pypi: PyMOL | Projects | Ecosyste.ms: Papers

10.1038/srep20473

Small-molecule inhibition of PTPRZ reduces tumor growth in a rat model of glioblastoma
Cited by: 49
Author(s): Akihiro Fujikawa, Asako Nagahira, Hajime Sugawara, Kentaro Ishii, Seiichi Imajo, Masahito Matsumoto, Kazuya Kuboyama, Ryoko Suzuki, Naomi Tanga, Masanori Noda, Susumu Uchiyama, Toshiyuki Tomoo, Atsuto Ogata, Makoto Masumura, Masaharu Noda
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep21151

SpyRing interrogation: analyzing how enzyme resilience can be achieved with phytase and distinct cyclization chemistries
Cited by: 51
Author(s): Christopher Schoene, Samantha Bennett, Mark Howarth
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep20629

New insights into the mechanism of substrates trafficking in Glyoxylate/Hydroxypyruvate reductases
Cited by: 18
Author(s): Louise Lassalle, S. Engilberge, Dominique Madern, Pierre Vauclare, Bruno Franzetti, Éric Girard
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep21256

Evolution and comparative analysis of the bat MHC-I region
Cited by: 43
Author(s): Justin H. J. Ng, Mary Tachedjian, Janine E. Deakin, James W. Wynne, Jie Cui, Volker Häring, Ivano Broz, Honglei Chen, Katherine Belov, Lin‐Fa Wang, Michelle L. Baker
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep20915

Conformational plasticity of RepB, the replication initiator protein of promiscuous streptococcal plasmid pMV158
Cited by: 12
Author(s): Roeland Boer, José A. Ruiz-Masó, Manuel Rueda, Maxim V. Petoukhov, Cristina Machón, Dmitri I. Svergun, Modesto Orozco, Gloria del Solar, Miquel Coll
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep21375

A human β-III-spectrin spinocerebellar ataxia type 5 mutation causes high-affinity F-actin binding
Cited by: 25
Author(s): Adam W. Avery, Jonathan Crain, David D. Thomas, Thomas S. Hays
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep21501

Structural and biochemical characterization of an RNA/DNA binding motif in the N-terminal domain of RecQ4 helicases
Cited by: 13
Author(s): Francesca Marino, Aditya Mojumdar, Chiara Zucchelli, Anurag Bhardwaj, Emanuele Buratti, Alessandro Vindigni, Giovanna Musco, Silvia Onesti
Software Mentions: 1
Published: almost 9 years ago

10.1093/bioinformatics/btz062

Calculation of accurate interatomic contact surface areas for the quantitative analysis of non-bonded molecular interactions
Cited by: 46
Author(s): Judemir Ribeiro, Carlos Ríos-Vera, Francisco S. Melo, Andreas Schüller
Software Mentions: 1
Published: almost 6 years ago

10.1038/srep21815

A novel mutation in TRPV3 gene causes atypical familial Olmsted syndrome
Cited by: 33
Author(s): Cheng Ni, Ming Yan, Jia Zhang, Ruhong Cheng, Jianying Liang, Dan De-zhong, Zhen Wang, Ming Li, Zhirong Yao
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep21385

A polyalanine peptide derived from polar fish with anti-infectious activities
Cited by: 44
Author(s): Marlon Henrique Cardoso, Suzana Meira Ribeiro, Diego O. Nolasco, César de la Fuente-Núñez, Mário R. Felício, Sónia Gonçalves, Carolina O. Matos, Luciano M. Lião, Nuno C. Santos, Robert E. W. Hancock, Octávio L. Franco, Ludovico Migliolo
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms18051041

Structure, Expression, and Functional Analysis of the Hexokinase Gene Family in Cassava
Cited by: 24
Author(s): Meiyu Geng, Yuan Yao, Yunlin Wang, Xiaohui Wu, Chong Sun, Ruimei Li, Shaoping Fu, Ran Duan, Jiao Liu, Xinwen Hu, Jiao Guo
Software Mentions: 1
Published: over 7 years ago

10.1038/srep22284

Evolving Methanococcoides burtonii archaeal Rubisco for improved photosynthesis and plant growth
Cited by: 66
Author(s): Robert H. Wilson, Hernán Alonso, Spencer M. Whitney
Software Mentions: 1
Published: over 8 years ago

10.1038/srep22523

Mimicking titration experiments with MD simulations: A protocol for the investigation of pH-dependent effects on proteins
Cited by: 19
Author(s): Eileen Socher, Heinrich Sticht
Software Mentions: 1
Published: over 8 years ago

10.1038/srep22527

Extended string-like binding of the phosphorylated HP1α N-terminal tail to the lysine 9-methylated histone H3 tail
Cited by: 23
Author(s): Hideaki Shimojo, Ayumi Kawaguchi, Takashi Oda, Nobuto Hashiguchi, Soichi Omori, Kei Moritsugu, Akinori Kidera, Kyoko Hiragami-Hamada, Jun‐ichi Nakayama, Mamoru Sato, Yoshifumi Nishimura
Software Mentions: 1
Published: over 8 years ago

10.1038/srep22666

Stalking influenza by vaccination with pre-fusion headless HA mini-stem
Cited by: 101
Author(s): Sophie A. Valkenburg, Vamsee Mallajosyula, Olive T. W. Li, Alex W. H. Chin, George Carnell, Nigel Temperton, Raghavan Varadarajan, Leo L. M. Poon
Software Mentions: 1
Published: over 8 years ago

10.1038/srep22885

The three-dimensional structure of Clostridium absonum 7α-hydroxysteroid dehydrogenase: new insights into the conserved arginines for NADP(H) recognition
Cited by: 22
Author(s): Deshuai Lou, Bochu Wang, Jun Tan, Lingyu Zhu, Xiaoxi Cen, Qingzhi Ji, Yue Wang
Software Mentions: 1
Published: over 8 years ago

10.1038/srep22973

Atomic visualization of a flipped-back conformation of bisected glycans bound to specific lectins
Cited by: 36
Author(s): Masamichi Nagae, Motoi Kanagawa, Kana Morita-Matsumoto, Shinya Hanashima, Yasuhiko Kizuka, Naoyuki Taniguchi, Yoshiki Yamaguchi
Software Mentions: 1
Published: over 8 years ago

10.1038/srep22894

A critical role of mevalonate for peptidoglycan synthesis in Staphylococcus aureus
Cited by: 18
Author(s): Yasuhiko Matsumoto, Jyunichiro Yasukawa, Masaki Ishii, Yohei Hayashi, Shuichi Miyazaki, Kazuhisa Sekimizu
Software Mentions: 1
Published: over 8 years ago

10.1038/srep23274

Mechanism and inhibition of human UDP-GlcNAc 2-epimerase, the key enzyme in sialic acid biosynthesis
Cited by: 30
Author(s): Sheng-Chia Chen, Chi‐Hung Huang, Shu-Jung Lai, Changju Yang, Tzu‐Hung Hsiao, Ching‐Heng Lin, Pin-Kuei Fu, Tzu‐Ping Ko, Yeh Chen
Software Mentions: 1
Published: over 8 years ago

10.1038/srep23138

Influenza A viruses escape from MxA restriction at the expense of efficient nuclear vRNP import
Cited by: 129
Author(s): Veronika Götz, Linda Magar, Dominik Dornfeld, Sebastian Giese, Anne Pohlmann, Dirk W. Höper, Byung-Whi Kong, David A. Jans, Martin Beer, Otto Haller, Martin Schwemmle
Software Mentions: 1
Published: over 8 years ago

10.1038/srep23454

Ca2+ monitoring in Plasmodium falciparum using the yellow cameleon-Nano biosensor
Cited by: 17
Author(s): Kishor Pandey, Pedro Eduardo Ferreira, Takeshi Ishikawa, Takeharu Nagai, O. Kaneko, Kazuhide Yahata
Software Mentions: 1
Published: over 8 years ago

10.1038/srep23743

Conserved differences in protein sequence determine the human pathogenicity of Ebolaviruses
Cited by: 34
Author(s): Morena Pappalardo, Miguel Juliá, Mark J. Howard, Jeremy S. Rossman, Martin Michaelis, Mark N. Wass
Software Mentions: 1
Published: over 8 years ago

10.1038/srep23605

Ligand-binding specificity and promiscuity of the main lignocellulolytic enzyme families as revealed by active-site architecture analysis
Cited by: 26
Author(s): Li Tian, Shijia Liu, Shuai Wang, Lushan Wang
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms18051042

BDNF Binds Its Pro-Peptide with High Affinity and the Common Val66Met Polymorphism Attenuates the Interaction
Cited by: 25
Author(s): Koichi Uegaki, Haruko Kumanogoh, Toshiyuki Mizui, Takatsugu Hirokawa, Yasuyuki Ishikawa, Masami Kojima
Software Mentions: 1
Published: over 7 years ago

10.1038/srep23712

Structure of the Cyclic Nucleotide-Binding Homology Domain of the hERG Channel and Its Insight into Type 2 Long QT Syndrome
Cited by: 9
Author(s): Yan Li, Hui Qi Ng, Qingxin Li, CongBao Kang
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms18061117

Mammalian Metallothionein-3: New Functional and Structural Insights
Cited by: 62
Author(s): Milan Vašák, Gabriele Meloni
Software Mentions: 1
Published: over 7 years ago

10.1038/srep23793

Design, synthesis, crystallization and biological evaluation of new symmetrical biscationic compounds as selective inhibitors of human Choline Kinase α1 (ChoKα1)
Cited by: 21
Author(s): Santiago Schiaffino-Ortega, Eleonora Baglioni, Elena Mariotto, Roberta Bortolozzi, Lucía Serrán-Aguilera, Pablo Ríos-Marco, María P. Carrasco-Jiménez, Miguel Á. Gallo, R. Hurtado‐Guerrero, Carmen Marco, Giuseppe Basso, Giampietro Viola, Antonio Entrena, Carlota Lopez Cara
Software Mentions: 1
Published: over 8 years ago

10.1038/srep23894

Molecular Interactions between Tarantula Toxins and Low-Voltage-Activated Calcium Channels
Cited by: 19
Author(s): Autoosa Salari, Benjamin S. Vega, Lorin S. Milescu, Mirela Milescu
Software Mentions: 1
Published: over 8 years ago

10.1038/srep24587

Synergistic Modification Induced Specific Recognition between Histone and TRIM24 via Fluctuation Correlation Network Analysis
Cited by: 15
Author(s): Jinmai Zhang, Huajie Luo, Hao Líu, Wei Ye, Ray Luo, Haifeng Chen
Software Mentions: 1
Published: over 8 years ago

10.1038/srep24165

Galectin-1 dimers can scaffold Raf-effectors to increase H-ras nanoclustering
Cited by: 64
Author(s): Olga Blaževitš, Yonatan G. Mideksa, Maja Šolman, Alessio Ligabue, Nicholas Ariotti, Hossein Nakhaeizadeh, Eyad K. Fansa, Anastassios C. Papageorgiou, Alfred Wittinghofer, Mohammad Réza Ahmadian, Daniel Abankwa
Software Mentions: 1
Published: over 8 years ago

10.1038/srep24535

A putative nitroreductase from the DosR regulon of Mycobacterium tuberculosis induces pro-inflammatory cytokine expression via TLR2 signaling pathway
Cited by: 18
Author(s): Vidyullatha Peddireddy, Sankara Narayana Doddam, Insaf Ahmed Qureshi, Priyadarshini Yerra, Niyaz Ahmed
Software Mentions: 1
Published: over 8 years ago

10.1038/srep24789

Structural basis for the specific inhibition of glycoprotein Ibα shedding by an inhibitory antibody
Cited by: 12
Author(s): Yue Tao, Xiaoqin Zhang, Xin Liang, Jianye Zang, Xi Mo, Renhao Li
Software Mentions: 1
Published: over 8 years ago

10.1038/srep24643

VirB8-like protein TraH is crucial for DNA transfer in Enterococcus faecalis
Cited by: 25
Author(s): Christian Fercher, Ines Probst, Verena Kohler, Nikolaus Goessweiner‐Mohr, Karsten Arends, Elisabeth Grohmann, Klaus Zangger, N. Helge Meyer, Walter Keller
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms18061147

Mutual Regulation of NOD2 and RIG-I in Zebrafish Provides Insights into the Coordination between Innate Antibacterial and Antiviral Signaling Pathways
Cited by: 15
Author(s): Li Nie, Xiaojun Xu, Lei Xiang, Jian-zhong Shao, Jiong Chen
Software Mentions: 1
Published: over 7 years ago

10.1038/srep25169

Sequence diversity of NanA manifests in distinct enzyme kinetics and inhibitor susceptibility
Cited by: 14
Author(s): Zhongli Xu, Susanne von Grafenstein, Elisabeth Walther, Julian E. Fuchs, Klaus R. Liedl, Andreas Sauerbrei, Michaela Schmidtke
Software Mentions: 1
Published: over 8 years ago

10.1038/srep25119

Small Molecules Antagonise the MIA-Fibronectin Interaction in Malignant Melanoma
Cited by: 8
Author(s): King Tuo Yip, Xue Zhong, Nadia Seibel, Stefanie Pütz, Jasmin Autzen, Raphael Gasper, Eckhard Hofmann, Jürgen Scherkenbeck, Raphael Stoll
Software Mentions: 1
Published: over 8 years ago

10.1038/srep25672

Screening of an anti-inflammatory peptide from Hydrophis cyanocinctus and analysis of its activities and mechanism in DSS-induced acute colitis
Cited by: 26
Author(s): Zengjie Zheng, Hongrui Jiang, Yan Huang, Jie Wang, Lei Qiu, Zhenlin Hu, Xiaochun Ma, Yiming Lu
Software Mentions: 1
Published: over 8 years ago

10.1038/srep25646

Analysis of crystal structure of Arabidopsis MPK6 and generation of its mutants with higher activity
Cited by: 14
Author(s): Bo Wang, Xinghua Qin, Juan Wu, Hao Deng, Yuan Li, Hongqiang Yang, Zhongzhou Chen, Guoqin Liu, Dongtao Ren
Software Mentions: 1
Published: over 8 years ago

10.1038/srep25737

Structural investigation into physiological DNA phosphorothioate modification
Cited by: 18
Author(s): Wenxian Lan, Zhixing Hu, Jie Shen, Handong Wang, Feng Jiang, Huili Liu, Dewu Long, Maili Liu, Chunyang Cao
Software Mentions: 1
Published: over 8 years ago

10.1038/srep25931

Molecular Mechanism for Conformational Dynamics of Ras·GTP Elucidated from In-Situ Structural Transition in Crystal
Cited by: 40
Author(s): Shigeyuki Matsumoto, Nao Miyano, Seiki Baba, Jingling Liao, Takashi Kawamura, Chiemi Tsuda, Azusa Takeda, Masaki Yamamoto, Takashi Kumasaka, Tohru Kataoka, Fumi Shima
Software Mentions: 1
Published: over 8 years ago

10.1038/srep25796

Two common structural motifs for TCR recognition by staphylococcal enterotoxins
Cited by: 11
Author(s): K.E.J. Rodstrom, Paulina Regenthal, Christopher D. Bahl, Alex T. Ford, David Baker, Karin Lindkvist‐Petersson
Software Mentions: 1
Published: over 8 years ago

10.1038/srep26433

Structural and functional insights into the E3 ligase, RNF126
Cited by: 27
Author(s): E. Krysztofinska, Santiago Martínez-Lumbreras, Arjun Thapaliya, N.J. Evans, Stephen High, Rivka L. Isaacson
Software Mentions: 1
Published: over 8 years ago

10.1038/srep27184

Functional analysis of thioredoxin from the desert lichen-forming fungus, Endocarpon pusillum Hedwig, reveals its role in stress tolerance
Cited by: 8
Author(s): Hui Li, Jiang-Chun Wei
Software Mentions: 1
Published: over 8 years ago

10.1038/srep27060

Unexpected involvement of staple leads to redesign of selective bicyclic peptide inhibitor of Grb7
Cited by: 20
Author(s): Menachem J. Gunzburg, Ketav Kulkarni, G.M. Watson, Nigus D. Ambaye, Mark P. Del Borgo, Rebecca Brandt, Stephanie C. Pero, Patrick Perlmutter, Matthew C. J. Wilce, Jacqueline Anne Wilce
Software Mentions: 1
Published: over 8 years ago

10.1038/srep27399

Structural flexibility of the periplasmic protein, FlgA, regulates flagellar P-ring assembly in Salmonella enterica
Cited by: 10
Author(s): Hiroyuki Matsunami, Young-Ho Yoon, V. A. Meshcheryakov, Keiichi Namba, Fadel A. Samatey
Software Mentions: 1
Published: over 8 years ago

10.1038/srep24612

Genome sequence of Perigonia lusca single nucleopolyhedrovirus: insights into the evolution of a nucleotide metabolism enzyme in the family Baculoviridae
Cited by: 11
Author(s): Daniel Mendes Pereira Ardisson-Araújo, Rayane Nunes Lima, Fernando Lucas Melo, Rollie J. Clem, Ning Huang, Sônia Nair Báo, Daniel Ricardo Sosa‐Gómez, Bergmann Morais Ribeiro
Software Mentions: 1
Published: over 8 years ago

10.1038/srep27383

Structure and calcium-binding studies of calmodulin-like domain of human non-muscle α-actinin-1
Cited by: 22
Author(s): Sara Drmota Prebil, Urška Slapšak, Miha Pavšič, Gregor Ilc, Vid Puž, Euripedes de Almeida Ribeiro, Dorothea Anrather, Markus Hartl, Lars Backman, Janez Plavec, Brigita Lenarčič, Kristina Djinović-Carugo
Software Mentions: 1
Published: over 8 years ago

10.1038/srep27062

Functional diversity of family 3 β-glucosidases from thermophilic cellulolytic fungus Humicola insolens Y1
Cited by: 22
Author(s): Wei Xia, Yingguo Bai, Ying Cui, Xinxin Xu, Lichun Qian, Pengjun Shi, Wei Zhang, Huiying Luo, Xiuan Zhan, Bin Yao
Software Mentions: 1
Published: over 8 years ago

10.1038/srep27729

Structure and function of chicken interleukin-1 beta mutants: uncoupling of receptor binding and in vivo biological activity
Cited by: 7
Author(s): Wenting Chen, Wen-Yang Huang, Ting Chen, Emmanuel Oluwatobi Salawu, Dongli Wang, Yi-Zong Lee, Yuan-Yu Chang, Lee‐Wei Yang, Shih‐Che Sue, Xinquan Wang, Hao Yin
Software Mentions: 1
Published: over 8 years ago

10.1038/srep27720

Amicoumacin A induces cancer cell death by targeting the eukaryotic ribosome
Cited by: 40
Author(s): I. Prokhorova, Kseniya A. Akulich, Desislava S. Makeeva, Ilya А. Osterman, Dmitry A. Skvortsov, Петр В. Сергиев, Olga А. Dontsova, Marat Yusupov, Marat Yusupov, Sergey E. Dmitriev
Software Mentions: 1
Published: over 8 years ago

10.1038/srep27922

Uncovering ancient transcription systems with a novel evolutionary indicator
Cited by: 4
Author(s): Naruhiko Adachi, Toshiya Senda, Masami Horikoshi
Software Mentions: 1
Published: over 8 years ago

10.1038/srep28234

Ribosome-associated Asc1/RACK1 is required for endonucleolytic cleavage induced by stalled ribosome at the 3′ end of nonstop mRNA
Cited by: 51
Author(s): Ken Ikeuchi, Toshifumi Inada
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms18061198

Biochemical and Computational Insights on a Novel Acid-Resistant and Thermal-Stable Glucose 1-Dehydrogenase
Cited by: 6
Author(s): Haitao Ding, Fen Biao Gao, Yong Yu, Bin Chen
Software Mentions: 1
Published: over 7 years ago

10.1038/srep28550

Structural insights of a hormone sensitive lipase homologue Est22
Cited by: 31
Author(s): Jing Huang, Ying‐Yi Huo, Rui Ji, Siyun Kuang, Chaoneng Ji, Xue-Wei Xu, Jixi Li
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.25149

Disturbed alternative splicing of FIR (PUF60) directed cyclin E overexpression in esophageal cancers
Cited by: 8
Author(s): Yukiko Ogura, Tyuji Hoshino, Nobuko Tanaka, Guzhanuer Ailiken, Sohei Kobayashi, Kazuo Kïtamura, Bahityar Rahmutulla, Masayuki Kano, Kentarou Murakami, Yasunori Akutsu, Fumio Nomura, Sakae Itoga, Hisahiro Matsubara, Hiroshi Matsushita
Software Mentions: 1
Published: over 6 years ago

10.1038/srep28486

STARD6 on steroids: solution structure, multiple timescale backbone dynamics and ligand binding mechanism
Cited by: 25
Author(s): Danny Létourneau, Mikaël Bédard, Jérôme Cabana, Andrée Lefèbvre, Jean‐Guy Lehoux, Pierre Lavigne
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms18071408

Identification of Direct Activator of Adenosine Monophosphate-Activated Protein Kinase (AMPK) by Structure-Based Virtual Screening and Molecular Docking Approach
Cited by: 13
Author(s): Tonghui Huang, Jie Sun, Shenghan Zhou, Jian Gao, Yi Liu
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms18071535

Recombinant Lipase from Gibberella zeae Exhibits Broad Substrate Specificity: A Comparative Study on Emulsified and Monomolecular Substrate
Cited by: 12
Author(s): Fanghua Wang, Hui Zhang, Zhongyang Zhao, Ruixia Wei, Bo Yang, Yonghua Wang
Software Mentions: 1
Published: over 7 years ago

10.1038/srep28922

Destabilizing an interacting motif strengthens the association of a designed ankyrin repeat protein with tubulin
Cited by: 26
Author(s): Shoeb Ahmad, Ludovic Pecqueur, Birgit Dreier, Djemel Hamdane, Magali Aumont-Niçaise, Andreas Plückthun, M. Knossow, B. Gigant
Software Mentions: 1
Published: over 8 years ago

10.1038/srep29077

Multifaceted anti-amyloidogenic and pro-amyloidogenic effects of C-reactive protein and serum amyloid P component in vitro
Cited by: 21
Author(s): Daisaku Ozawa, Ryo Nomura, Palma Mangione, Kazuhiro Hara, Tadakazu Okoshi, Riccardo Porcari, Vittorio Bellotti, Hironobu Naiki
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms18081680

Various Mechanisms Involve the Nuclear Factor (Erythroid-Derived 2)-Like (NRF2) to Achieve Cytoprotection in Long-Term Cisplatin-Treated Urothelial Carcinoma Cell Lines
Cited by: 13
Author(s): Margaretha A. Skowron, Günter Niegisch, Philipp Albrecht, Gommert van Koeveringe, Andrea Romano, Peter Albers, Wolfgang A. Schulz, Michèle J. Hoffmann
Software Mentions: 1
Published: over 7 years ago

10.1038/srep29548

Functional conservation and diversification of the soybean maturity gene E1 and its homologs in legumes
Cited by: 27
Author(s): Xingzheng Zhang, Hong Zhai, Yaying Wang, Xiaojie Tian, Yupeng Zhang, Hongyan Wu, Shixiang Lü, Guang Yang, Yuqiu Li, Lu Wang, Bo Hu, Qingyun Bu, Zhengjun Xia
Software Mentions: 1
Published: over 8 years ago

10.1038/srep29691

A sodium channel inhibitor ISTX-I with a novel structure provides a new hint at the evolutionary link between two toxin folds
Cited by: 6
Author(s): Mingqiang Rong, Jiangxin Liu, Meilin Zhang, Wang Gan, Gang Zhao, Guodong Wang, Yaping Zhang, Kaifeng Hu, Ren Lai
Software Mentions: 1
Published: over 8 years ago

10.1038/srep30279

Ligand binding to an Allergenic Lipid Transfer Protein Enhances Conformational Flexibility resulting in an Increase in Susceptibility to Gastroduodenal Proteolysis
Cited by: 34
Author(s): Syed Umer Abdullah, Yuri Alexeev, Philip E. Johnson, Neil M. Rigby, Alan Mackie, B. Dhaliwal, E.N. Clare Mills
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms18091848

Tongue Sole CD209: A Pattern-Recognition Receptor that Binds a Broad Range of Microbes and Promotes Phagocytosis
Cited by: 16
Author(s): Shuai Jiang, Li Sun
Software Mentions: 1
Published: about 7 years ago

10.1038/srep30170

Deep sequencing reveals global patterns of mRNA recruitment during translation initiation
Cited by: 11
Author(s): Rong Gao, Kai Yu, Ju-Kui Nie, Tengfei Lian, Jianshi Jin, Anders Liljas, Xiao Dong Su
Software Mentions: 1
Published: over 8 years ago

10.1038/srep30655

Binding Characteristics of Sphingosine-1-Phosphate to ApoM hints to Assisted Release Mechanism via the ApoM Calyx-Opening
Cited by: 20
Author(s): Hansi Zhang, Kristýna Pluháčková, Zhenyan Jiang, Rainer A. Böckmann
Software Mentions: 1
Published: over 8 years ago

10.1038/srep30909

Fusion to a homo-oligomeric scaffold allows cryo-EM analysis of a small protein
Cited by: 33
Author(s): Francesca Coscia, Leandro F. Estrozi, Fabienne Hans, Hélène Malet, Marjolaine Noirclerc‐Savoye, Guy Schoehn, Carlo Petosa
Software Mentions: 1
Published: over 8 years ago

10.1038/srep31005

Dynamics Correlation Network for Allosteric Switching of PreQ1 Riboswitch
Cited by: 23
Author(s): Wei Wang, Cheng Jiang, Jinmai Zhang, Wei Ye, Ray Luo, Haifeng Chen
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms18091894

Differences in Sulfotyrosine Binding amongst CXCR1 and CXCR2 Chemokine Ligands
Cited by: 11
Author(s): Natasha A. Moussouras, Anthony E. Getschman, Emily R. Lackner, Christopher T. Veldkamp, Michael B. Dwinell, Brian F. Volkman
Software Mentions: 1
Published: about 7 years ago

10.1038/srep31176

Structure of a Highly Active Cephalopod S-crystallin Mutant: New Molecular Evidence for Evolution from an Active Enzyme into Lens-Refractive Protein
Cited by: 10
Author(s): W.-H. Tan, Shu Cheng, Yu Tung Liu, Cheng Wu, Mei-Ju Lin, Chiao Che Chen, Lin Chao, Chi-Yuan Chou
Software Mentions: 1
Published: over 8 years ago

10.1038/srep31074

Repositioning organohalogen drugs: a case study for identification of potent B-Raf V600E inhibitors via docking and bioassay
Cited by: 27
Author(s): Yisu Li, Binbin Guo, Zhijian Xu, Bo Li, Tingting Cai, Xinben Zhang, Yuqi Yu, He-Yao Wang, Jiye Shi, Weiliang Zhu
Software Mentions: 1
Published: over 8 years ago

10.1038/srep31500

N-acylhydrazone inhibitors of influenza virus PA endonuclease with versatile metal binding modes
Cited by: 47
Author(s): Mauro Carcelli, Dominga Rogolino, Anna Gatti, Laura De Luca, Mario Sechi, Gyanendra Kumar, Stephen W. White, Annelies Stevaert, Lieve Naesens
Software Mentions: 1
Published: over 8 years ago

10.1038/srep31463

The structural origin of metabolic quantitative diversity
Cited by: 19
Author(s): S. Koshiba, Ikuko N. Motoike, Kazuyuki Kojima, Takanori Hasegawa, Matsuyuki Shirota, Tomo Saito, Daisuke Saigusa, Inaho Danjoh, Fumiki Katsuoka, Soichi Ogishima, Yosuke Kawai, Yumi Yamaguchi-Kabata, Miyuki Sakurai, Sachiko Hirano, Junichi Nakata, Hozumi Motohashi, Atsushi Hozawa, Shinichi Kuriyama, Naoko Minegishi, Masao Nagasaki, Takako Toda, Nobuo Fuse, Hideyasu Kiyomoto, Junichi Sugawara, Yôichi Suzuki, Shigeo Kure, Nobuo Yaegashi, Osamu Takahashi, Kengo Kinoshita, Jun Yasuda, Masayuki Yamamoto
Software Mentions: 1
Published: over 8 years ago

10.1038/srep31425

Structure and function of human Naa60 (NatF), a Golgi-localized bi-functional acetyltransferase
Cited by: 23
Author(s): Jiyun Chen, Liang Liu, Chun-Ling Cao, Meijun Li, Kemin Tan, Xiaohan Yang, Cai‐Hong Yun
Software Mentions: 1
Published: over 8 years ago

10.1038/srep31933

Disease-Homologous Mutation in the Cation Diffusion Facilitator Protein MamM Causes Single-Domain Structural Loss and Signifies Its Importance
Cited by: 16
Author(s): S. Barber-Zucker, René Uebe, Geula Davidov, Yotam Navon, Dror Sherf, Jordan H. Chill, Itamar Kass, Ronit Bitton, Dirk Schüler, Raz Zarivach
Software Mentions: 1
Published: over 8 years ago

10.1038/srep32073

A mutagenic study identifying critical residues for the structure and function of rice manganese transporter OsMTP8.1
Cited by: 17
Author(s): Xi Chen, Jiyu Li, Lihua Wang, Gang Ma, Wei Zhang
Software Mentions: 1
Published: over 8 years ago

10.1038/srep32309

Crystal Structure of Major Envelope Protein VP24 from White Spot Syndrome Virus
Cited by: 9
Author(s): Lifang Sun, Su Y, Yunmeng Zhao, Zhenfang Fu, Yunkun Wu
Software Mentions: 1
Published: about 8 years ago

10.1038/srep32244

Abcb1 in Pigs: Molecular cloning, tissues distribution, functional analysis, and its effect on pharmacokinetics of enrofloxacin
Cited by: 19
Author(s): Tingting Guo, Jinhu Huang, Zhang Hong-yu, Lingling Dong, Dawei Guo, Lin Guo, Fang He, Zohaib Ahmed Bhutto, Liping Wang
Software Mentions: 1
Published: about 8 years ago

10.3390/ijms18091898

Potential Roles of Intrinsic Disorder in Maternal-Effect Proteins Involved in the Maintenance of DNA Methylation
Cited by: 6
Author(s): Hongliang Liu, Qing Wei, Chenyang Huang, Yong Zhang, Zekun Guo
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms18091968

Tumor Inhibitory Effect of IRCR201, a Novel Cross-Reactive c-Met Antibody Targeting the PSI Domain
Cited by: 9
Author(s): Hyunkyu Park, Donggeon Kim, Eun‐Mi Kim, K. Jason, Hee Won Lee, Suji Yu, Joosung Oh, Seok Hyung Kim, Yong‐Ho Yoon, Do Hyun Nam
Software Mentions: 1
Published: about 7 years ago

10.1038/srep32371

The BR domain of PsrP interacts with extracellular DNA to promote bacterial aggregation; structural insights into pneumococcal biofilm formation
Cited by: 24
Author(s): Tim Schulte, Cecilia Mikaelsson, Audrey Beaussart, Alexey Kikhney, M.G. Deshmukh, Sebastian Wolniak, Anuj Pathak, Christine Ebel, Jonas Löfling, Federico Fogolari, Birgitta Henriques‐Normark, Yves F. Dufrêne, Dmitri I. Svergun, Per‐Åke Nygren, Adnane Achour
Software Mentions: 1
Published: about 8 years ago

10.3390/ijms18112398

Identification, Expression, and Functional Analysis of the Fructokinase Gene Family in Cassava
Cited by: 17
Author(s): Yuan Yao, Meiyu Geng, Xiaohui Wu, Chong Sun, Yunlin Wang, Xia Chen, Lei Shang, Xiaohua Lü, Li Zhan, Ruimei Li, Shaoping Fu, Ran Duan, Jiao Liu, Xinwen Hu, Jiao Guo
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms18122623

Predictive and Experimental Approaches for Elucidating Protein–Protein Interactions and Quaternary Structures
Cited by: 14
Author(s): John Oliver Nealon, Limcy Seby Philomina, Liam J. McGuffin
Software Mentions: 1
Published: almost 7 years ago

10.1093/bioinformatics/bty818

PySFD: comprehensive molecular insights from significant feature differences detected among many simulated ensembles
Cited by: 3
Author(s): Sebastian Stolzenberg
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms19010060

Structure and Molecular Dynamics Simulations of Protein Tyrosine Phosphatase Non-Receptor 12 Provide Insights into the Catalytic Mechanism of the Enzyme
Cited by: 7
Author(s): Hao Dong, Francesco Zonta, Shanshan Wang, Ke Song, Xin He, Mei He, Yan Nie, Sheng Li
Software Mentions: 1
Published: almost 7 years ago

10.1038/srep33477

A Novel Assay for Screening Inhibitors Targeting HIV Integrase LEDGF/p75 Interaction Based on Ni2+ Coated Magnetic Agarose Beads
Cited by: 5
Author(s): Dawei Zhang, Hong He, Mengmeng Liu, Meng Zhang, Shun‐Xing Guo
Software Mentions: 1
Published: about 8 years ago

10.1038/srep33468

Characterisation of a flavonoid ligand of the fungal protein Alt a 1
Cited by: 25
Author(s): María Garrido‐Arandia, Javier Silva‐Navas, Carmen Ramírez-Castillejo, Nuria Cubells-Baeza, Cristina Gómez‐Casado, Domingo Barber, Juan C. del Pozo, Pablo González Melendi, Luis F. Pacios, Araceli Díaz‐Perales
Software Mentions: 1
Published: about 8 years ago

10.1038/srep33474

β-Hairpin of Islet Amyloid Polypeptide Bound to an Aggregation Inhibitor
Cited by: 33
Author(s): Ewa A. Mirecka, Sophie Feuerstein, Lothar Gremer, Gunnar F. Schröder, Matthias Stoldt, Dieter Willbold, Wolfgang Hoyer
Software Mentions: 1
Published: about 8 years ago

10.1038/srep33391

Structural Analysis of the Hg(II)-Regulatory Protein Tn501 MerR from Pseudomonas aeruginosa
Cited by: 31
Author(s): Dan Wang, Shanqing Huang, Pingying Liu, Xichun Liu, Yafeng He, Weizhong Chen, Qingyuan Hu, T. Wei, Jianhua Gan, Jing Ma, Hao Chen
Software Mentions: 1
Published: about 8 years ago

10.1038/srep33314

Fluorescent protein-scorpion toxin chimera is a convenient molecular tool for studies of potassium channels
Cited by: 28
Author(s): Alexey I. Kuzmenkov, Oksana V. Nekrasova, Kseniya S. Kudryashova, Steve Peigneur, Jan Tytgat, Alexey V. Stepanov, Mikhaǐl P. Kirpichnikov, Eugene V. Grishin, Аlexey V. Feofanov, Alexander A. Vassilevski
Software Mentions: 1
Published: about 8 years ago

10.1038/srep33903

Structure and catalytic mechanism of monodehydroascorbate reductase, MDHAR, from Oryza sativa L. japonica
Cited by: 37
Author(s): Ae Kyung Park, Il-Sup Kim, Hackwon Do, Byoung Wook Jeon, Chang Woo Lee, Soo Jung Roh, Seung Chul Shin, Hyun Park, Young-Saeng Kim, Yul-Ho Kim, Ho-Sung Yoon, Jun Hyuck Lee, Han-Woo Kim
Software Mentions: 1
Published: about 8 years ago

10.1038/srep34134

The UPR inducer DPP23 inhibits the metastatic potential of MDA-MB-231 human breast cancer cells by targeting the Akt–IKK–NF-κB–MMP-9 axis
Cited by: 30
Author(s): Soon Young Shin, Chang Gun Kim, You Jung Jung, Yoongho Lim, Young Han Lee
Software Mentions: 1
Published: about 8 years ago

10.1038/srep33797

A general and efficient strategy for generating the stable enzymes
Cited by: 52
Author(s): Xiaofei Zhang, Guangyu Yang, Yong Zhang, Yuan Xie, Stephen G. Withers, Yan Feng
Software Mentions: 1
Published: about 8 years ago

10.3390/ijms19010198

Understanding the Role of Intrinsic Disorder of Viral Proteins in the Oncogenicity of Different Types of HPV
Cited by: 21
Author(s): Elvira Regina Tamarozzi, Silvana Giuliatti
Software Mentions: 1
Published: almost 7 years ago

10.1038/srep34269

Improved affinity at the cost of decreased specificity: a recurring theme in PDZ-peptide interactions
Cited by: 14
Author(s): O. Karlsson, Gustav Sundell, Eva Andersson, Ylva Ivarsson, Per Jemth
Software Mentions: 1
Published: about 8 years ago

10.1038/srep34686

Epitomics: IgG-epitome decoding of E6, E7 and L1 proteins from oncogenic human papillomavirus type 58
Cited by: 13
Author(s): Wan-Xiang Xu, Jian Wang, Haiping Tang, Yaping He, Qianxi Zhu, Satish Kumar Gupta, Shaohua Gu, Qiang Huang, Chaoneng Ji, Lingfeng Liu, Guiling Li, Congjian Xu, Yi Xie
Software Mentions: 1
Published: about 8 years ago

10.1038/srep34993

The unravelling of the complex pattern of tyrosinase inhibition
Cited by: 104
Author(s): Batel Deri, M. Kanteev, Mor Goldfeder, Daniel Lecina, Vı́ctor Guallar, Noam Adir, Ayelet Fishman
Software Mentions: 1
Published: about 8 years ago

10.1038/srep35326

The contribution of major histocompatibility complex contacts to the affinity and kinetics of T cell receptor binding
Cited by: 17
Author(s): Hao Zhang, Hong-Sheng Lim, Berhard Knapp, Charlotte M. Deane, Milos Aleksic, Omer Dushek, P. Anton van der Merwe
Software Mentions: 1
Published: about 8 years ago

10.1038/srep35297

High-resolution crystal structure of the therapeutic antibody pembrolizumab bound to the human PD-1
Cited by: 68
Author(s): Shoichiro Horita, Yoshihiro Nomura, Yuichi Sato, Tatsuro Shimamura, So Iwata
Software Mentions: 1
Published: about 8 years ago

Projects: pypi: PyMOL

Papers Mentioning PyMOL 8,266