
Author(s): Xiaoping Song, Changsheng Shao, Yugang Guo, Yajie Wang, Jingjing Cai
Software Mentions: 1
Published: over 6 years ago
10.1186/s12896-021-00701-x
Optimization of expression, purification and secretion of functional recombinant human growth hormone in Escherichia coli using modified staphylococcal protein a signal peptideCited by: 7
Author(s): Garshasb Rigi, Amin Rostami, Habib Ghomi, Gholamreza Ahmadian, V.S. Mirbagheri, Meisam Jeiranikhameneh, Majid Vahed, Sahel Rahimi
Software Mentions: 1
Published: over 4 years ago
10.1186/s12896-016-0310-9
Improvement of alkalophilicity of an alkaline xylanase Xyn11A-LC from Bacillus sp. SN5 by random mutation and Glu135 saturation mutagenesisCited by: 19
Author(s): Wenqin Bai, Yufan Cao, Jun Liu, Qinhong Wang, Zhenhu Jia
Software Mentions: 1
Published: about 9 years ago
10.1186/s12896-019-0553-3
Structure-based engineering of heparinase I with improved specific activity for degrading heparinCited by: 5
Author(s): Chuan Zhang, Baocheng Yang, Wenting Liu, Zhongyuan Li, Yajian Song, Tongcun Zhang, Xue‐Gang Luo
Software Mentions: 1
Published: over 6 years ago
10.1186/s12896-017-0396-8
Production and purification of chimeric HBc virus-like particles carrying influenza virus LAH domain as vaccine candidatesCited by: 22
Author(s): Andris Kazāks, I-Na Lu, Sophie Farinelle, Alex Ramirez, Vincenzo Crescente, Benjamin A. F. Bláha, Olotu W. Ogonah, Tarit Mukhopadhyay, Mapi Perez de Obanos, Alejandro Krimer, Ināra Akopjana, Jānis Bogans, Velta Ose, Anna Kirsteina, Tatjana Kazaka, Nicola J. Stonehouse, David J. Rowlands, Claude P. Muller, Kaspars Tārs, William Rosenberg
Software Mentions: 1
Published: about 8 years ago
10.1186/s12885-016-2108-5
Aberrant KDM5B expression promotes aggressive breast cancer through MALAT1 overexpression and downregulation of hsa-miR-448Cited by: 100
Author(s): Oluwaseun Adebayo Bamodu, Wen Chien Huang, Wei Hwa Lee, Alexander T.H. Wu, Liang Shun Wang, Michael Hsiao, Chi‐Tai Yeh, Tsu Yi Chao
Software Mentions: 1
Published: over 9 years ago
10.1186/s12885-019-6013-6
Parkin gene mutations are not common, but its epigenetic inactivation is a frequent event and predicts poor survival in advanced breast cancer patientsCited by: 13
Author(s): Khushnuma Wahabi, Ahmad Perwez, Shabeena Kamarudheen, Zafar Iqbal Bhat, Anurag Mehta, M. Moshahid Alam Rizvi
Software Mentions: 1
Published: about 6 years ago
10.1186/s12885-019-6477-4
Bag-1 stimulates Bad phosphorylation through activation of Akt and Raf kinases to mediate cell survival in breast cancerCited by: 18
Author(s): Tugba Kizilboga, Emine Arzu Baskale, Jale Yıldız, İzzet Mehmet Akçay, Ebru Zemheri, Nisan Denizce Can, C. Ozden, Salih Demir, Fikret Ezbercı, Gizem Dinler Doğanay
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12885-018-5142-7
KRas4B-PDE6δ complex stabilization by small molecules obtained by virtual screening affects Ras signaling in pancreatic cancerCited by: 18
Author(s): Diana Casique‐Aguirre, Paola Briseño-Díaz, Ponciano García-Gutiérrez, Claudia H. González-De la Rosa, Reyna Sara Quintero-Barceinas, Arturo Rojo-Domı́nguez, Irene Vergara, L. Medina, José Correa‐Basurto, Martiniano Bello, Rosaura Hernández‐Rivas, María del RocioThompson-Bonilla, Miguel Vargas
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12885-019-5532-5
Protein interaction disruption in cancerCited by: 8
Author(s): Matthew Ruffalo, Ziv Bar‐Joseph
Software Mentions: 1
Published: over 6 years ago
10.1186/s12885-021-08174-z
Robust expression of LINE-1 retrotransposon encoded proteins in oral squamous cell carcinomaCited by: 2
Author(s): Koel Mukherjee, Debpali Sur, Abhijeet Singh, Suresh Rai, Neeladrisingha Das, Rakshanya Sekar, Srinu Narindi, Vandana Dhingra, Bhanwar Lal Jat, K V Vinu Balraam, Saurabh Agarwal, Prabhat Kumar Mandal
Software Mentions: 1
Published: over 4 years ago
10.1186/s12885-018-4704-z
Natural product derivative Gossypolone inhibits Musashi family of RNA-binding proteinsCited by: 35
Author(s): Lan Lan, Hao Líu, Amber Rae Smith, Carl Appelman, Yu Jiao, Sarah Line Larsen, Rebecca T. Marquez, Xiaoqing Wu, Frank Y. Liu, Philip Gao, Ragul Gowthaman, John Karanicolas, Roberto N. De Guzman, Steven A. Rogers, Jeffrey Aubé, Kristi L. Neufeld, Liang Xu
Software Mentions: 1
Published: over 7 years ago
10.1186/s12885-019-6056-8
Generation of dual specific bivalent BiTEs (dbBIspecific T-cell engaging antibodies) for cellular immunotherapyCited by: 7
Author(s): Maciej Kujawski, Lin Li, Supriyo Bhattacharya, Patty Wong, Wen‐Hwa Lee, Lindsay Williams, Harry Li, Junie Chea, Kofi Poku, Nicole Bowles, Nagarajan Vaidehi, Paul J. Yazaki, John E. Shively
Software Mentions: 1
Published: about 6 years ago
10.1186/s12885-019-5845-4
A germline mutation in Rab43 gene identified from a cancer family predisposes to a hereditary liver-colon cancer syndromeCited by: 4
Author(s): Yanting Jiang, Yue Sun, Jianbo Hu, Nan Yu, Hui Liu, Jiankun Fan, Xuelian Ning, Yilan Li, Baogang Liu, Yihua Sun, Jinwei Zhang, Xiaohong Qiu, Songbin Fu, Chunlan Zhou, Hui Xu
Software Mentions: 1
Published: over 6 years ago
10.1186/1471-2121-14-27
Arginine68 is an essential residue for the C-terminal cleavage of human Atg8 family proteinsCited by: 16
Author(s): Chao Liu, Hongshen Ma, Jiaxue Wu, Qiang Huang, Jun O. Liu, Yu Liu
Software Mentions: 1
Published: over 12 years ago
10.1186/s13065-021-00758-x
Antibacterial and antioxidant activities of extracts and isolated compounds from the roots extract of Cucumis prophetarum and in silico study on DNA gyrase and human peroxiredoxin 5Cited by: 8
Author(s): Wario Galma, Milkyas Endale, Emebet Getaneh, Rajalakshmanan Eswaramoorthy, Temesgen Assefa, Yadessa Melaku
Software Mentions: 1
Published: over 4 years ago
10.1186/s13065-021-00766-x
Molecular docking, chemo-informatic properties, alpha-amylase, and lipase inhibition studies of benzodioxol derivativesCited by: 12
Author(s): Mohammed Hawash, Nidal Jaradat, Suhaib Shekfeh, Murad Abualhasan, Ahmad Eid, Linda Issa
Software Mentions: 1
Published: over 4 years ago
10.1186/s13065-019-0582-y
Molecular docking and simulation of Zika virus NS3 helicaseCited by: 15
Author(s): Syed Lal Badshah, Nasir Ahmad, Ashfaq Ur Rehman, Khalid Khan, Asad Ullah, Abdulrhman Alsayari, Abdullatif Bin Muhsinah, Yahia N. Mabkhot
Software Mentions: 1
Published: over 6 years ago
10.1186/s13065-019-0532-8
Design, synthesis and evaluation of novel 3,5-disubstituted benzamide derivatives as allosteric glucokinase activatorsCited by: 14
Author(s): Ajmer Singh Grewal, Rajeev Kharb, Devendra Prasad, Jagdeep Singh Dua, Viney Lather
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12906-018-2312-8
Efficacy of Andrographis paniculata against extended spectrum β-lactamase (ESBL) producing E. coliCited by: 28
Author(s): Ubaid Rasool, Shivam Priya, Afsana Parveen, Saroj Kumar Sah, S. Hemalatha
Software Mentions: 1
Published: about 7 years ago
10.1186/1472-6882-14-89
Role of berberine in anti-bacterial as a high-affinity LPS antagonist binding to TLR4/MD-2 receptorCited by: 67
Author(s): Ming Chu, Ran Ding, Zhi‐gang Chu, Mingbo Zhang, Xiaoyan Liu, Shao-Hua Xie, Yuanzheng Zhai, Yuedan Wang
Software Mentions: 1
Published: over 11 years ago
10.1186/1472-6823-14-16
A case of Aromatase deficiency due to a novel CYP19A1 mutationCited by: 35
Author(s): Lucia Gagliardi, Hamish S. Scott, Feng Jiang, David J. Torpy
Software Mentions: 1
Published: over 11 years ago
10.1186/s12862-019-1461-9
Insights into body size variation in cetaceans from the evolution of body-size-related genesCited by: 10
Author(s): Yingying Sun, Yanzhi Liu, Xiaohui Sun, Yurui Lin, Daiqing Yin, Shixia Xu, Guang Yang
Software Mentions: 1
Published: over 6 years ago
10.1186/1471-2148-10-365
Chlorophyll-binding proteins revisited - a multigenic family of light-harvesting and stress proteins from a brown algal perspectiveCited by: 91
Author(s): Simon M. Dittami, Gurvan Michel, Jonas Collén, Catherine Boyen, Thierry Tonon
Software Mentions: 1
Published: almost 16 years ago
10.1186/s12862-015-0490-2
Divergence and adaptive evolution of the gibberellin oxidase genes in plantsCited by: 41
Author(s): Yuan Huang, Xi Wang, Song Ge, Guang‐Yuan Rao
Software Mentions: 1
Published: about 10 years ago
10.1186/1471-2148-12-4
Evolution, expansion and expression of the Kunitz/BPTI gene family associated with long-term blood feeding in Ixodes ScapularisCited by: 54
Author(s): Shao‐Xing Dai, Ai-Di Zhang, Jing‐Fei Huang
Software Mentions: 1
Published: almost 14 years ago
10.1186/1471-2148-11-149
Molecular evolution of the vertebrate TLR1 gene family - a complex history of gene duplication, gene conversion, positive selection and co-evolutionCited by: 62
Author(s): Yinhua Huang, Nicholas D. Temperley, Liming Ren, Jacqueline Smith, Ning Li, David W. Burt
Software Mentions: 1
Published: over 14 years ago
10.1186/s12862-015-0337-x
Phylogeny and evolution of plant macrophage migration inhibitory factor/D-dopachrome tautomerase-like proteinsCited by: 30
Author(s): Ralph Panstruga, Kira Baumgarten, Jürgen Bernhagen
Software Mentions: 1
Published: over 10 years ago
10.1186/1471-2148-11-273
The UlaG protein family defines novel structural and functional motifs grafted on an ancient RNase foldCited by: 7
Author(s): Francisco Fernández, Fernando Garcés, Miguel López-Estepa, Juan Aguilar, Laura Baldomà, Miquel Coll, Josefa Badı́a, M. Cristina Vega
Software Mentions: 1
Published: almost 15 years ago
10.1186/1471-2148-12-66
Molecular evolution of pentatricopeptide repeat genes reveals truncation in species lacking an editing target and structural domains under distinct selective pressuresCited by: 30
Author(s): Michael L. Hayes, Karolyn Giang, R. Michael Mulligan
Software Mentions: 1
Published: over 13 years ago
10.1186/s12862-016-0823-9
Structural differences and differential expression among rhabdomeric opsins reveal functional change after gene duplication in the bay scallop, Argopecten irradians (Pectinidae)Cited by: 8
Author(s): Anita J. Porath-Krause, Autum N. Pairett, Davide Faggionato, Bhagyashree S. Birla, Kalyanasundaram Sankar, Jeanne M. Serb
Software Mentions: 1
Published: almost 9 years ago
10.3390/biom10111589
A Synthetic CPP33-Conjugated HOXA9 Active Domain Peptide Inhibits Invasion Ability of Non-Small Lung Cancer CellsCited by: 3
Author(s): Seong‐Lan Yu, Han Mo Koo, Se-In Lee, Jaeku Kang, Young Ho Han, Young Il Yeom, Dong Chul Lee
Software Mentions: 1
Published: almost 5 years ago
10.3390/biom5010060
Artificial Affinity Proteins as Ligands of ImmunoglobulinsCited by: 21
Author(s): Barbara Mouratou, Ghislaine Béhar, Frédéric Pecorari
Software Mentions: 1
Published: almost 11 years ago
10.3390/biom11091348
Inhibition of UBA5 Expression and Induction of Autophagy in Breast Cancer Cells by Usenamine ACited by: 9
Author(s): Bo Fang, Zijun Li, Yinda Qiu, Namki Cho, Hee Min Yoo
Software Mentions: 1
Published: about 4 years ago
10.3390/biom11050634
S100P Interacts with p53 while Pentamidine Inhibits This InteractionCited by: 0
Author(s): Revansiddha Katte, Deepu Dowarha, Ruey Hwang Chou, Chin Yu
Software Mentions: 1
Published: over 4 years ago
10.3390/biom10071050
Deamidated Human Triosephosphate Isomerase is a Promising Druggable TargetCited by: 8
Author(s): Sergio Enríquez-Flores, Luis Antonio Flores-López, Itzhel García-Torres, Ignacio De la Mora-De la Mora, Nallely Cabrera, Pedro Gutiérrez‐Castrellón, Yoalli Martínez-Pérez, Gabriel López-Velázquez
Software Mentions: 1
Published: over 5 years ago
10.3390/biom10050738
Chemoenzymatic Synthesis and Biological Evaluation for Bioactive Molecules Derived from Bacterial Benzoyl Coenzyme A Ligase and Plant Type III Polyketide SynthaseCited by: 4
Author(s): Kamal Adhikari, I‐Wen Lo, Chun-Liang Chen, Yung‐Lin Wang, Kuan‐Hung Lin, Saeid Malek Zadeh, Rajesh Rattinam, Yi-Shan Li, Changshan Wu, Tsung‐Lin Li
Software Mentions: 1
Published: over 5 years ago
10.3390/biom10081130
Structural Characterization of an S-enantioselective Imine Reductase from Mycobacterium SmegmatisCited by: 4
Author(s): Tjark H. Meyer, Nadine Zumbrägel, Christina Geerds, Harald Gröger, Hartmut H. Niemann
Software Mentions: 1
Published: over 5 years ago
10.3390/biom9060212
Distant Non-Obvious Mutations Influence the Activity of a Hyperthermophilic Pyrococcus furiosus Phosphoglucose IsomeraseCited by: 11
Author(s): Kalyanasundaram Subramanian, Karolina Mitusińska, John Raedts, Feras Almourfi, Henk Jan Joosten, Sjon Hendriks, Svetlana E. Sedelnikova, Servé W. M. Kengen, Wilfred R. Hagen, Artur Góra, Vítor A. P. Martins dos Santos, Patrick J. Baker, John van der Oost, Peter J. Schaap
Software Mentions: 1
Published: over 6 years ago
10.3390/biom8030078
Multi-Spectroscopic and Theoretical Analysis on the Interaction between Human Serum Albumin and a Capsaicin Derivative—RPF101Cited by: 20
Author(s): Otávio Augusto Chaves, Maurício Temotheo Tavares, Micael Rodrigues Cunha, Roberto Parise-Filho, Carlos Maurício R. Sant’Anna, José Carlos Netto‐Ferreira
Software Mentions: 1
Published: about 7 years ago
10.3390/biom10030490
Interactions Under Crowding Milieu: Chemical-Induced Denaturation of Myoglobin is Determined by the Extent of Heme Dissociation on Interaction with CrowdersCited by: 20
Author(s): Khalida Nasreen, Zahoor Ahmad Parray, Shahzaib Ahamad, Faizan Ahmad, Anwar Ahmed, Salman Alamery, Tajamul Hussain, Md. Imtaiyaz Hassan, Asimul Islam
Software Mentions: 1
Published: over 5 years ago
10.3390/biom11071008
Kinetic Constraints in the Specific Interaction between Phosphorylated Ubiquitin and Proteasomal Shuttle FactorsCited by: 2
Author(s): Ling-Yun Qin, Zhou Gong, Kan Liu, Dongyan Xu, Chun Tang
Software Mentions: 1
Published: over 4 years ago
10.3390/biom10121671
Structural Insight into the Contributions of the N-Terminus and Key Active-Site Residues to the Catalytic Efficiency of Glutamine Synthetase 2Cited by: 3
Author(s): Wenting Chen, Hsin‐Yu Yang, Cheng-Yao Lin, Yi-Zong Lee, Szu-Chin Ma, Wei-Cheng Chen, Hao Yin
Software Mentions: 1
Published: almost 5 years ago
10.3390/biom11060787
Attacking COVID-19 Progression Using Multi-Drug Therapy for Synergetic Target EngagementCited by: 12
Author(s): Matt Coban, Juliet Morrison, Sushila Maharjan, David Hyram Hernandez Medina, Wanlu Li, Yu Shrike Zhang, William D. Freeman, Evette S. Radisky, Karine G. Le Roch, Carla Weisend, Hideki Ebihara, Thomas R. Caulfield
Software Mentions: 1
Published: over 4 years ago
10.1016/j.bmc.2020.115675
Small-molecule active pharmaceutical ingredients of approved cancer therapeutics inhibit human aspartate/asparagine-β-hydroxylaseCited by: 8
Author(s): Lennart Brewitz, Anthony Tumber, Xiaojin Zhang, Christopher J. Schofield
Software Mentions: 1
Published: about 5 years ago
10.1016/j.bpj.2020.06.009
The Glycosphingolipid GM3 Modulates Conformational Dynamics of the Glucagon ReceptorCited by: 22
Author(s): T. Bertie Ansell, Wanling Song, Mark S.P. Sansom
Software Mentions: 1
Published: over 5 years ago
10.1016/j.bpj.2020.06.012
In-Lipid Structure of Pressure-Sensitive Domains Hints Mechanosensitive Channel Functional DiversityCited by: 12
Author(s): Charalampos Kapsalis, Yue Ma, Bela E. Bode, Christos Pliotas
Software Mentions: 1
Published: over 5 years ago
10.1016/j.bpj.2018.05.037
Blebbistatin Effects Expose Hidden Secrets in the Force-Generating Cycle of Actin and MyosinCited by: 34
Author(s): Mohammad A. Rahman, Marko Ušaj, Dilson E. Rassier, Alf Månsson
Software Mentions: 1
Published: over 7 years ago
10.1016/j.bpj.2015.02.017
Characterization of Folding Cores in the Cyclophilin A-Cyclosporin A ComplexCited by: 5
Author(s): Jack W. Heal, Stephen A. Wells, Claudia A. Blindauer, Robert B. Freedman, Rudolf A. Römer
Software Mentions: 1
Published: over 10 years ago
10.1016/j.bpj.2017.08.018
Analysis of a Functional Dimer Model of Ubiquinol Cytochrome c OxidoreductaseCited by: 10
Author(s): Jason N. Bazil
Software Mentions: 1
Published: about 8 years ago
10.1016/j.bpj.2019.10.024
Atomistic Modeling of Scattering Curves for Human IgG1/4 Reveals New Structure-Function InsightsCited by: 7
Author(s): David W. Wright, Emma Elliston, Gar Kay Hui, Stephen J. Perkins
Software Mentions: 1
Published: almost 6 years ago
10.1016/j.bpj.2020.05.029
Measurements of the Timescale and Conformational Space of AMPA Receptor DesensitizationCited by: 7
Author(s): Héctor Salazar, Sabrina Mischke, Andrew J.R. Plested
Software Mentions: 1
Published: over 5 years ago
10.1016/j.bpj.2018.04.034
Dependence of Chromatosome Structure on Linker Histone Sequence and Posttranslational ModificationCited by: 30
Author(s): Mehmet Ali Öztürk, Vlad Cojocaru, Rebecca C. Wade
Software Mentions: 1
Published: over 7 years ago
10.1016/j.bpj.2020.03.023
Amyloid Evolution: Antiparallel Replaced by ParallelCited by: 19
Author(s): Ali Asghar Hakami Zanjani, Nicholas P. Reynolds, Afang Zhang, Tanja Schilling, Raffaele Mezzenga, Joshua T. Berryman
Software Mentions: 1
Published: over 5 years ago
10.1016/j.bpj.2017.09.005
Sparse Labeling PELDOR Spectroscopy on Multimeric Mechanosensitive Membrane ChannelsCited by: 23
Author(s): Katrin Ackermann, Christos Pliotas, Silvia Valera, Jim Naismith, Bela E. Bode
Software Mentions: 1
Published: about 8 years ago
10.1007/s41048-015-0015-y
Visualizing the Ensemble Structures of Protein Complexes Using Chemical Cross-Linking Coupled with Mass SpectrometryCited by: 25
Author(s): Zhou Gong, Yue-He Ding, Dongyan Xu, Na Liu, Eric Erquan Zhang, Meng‐Qiu Dong, Chun Tang
Software Mentions: 1
Published: almost 10 years ago
10.1007/s41048-017-0044-9
Protocol for analyzing protein ensemble structures from chemical cross-links using DynaXLCited by: 8
Author(s): Zhou Gong, Zhu Liu, Dongyan Xu, Yue-He Ding, Meng‐Qiu Dong, Chun Tang
Software Mentions: 1
Published: almost 8 years ago
10.1007/s12551-017-0278-2
Alternative reagents to antibodies in imaging applicationsCited by: 45
Author(s): Robert Bedford, Christian Tiede, Ruth E Hughes, Alistair Curd, Michael J. McPherson, Michelle Peckham, Darren C. Tomlinson
Software Mentions: 1
Published: over 8 years ago
10.1007/s12551-017-0274-6
Hypertrophic cardiomyopathy and the myosin mesa: viewing an old disease in a new lightCited by: 110
Author(s): Darshan V. Trivedi, Arjun S. Adhikari, Saswata S. Sarkar, Kathleen M. Ruppel, James A. Spudich
Software Mentions: 1
Published: over 8 years ago
10.1089/biores.2016.0035
<i>In silico</i> Identification of Potential Peptides or Allergen Shot Candidates Against <i>Aspergillus fumigatus</i>Cited by: 10
Author(s): Raman Thakur, Jata Shankar
Software Mentions: 1
Published: over 9 years ago
10.1186/s40643-019-0255-7
Accelerated directed evolution of dye-decolorizing peroxidase using a bacterial extracellular protein secretion system (BENNY)Cited by: 17
Author(s): Abdulrahman Hirab Ali Alessa, Kang Lan Tee, David González-Pérez, Hossam Eldin Mohamed Omar Ali, Caroline Evans, Alex Trevaskis, Jian‐He Xu, Tuck Seng Wong
Software Mentions: 1
Published: over 6 years ago
10.1042/BSR20190446
Changing substrate specificity and iteration of amino acid chain elongation in glucosinolate biosynthesis through targeted mutagenesis of <i>Arabidopsis</i> methylthioalkylmalate synthase 1Cited by: 20
Author(s): Annette Petersen, Lea G. Hansen, Nadia Mirza, Christoph Crocoll, Osman Mirza, Barbara Ann Halkier
Software Mentions: 1
Published: over 6 years ago
10.1042/BSR20203837
Structural assessment of SARS-CoV2 accessory protein ORF7a predicts LFA-1 and Mac-1 binding potentialCited by: 20
Author(s): Zubair Ahmed Nizamudeen, Emma-Ruoqi Xu, Vivin Karthik, Mohamed Halawa, Kenton P. Arkill, Andrew Jackson, David O. Bates, Jonas Emsley
Software Mentions: 1
Published: almost 5 years ago
10.1042/BSR20202583
Network pharmacology for the identification of phytochemicals in traditional Chinese medicine for COVID-19 that may regulate interleukin-6Cited by: 65
Author(s): Wenhao Niu, Feng Wu, Wenyue Cao, Zonggui Wu, Yi‐Ping Chao, Fei Peng, Chun Liang
Software Mentions: 1
Published: almost 5 years ago
10.1042/BSR20181953
LipG a bifunctional phospholipase/thioesterase involved in mycobacterial envelope remodelingCited by: 22
Author(s): Pierre Santucci, Vanessa Point, Isabelle Poncin, Alexandre Guy, Céline Crauste, Carole Serveau-Avesque, Jean Marie Galano, Christopher D. Spilling, Jean‐François Cavalier, Stéphane Canaan
Software Mentions: 1
Published: almost 7 years ago
10.1042/BSR20203424
The model structure of the hammerhead ribozyme formed by RNAs of reciprocal chiralityCited by: 0
Author(s): Eliza Wyszko, Mariusz Popenda, Dorota Gudanis, Joanna Sarzyńska, Agnieszka Belter, Patrick M. Perrigue, Paweł Skowronek, Katarzyna Rolle, Jan Barciszewski
Software Mentions: 1
Published: almost 5 years ago
10.1042/BSR20171370
Crystal structure of IspF from <i>Bacillus subtilis</i> and absence of protein complex assembly amongst IspD/IspE/IspF enzymes in the MEP pathwayCited by: 3
Author(s): Zhongchuan Liu, Yipeng Jin, Weifeng Liu, Yong Tao, Ganggang Wang
Software Mentions: 1
Published: over 7 years ago
10.1042/BSR20160004
SNARE zipperingCited by: 33
Author(s): Xiaochu Lou, Yeon‐Kyun Shin
Software Mentions: 1
Published: over 9 years ago
10.1042/BSR20171377
Four novel mutations in the <i>ALPL</i> gene in Chinese patients with odonto, childhood, and adult hypophosphatasiaCited by: 10
Author(s): Li Xu, Qi Pang, Yan Jiang, Ou Wang, Mei Li, Xiaoping Xing, Weibo Xia
Software Mentions: 1
Published: about 7 years ago
10.1042/BSR20211259
Mechanism of BIP-4 mediated inhibition of InsP3Kinase-ACited by: 1
Author(s): Themistoklis Paraschiakos, Wilhelm Flat, Chen Ya, Johannes Kirchmair, Sabine Windhorst
Software Mentions: 1
Published: over 4 years ago
10.1042/BSR20180872
Identification of novel pathogenic ABCA4 variants in a Han Chinese family with Stargardt diseaseCited by: 13
Author(s): Xiang Qin, Yanna Cao, Hongbo Xu, Yi Guo, Zhijian Yang, Lu Xu, Lamei Yuan, Hao Deng
Software Mentions: 1
Published: almost 7 years ago
10.1042/BSR20150095
The Borrelia afzelii outer membrane protein BAPKO_0422 binds human factor-H and is predicted to form a membrane-spanning β-barrelCited by: 7
Author(s): Adam Dyer, G. Brown, Lenka Stejskal, Peter R. Laity, Richard J. Bingham
Software Mentions: 1
Published: over 10 years ago
10.1042/BSR20180768
A novel chlorination-induced ribonuclease YabJ from <i>Staphylococcus aureus</i>Cited by: 11
Author(s): Hyo Jung Kim, Ae‐Ran Kwon, Bong-Jin Lee
Software Mentions: 1
Published: about 7 years ago
10.1042/BSR20140058
Endoplasmic reticulum stress response in yeast and humansCited by: 90
Author(s): Haobin Wu, Benjamin Si Han Ng, Guillaume Thibault
Software Mentions: 1
Published: over 11 years ago
10.1042/BSR20191501
Structural and functional characterization of buffalo oviduct-specific glycoprotein (OVGP1) expressed during estrous cycleCited by: 7
Author(s): Suman Choudhary, Jagadeesh Janjanam, Sudarshan Kumar, Jai K. Kaushik, Ashok Kumar Mohanty
Software Mentions: 1
Published: almost 6 years ago
10.1042/BSR20210491
Evaluation of spice and herb as phyto-derived selective modulators of human retinaldehyde dehydrogenases using a simple <i>in vitro</i> methodCited by: 3
Author(s): Thi Bao Chau Bui, Shohei Nosaki, Mito Kokawa, Yuqun Xu, Yutaka Kitamura, Masaru Tanokura, Satoshi Hachimura, Takuya Miyakawa
Software Mentions: 1
Published: over 4 years ago
10.1042/BSR20170251
<i>In vitro</i> characterization of six <i>STUB1</i> variants in spinocerebellar ataxia 16 reveals altered structural properties for the encoded CHIP proteinsCited by: 26
Author(s): Yasaman Pakdaman, Monica Sanchez-Guixé, Rune Kleppe, Sigrid Erdal, Helene J. Bustad, Lise Bjørkhaug, Kristoffer Haugarvoll, Charalampos Tzoulis, Ketil Heimdal, Per M. Knappskog, Stefan Johansson, Ingvild Aukrust
Software Mentions: 1
Published: over 8 years ago
10.1042/BSR20210006
Exploring the biosynthetic pathway of lignin in <i>Acorus tatarinowii</i> Schott using <i>de novo</i> leaf and rhizome transcriptome analysisCited by: 3
Author(s): Shengxiang Zhang, Liqiang Zhao, Chunmiao Shan, Yuanyuan Shi, Kelong Ma, Jiawen Wu
Software Mentions: 1
Published: over 4 years ago
10.1042/BSR20203034
Biochemical characterization of an <i>E. coli</i> cell division factor FtsE shows ATPase cycles similar to the NBDs of ABC-transportersCited by: 3
Author(s): Sunanda Mallick, Ashish Kumar, Hiren Dodia, Cyrus Alexander, Dileep Vasudevan, Tushar Kant Beuria
Software Mentions: 1
Published: almost 5 years ago
10.1042/BSR20201256
Glecaprevir and Maraviroc are high-affinity inhibitors of SARS-CoV-2 main protease: possible implication in COVID-19 therapyCited by: 115
Author(s): Anas Shamsi, Taj Mohammad, Saleha Anwar, Mohamed F. Alajmi, Afzal Hussain, Tabish Rehman, Asimul Islam, Md. Imtaiyaz Hassan
Software Mentions: 1
Published: over 5 years ago
10.1042/BSR20171099
Ubiquitin recognition of BAP1: understanding its enzymatic functionCited by: 7
Author(s): Pranita Hanpude, Sushmita Bhattacharya, Abhishek Kumar Singh, Tushar Kanti Maiti
Software Mentions: 1
Published: about 8 years ago
10.1042/BSR20203727
The N-terminus of <i>Paenibacillus larvae</i> C3larvinA modulates catalytic efficiencyCited by: 4
Author(s): Madison Turner, Kayla A. Heney, A. Rod Merrill
Software Mentions: 1
Published: almost 5 years ago