pypi: PyMOL | Projects | Ecosyste.ms: Papers

10.1038/srep37978

Biochemical and Structural Analysis of a Novel Esterase from Caulobacter crescentus related to Penicillin-Binding Protein (PBP)
Cited by: 14
Author(s): Bum Han Ryu, Tri Duc Ngo, Woo-Kyoung Yoo, Sojeong Lee, Boo‐Young Kim, Euijoo Lee, Kyeong Kyu Kim, T. Doohun Kim
Software Mentions: 1
Published: over 9 years ago

10.1038/srep38094

Modular Architecture and Unique Teichoic Acid Recognition Features of Choline-Binding Protein L (CbpL) Contributing to Pneumococcal Pathogenesis
Cited by: 19
Author(s): Javier Gutiérrez-Fernández, Malek Saleh, Martín Alcorlo, Alejandro Gómez-Mejía, David Pantoja-Uceda, Miguel Á. Treviño, Franziska Voß, Mohammed R. Abdullah, Sergio Galán-Bartual, Jolien Seinen, Pedro A. Sánchez‐Murcia, Federico Gago, Marta Bruix, Sven Hammerschmidt, J.A. Hermoso
Software Mentions: 1
Published: over 9 years ago

10.1038/srep38363

New Insights into Molecular Organization of Human Neuraminidase-1: Transmembrane Topology and Dimerization Ability
Cited by: 40
Author(s): Pascal Maurice, Stéphanie Baud, Olga V. Bocharova, Eduard V. Bocharov, Andrei Kuznetsov, Charlotte Kawecki, Olivier Bocquet, Béatrice Romier, Laëtitia Gorisse, Maxime Ghirardi, Laurent Duca, Sébastien Blaise, Laurent Martiny, Manuel Dauchez, Roman G. Efremov, Laurent Debelle
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-018-27890-4

Characterization of influenza virus variants induced by treatment with the endonuclease inhibitor baloxavir marboxil
Cited by: 293
Author(s): Shinya Omoto, Valentina Speranzini, Takashi Hashimoto, Takeshi Noshi, Hiroto Yamaguchi, Makoto Kikuchi, Keiko Kawaguchi, Takeki Uehara, Toetsu Shishido, Akira Naito, Stephen Cusack
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-28094-6

Comparative analysis of xenobiotic metabolising N-acetyltransferases from ten non-human primates as in vitro models of human homologues
Cited by: 11
Author(s): Theodora Tsirka, Μαρία Κωνσταντοπούλου, Audrey Sabbagh, Brigitte Crouau‐Roy, Ali Ryan, Edith Sim, Sotiria Boukouvala, Giannoulis Fakis
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-28056-y

GTP-binding facilitates EB1 recruitment onto microtubules by relieving its auto-inhibition
Cited by: 6
Author(s): K. K. Gireesh, Annette D. Shine, R. Bhagya Lakshmi, Vinesh Vijayan, Tapas Manna
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-28235-x

Crystallization of a human galectin-3 variant with two ordered segments in the shortened N-terminal tail
Cited by: 36
Author(s): Andrea Flores-Ibarra, Sabine Vértesy, F.J. Medrano, Hans‐Joachim Gabius, Antonio Romero
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-28656-8

Structural insights into ubiquitin phosphorylation by PINK1
Cited by: 31
Author(s): Kei Okatsu, Yusuke Sato, Koji Yamano, Noriyuki Matsuda, Lumi Negishi, Akiko Takahashi, Atsushi Yamagata, Sakurako Goto-Ito, Masaki Mishima, Yutaka Ito, Toshihiko Oka, Keiji Tanaka, Shuya Fukai
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-28752-9

Structure and energy based quantitative missense variant effect analysis provides insights into drug resistance mechanisms of anaplastic lymphoma kinase mutations
Cited by: 10
Author(s): Jianzong Li, Yue Huang, Miaomiao Wu, Chuanfang Wu, Xin Li, Ji Bao
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-29070-w

Structural Insight into Substrate Specificity of 3-Hydroxypropionyl-Coenzyme A Dehydratase from Metallosphaera sedula
Cited by: 8
Author(s): Dong‐Hoon Lee, Kyungjin Kim
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-29396-5

A systematic dissection of sequence elements determining β-Klotho and FGF interaction and signaling
Cited by: 15
Author(s): Sally Yu Shi, Ya‐Wen Lu, Jason Richardson, Xiaoshan Min, Jennifer Weiszmann, William G. Richards, Zhong Lin Wang, Zhongqi Zhang, Jun Zhang, Yang Li
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-28988-5

Structural and Biochemical Characterization of AaL, a Quorum Quenching Lactonase with Unusual Kinetic Properties
Cited by: 34
Author(s): Céline Bergonzi, Michael Schwab, Tikeswar Naik, David Daudé, Éric Chabrière, Mikael Elias
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-29535-y

Metal-cation regulation of enzyme dynamics is a key factor influencing the activity of S-adenosyl-l-homocysteine hydrolase from Pseudomonas aeruginosa
Cited by: 13
Author(s): Justyna Czyrko, Joanna Śliwiak, Barbara Imiołczyk, Zofia Gdaniec, Mariusz Jaskólski, Krzysztof Brzeziński
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-29439-x

Biochemical and structural characterization of a mannose binding jacalin-related lectin with two-sugar binding sites from pineapple (Ananas comosus) stem
Cited by: 16
Author(s): Mohamed Azarkan, Georges Feller, Julie Vandenameele, R. Herman, Rachida El Mahyaoui, Eric Sauvage, Arnaud Vanden Broeck, André Matagne, Paulette Charlier, Frédéric Kerff
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-30042-3

Structure and nucleic acid binding properties of KOW domains 4 and 6–7 of human transcription elongation factor DSIF
Cited by: 9
Author(s): Philipp K Zuber, Lukas Hahn, Anne Reinl, Kristian Schweimer, Stefan H. Knauer, Maxwell E. Gottesman, Paul Rösch, Birgitta M. Wöhrl
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-30195-1

Effects of polymorphic variation on the thermostability of heterogenous populations of CYP3A4 and CYP2C9 enzymes in solution
Cited by: 7
Author(s): Lauren B. Arendse, Jonathan M. Blackburn
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-30508-4

Identification and characterization of a novel β-D-galactosidase that releases pyruvylated galactose
Cited by: 8
Author(s): Yujiro Higuchi, Hitomi Matsufuji, Masanari Tanuma, T. Arakawa, Kazuki Mori, Chihaya Yamada, Risa Shofia, Eiji Matsunaga, Kosuke Tashiro, Shinya Fushinobu, Kaoru Takegawa
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-30411-y

Evolutionary, structural and expression analysis of core genes involved in starch synthesis
Cited by: 62
Author(s): Jianzhou Qu, Shutu Xu, Zhengquan Zhang, Guangzhou Chen, Yuyue Zhong, Linsan Liu, Renhe Zhang, Jiquan Xue, Dongwei Guo
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-31272-1

Predictions of novel Schistosoma mansoni - human protein interactions consistent with experimental data
Cited by: 8
Author(s): Javona White Bear, Ting Long, Danielle Skinner, James H. McKerrow
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-31080-7

Application of the fragment molecular orbital method to discover novel natural products for prion disease
Cited by: 15
Author(s): Jiwon Choi, Hyo Jin Kim, Xuemei Jin, Hyun Jeong Lim, Songmi Kim, In-Soon Roh, Hyung-Lyun Kang, Kyoung Tai No, Hyun Joo Sohn
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-31370-0

X-ray structure analysis of bacteriorhodopsin at 1.3 Å resolution
Cited by: 45
Author(s): N. Hasegawa, H. Jonotsuka, Kunio Miki, Kazuki Takeda
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-31417-2

A novel glycosylated anti-CD20 monoclonal antibody from transgenic cattle
Cited by: 8
Author(s): Ran Zhang, C. C. H. Tang, Haipeng Guo, Bo Tang, Sheng Hou, Z. H. Lei, Jianwu Wang, Fang Ding, Junxing Zhao, Haiping Wang, Zhongzhou Chen, Yong Dai, Ning Li
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-31394-6

Structural basis for the complete resistance of the human prion protein mutant G127V to prion disease
Cited by: 28
Author(s): Zhen Zheng, Meilan Zhang, Yong‐Heng Wang, Ronghua Ma, Cheng Guo, Liubin Feng, Jihui Wu, Hongwei Yao, Donghai Lin
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-31630-z

Differences in antigenic sites and other functional regions between genotype A and G mumps virus surface proteins
Cited by: 20
Author(s): Sigrid Gouma, Tessa Vermeire, Steven Van Gucht, Lennart Martens, Veronik Hutse, Jeroen Cremer, Paul A. Rota, Geert Leroux‐Roels, Marion Koopmans, Rob van Binnendijk, Elien Vandermarliere
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-31142-w

Structural characterization of a novel KH-domain containing plant chloroplast endonuclease
Cited by: 4
Author(s): Ashok K. Rout, Himanshu Singh, Sunita Patel, Vandana Raghvan, Saurabh Gautam, Renu Minda, Basuthkar J. Rao, Kandala V. R. Chary
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-32080-3

Sharing of human milk oligosaccharides degradants within bifidobacterial communities in faecal cultures supplemented with Bifidobacterium bifidum
Cited by: 106
Author(s): Aina Gotoh, Toshihiko Katoh, Mikiyasu Sakanaka, Yiwei Ling, Chihaya Yamada, Shinichiro Asakuma, Tadasu Urashima, Yusuke Tomabechi, Ayako Katayama-Ikegami, Shin Kurihara, Kenji Yamamoto, Gaku Harata, Fang He, Junko Hirose, Motomitsu Kitaoka, Shujiro Okuda, Takane Katayama
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-32446-7

Crystal structures of multicopper oxidase CueO G304K mutant: structural basis of the increased laccase activity
Cited by: 15
Author(s): Hanqian Wang, Xiaoqing Liu, Jintong Zhao, Qingxia Yue, Yehai Yan, Zengqiang Gao, Yuhui Dong, Zhiyong Zhang, Yanting Fan, Jian Tian, Ningfeng Wu, Yong Gong
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-32481-4

Tetrahydrobiopterin modulates ubiquitin conjugation to UBC13/UBE2N and proteasome activity by S-nitrosation
Cited by: 5
Author(s): Jade Bailey, Simon Davis, Andrew Shaw, Marina Diotallevi, Román Fischer, Matthew A. Benson, Hanneng Zhu, James Brown, Shoumo Bhattacharya, Benedikt M. Kessler, Keith M. Channon, Mark J. Crabtree
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-32536-6

Elucidating a role for the cytoplasmic domain in the Mycobacterium tuberculosis mechanosensitive channel of large conductance
Cited by: 7
Author(s): Nadia Herrera, Grigory Maksaev, Elizabeth S. Haswell, Douglas C Rees
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-32817-0

Human and mouse albumin bind their respective neonatal Fc receptors differently
Cited by: 40
Author(s): Jeannette Nilsen, Malin C. Bern, Kine Marita Knudsen Sand, Algirdas Grevys, Bjørn Dalhus, Inger Sandlie, Jan Terje Andersen
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-33085-8

Two Engineered OBPs with opposite temperature-dependent affinities towards 1-aminoanthracene
Cited by: 7
Author(s): Filipa Gonçalves, Tarsila G. Castro, Nuno G. Azóia, Artur Ribeiro, Carla Silva
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-33289-y

Tuneable poration: host defense peptides as sequence probes for antimicrobial mechanisms
Cited by: 25
Author(s): Marc-Philipp Pfeil, Alice L. B. Pyne, Valeria Losasso, Jascindra Ravi, Baptiste Lamarre, Nilofar Faruqui, Hasan Alkassem, Kenneth R. Hammond, Peter J. Judge, Martyn Winn, Glenn Martyna, Jason Crain, Anthony Watts, Bart W. Hoogenboom, Maxim G. Ryadnov
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-33371-5

2.0 Å resolution crystal structure of human polκ reveals a new catalytic function of N-clasp in DNA replication
Cited by: 7
Author(s): Vikash Kumar Jha, Hong Li
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-33394-y

Engineering a branching sucrase for flavonoid glucoside diversification
Cited by: 14
Author(s): Yannick Malbert, Claire Moulis, Yoann Brison, Sandrine Morel, Isabelle André, Magali Remaud‐Siméon
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-33484-x

Synthetic cADPR analogues may form only one of two possible conformational diastereoisomers
Cited by: 2
Author(s): Joanna M. Watt, Mark Thomas, Barry V. L. Potter
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-33977-9

Off-axis rotor in Enterococcus hirae V-ATPase visualized by Zernike phase plate single-particle cryo-electron microscopy
Cited by: 9
Author(s): Jun Tsunoda, Chihong Song, Fabiana Lica Imai, Junichi Takagi, Hiroshi Ueno, Takeshi Murata, Ryota Iino, Kazuyoshi Murata
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-34090-7

GroEL/ES mediated the in vivo recovery of TRAIL inclusion bodies in Escherichia coli
Cited by: 10
Author(s): Zhanqing Wang, Min Zhang, Xin Lv, Jiying Fan, Jian Zhang, Jing Sun, Yang Shen
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-34259-0

VCE-004.8, A Multitarget Cannabinoquinone, Attenuates Adipogenesis and Prevents Diet-Induced Obesity
Cited by: 17
Author(s): Belén Palomares, Francisco Ruíz-Pino, Carmen Navarrete, Inmaculada Velasco, Miguel A. Sánchez-Garrido, Carla Jiménez‐Jiménez, Carolina Pavicic, María J. Vázquez, Giovanni Appendino, M. Luz Bellido, Marco A. Calzado, Manuel Tena‐Sempere, Eduardo Muñóz
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-34509-1

Systems pharmacology reveals the unique mechanism features of Shenzhu Capsule for treatment of ulcerative colitis in comparison with synthetic drugs
Cited by: 35
Author(s): Wuwen Feng, Hui Ao, Shi‐Jun Yue, Cheng Peng
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-34534-0

Structure of bacterial oligosaccharyltransferase PglB bound to a reactive LLO and an inhibitory peptide
Cited by: 26
Author(s): Maja Napiórkowska, Jérémy Boilevin, Tamis Darbre, Jean‐Louis Reymond, Kaspar P. Locher
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-34941-3

Crystallographic and kinetic analyses of human IPMK reveal disordered domains modulate ATP binding and kinase activity
Cited by: 9
Author(s): Corey D. Seacrist, Raymond D. Blind
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-35153-5

Structural basis for dimerization of the death effector domain of the F122A mutant of Caspase-8
Cited by: 16
Author(s): Chen Shen, Junchen Pei, Xiaomin Guo, Lu Zhou, Qinkai Li, Jing Quan
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-34956-w

Structure and oligomerization of the periplasmic domain of GspL from the type II secretion system of Pseudomonas aeruginosa
Cited by: 11
Author(s): Aleksandra Fulara, Isabel Vandenberghe, Randy J. Read, Bart Devreese, Savvas N. Savvides
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-34887-6

Blocking nuclear export of HSPA8 after heat shock stress severely alters cell survival
Cited by: 18
Author(s): Fengjuan Wang, Srinivasa Reddy Bonam, Nicolas Schall, Lauriane Kuhn, Philippe Hammann, Olivier Chaloin, Jean‐Baptiste Madinier, Jean‐Paul Briand, Nicolas Pagé, Sylviane Muller
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-35509-x

Structure and Function Studies of Asian Corn Borer Ostrinia furnacalis Pheromone Binding Protein2
Cited by: 9
Author(s): Suman Mazumder, Salik Ram Dahal, Bharat Chaudhary, Smita Mohanty
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-35407-2

Enhanced anti-metastatic bioactivity of an IGF-TRAP re-engineered to improve physicochemical properties
Cited by: 12
Author(s): George Vaniotis, Serge Moffett, Traian Sulea, Ni Wang, Seyyed Mehdy Elahi, Étienne Lessard, Jason Baardsnes, Stéphanie Perrino, Yves Durocher, Jan Frystyk, Bernard Massie, Pnina Brodt
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-35783-9

Ternary crystal structure of human RORγ ligand-binding-domain, an inhibitor and corepressor peptide provides a new insight into corepressor interaction
Cited by: 11
Author(s): Masato Noguchi, Akihiro Nomura, Satoki Doi, Keishi Yamaguchi, Keisuke Hirata, Makoto Shiozaki, Kazuyuki Maeda, Shin‐ichi Hirashima, Masayuki Kotoku, Takayuki Yamaguchi, Yoshiaki Katsuda, Paul D. Crowe, Hai‐Yan Tao, Scott M. Thacher, Tsutomu Adachi
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-35547-5

Phylogenetic and mutational analyses of human LEUTX, a homeobox gene implicated in embryogenesis
Cited by: 14
Author(s): Shintaro Katayama, Vipin Ranga, Eeva-Mari Jouhilahti, Tomi T. Airenne, Mark S. Johnson, Krishanu Mukherjee, Thomas R. Bürglin, Juha Kere
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-35703-x

Structural insight into D-xylose utilization by xylose reductase from Scheffersomyces stipitis
Cited by: 4
Author(s): Hyeoncheol Francis Son, Sun Mi Lee, Kyungjin Kim
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-36001-2

Structural Insights into the FtsQ/FtsB/FtsL Complex, a Key Component of the Divisome
Cited by: 27
Author(s): Yuri Choi, Jinwoo Kim, Hye‐Jin Yoon, Kyeong Sik Jin, Sangryeol Ryu, Hyung Ho Lee
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-36788-0

The (R)-enantiomer of the 6-chromanol derivate SUL-121 improves renal graft perfusion via antagonism of the α1-adrenoceptor
Cited by: 13
Author(s): D Nakladal, Hendrik Buikema, Ana Romero, Sebastiaan Lambooy, Jara Bouma, Guido Krenning, Pieter C. Vogelaar, Adrianus Cornelis van der Graaf, Matthew R. Groves, Ján Kyselovič, Robert H. Henning, Leo E. Deelman
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-37276-1

Computational insights into the role of α-strand/sheet in aggregation of α-synuclein
Cited by: 30
Author(s): Anand Balupuri, Kwang-Eun Choi, Nam Sook Kang
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-37490-x

Identification of selective inhibitors of Helicobacter pylori IMPDH as a targeted therapy for the infection
Cited by: 8
Author(s): Kapil Juvale, Gayathri Purushothaman, Vijay Singh, Althaf Shaik, Srimadhavi Ravi, Vijay Thiruvenkatam, Sivapriya Kirubakaran
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-36391-3

Effects of point mutations in the binding pocket of the mouse major urinary protein MUP20 on ligand affinity and specificity
Cited by: 17
Author(s): Jimena Ricatti, Laura Acquasaliente, Giovanni Ribaudo, De Filippis, Marino Bellini, Ramiro E. Llovera, Susi Barollo, Raffaele Pezzani, Giuseppe Zagotto, Krishna Persaud, Carla Mucignat‐Caretta
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-36717-1

The highly GABARAP specific rat monoclonal antibody 8H5 visualizes GABARAP in immunofluorescence imaging at endogenous levels
Cited by: 6
Author(s): Indra M. Simons, Jeannine Mohrlüder, Regina Feederle, Elisabeth Kremmer, Thomas Zobel, Jochen Dobner, Nicole Bleffert, Silke Hoffmann, Dieter Willbold
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-37070-z

Immunoinformatic and systems biology approaches to predict and validate peptide vaccines against Epstein–Barr virus (EBV)
Cited by: 34
Author(s): Arif Ali, Abbas Khan, Aman Chandra Kaushik, Yanjie Wang, Syed Shujait Ali, Muhammad Junaid, Shoaib Saleem, William C.S. Cho, Xueying Mao, Dong‐Qing Wei
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-37306-y

The structure of the nucleoprotein of Influenza D shows that all Orthomyxoviridae nucleoproteins have a similar NPCORE, with or without a NPTAIL for nuclear transport
Cited by: 15
Author(s): Amélie Donchet, Joan Oliva, Alice Labaronne, Laura Tengo, Myriam Miloudi, Francine C A Gérard, Caroline Mas, Guy Schoehn, Rob W.H. Ruigrok, Mariette Ducatez, Thibaut Crépin
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-37367-z

New insights into GluT1 mechanics during glucose transfer
Cited by: 57
Author(s): Tatiana Galochkina, Matthieu Ng Fuk Chong, Lylia Challali, Sonia Abbar, Catherine Etchebest
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-37730-0

SmvA is an important efflux pump for cationic biocides in Klebsiella pneumoniae and other Enterobacteriaceae
Cited by: 26
Author(s): Matthew E. Wand, Shirin Jamshidi, Lucy J. Bock, Khondaker Miraz Rahman, J. Mark Sutton
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-38134-w

Crystal structure of the dog allergen Can f 6 and structure-based implications of its cross-reactivity with the cat allergen Fel d 4
Cited by: 14
Author(s): Kenji Yamamoto, Osamu Ishibashi, Kazuhiko Sugiura, Miki Ubatani, Minoru Sakaguchi, Masatoshi Nakatsuji, Shigeru Shimamoto, Masanori Noda, Susumu Uchiyama, Yuma Fukutomi, Shigenori Nishimura, Takashi Inui
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-38024-1

Cytotoxicity of apo bovine α-lactalbumin complexed with La3+ on cancer cells supported by its high resolution crystal structure
Cited by: 14
Author(s): Deepthi S. Yarramala, Prem Prakash, Dnyanesh S. Ranade, Sejal Doshi, Purushottam Kulkarni, Prasenjit Bhaumik, Chebrolu P. Rao
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-38410-9

NMR Analysis on Molecular Interaction of Lignin with Amino Acid Residues of Carbohydrate-Binding Module from Trichoderma reesei Cel7A
Cited by: 13
Author(s): Yuki Tokunaga, Takashi Nagata, Takashi Suetomi, Satoshi Oshiro, Kengo Kondo, Masato Katahira, Takashi Watanabe
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-38590-y

Macrophage Migration Inhibitory Factor Acts as the Potential Target of a Newly Synthesized Compound, 1-(9′-methyl-3′-carbazole)-3, 4-dihydro-β-carboline
Cited by: 5
Author(s): Pin‐Hao Ko, Ya‐Ching Shen, Kaliyappan Murugan, Chiung-Wei Huang, Govindan Sivakumar, Pinki Pal, Chia‐Ching Liao, Kai-Shin Luo, Eric Y. Chuang, Mong‐Hsun Tsai, Liang‐Chuan Lai
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-38602-x

Crystal structure and substrate interactions of an unusual fungal non-CBM carrying GH26 endo-β-mannanase from Yunnania penicillata
Cited by: 16
Author(s): Pernille von Freiesleben, Olga V. Moroz, E.V. Blagova, Mathias Wiemann, Nikolaj Spodsberg, Jane Wittrup Agger, G.J. Davies, K.S. Wilson, Henrik Stålbrand, Anne S. Meyer, Kristian B. R. M. Krogh
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-38861-8

SDS-induced oligomerization of Lys49-phospholipase A2 from snake venom
Cited by: 14
Author(s): Takashi Matsui, Shizuka Kamata, Kentaro Ishii, Takahiro Maruno, Nouran Ghanem, Susumu Uchiyama, Koichi Kato, Atsuo Suzuki, Naoko Oda-Ueda, Tomoya Ogawa, Yoshikazu Tanaka
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-38747-9

Modular type I polyketide synthase acyl carrier protein domains share a common N-terminally extended fold
Cited by: 9
Author(s): Luisa Moretto, R. Heylen, Natalie Holroyd, Steven J. Vance, R. William Broadhurst
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-38840-z

Discovery of ((1,2,4-oxadiazol-5-yl)pyrrolidin-3-yl)ureidyl derivatives as selective non-steroidal agonists of the G-protein coupled bile acid receptor-1
Cited by: 13
Author(s): Francesco Saverio Di Leva, Carmen Festa, Adriana Carino, Simona De Marino, Silvia Marchianò, Daniele Di Marino, Claudia Finamore, Maria Chiara Monti, Angela Zampella, Stefano Fiorucci, Vittorio Limongelli
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-39157-7

Dengue virus nonstructural 3 protein interacts directly with human glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and reduces its glycolytic activity
Cited by: 25
Author(s): Emiliana M. Silva, Jonas Nascimento Conde, Diego Allonso, G. Ventura, Diego R. Coelho, Pedro Henrique Carneiro, Manuela L. Silva, Marciano Viana Paes, Kíssila Rabelo, Gilberto Weissmüller, Paulo Mascarello Bisch, Ronaldo Mohana‐Borges
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-39781-3

The CDR1 and Other Regions of Immunoglobulin Light Chains are Hot Spots for Amyloid Aggregation
Cited by: 16
Author(s): Robin Axel Ruiz-Zamora, Simon Guillaumé, Youssra K. Al-Hilaly, Zahraa S. Al‐Garawi, Francisco J. Rodríguez-Álvarez, Guadalupe Zavala-Padilla, Julio Isael Pérez‐Carreón, Sandra L. Rodríguez-Ambriz, Guillermo A. Herrera, Baltazar Becerril-Luján, Adrián Ochoa-Leyva, Jorge Meléndez-Zajgla, Louise C. Serpell, Luis del Pozo‐Yauner
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-40617-3

A Novel Lactate Dehydrogenase Inhibitor, 1-(Phenylseleno)-4-(Trifluoromethyl) Benzene, Suppresses Tumor Growth through Apoptotic Cell Death
Cited by: 60
Author(s): Eun-Yeong Kim, Tae‐Wook Chung, Chang Woo Han, So Young Park, Kang Hyun Park, Se Bok Jang, Ki‐Tae Ha
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-40418-8

Structure guided design of an antibacterial peptide that targets UDP-N-acetylglucosamine acyltransferase
Cited by: 24
Author(s): Manchuta Dangkulwanich, Christian R. H. Raetz, Allison H. Williams
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-40573-y

Molecular architecture of the Jumonji C family histone demethylase KDM5B
Cited by: 16
Author(s): Jerzy Dorosz, Line H. Kristensen, Nanda G. Aduri, Osman Mirza, Rikke Lousen, Saskia Bucciarelli, Ved Mehta, Selene Sellés-Baiget, Sara Marie Øie Solbak, Anders Bach, Pablo Mesa, Pablo Alcon Hernandez, Guillermo Montoya, Tam T. T. N. Nguyen, Kasper D. Rand, Thomas Boesen, Michael Gajhede
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-40693-5

Discovery of NV-5138, the first selective Brain mTORC1 activator
Cited by: 36
Author(s): Shomit Sengupta, Emilie Giaime, Sridhar Nimmagadda, Seung Hahm, Jessica J. Howell, David O’Neill, George P. Vlasuk, Eddine Saiah
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-40232-2

Crystal structures of multidrug efflux pump MexB bound with high-molecular-mass compounds
Cited by: 23
Author(s): Keisuke Sakurai, Seiji Yamasaki, Kaori Nakao, Kunihiko Nishino, Akihito Yamaguchi, Ryosuke Nakashima
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-40983-y

Identification of fibrinogen as a natural inhibitor of MMP-2
Cited by: 14
Author(s): Hassan Sarker, Eugenio Hardy, Ayman Haimour, Walter P. Maksymowych, Lorenzo D. Botto, Carlos Fernández-Patrón
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-41005-7

A Peptide-Nanoparticle System with Improved Efficacy against Multidrug Resistant Bacteria
Cited by: 74
Author(s): Indrani Pal, Dipita Bhattacharyya, Rup Kumar Kar, D. Zarena, Anirban Bhunia, Hanudatta S. Atreya
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-40461-5

Exploring designability of electrostatic complementarity at an antigen-antibody interface directed by mutagenesis, biophysical analysis, and molecular dynamics simulations
Cited by: 29
Author(s): Kouhei Yoshida, Daisuke Kuroda, Masato Kiyoshi, Makoto Nakakido, Satoru Nagatoishi, Shinji Soga, Hideaki Shirai, Kouhei Tsumoto
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-41355-2

Glycosaminoglycans influence enzyme activity of MMP2 and MMP2/TIMP3 complex formation - Insights at cellular and molecular level
Cited by: 23
Author(s): Gloria Ruiz-Gómez, Sarah Vogel, Stephanie Möller, M. Teresa Pisabarro, Ute Hempel
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-41564-9

Phenylpyrrole fungicides act on triosephosphate isomerase to induce methylglyoxal stress and alter hybrid histidine kinase activity
Cited by: 33
Author(s): T. Tristan Brandhorst, Iain Kean, Stephanie M. Lawry, Darin L. Wiesner, Bruce S. Klein
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-41930-7

Identification of Allosteric Inhibitors against Active Caspase-6
Cited by: 13
Author(s): Agne Tubeleviciute-Aydin, Alexandre Beautrait, Jeffrey Lynham, Gyanesh Sharma, A. Gorelik, Ludovic J. Deny, Naoto Soya, Gergely L. Lukacs, Bhushan Nagar, Anne Marinier, Andréa C. LeBlanc
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-42155-4

Structural basis of translation inhibition by cadazolid, a novel quinoxolidinone antibiotic
Cited by: 16
Author(s): Alain Scaiola, Marc Leibundgut, Daniel Boehringer, Patrick Caspers, Daniel Bur, Hans H. Locher, Georg Rueedi, Daniel Ritz
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-39491-w

Structural analyses of NudT16–ADP-ribose complexes direct rational design of mutants with improved processing of poly(ADP-ribosyl)ated proteins
Cited by: 14
Author(s): Puchong Thirawatananond, Robert Lyle McPherson, Jasmine K. Malhi, Sara Nathan, Michael J. Lambrecht, Matthew Brichacek, Paul J. Hergenrother, Anthony K.L. Leung, Sandra B. Gabelli
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-42917-0

Semisynthetic aurones inhibit tubulin polymerization at the colchicine-binding site and repress PC-3 tumor xenografts in nude mice and myc-induced T-ALL in zebrafish
Cited by: 13
Author(s): Yanqi Xie, Liliia M. Kril, Ting Yu, Wen Zhang, M. S. Frasinyuk, S. P. Bondarenko, K. M. Kondratyuk, Elizabeth S. Hausman, Zachary M. Martin, Przemysław Wyrębek, Xifu Liu, Agripina G. Deaciuc, Linda P. Dwoskin, Jing Chen, Haining Zhu, Chang‐Guo Zhan, Vitaliy M. Sviripa, Jessica S. Blackburn, David S. Watt, Chunming Liu
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-43646-0

Uncommon mutational profiles of metastatic colorectal cancer detected during routine genotyping using next generation sequencing
Cited by: 5
Author(s): Claire Franczak, Shaun M. Kandathil, Pauline Gilson, Marie Husson, Marie Rouyer, Jessica Demange, Agnès Leroux, Jean‐Louis Merlin, Alexandre Harlé
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-42650-8

Expression of Ice-Binding Proteins in Caenorhabditis elegans Improves the Survival Rate upon Cold Shock and during Freezing
Cited by: 14
Author(s): Masahiro Kawamura, Chiaki Takanashi, Akari Yamauchi, Motomichi Doi, Kazuhiro Mio, Sakae Tsuda, Y. Sasaki
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-44793-0

Molecular epidemiology, pathogenicity, and structural analysis of haemoglobin variants in the Yunnan province population of Southwestern China
Cited by: 4
Author(s): Jie Zhang, Peng Li, Yang Yang, Yuanlong Yan, Xianying Zeng, Dongmei Li, Hong Chen, Jie Su, Baosheng Zhu
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-45704-z

Characterization of metal binding of bifunctional kinase/phosphatase AceK and implication in activity modulation
Cited by: 2
Author(s): Xiaoying Zhang, Qingya Shen, Zhen Lei, Qianyi Wang, Jimin Zheng, Zongchao Jia
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-45641-x

A novel potent autophagy inhibitor ECDD-S27 targets vacuolar ATPase and inhibits cancer cell survival
Cited by: 8
Author(s): Jiraporn Paha, Phongthon Kanjanasirirat, Bamroong Munyoo, Patoomratana Tuchinda, Naravut Suvannang, Chanin Nantasenamat, Kanokthip Boonyarattanakalin, Prasat Kittakoop, Sirawit Srikor, Gunganist Kongklad, Noppawan Rangkasenee, Suradej Hongeng, Pongsak Utaisincharoen, Suparerk Borwornpinyo, Marisa Ponpuak
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-45282-0

Functional Roles of Metabolic Intermediates in Regulating the Human Mitochondrial NAD(P)+-Dependent Malic Enzyme
Cited by: 14
Author(s): Ju-Yi Hsieh, Wan-Ting Shih, Yu‐Hsuan Kuo, Guang‐Yaw Liu, Hui‐Chih Hung
Software Mentions: 1
Published: about 7 years ago

10.1128/mBio.00949-20

Molecular Insight into TdfH-Mediated Zinc Piracy from Human Calprotectin by Neisseria gonorrhoeae
Cited by: 13
Author(s): Michael T. Kammerman, Amit Bera, Runrun Wu, Simone Harrison, Cathy A. Maxwell, Karl Lundquist, Nicholas Noinaj, Walter J. Chazin, Cynthia Nau Cornelissen
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.00460-20

Convergent Evolution of Neutralizing Antibodies to Staphylococcus aureus γ-Hemolysin C That Recognize an Immunodominant Primary Sequence-Dependent B-Cell Epitope
Cited by: 4
Author(s): David Hernández, Kayan Tam, Bo Shopsin, Emily E. Radke, Karen Law, Timothy Cardozo, Victor J. Torres, Gregg J. Silverman
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.01403-20

Conditional DnaB Protein Splicing Is Reversibly Inhibited by Zinc in Mycobacteria
Cited by: 14
Author(s): Daniel F. Woods, Sweta Vangaveti, Ikechukwu Egbanum, Allison M. Sweeney, Zhong Li, Valjean R. Bacot‐Davis, Danielle S. LeSassier, Matthew Stanger, Gabrielle E. Hardison, Hongmin Li, Marlene Belfort, Christopher Lennon
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.00745-20

Structural Basis and Evolution of Glycan Receptor Specificities within the Polyomavirus Family
Cited by: 8
Author(s): L.J. Stroh, N.H. Rustmeier, Bärbel S. Blaum, Josephine Botsch, Philip Rößler, Florian Wedekink, W. Ian Lipkin, Nischay Mishra, Thilo Stehle
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.02351-20

A Key Motif in the Cholesterol-Dependent Cytolysins Reveals a Large Family of Related Proteins
Cited by: 15
Author(s): Jordan C. Evans, Bronte A. Johnstone, Sara L. Lawrence, C.J. Morton, Michelle P. Christie, Michael W. Parker, Rodney K. Tweten
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.01985-20

Targeting Methionine Synthase in a Fungal Pathogen Causes a Metabolic Imbalance That Impacts Cell Energetics, Growth, and Virulence
Cited by: 12
Author(s): Jennifer Scott, Mónica Sueiro-Olivares, B P Thornton, Rebecca A. Owens, Howbeer Muhamadali, Rachael Fortune‐Grant, Darren D Thomson, Riba Thomas, Katherine A. Hollywood, Seán Doyle, Royston Goodacre, Lydia Tabernero, Elaine Bignell, Jorge Amich
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.02431-20

Accurate Diagnosis of COVID-19 by a Novel Immunogenic Secreted SARS-CoV-2 orf8 Protein
Cited by: 57
Author(s): Xiaohui Wang, Joy Yan Lam, Wan Man Wong, Chun Kit Yuen, Jian Cai, Shannon Wing-Ngor Au, Jasper Fuk‐Woo Chan, Kelvin Kai-Wang To, Kin Hang Kok, Kwok Yung Yuen
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.01612-20

A Giant Extracellular Matrix Binding Protein of Staphylococcus epidermidis Binds Surface-Immobilized Fibronectin via a Novel Mechanism
Cited by: 7
Author(s): Henning Büttner, Markus Perbandt, Thomas P. Kohler, Alexey Kikhney, Manuel Wolters, Coralie Martin, Marisol Heise, Jerome Pascal Wilde, Samira Weißelberg, Anna Both, Christian Betzel, Sven Hammerschmidt, Dmitri I. Svergun, Martin Aepfelbacher, Holger Rohde
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.02045-20

Plasmodium falciparum Apicomplexan-Specific Glucosamine-6-Phosphate N -Acetyltransferase Is Key for Amino Sugar Metabolism and Asexual Blood Stage Development
Cited by: 5
Author(s): Jordi Chi, Marta Cova, Matilde de las Rivas, Ana María Medina, Rafael J. Borges, Pablo Leivar, Antoni Planas, Isabel Usón, R. Hurtado‐Guerrero, Luís Izquierdo
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.02312-20

Plasmodium berghei K13 Mutations Mediate In Vivo Artemisinin Resistance That Is Reversed by Proteasome Inhibition
Cited by: 13
Author(s): Nelson V. Simwela, Barbara H. Stokes, Dana Aghabi, Matt Bogyo, David A. Fidock, Andrew P. Waters
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.02288-20

Staphylococcal DNA Repair Is Required for Infection
Cited by: 16
Author(s): Kam Pou Ha, Rebecca S. Clarke, Gyu-Lee Kim, Jane L. Brittan, Jessica E. Rowley, Despoina A. I. Mavridou, Dane Parker, Tom Clarke, Angela H. Nobbs, Andrew M. Edwards
Software Mentions: 1
Published: over 5 years ago

Projects: pypi: PyMOL

Science Score: 90/100

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Papers Mentioning PyMOL 8,266