pypi: PyMOL | Projects | Ecosyste.ms: Papers

10.3390/ijms18010012

Analysis to Estimate Genetic Variations in the Idarubicin-Resistant Derivative MOLT-3
Cited by: 3
Author(s): Tomoyoshi Komiyama, Atsushi Ogura, Takatsugu Hirokawa, Miao Zhijing, Hiroshi Kanazawa, Satoshi Asai, Hayato Miyachi, Hiroyuki Kobayashi
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms18030557

Molecular and Structural Characterization of the Tegumental 20.6-kDa Protein in Clonorchis sinensis as a Potential Druggable Target
Cited by: 11
Author(s): Yu-Jung Kim, Won Gi Yoo, Myoung-Ro Lee, Jung‐Mi Kang, Byoung-Kuk Na, Shin‐Hyeong Cho, Mi-Yeoun Park, Jung‐Won Ju
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms18051041

Structure, Expression, and Functional Analysis of the Hexokinase Gene Family in Cassava
Cited by: 24
Author(s): Meiyu Geng, Yuan Yao, Yunlin Wang, Xiaohui Wu, Chong Sun, Ruimei Li, Shaoping Fu, Ran Duan, Jiao Liu, Xinwen Hu, Jiao Guo
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms18051042

BDNF Binds Its Pro-Peptide with High Affinity and the Common Val66Met Polymorphism Attenuates the Interaction
Cited by: 25
Author(s): Koichi Uegaki, Haruko Kumanogoh, Toshiyuki Mizui, Takatsugu Hirokawa, Yasuyuki Ishikawa, Masami Kojima
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms18061117

Mammalian Metallothionein-3: New Functional and Structural Insights
Cited by: 62
Author(s): Milan Vašák, Gabriele Meloni
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms18061147

Mutual Regulation of NOD2 and RIG-I in Zebrafish Provides Insights into the Coordination between Innate Antibacterial and Antiviral Signaling Pathways
Cited by: 15
Author(s): Li Nie, Xiaojun Xu, Lei Xiang, Jian-zhong Shao, Jiong Chen
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms18061198

Biochemical and Computational Insights on a Novel Acid-Resistant and Thermal-Stable Glucose 1-Dehydrogenase
Cited by: 6
Author(s): Haitao Ding, Fen Biao Gao, Yong Yu, Bin Chen
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms18071408

Identification of Direct Activator of Adenosine Monophosphate-Activated Protein Kinase (AMPK) by Structure-Based Virtual Screening and Molecular Docking Approach
Cited by: 13
Author(s): Tonghui Huang, Jie Sun, Shenghan Zhou, Jian Gao, Yi Liu
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms18071535

Recombinant Lipase from Gibberella zeae Exhibits Broad Substrate Specificity: A Comparative Study on Emulsified and Monomolecular Substrate
Cited by: 12
Author(s): Fanghua Wang, Hui Zhang, Zhongyang Zhao, Ruixia Wei, Bo Yang, Yonghua Wang
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms18081680

Various Mechanisms Involve the Nuclear Factor (Erythroid-Derived 2)-Like (NRF2) to Achieve Cytoprotection in Long-Term Cisplatin-Treated Urothelial Carcinoma Cell Lines
Cited by: 13
Author(s): Margaretha A. Skowron, Günter Niegisch, Philipp Albrecht, Gommert van Koeveringe, Andrea Romano, Peter Albers, Wolfgang A. Schulz, Michèle J. Hoffmann
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms18091848

Tongue Sole CD209: A Pattern-Recognition Receptor that Binds a Broad Range of Microbes and Promotes Phagocytosis
Cited by: 16
Author(s): Shuai Jiang, Li Sun
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms18091894

Differences in Sulfotyrosine Binding amongst CXCR1 and CXCR2 Chemokine Ligands
Cited by: 11
Author(s): Natasha A. Moussouras, Anthony E. Getschman, Emily R. Lackner, Christopher T. Veldkamp, Michael B. Dwinell, Brian F. Volkman
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms18091898

Potential Roles of Intrinsic Disorder in Maternal-Effect Proteins Involved in the Maintenance of DNA Methylation
Cited by: 6
Author(s): Hongliang Liu, Qing Wei, Chenyang Huang, Yong Zhang, Zekun Guo
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms18091968

Tumor Inhibitory Effect of IRCR201, a Novel Cross-Reactive c-Met Antibody Targeting the PSI Domain
Cited by: 9
Author(s): Hyunkyu Park, Donggeon Kim, Eun‐Mi Kim, K. Jason, Hee Won Lee, Suji Yu, Joosung Oh, Seok Hyung Kim, Yong‐Ho Yoon, Do Hyun Nam
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms18112398

Identification, Expression, and Functional Analysis of the Fructokinase Gene Family in Cassava
Cited by: 17
Author(s): Yuan Yao, Meiyu Geng, Xiaohui Wu, Chong Sun, Yunlin Wang, Xia Chen, Lei Shang, Xiaohua Lü, Li Zhan, Ruimei Li, Shaoping Fu, Ran Duan, Jiao Liu, Xinwen Hu, Jiao Guo
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms18122623

Predictive and Experimental Approaches for Elucidating Protein–Protein Interactions and Quaternary Structures
Cited by: 14
Author(s): John Oliver Nealon, Limcy Seby Philomina, Liam J. McGuffin
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms19010060

Structure and Molecular Dynamics Simulations of Protein Tyrosine Phosphatase Non-Receptor 12 Provide Insights into the Catalytic Mechanism of the Enzyme
Cited by: 7
Author(s): Hao Dong, Francesco Zonta, Shanshan Wang, Ke Song, Xin He, Mei He, Yan Nie, Sheng Li
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms19010198

Understanding the Role of Intrinsic Disorder of Viral Proteins in the Oncogenicity of Different Types of HPV
Cited by: 21
Author(s): Elvira Regina Tamarozzi, Silvana Giuliatti
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms19010248

Can EGCG Alleviate Symptoms of Down Syndrome by Altering Proteolytic Activity?
Cited by: 18
Author(s): Marzena Wyganowska‐Świątkowska, Maja Matthews‐Kozanecka, Maria Borysewicz‐Lewicka, Ewa Skrzypczak‐Jankun, Jerzy Jankun
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms19020553

Stabilization of Immobilized Lipases by Intense Intramolecular Cross-Linking of Their Surfaces by Using Aldehyde-Dextran Polymers
Cited by: 30
Author(s): Alejandro H. Orrego, Roohollah Ghobadi, Sonia Moreno-Pérez, Antonio Gómez Mendoza, Gloria Fernández‐Lorente, Jóse M. Guisán, Javier Rocha-Martín
Software Mentions: 1
Published: over 8 years ago

10.1098/rsob.170248

Structural and functional studies of Spr1654: an essential aminotransferase in teichoic acid biosynthesis in Streptococcus pneumoniae
Cited by: 2
Author(s): Xiao Han, Renhua Sun, Tatyana Sandalova, Adnane Achour
Software Mentions: 1
Published: over 8 years ago

10.1098/rsob.170275

Insights into the regulatory function of the ɛ subunit from bacterial F-type ATP synthases: a comparison of structural, biochemical and biophysical data
Cited by: 21
Author(s): Alexander Krah, Mariel Zarco-Zavala, Duncan G. G. McMillan
Software Mentions: 1
Published: about 8 years ago

10.1098/rsob.190066

Structure of F 1 -ATPase from the obligate anaerobe Fusobacterium nucleatum
Cited by: 3
Author(s): J. Petri, Yoshio Nakatani, M.G. Montgomery, Scott Ferguson, D. Aragão, Andrew G. W. Leslie, Adam Heikal, John E. Walker, Gregory M. Cook
Software Mentions: 1
Published: about 7 years ago

10.1098/rsob.200010

C-terminal eYFP fusion impairs Escherichia coli MinE function
Cited by: 7
Author(s): Navaneethan Palanisamy, Mehmet Ali Öztürk, Emir Bora Akmeriç, Barbara Di Ventura
Software Mentions: 1
Published: about 6 years ago

10.1098/rsob.200041

Identification of a PGXPP degron motif in dishevelled and structural basis for its binding to the E3 ligase KLHL12
Cited by: 9
Author(s): Zhuoyao Chen, Gregory A. Wasney, S. Picaud, P. Filippakopoulos, Masoud Vedadi, Vincenzo D’Angiolella, Alex N. Bullock
Software Mentions: 1
Published: about 6 years ago

10.1098/rsob.200328

The role of disorder in RNA binding affinity and specificity
Cited by: 21
Author(s): Diana S. M. Ottoz, Luke E. Berchowitz
Software Mentions: 1
Published: over 5 years ago

10.1098/rsob.200406

Structural and biophysical characterization of the tandem substrate-binding domains of the ABC importer GlnPQ
Cited by: 6
Author(s): Evelyn Ploetz, Gea K. Schuurman-Wolters, Niels Zijlstra, Amarins W. Jager, Douglas A. Griffith, Albert Guskov, Giorgos Gouridis, Bert Poolman, Thorben Cordes
Software Mentions: 1
Published: over 5 years ago

10.1098/rsob.210080

Ghrelin octanoylation by ghrelin O -acyltransferase: protein acylation impacting metabolic and neuroendocrine signalling
Cited by: 8
Author(s): Tasha R. Davis, Mariah R. Pierce, Sadie X. Novak, James L. Hougland
Software Mentions: 1
Published: about 5 years ago

10.1098/rsif.2020.0859

The spatial network of skeletal proteins in a stony coral
Cited by: 14
Author(s): Manjula P. Mummadisetti, Jeana L. Drake, Paul G. Falkowski
Software Mentions: 1
Published: over 5 years ago

10.1098/rsif.2013.0453

The structure of latherin, a surfactant allergen protein from horse sweat and saliva
Cited by: 42
Author(s): Steven J. Vance, Rhona E. McDonald, Alan Cooper, Brian O. Smith, Malcolm W. Kennedy
Software Mentions: 1
Published: almost 13 years ago

10.1098/rsif.2020.0591

Computational analysis of dynamic allostery and control in the SARS-CoV-2 main protease
Cited by: 36
Author(s): Igors Dubanevics, Tom McLeish
Software Mentions: 1
Published: over 5 years ago

10.1039/c5qo00436e

The photochemical thiol–ene reaction as a versatile method for the synthesis of glutathione S-conjugates targeting the bacterial potassium efflux system Kef
Cited by: 13
Author(s): Jess Healy, Tim Rasmussen, Samantha Miller, Ian R. Booth, Stuart J. Conway
Software Mentions: 1
Published: over 10 years ago

10.1186/2191-2858-3-6

β-Keto esters from ketones and ethyl chloroformate: a rapid, general, efficient synthesis of pyrazolones and their antimicrobial, in silico and in vitro cytotoxicity studies
Cited by: 17
Author(s): R. Venkat Ragavan, K. Ashok Kumar, V. Vijayakumar, S. Sarveswari, Sudha Ramaiah, Anand Anbarasu, Sivashanmugam Karthikeyan, Giridharan Periyasamy, N. Suchetha Kumari
Software Mentions: 1
Published: almost 13 years ago

10.1016/j.jsbmb.2012.12.014

The structural biology of oestrogen metabolism
Cited by: 124
Author(s): Mark Thomas, Barry V. L. Potter
Software Mentions: 1
Published: almost 13 years ago

10.1016/j.jsb.2013.02.010

Structure of the ParM filament at 8.5Å resolution
Cited by: 19
Author(s): P. Gayathri, Takashi Fujii, Keiichi Namba, Jan Löwe
Software Mentions: 1
Published: almost 13 years ago

10.1016/j.jsb.2018.04.003

Comparison of the 3D structures of mouse and human α-synuclein fibrils by solid-state NMR and STEM
Cited by: 14
Author(s): Songhwan Hwang, Pascal Fricke, Maximilian Zinke, Karin Giller, Joseph S. Wall, Dietmar Riedel, Stefan Becker, Adam Lange
Software Mentions: 1
Published: over 7 years ago

10.1016/j.jsb.2008.03.011

Myosin filament 3D structure in mammalian cardiac muscle
Cited by: 32
Author(s): Hind A. AL-Khayat, Edward P. Morris, Robert W. Kensler, John M. Squire
Software Mentions: 1
Published: almost 18 years ago

10.1016/j.yjsbx.2019.100015

Structural analysis of missense mutations occurring in the DNA-binding domain of HSF4 associated with congenital cataracts
Cited by: 3
Author(s): Zhao Xiao, Ling Guo, Yang Zhang, Liwei Cui, Yujie Dai, Liehuang Zhu, Qinghua Zhang, Sheng Wang, Wei Liu
Software Mentions: 1
Published: over 6 years ago

10.1016/j.yjsbx.2018.100001

Structural and biochemical characterization of the pleckstrin homology domain of the RhoGEF P-Rex2 and its regulation by PIP3
Cited by: 2
Author(s): Jennifer N. Cash, Prateek V. Sharma, John J.G. Tesmer
Software Mentions: 1
Published: over 7 years ago

10.1016/j.yjsbx.2019.100014

Structural insights into human Arginase-1 pH dependence and its inhibition by the small molecule inhibitor CB-1158
Cited by: 17
Author(s): Yvonne Grobben, Joost C.M. Uitdehaag, Nicole Willemsen‐Seegers, Werner W.A. Tabak, Jos de Man, Rogier C. Buijsman, Guido J.R. Zaman
Software Mentions: 1
Published: over 6 years ago

10.1007/s10969-014-9176-z

Structural characterization of a hypothetical protein: a potential agent involved in trimethylamine metabolism in Catenulispora acidiphila
Cited by: 6
Author(s): E.V. Filippova, Chi Hao Luan, Sara Fernandez Dunne, O. Kiryukhina, G. Minasov, L. Shuvalova, W.F. Anderson
Software Mentions: 1
Published: over 12 years ago

10.1107/S0909049513020712

Crystal structure of UDP-glucose:anthocyanidin 3-O-glucosyltransferase fromClitoria ternatea
Cited by: 40
Author(s): Takeshi Hiromoto, Eijiro Honjo, Taro Tamada, Naonobu Noda, Kohei Kazuma, Masahiko Suzuki, Ryota Kuroki
Software Mentions: 1
Published: almost 13 years ago

10.1107/S0909049513021328

Structural and biochemical analysis of a thermostable membrane-bound stomatin-specific protease
Cited by: 3
Author(s): Hideshi Yokoyama, Daisuke Kobayashi, Naoto Takizawa, Satoshi Fujii, Ichiro Matsui
Software Mentions: 1
Published: almost 13 years ago

10.1107/S0909049510036824

Using lanthanoid complexes to phase large macromolecular assemblies
Cited by: 11
Author(s): R. Talon, Richard Kahn, M. Asunción Durá, Olivier Maury, F.M.D. Vellieux, Bruno Franzetti, Éric Girard
Software Mentions: 1
Published: over 15 years ago

10.1107/S1600577520004002

ID30A-3 (MASSIF-3) – a beamline for macromolecular crystallography at the ESRF with a small intense beam
Cited by: 19
Author(s): David von Stetten, Philippe Carpentier, David Flot, Antonia Beteva, Hugo Caserotto, Fabien Dobias, Matias Guijarro, Thierry Giraud, Mario Lentini, Seán McSweeney, Antoine Royant, Sébastien Petitdemange, Jérémy Sinoir, John Surr, Olof Svensson, Pascal Théveneau, Gordon A. Leonard, Christoph Mueller-Dieckmann
Software Mentions: 1
Published: about 6 years ago

10.1107/S0909049513021298

Structure of the human-heart fatty-acid-binding protein 3 in complex with the fluorescent probe 1-anilinonaphthalene-8-sulphonic acid
Cited by: 22
Author(s): Mika Hirose, Shigeru Sugiyama, Hanako Ishida, Mayumi Niiyama, Daisuke Matsuoka, Toshiaki Hara, Eiichi Mizohata, Satoshi Murakami, Tsuyoshi Inoue, Shigeru Matsuoka, Michio Murata
Software Mentions: 1
Published: almost 13 years ago

10.1107/S090904951302373X

High-resolution X-ray crystal structure of bovine H-protein using the high-pressure cryocooling method
Cited by: 11
Author(s): Akifumi Higashiura, Kazunori Ohta, Mika Masaki, Masaru Satô, Koji Inaka, Hiroaki Tanaka, Atsushi Nakagawa
Software Mentions: 1
Published: almost 13 years ago

10.1107/S0909049510033595

Structure of the inhibitor complex of old yellow enzyme fromTrypanosoma cruzi
Cited by: 12
Author(s): Keishi Yamaguchi, Naoki Okamoto, Keiji Tokuoka, Shigeru Sugiyama, Nahoko Uchiyama, Hideki Matsumura, Koji Inaka, Yoshihiro Urade, Tsuyoshi Inoue
Software Mentions: 1
Published: over 15 years ago

10.1107/S0909049513021341

A docking study of enhanced intracellular survival protein fromMycobacterium tuberculosiswith human DUSP16/MKP-7
Cited by: 5
Author(s): Hye Jin Yoon, Kyoung Hoon Kim, Jin Kuk Yang, Se Won Suh, Hyun-Sik Kim, Soonmin Jang
Software Mentions: 1
Published: almost 13 years ago

10.1111/jth.14418

Plasma kallikrein structure reveals apple domain disc rotated conformation compared to factor XI
Cited by: 21
Author(s): Chan Li, Kayleigh M Voos, Monika Pathak, G. G. Hall, Keith R. McCrae, Ingrid Dreveny, Renhao Li, Jonas Emsley
Software Mentions: 1
Published: about 7 years ago

10.1155/2020/3007984

Organophosphorus Nerve Agents: Types, Toxicity, and Treatments
Cited by: 51
Author(s): Sudisha Mukherjee, Rinkoo Devi Gupta
Software Mentions: 1
Published: almost 6 years ago

10.1186/1750-1172-7-45

Assessment of the structural and functional impact of in-frame mutations of the DMD gene, using the tools included in the eDystrophin online database
Cited by: 44
Author(s): Aurélie Nicolas, Céline Lucchetti-Miganeh, Rabah Ben Yaou, Jean‐Claude Kaplan, Jamel Chelly, F. Leturcq, Frédérique Barloy-Hubler, Élisabeth Le Rumeur
Software Mentions: 1
Published: almost 14 years ago

10.1186/1750-1172-9-80

Mutations in zinc finger 407 [ZNF407] cause a unique autosomal recessive cognitive impairment syndrome
Cited by: 16
Author(s): Marios Kambouris, Rachid C. Maroun, Tawfeg Ben‐Omran, Yasser Al-Sarraj, Khaoula Errafii, Rehab Ali, Hala Boulos, Patrick A. Curmi, Hatem El‐Shanti
Software Mentions: 1
Published: about 12 years ago

10.1186/s13023-015-0244-7

Natural disease history and characterisation of SUMF1 molecular defects in ten unrelated patients with multiple sulfatase deficiency
Cited by: 31
Author(s): Frédérique Sabourdy, Lionel Mourey, Emmanuelle Le Trionnaire, Nathalie Bednarek, Catherine Caillaud, Yves Chaix, Marie‐Ange Delrue, A. Dusser, Roseline Froissart, Roselyne Garnotel, Nathalie Guffon, André Mégarbané, Hélène Ogier de Baulny, Jean‐Michel Pedespan, Samia Pichard, Vassili Valayannopoulos, Alain Verloès, Thierry Levade
Software Mentions: 1
Published: over 11 years ago

10.1186/s13023-015-0235-8

Impaired osteoblast and osteoclast function characterize the osteoporosis of Snyder - Robinson syndrome
Cited by: 20
Author(s): Jessica S. Albert, Nisan Bhattacharyya, Lynne A. Wolfe, William P. Bone, Valerie V. Maduro, John Accardi, David R. Adams, Charles E. Schwartz, Joy Norris, Tim Wood, Rachel I Gafni, Michael T. Collins, Laura L. Tosi, Thomas C. Markello, William A. Gahl, Cornelius F. Boerkoel
Software Mentions: 1
Published: over 11 years ago

10.1186/1750-1172-10-S1-P28

Five novel TTR variants: associated phenotypes and structural consequences
Cited by: 1
Author(s): Dorota Rowczenio, Helen Lachmann, Ashutosh Wechalekar, Janet A. Gilbertson, Marianna Fontana, Carol Whelan, Julian D. Gillmore, Philip N. Hawkins
Software Mentions: 1
Published: over 10 years ago

10.1186/s13023-018-0885-4

Missense mutation in SLIT2 associated with congenital myopia, anisometropia, connective tissue abnormalities, and obesity
Cited by: 5
Author(s): Katherine Y. Liu, Jesse D. Sengillo, Gabriel Vélez, Ruben Jauregui, Lynn Y. Sakai, Irene H. Maumenee, Alexander G. Bassuk, Vinit B. Mahajan, Stephen H. Tsang
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13023-019-1070-0

Molecular diagnosis of hereditary spherocytosis by multi-gene target sequencing in Korea: matching with osmotic fragility test and presence of spherocyte
Cited by: 21
Author(s): Hyoung Soo Choi, Qute Choi, Jung‐Ah Kim, Kyongok Im, Si Nae Park, Yoomi Park, Hee Young Shin, Hyoung Jin Kang, Hoon Kook, Seon‐Young Kim, Soo-Jeong Kim, Inho Kim, Ji Yoon Kim, Hawk Kim, Kyung Duk Park, Kyung Bae Park, Meerim Park, Soo Young Park, Eun Sil Park, Jeong-A Park, Jun Eun Park, Ji Kyoung Park, Hee Jo Baek, Jeong Ho Seo, Ye Jee Shim, Hyo Seop Ahn, Keon Hee Yoo, Hoi Soo Yoon, Young‐Woong Won, Kun Soo Lee, Kwang Chul Lee, Mee Jeong Lee, Sun Ah Lee, Jun Ah Lee, Jae Min Lee, Jae Hee Lee, Ji Won Lee, Young Tak Lim, Hyun Joo Jung, Hee Won Chueh, Eun Jin Choi, Hye Lim Jung, Ju Han Kim, Dong Hoon Lee
Software Mentions: 1
Published: about 7 years ago

10.1186/s13023-019-1283-2

Novel phenotypes and genotypes in Antley-Bixler syndrome caused by cytochrome P450 oxidoreductase deficiency: based on the first cohort of Chinese children
Cited by: 11
Author(s): Lijun Fan, Xiaohan Ren, Yanning Song, Chang Su, Junfen Fu, Chunxiu Gong
Software Mentions: 1
Published: over 6 years ago

10.1186/s13023-020-01459-9

Clinical and molecular spectrum of 46,XY disorders of sex development that harbour MAMLD1 variations: case series and review of literature
Cited by: 12
Author(s): Lele Li, Chang Su, Lijun Fan, Fusheng Gao, Xuejun Liang, Chunxiu Gong
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13023-021-01692-w

Molecular mechanics and dynamic simulations of well-known Kabuki syndrome-associated KDM6A variants reveal putative mechanisms of dysfunction
Cited by: 10
Author(s): Young‐In Chi, Timothy J. Stodola, Thiago M. de Assuncao, Elise N. Leverence, Swarnendu Tripathi, Nikita R. Dsouza, Angela Mathison, Donald Basel, Brian F. Volkman, Brian C. Smith, Gwen Lomberk, Michael T. Zimmermann, Raúl Urrutia
Software Mentions: 1
Published: over 5 years ago

10.1186/s13023-021-01731-6

Clinical and molecular characterization of patients with adenylosuccinate lyase deficiency
Cited by: 10
Author(s): Gerarda Mastrogiorgio, Marina Macchiaiolo, Paola Sabrina Buonuomo, Emanuele Bellacchio, Matteo Bordi, Davide Vecchio, Kari Payne Brown, Natalie Karen Watson, Benedetta Contardi, Francesco Cecconi, Marco Tartaglia, Andrea Bartuli
Software Mentions: 1
Published: over 5 years ago

10.1186/s13023-021-01902-5

Consanguinity-based analysis of exome sequencing yields likely genetic causes in patients with inherited retinal dystrophy
Cited by: 4
Author(s): Ren‐Juan Shen, Jungang Wang, Yang Li, Zi‐Bing Jin
Software Mentions: 1
Published: about 5 years ago

10.1186/s13023-021-01937-8

Clinical relevance of targeted exome sequencing in patients with rare syndromic short stature
Cited by: 4
Author(s): Gilyazetdinov Kamil, Ju Young Yoon, Sukdong Yoo, Chong Kun Cheon
Software Mentions: 1
Published: about 5 years ago

10.1186/s13023-021-01951-w

A large consanguineous family with a homozygous Metabotropic Glutamate Receptor 7 (mGlu7) variant and developmental epileptic encephalopathy: Effect on protein structure and ligand affinity
Cited by: 4
Author(s): Marwa Ben Jdila, Cécile Mignon-Ravix, Sihem Ben Ncir, Fatma Kammoun, Faiza Fakhfakh, Laurent Villard, Chahnez Triki
Software Mentions: 1
Published: almost 5 years ago

10.1186/s40409-017-0109-8

Heterologous fibrin sealant derived from snake venom: from bench to bedside – an overview
Cited by: 57
Author(s): Rui Seabra Ferreira, Luciana Curtolo de Barros, Luciana Patrícia Fernandes Abbade, Sílvia Regina Catharino Sartori Barraviera, Maria Regina Cavariani Silvares, Letícia Gomes de Pontes, Lucilene Delazari dos Santos, Benedito Barraviera
Software Mentions: 1
Published: over 9 years ago

10.1590/1678-9199-JVATITD-2020-0127

Identification and recombinant expression of an antimicrobial peptide (cecropin B-like) from soybean pest Anticarsia gemmatalis
Cited by: 0
Author(s): Luís Felipe Costa Ramos, João Henrique de Oliveira Rangel, Guilherme C. Andrade, Carolina Lixa, Lívia Vieira Araujo de Castilho, Fábio César Sousa Nogueira, Anderson S. Pinheiro, Fabio M. Gomes, Cristiane D. Anobom, Rodrigo Volcan Almeida, Danielle Maria Perpétua de Oliveira
Software Mentions: 1
Published: over 5 years ago

10.1128/JVI.00058-19

Influenza Virus with Increased pH of Hemagglutinin Activation Has Improved Replication in Cell Culture but at the Cost of Infectivity in Human Airway Epithelium
Cited by: 23
Author(s): Anika Singanayagam, Maria Zambon, William Barclay
Software Mentions: 1
Published: almost 7 years ago

10.1128/JVI.00587-21

Receptor Switching in Newly Evolved Adeno-associated Viruses
Cited by: 10
Author(s): L. Patrick Havlik, Anshuman Das, Mario Mietzsch, Daniel K. Oh, Jonathan Ark, Robert McKenna, Mavis Agbandje‐McKenna, Aravind Asokan
Software Mentions: 1
Published: almost 5 years ago

10.1128/JVI.02985-15

Molecular Basis of the Divergent Immunogenicity of Two Pediatric Tick-Borne Encephalitis Virus Vaccines
Cited by: 22
Author(s): Yvonne Beck, Richard Fritz, Klaus K. Orlinger, Stefan Kiermayr, Reinhard Ilk, Daniel Portsmouth, Eva-Maria Pöllabauer, Alexandra Löw-Baselli, Annett Hessel, Doris Kölch, M. Keith Howard, Perry Barrett, Thomas R. Kreil
Software Mentions: 1
Published: over 10 years ago

10.1128/JVI.02100-16

Virion Structure of Black Queen Cell Virus, a Common Honeybee Pathogen
Cited by: 32
Author(s): Radovan Spurný, Antonín Přidal, Lenka Pálková, Hoa Khanh Tran Kiem, Joachim R. de Miranda, Pavel Plevka
Software Mentions: 1
Published: over 9 years ago

10.1128/JVI.01248-18

Structure-Guided Identification of a Nonhuman Morbillivirus with Zoonotic Potential
Cited by: 22
Author(s): Nurshariza Abdullah, James Kelly, Stephen C. Graham, Jamie Birch, Daniel Gonçalves-Carneiro, Tim Mitchell, Robin N Thompson, Katrina A. Lythgoe, Nicola Logan, Margaret J. Hosie, Vassiliy N. Bavro, Brian J. Willett, Michael P. Heaton, Dalan Bailey
Software Mentions: 1
Published: over 7 years ago

10.1128/JVI.01685-17

Differential Immunodominance Hierarchy of CD8 + T-Cell Responses in HLA-B*27:05- and -B*27:02-Mediated Control of HIV-1 Infection
Cited by: 13
Author(s): Emily Adland, Matilda Hill, Nora Lavandier, Anna Csala, Anne Edwards, Fabian Chen, Marek Radkowski, Justyna D. Kowalska, Dimitrios Paraskevis, Angelos Hatzakis, Humberto Valenzuela-Ponce, Katja Pfafferott, Ian Williams, Pierre Pellegrino, Persephone Borrow, Masahiko Mori, Jürgen K. Rockstroh, Julia G. Prado, Beatriz Mothe, Judith Dalmau, Javier Martínez-Picado, Gareth Tudor‐Williams, John Frater, Anette Stryhn, Søren Buus, Gustavo Reyes Terán, S. Mallal, Mina John, Susan Buchbinder, Gregory D. Kirk, Jeffrey N. Martin, Nelson Michael, Jacques Fellay, Steven G. Deeks, Bruce F. Walker, Santiago Ávila‐Ríos, David K. Cole, Christian Berthou, Mary Carrington, Philip Goulder
Software Mentions: 1
Published: over 8 years ago

10.1128/JVI.01773-17

A Mechanism for Priming and Realignment during Influenza A Virus Replication
Cited by: 31
Author(s): Judith Oymans, Aartjan J.W. te Velthuis
Software Mentions: 1
Published: over 8 years ago

10.1128/JVI.01001-19

Persistence of Hepatitis B Virus DNA and the Tempos between Virion Secretion and Genome Maturation in a Mouse Model
Cited by: 6
Author(s): Szu-Yao Wu, Ya‐Shu Chang, Tien-Hua Chu, Chiaho Shih
Software Mentions: 1
Published: over 6 years ago

10.1128/JVI.02005-18

Structural Basis of Nanobodies Targeting the Prototype Norovirus
Cited by: 21
Author(s): Kerstin Ruoff, Turgay Kilic, J Devant, A.D. Koromyslova, Alessa Ringel, A. Hempelmann, Celina Geiß, Juliane Graf, Michelle Haas, Imme Roggenbach, Grant S. Hansman
Software Mentions: 1
Published: over 7 years ago

10.1128/JVI.00976-20

Coevolution of Adeno-associated Virus Capsid Antigenicity and Tropism through a Structure-Guided Approach
Cited by: 37
Author(s): L. Patrick Havlik, Katherine E. Simon, J. W. G. Smith, Kelli A. Klinc, Longping V. Tse, Daniel K. Oh, Marco M. Fanous, Rita M. Meganck, Mario Mietzsch, Jürgen A. Kleinschmidt, Mavis Agbandje‐McKenna, Aravind Asokan
Software Mentions: 1
Published: almost 6 years ago

10.1128/JVI.01627-18

Amino Acid Residue 217 in the Hemagglutinin Glycoprotein Is a Key Mediator of Avian Influenza H7N9 Virus Antigenicity
Cited by: 19
Author(s): Pengxiang Chang, Joshua E Sealy, Jean-Rémy Sadeyen, Munir Iqbal
Software Mentions: 1
Published: over 7 years ago

10.1128/JVI.01979-13

Limits of Structural Plasticity in a Picornavirus Capsid Revealed by a Massively Expanded Equine Rhinitis A Virus Particle
Cited by: 21
Author(s): Saskia E. Bakker, Elisabetta Groppelli, Arwen R. Pearson, Peter G. Stockley, David J. Rowlands, Neil A. Ranson
Software Mentions: 1
Published: about 12 years ago

10.1128/JVI.01586-16

Increasing Type 1 Poliovirus Capsid Stability by Thermal Selection
Cited by: 47
Author(s): Oluwapelumi O. Adeyemi, Clare Nicol, Nicola J. Stonehouse, David J. Rowlands
Software Mentions: 1
Published: over 9 years ago

10.1128/JVI.02305-16

Association of Human Papillomavirus 16 E2 with Rad50-Interacting Protein 1 Enhances Viral DNA Replication
Cited by: 5
Author(s): Karen Campos-León, Kalpanee Wijendra, Abida Siddiqa, Ieisha Pentland, Katherine M. Feeney, Alison Knapman, Rachel C. Davies, Elliot J. Androphy, Joanna L Parish
Software Mentions: 1
Published: over 9 years ago

10.1128/JVI.02666-15

Structural, Mechanistic, and Antigenic Characterization of the Human Astrovirus Capsid
Cited by: 27
Author(s): Royce L. York, Payam A. Yousefi, Walter A. Bogdanoff, Sara T. Haile, Sarvind Tripathi, Rebecca M. DuBois
Software Mentions: 1
Published: over 10 years ago

10.1128/JVI.00218-17

Immune Escape Variants of H9N2 Influenza Viruses Containing Deletions at the Hemagglutinin Receptor Binding Site Retain Fitness In Vivo and Display Enhanced Zoonotic Characteristics
Cited by: 33
Author(s): Thomas P. Peacock, D.J. Benton, Joe James, Jean-Rémy Sadeyen, Pengxiang Chang, Joshua E Sealy, Juliet E. Bryant, Stephen R. Martin, Holly Shelton, William Barclay, Munir Iqbal
Software Mentions: 1
Published: almost 9 years ago

10.1128/JVI.00145-17

Mouse Saliva Inhibits Transit of Influenza Virus to the Lower Respiratory Tract by Efficiently Blocking Influenza Virus Neuraminidase Activity
Cited by: 12
Author(s): Brad Gilbertson, Wendy Ng, Simon Crawford, Jennifer L. McKimm-Breschkin, Lorena E. Brown
Software Mentions: 1
Published: almost 9 years ago

10.1128/JVI.01403-18

Antigenicity and Immunogenicity of Differentially Glycosylated Hepatitis C Virus E2 Envelope Proteins Expressed in Mammalian and Insect Cells
Cited by: 50
Author(s): Richard A. Urbanowicz, Ruixue Wang, John E. Schiel, Zhen–Yong Keck, Melissa C. Kerzic, Patrick Lau, Sampath Rangarajan, Kyle Garagusi, Lianjiang Tan, Johnathan D. Guest, Jonathan K. Ball, Brian G. Pierce, Roy A. Mariuzza, Steven K. H. Foung, Thomas R. Fuerst
Software Mentions: 1
Published: over 7 years ago

10.1128/JVI.00811-17

Increased, Durable B-Cell and ADCC Responses Associated with T-Helper Cell Responses to HIV-1 Envelope in Macaques Vaccinated with gp140 Occluded at the CD4 Receptor Binding Site
Cited by: 5
Author(s): Willy Bogers, Susan W. Barnett, Herman Oostermeijer, Ivonne G. Nieuwenhuis, Niels Beenhakker, Daniëlla Mortier, Petra Mooij, Gerrit Koopman, Edmund Remarque, Grégoire Martin, Rachel Lai, Antu Dey, Yuliang Sun, Brian Burke, Guido Ferrari, David C. Montefiori, Loı̈c Martin, David A. Davis, Indresh K. Srivastava, Jonathan L. Heeney
Software Mentions: 1
Published: almost 9 years ago

10.1128/JVI.01643-17

Identification of a Critical and Conformational Neutralizing Epitope in Human Adenovirus Type 4 Hexon
Cited by: 10
Author(s): Xingui Tian, Hongling Qiu, Zhichao Zhou, Shouli Wang, Ye Fan, Xiao Li, Ruiai Chu, Haitao Li, Hui Wang
Software Mentions: 1
Published: over 8 years ago

10.1128/JVI.01853-16

The Cellular DNA Helicase ChlR1 Regulates Chromatin and Nuclear Matrix Attachment of the Human Papillomavirus 16 E2 Protein and High-Copy-Number Viral Genome Establishment
Cited by: 14
Author(s): Leanne Harris, Laura McFarlane-Majeed, Karen Campos-León, Sally Roberts, Joanna L Parish
Software Mentions: 1
Published: over 9 years ago

10.1128/JVI.02097-17

Unexpected Functional Divergence of Bat Influenza Virus NS1 Proteins
Cited by: 8
Author(s): Hannah L. Turkington, Mindaugas Juozapaitis, Nikos Tsolakos, Eugenia Corrales-Aguilar, Martin Schwemmle, Benjamin G. Hale
Software Mentions: 1
Published: over 8 years ago

10.1128/JVI.00986-19

Multiple Pathways To Avoid Beta Interferon Sensitivity of HIV-1 by Mutations in Capsid
Cited by: 16
Author(s): Tahmina Sultana, João I. Mamede, Akatsuki Saito, Hirotaka Ode, Kyotaro Nohata, Romy Cohen, Emi E. Nakayama, Yoshinori Iwatani, Masahiro Yamashita, Thomas J. Hope, Tatsuo Shioda
Software Mentions: 1
Published: over 6 years ago

10.1128/JVI.00175-20

Structures of the Mononegavirales Polymerases
Cited by: 24
Author(s): Bo Liang
Software Mentions: 1
Published: over 5 years ago

10.1128/JVI.01775-17

Initiation, Elongation, and Realignment during Influenza Virus mRNA Synthesis
Cited by: 26
Author(s): Aartjan J.W. te Velthuis, Judith Oymans
Software Mentions: 1
Published: over 8 years ago

10.1128/JVI.00493-16

Mutants at the 2-Fold Interface of Adeno-associated Virus Type 2 (AAV2) Structural Proteins Suggest a Role in Viral Transcription for AAV Capsids
Cited by: 24
Author(s): Fikret Aydemir, Maxim Salganik, Justyna Resztak, Jasbir Singh, Antonette Bennett, Mavis Agbandje‐McKenna, Nicholas Muzyczka
Software Mentions: 1
Published: almost 10 years ago

10.1128/JVI.02066-17

Escape of Hepatitis C Virus from Epitope I Neutralization Increases Sensitivity of Other Neutralization Epitopes
Cited by: 20
Author(s): Jun Gu, Joshua M. Hardy, Irene Boo, Patricia Vietheer, Kathleen McCaffrey, Yousef M O Alhammad, Abha Chopra, Silvana Gaudieri, Pantelis Poumbourios, F. Coulibaly, Heidi E. Drummer
Software Mentions: 1
Published: about 8 years ago

10.1128/JVI.02423-20

A Novel Antigenic Site Spanning Domains I and III of the Zika Virus Envelope Glycoprotein Is the Target of Strongly Neutralizing Human Monoclonal Antibodies
Cited by: 2
Author(s): Stephen Graham, Huy A. Tu, Benjamin D. McElvany, Nancy R. Graham, Ariadna Grinyó, Edgar Davidson, Benjamin J. Doranz, Sean A. Diehl, Aravinda M. de Silva, Alena J. Markmann
Software Mentions: 1
Published: about 5 years ago

10.1128/JVI.01081-17

Structure-Guided Functional Annotation of the Influenza A Virus NS1 Protein Reveals Dynamic Evolution of the p85β-Binding Site during Circulation in Humans
Cited by: 17
Author(s): António M. Lopes, Patricia Domingues, Roland Zell, Benjamin G. Hale
Software Mentions: 1
Published: over 8 years ago

10.1128/JVI.01849-20

The Fiber Knob Protein of Human Adenovirus Type 49 Mediates Highly Efficient and Promiscuous Infection of Cancer Cell Lines Using a Novel Cell Entry Mechanism
Cited by: 8
Author(s): Alex Baker, James A. Davies, Emily A. Bates, Elise Moses, R.M. Mundy, Gareth Marlow, D.K. Cole, Carly M. Bliss, P.J. Rizkallah, Alan L. Parker
Software Mentions: 1
Published: over 5 years ago

10.1186/s12967-017-1129-4

Novel neuro-audiological findings and further evidence for TWNK involvement in Perrault syndrome
Cited by: 33
Author(s): Monika Ołdak, Dominika Oziębło, Agnieszka Pollak, Iwona Stępniak, Michał Łaźniewski, Urszula Lechowicz, Krzysztof Kochanek, Mariusz Furmanek, Grażyna Tacikowska, Dariusz Plewczynski, Tomasz Wolak, Rafał Płoski, Henryk Skarżyńśki
Software Mentions: 1
Published: over 9 years ago

10.1186/s12967-021-02757-x

Identification and characterization of heteroclitic peptides in TCR-binding positions with improved HLA-binding efficacy
Cited by: 7
Author(s): Beatrice Cavalluzzo, Concetta Ragone, Angela Mauriello, Annacarmen Petrizzo, Carmen Manolio, Andrea Caporale, Luigi Vitagliano, Menotti Ruvo, Franco M. Buonaguro, Maria Tagliamonte
Software Mentions: 1
Published: over 5 years ago

10.1186/s12967-020-02462-1

32A9, a novel human antibody for designing an immunotoxin and CAR-T cells against glypican-3 in hepatocellular carcinoma
Cited by: 29
Author(s): Xiaoyu Liu, Fang Gao, Lijia Jiang, Jiao Meng, Lei Ao, Ming Lü, Liming Gou, Mitchell Ho, Shaochang Jia, Fei Chen, Wei Gao
Software Mentions: 1
Published: almost 6 years ago

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Papers Mentioning PyMOL 8,266