Ecosyste.ms: Papers

10.1186/s12881-020-01091-1

Severe syndromic ID and skewed X-inactivation in a girl with NAA10 dysfunction and a novel heterozygous de novo NAA10 p.(His16Pro) variant - a case report
Cited by: 12
Author(s): Ingrid Bader, Nina McTiernan, Christine Darbakk, Eugen Boltshauser, Rasmus Ree, Sabine Ebner, Johannes A. Mayr, Thomas Arnesen
Software Mentions: 1
Published: over 4 years ago

10.1186/s12881-019-0803-1

A novel NAA10 p.(R83H) variant with impaired acetyltransferase activity identified in two boys with ID and microcephaly
Cited by: 20
Author(s): Rasmus Ree, Anni Sofie Geithus, Pernille Mathiesen Tørring, Kristina Pilekær Sørensen, Mads Damkjær, Sally Ann Lynch, Thomas Arnesen
Software Mentions: 1
Published: over 5 years ago

10.1186/s12920-021-00884-4

A novel recessive PDZD7 bi-allelic mutation in an Iranian family with non-syndromic hearing loss
Cited by: 5
Author(s): Hossein Fahimi, Samira Behroozi, Sadaf Noavar, Farshid Parvini
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12920-021-01042-6

Deletion of 2 amino acids in IHH in a Japanese family with brachydactyly type A1
Cited by: 1
Author(s): Nozomu Ozaki, Hiroko Okuda, Hatasu Kobayashi, Kouji H. Harada, Sumiko Inoue, Shohab Youssefian, Akio Koizumi
Software Mentions: 1
Published: over 3 years ago

10.1186/1755-8794-8-S4-S3

Prediction of linear B-cell epitopes of hepatitis C virus for vaccine development
Cited by: 8
Author(s): Wen Huang, Ming Ju Tsai, Kai Ti Hsu, Jyun Rong Wang, Yi Hsiung Chen, Shinn-Ying Ho
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2180-11-116

The crystal structure of alanine racemase from Streptococcus pneumoniae, a target for structure-based drug design
Cited by: 22
Author(s): Hyung‐Jun Im, Miriam L. Sharpe, Ulrich Strych, Milya Davlieva, Kurt L. Krause
Software Mentions: 1
Published: over 13 years ago

10.1186/s12866-014-0226-2

A non-pediocin low molecular weight antimicrobial peptide produced by Pediococcus pentosaceus strain IE-3 shows increased activity under reducing environment
Cited by: 23
Author(s): Pradip Kumar Singh, Shalley Sharma, Anita Kumari, Suresh Korpole
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2180-8-74

Sequence diversity in the A domain of Staphylococcus aureusfibronectin-binding protein A
Cited by: 45
Author(s): Tony Loughman, Tara L. Sweeney, Fergus Keane, Giampiero Pietrocola, Pietro Speziale, Timothy J. Foster
Software Mentions: 1
Published: over 16 years ago

10.1186/s12866-017-0959-9

Novel synthetic analogues of avian β-defensin-12: the role of charge, hydrophobicity, and disulfide bridges in biological functions
Cited by: 21
Author(s): Ming Yang, Chunye Zhang, Michael Z. Zhang, Shuping Zhang
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12866-016-0850-0

Crystal structure and DNA binding activity of a PadR family transcription regulator from hypervirulent Clostridium difficile R20291
Cited by: 9
Author(s): Catherine E. Isom, Smita Menon, L.M. Thomas, Ann H. West, George B. Richter‐Addo, Elizabeth A. Karr
Software Mentions: 1
Published: about 8 years ago

10.1186/s12866-020-01805-8

The model cyanobacteria Anabaena sp. PCC 7120 possess an intact but partially degenerated gene cluster encoding gas vesicles
Cited by: 7
Author(s): Kun Cai, Bo-Ying Xu, Yong-Liang Jiang, Ying Wang, Yuxing Chen, Cong‐Zhao Zhou, Qiong Li
Software Mentions: 1
Published: over 4 years ago

10.1186/s12866-021-02172-8

The rumen eukaryotome is a source of novel antimicrobial peptides with therapeutic potential
Cited by: 9
Author(s): Lucy A. Onime, Linda Oyama, Benjamin Thomas, Jurnorain Gani, Peter G. Alexander, Kate Waddams, Alan Cookson, Narcís Fernández-Fuentes, Christopher J. Creevey, Sharon Huws
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2180-13-79

Two RND proteins involved in heavy metal efflux in Caulobacter crescentus belong to separate clusters within proteobacteria
Cited by: 30
Author(s): Estela Y. Valencia, Vânia Santos Braz, Cristiane R. Guzzo, Marilis V. Marques
Software Mentions: 1
Published: over 11 years ago

10.1186/s12866-020-01823-6

Discovery of 20 novel ribosomal leader candidates in bacteria and archaea
Cited by: 9
Author(s): Iris Eckert, Zasha Weinberg
Software Mentions: 1
Published: over 4 years ago

10.1186/s12866-016-0717-4

Corynebacterium pseudotuberculosis may be under anagenesis and biovar Equi forms biovar Ovis: a phylogenic inference from sequence and structural analysis
Cited by: 11
Author(s): Alberto de Oliveira, Teixeira Pammella, Marcela Santiago Pacheco de Azevedo, Syed Babar Jamal, Sandeep Tiwari, Síntia Almeida, Artur M. S. Silva, Debmalya Barh, Elaine Maria Seles Dorneles, Dionei Joaquim Haas, Marcos Bryan Heinemann, Preetam Ghosh, Andrey Pereira Lage, Henrique César Pereira Figueiredo, Rafaela Salgado Ferreira, Vasco Azevedo
Software Mentions: 1
Published: over 8 years ago

10.1186/s12866-018-1179-7

Genetic variability in the sdrD gene in Staphylococcus aureus from healthy nasal carriers
Cited by: 9
Author(s): Clement Ajayi, Espen Åberg, Fatemeh Askarian, Johanna U. Ericson Sollid, Mona Johannessen, Anne Merethe Hanssen
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2180-14-101

L-alanine-induced germination in Bacillus licheniformis -the impact of native gerA sequences
Cited by: 17
Author(s): Elisabeth Henie Madslien, Per Einar Granum, Janet Martha Blatny, Toril Lindbäck
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2180-10-295

Effects of site-directed mutagenesis of mglA on motility and swarming of Myxococcus xanthus
Cited by: 10
Author(s): Sarah A Fremgen, Neal S. Burke, Patricia L. Hartzell
Software Mentions: 1
Published: about 14 years ago

10.1186/s12866-016-0826-0

Bacteriophage tailspike protein based assay to monitor phase variable glucosylations in Salmonella O-antigens
Cited by: 36
Author(s): Andreas Schmidt, Wolfgang Rabsch, N.K. Broeker, Stefanie Barbirz
Software Mentions: 1
Published: about 8 years ago

10.1186/s12866-019-1577-5

Missense mutations in a transmembrane domain of the Komagataeibacter xylinus BcsA lead to changes in cellulose synthesis
Cited by: 10
Author(s): Luis Fernando Salgado, Silvia Blank, Reza Alipour Moghadam Esfahani, Janice L. Strap, Dario Bonetta
Software Mentions: 1
Published: about 5 years ago

10.1186/s12866-016-0853-x

In vivo functional and molecular characterization of the Penicillin-Binding Protein 4 (DacB) of Pseudomonas aeruginosa
Cited by: 13
Author(s): Cristian Gustavo Aguilera Rossi, Paulino Gómez‐Puertas, Juan A. Ayala
Software Mentions: 1
Published: about 8 years ago

10.1186/s12866-020-01912-6

Correlation of drug resistance with single nucleotide variations through genome analysis and experimental validation in a multi-drug resistant clinical isolate of M. tuberculosis
Cited by: 2
Author(s): Kausik Bhattacharyya, Vishal Nemaysh, Monika Joon, Ramendra Pratap, Mandira Varma-Basil, Mridula Bose, Vani Brahmachari
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2199-12-43

Characterization of the χψ subcomplex of Pseudomonas aeruginosa DNA polymerase III
Cited by: 5
Author(s): Sirine El Houry Mignan, Gregor Witte, Natalie Naue, Ute Curth
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2199-8-74

Rod-derived Cone Viability Factor-2 is a novel bifunctional-thioredoxin-like protein with therapeutic potential
Cited by: 60
Author(s): Frédéric Chalmel, Thierry Léveillard, C. Jaillard, Aurélie Lardenois, Naomi Berdugo, Emmanuelle Morel, Patrice Koehl, George N. Lambrou, Arne Holmgren, José‐Alain Sahel, Olivier Poch
Software Mentions: 1
Published: almost 18 years ago

10.1186/s12860-019-0239-7

Binding of Brucella protein, Bp26, to select extracellular matrix molecules
Cited by: 8
Author(s): Yasmin ElTahir, Amna Al-Araimi, R. Nair, Kaija J. Autio, Hongmin Tu, Jack C. Leo, W. Al-Marzooqi, Eugene H. Johnson
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12860-019-0200-9

Ridge regression estimated linear probability model predictions of O-glycosylation in proteins with structural and sequence data
Cited by: 4
Author(s): Rajaram Gana, Sona Vasudevan
Software Mentions: 1
Published: over 5 years ago

10.1186/s12860-019-0219-y

In silico evidence of de novo interactions between ribosomal and Epstein - Barr virus proteins
Cited by: 2
Author(s): Edmund Ui Hang Sim, Shruti Prashant Talwar
Software Mentions: 1
Published: over 5 years ago

10.1186/s12860-019-0217-0

In silico prediction of structural changes in human papillomavirus type 16 (HPV16) E6 oncoprotein and its variants
Cited by: 8
Author(s): Hugo Alberto Rodríguez-Ruiz, Olga Lilia Garibay‐Cerdenares, Berenice Illades‐Aguiar, Sarita Montaño, Xiaowei Jiang, Marco Antonio Leyva‐Vázquez
Software Mentions: 1
Published: over 5 years ago

10.1186/s12860-019-0216-1

Characterization and engineering of a DNA polymerase reveals a single amino-acid substitution in the fingers subdomain to increase strand-displacement activity of A-family prokaryotic DNA polymerases
Cited by: 15
Author(s): Yvonne Piotrowski, Man Kumari Gurung, Atle Noralf Larsen
Software Mentions: 1
Published: over 5 years ago

10.1186/s12860-020-00293-y

Glutantβase: a database for improving the rational design of glucose-tolerant β-glucosidases
Cited by: 6
Author(s): Diego Mariano, Naiara Pantuza, Lucianna Helene Santos, Rafael E. O. Rocha, Leonardo Henrique França de Lima, Lucas Bleicher, Raquel Cardoso de Melo‐Minardi
Software Mentions: 1
Published: over 4 years ago

10.1186/s12860-019-0193-4

High resolution crystal structure of the FAK FERM domain reveals new insights on the Druggability of tyrosine 397 and the Src SH3 binding site
Cited by: 9
Author(s): Timothy Marlowe, Alexey Dementiev, Sheila Figel, Andrew Rivera, Michael T. Flavin, William G. Cance
Software Mentions: 1
Published: over 5 years ago

10.1186/s12891-020-03222-4

A novel p.A191D matrilin-3 variant in a Vietnamese family with multiple epiphyseal dysplasia: a case report
Cited by: 0
Author(s): Thuong Thi Ho, Linh Huyen Tran, Lan Thu Hoang, Phuong Kim Thi Doan, Trang Thi Kieu Nguyen, Trang Hong Nguyen, Hoai Thu Tran, Ha Hoang, Ha Hoang Chu, Anh Lan Thi Luong
Software Mentions: 1
Published: over 4 years ago

10.1186/s12868-018-0448-6

Differential modulation of human GABAC-ρ1 receptor by sulfur-containing compounds structurally related to taurine
Cited by: 4
Author(s): Lenin Ochoa-de la Paz, Martín González-Andrade, Herminia Pasantes‐Morales, Rodrigo Franco, Rubén Zamora-Alvarado, Edgar Zenteno, Hugo Quiróz-Mercado, Roberto Gonzales-Salinas, Rosario Gulías-Cañizo
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2202-9-S2-S9

Structure and regulation of MARK, a kinase involved in abnormal phosphorylation of Tau protein
Cited by: 53
Author(s): Thomas Timm, Alexander Marx, S. Panneerselvam, Eckhard Mandelkow, Eva‐Maria Mandelkow
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2415-14-108

A novel P20R mutation in the alpha-B crystallin gene causes autosomal dominant congenital posterior polar cataracts in a Chinese family
Cited by: 15
Author(s): Xinyi Xia, Qiuyue Wu, Li-mei An, Weiwei Li, Na Li, Tianfu Li, Cui Zhang, Ying‐Xia Cui, Xiaojun Li, Cong Xue
Software Mentions: 1
Published: about 10 years ago

10.1186/2050-6511-15-68

Differences between murine arylamine N-acetyltransferase type 1 and human arylamine N-acetyltransferase type 2 defined by substrate specificity and inhibitor binding
Cited by: 11
Author(s): Nicola Laurieri, Akane Kawamura, Isaac M. Westwood, Amy Varney, Elizabeth Morris, Angela J. Russell, Lesley A. Stanley, Edith Sim
Software Mentions: 1
Published: almost 10 years ago

10.1186/1471-2229-12-5

Analysis of ADP-glucose pyrophosphorylase expression during turion formation induced by abscisic acid in Spirodela polyrhiza (greater duckweed)
Cited by: 42
Author(s): Wenqin Wang, Joachim Messing
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2229-10-156

Structure-function relationships of wheat flavone O-methyltransferase: Homology modeling and site-directed mutagenesis
Cited by: 22
Author(s): Jian‐Min Zhou, Eunjung Lee, Francesca Kanapathy-Sinnaiaha, Younghee Park, Jack A. Kornblatt, Yoongho Lim, Ragai K. Ibrahim
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2229-14-161

The pathogenesis-related protein PR-4b from Theobroma cacao presents RNase activity, Ca2+ and Mg2+ dependent-DNase activity and antifungal action on Moniliophthora perniciosa
Cited by: 33
Author(s): Sara Pereira Menezes, Edson Mário de Andrade Silva, Eline Matos Lima, Aurizângela Oliveira de Sousa, Bruno Silva Andrade, Lívia Santos Lima Lemos, Karina Peres Gramacho, Abelmon da Silva Gesteira, Carlos Priminho Pirovani, Fabienne Micheli
Software Mentions: 1
Published: over 10 years ago

10.1186/s12870-018-1361-y

Molecular diversity and function of jasmintides from Jasminum sambac
Cited by: 7
Author(s): Geeta Kumari, Ka Ho Wong, Aida Serra, Joon Shin, Ho Sup Yoon, Siu Kwan Sze, James P. Tam
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2229-14-37

GIGANTUS1 (GTS1), a member of Transducin/WD40 protein superfamily, controls seed germination, growth and biomass accumulation through ribosome-biogenesis protein interactions in Arabidopsis thaliana
Cited by: 54
Author(s): Emma W. Gachomo, José Carlos Jiménez-López, Lyla Jno Baptiste, Simeon O. Kotchoni
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12870-015-0616-0

In vitro analyses of mitochondrial ATP/phosphate carriers from Arabidopsis thaliana revealed unexpected Ca2+-effects
Cited by: 25
Author(s): André Lorenz, Marcel Lorenz, Ute C. Vothknecht, Sandra Niopek-Witz, H. Ekkehard Neuhaus, Ilka Haferkamp
Software Mentions: 1
Published: about 9 years ago

10.1186/s12870-016-0732-5

Revisiting chromatin binding of the Arabidopsis UV-B photoreceptor UVR8
Cited by: 30
Author(s): Melanie Binkert, Carlos Daniel Crocco, Babatunde Ekundayo, Kelvin Lau, Sarah Raffelberg, Kimberley Tilbrook, Ruohe Yin, Richard Chappuis, Thomas Schalch, Roman Ulm
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12870-017-1042-2

Analysis of the lipid body proteome of the oleaginous alga Lobosphaera incisa
Cited by: 40
Author(s): Heike Siegler, Oliver Valerius, Till Ischebeck, Jennifer Popko, Nicolas J. Tourasse, Olivier Vallon, Inna Khozin‐Goldberg, Gerhard H. Braus, Ivo Feußner
Software Mentions: 1
Published: over 7 years ago

10.1186/s12870-014-0239-x

Positive Darwinian selection is a driving force for the diversification of terpenoid biosynthesis in the genus Oryza
Cited by: 28
Author(s): Hao Chen, Guanglin Li, Tobias G. Köllner, Qidong Jia, Jonathan Gershenzon, Feng Chen
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2229-14-149

Exploring the evolutionary route of the acquisition of betaine aldehyde dehydrogenase activity by plant ALDH10 enzymes: implications for the synthesis of the osmoprotectant glycine betaine
Cited by: 19
Author(s): Rosario A. Muñoz‐Clares, Héctor Riveros‐Rosas, Georgina Garza‐Ramos, Lilian González‐Segura, Carlos Mújica-Jiménez, Adriana Julián‐Sánchez
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12870-017-1007-5

Salicylic acid-related cotton (Gossypium arboreum) ribosomal protein GaRPL18 contributes to resistance to Verticillium dahliae
Cited by: 70
Author(s): Qian Gong, Zhaoen Yang, Xiaoqian Wang, Hamama Islam Butt, Eryong Chen, Shoupu He, Chaojun Zhang, Xueyan Zhang
Software Mentions: 1
Published: over 7 years ago

10.1186/s12870-019-1662-9

The expression of a tubby-like protein from Malus domestica (MdTLP7) enhances abiotic stress tolerance in Arabidopsis
Cited by: 20
Author(s): Jianing Xu, Shanshan Xing, Qinghua Sun, Chun-Yan Zhan, Xin Liu, Shizhong Zhang, Xiaoyun Wang
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2229-10-44

The Puf family of RNA-binding proteins in plants: phylogeny, structural modeling, activity and subcellular localization
Cited by: 76
Author(s): Patrick P.C. Tam, Isabelle Barrette-Ng, Dawn M. Simon, Michael W C Tam, Amanda L Ang, Douglas G. Muench
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2229-11-117

A single amino acid change within the R2 domain of the VvMYB5b transcription factor modulates affinity for protein partners and target promoters selectivity
Cited by: 34
Author(s): Imène Hichri, Laurent G. Deluc, François Barrieu, Jochen Bogs, Ali Ridha Mahjoub, Farid Regad, B. Gallois, T. Granier, Claudine Trossat-Magnin, Éric Gomès, Virginie Lauvergeat
Software Mentions: 1
Published: over 13 years ago

10.1186/s12870-019-1947-z

Evolutionary dynamic analyses on monocot flavonoid 3′-hydroxylase gene family reveal evidence of plant-environment interaction
Cited by: 20
Author(s): Yuping Jia, Bo Li, Yujuan Zhang, Xiaoqi Zhang, Yonghong Xu, Chengdao Li
Software Mentions: 1
Published: over 5 years ago

10.1186/s12870-019-2035-0

Molecular cloning and metabolomic characterization of the 5-enolpyruvylshikimate-3-phosphate synthase gene from Baphicacanthus cusia
Cited by: 3
Author(s): Jian Yu, Yihan Zhang, Shuju Ning, Ye Qi, Hexin Tan, Ruibing Chen, Qitao Bu, Rui Zhang, Pei-Min Gong, Ma Xiang, Lei Zhang, Daozhi Wei
Software Mentions: 1
Published: about 5 years ago

10.1186/1753-6561-7-S7-S6

Highly precise protein-protein interaction prediction based on consensus between template-based and de novo docking methods
Cited by: 28
Author(s): Masahito Ohue, Yasushi Matsuzaki, Takehiro Shimoda, Takashi Ishida, Yutaka Akiyama
Software Mentions: 1
Published: almost 11 years ago

10.1186/1753-6561-8-S2-S3

FixingTIM: interactive exploration of sequence and structural data to identify functional mutations in protein families
Cited by: 3
Author(s): Timothy Luciani, John Wenskovitch, Koonwah Chen, David Ryan Koes, Timothy Travers, G. Elisabeta Marai
Software Mentions: 1
Published: over 10 years ago

10.1186/1753-6561-9-S1-A59

Revealing the impact of 17 mutations of human FMO3 protein associated with trimethylaminuria on its local spatial properties: a bioinformatic approach
Cited by: 0
Author(s): T. V. Borodina, SE Vakal
Software Mentions: 1
Published: almost 10 years ago

10.1186/1756-0500-4-321

Homology modeling of mosquito cytochrome P450 enzymes involved in pyrethroid metabolism: insights into differences in substrate selectivity
Cited by: 29
Author(s): Panida Lertkiatmongkol, Ekachai Jenwitheesuk, Pornpimol Rongnoparut
Software Mentions: 1
Published: about 13 years ago

10.1186/s13104-020-05364-z

In silico analysis of epitope-based CadF vaccine design against Campylobacter jejuni
Cited by: 2
Author(s): Mona Moballegh Naseri, Saeed Shams, Mohammad Moballegh Naseri, Bita Bakhshi
Software Mentions: 1
Published: about 4 years ago

10.1186/1756-0500-7-713

Molecular cloning and in-silico characterization of high temperature stress responsive pAPX gene isolated from heat tolerant Indian wheat cv. Raj 3765
Cited by: 16
Author(s): Jasdeep Chatrath Padaria, Harinder Vishwakarma, Koushik Biswas, Rahul Singh Jasrotia, Gyanendra Pratap Singh
Software Mentions: 1
Published: about 10 years ago

10.1186/s13104-018-3513-4

Investigating the functionality of a ribosome-binding mutant of NAA15 using Saccharomyces cerevisiae
Cited by: 9
Author(s): Sylvia Varland, Thomas Arnesen
Software Mentions: 1
Published: over 6 years ago

10.1186/1756-0500-3-271

SECRET domain of variola virus CrmB protein can be a member of poxviral type II chemokine-binding proteins family
Cited by: 18
Author(s): Денис Антонец, T. S. Nepomnyashchikh, С. Н. Щелкунов
Software Mentions: 1
Published: about 14 years ago

10.1186/1756-0500-2-251

Crystallographic structure of ubiquitin in complex with cadmium ions
Cited by: 6
Author(s): Insaf Ahmed Qureshi, François Ferrón, Cheah Chen Seh, Pierina Cheung, Julien Lescar
Software Mentions: 1
Published: almost 16 years ago

10.1186/s13104-015-1483-3

PyMine: a PyMOL plugin to integrate and visualize data for drug discovery
Cited by: 31
Author(s): Rajan Chaudhari, Zhijun Li
Software Mentions: 1
Published: about 9 years ago

10.1186/s13104-021-05461-7

A virtual alternative to molecular model sets: a beginners’ guide to constructing and visualizing molecules in open-source molecular graphics software
Cited by: 5
Author(s): Siripreeya Phankingthongkum, Taweetham Limpanuparb
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13104-016-2149-5

GP0.4 from bacteriophage T7: in silico characterisation of its structure and interaction with E. coli FtsZ
Cited by: 3
Author(s): Adam J Simpkin, Daniel J. Rigden
Software Mentions: 1
Published: over 8 years ago

10.1186/1756-0500-4-173

Severe forms of partial androgen insensitivity syndrome due to p.L830F novel mutation in androgen receptor gene in a Brazilian family
Cited by: 10
Author(s): Reginaldo José Petroli, Andréa T. Maciel‐Guerra, Fernanda Caroline Soardi, Flávia Leme de Calais, Gil Guerra, Maricilda Palandi de Mello
Software Mentions: 1
Published: over 13 years ago

10.1186/1472-6807-9-44

Amyloidogenic determinants are usually not buried
Cited by: 134
Author(s): Kimon Frousios, Vassiliki A. Iconomidou, Carolina-Maria Karletidi, Stavros J. Hamodrakas
Software Mentions: 1
Published: over 15 years ago

10.1186/1472-6807-13-S1-S2

Modeling protein conformational transitions by a combination of coarse-grained normal mode analysis and robotics-inspired methods
Cited by: 41
Author(s): Ibrahim Al-Bluwi, Marc Vaisset, Thierry Siméon, Juan Cortés
Software Mentions: 1
Published: about 11 years ago

10.1186/1472-6807-12-6

Comparison of tertiary structures of proteins in protein-protein complexes with unbound forms suggests prevalence of allostery in signalling proteins
Cited by: 22
Author(s): Lakshmipuram S. Swapna, Swapnil Mahajan, Alexandre G. de Brevern, Narayanaswamy Srinivasan
Software Mentions: 1
Published: over 12 years ago

10.1186/1472-6807-7-47

Crystal structure of hyperthermophilic esterase EstE1 and the relationship between its dimerization and thermostability properties
Cited by: 71
Author(s): Jung Sue Byun, Jin Kyu Rhee, Nam Doo Kim, Jeong Hyeok Yoon, Dong Uk Kim, Eunhee Koh, Jisun Oh, Hyun Soo Cho
Software Mentions: 1
Published: over 17 years ago

10.1186/1472-6807-11-32

Peptide binding prediction for the human class II MHC allele HLA-DP2: a molecular docking approach
Cited by: 49
Author(s): Atanas Patronov, Иван Димитров, Darren R. Flower, Irini Doytchinova
Software Mentions: 1
Published: over 13 years ago

10.1186/1472-6807-11-41

Hydration sites of unpaired RNA bases: a statistical analysis of the PDB structures
Cited by: 9
Author(s): Svetlana Kirillova, Oliviero Carugo
Software Mentions: 1
Published: almost 14 years ago

10.1186/1472-6807-12-28

Structural and molecular basis of interaction of HCV non-structural protein 5A with human casein kinase 1α and PKR
Cited by: 14
Author(s): G. Sudha, Yamunadevi Subburaj, Nidhi Tyagi, Saumitra Das, Narayanaswamy Srinivasan
Software Mentions: 1
Published: about 12 years ago

10.1186/s12900-014-0021-1

Structure and functional characterization of pyruvate decarboxylase from Gluconacetobacter diazotrophicus
Cited by: 18
Author(s): Leonardo Joaquim van Zyl, Wolf‐Dieter Schubert, Marla Tuffin, Don A. Cowan
Software Mentions: 1
Published: about 10 years ago

10.1186/1472-6807-14-1

Crystal structures of IspF from Plasmodium falciparum and Burkholderia cenocepacia: comparisons inform antimicrobial drug target assessment
Cited by: 19
Author(s): P.E.F. O'Rourke, Justyna Kalinowska‐Tłuścik, Paul K. Fyfe, Alice Dawson, William N. Hunter
Software Mentions: 1
Published: almost 11 years ago

10.1186/1472-6807-8-22

Structural insights on the pamoic acid and the 8 kDa domain of DNA polymerase beta complex: Towards the design of higher-affinity inhibitors
Cited by: 21
Author(s): Corinne Hazan, François Boudsocq, Virginie Gervais, Olivier Saurel, Marion Ciais, Christophe Cazaux, Jerzy Czaplicki, Alain Milon
Software Mentions: 1
Published: over 16 years ago

10.1186/1472-6807-8-49

HOLLOW: Generating Accurate Representations of Channel and Interior Surfaces in Molecular Structures
Cited by: 387
Author(s): Bosco Ho, Franz Gruswitz
Software Mentions: 1
Published: almost 17 years ago

10.1186/s12900-017-0079-7

Leishmania infantum 5’-Methylthioadenosine Phosphorylase presents relevant structural divergence to constitute a potential drug target
Cited by: 2
Author(s): Héla Ben Abid, Emna Harigua‐Souiai, Thouraya Mejri, Mourad Barhoumi
Software Mentions: 1
Published: almost 7 years ago

10.1186/1472-6807-8-6

Crystal structures of a purple acid phosphatase, representing different steps of this enzyme's catalytic cycle
Cited by: 86
Author(s): Gerhard Schenk, Tristan W. Elliott, Eleanor Leung, Lyle E. Carrington, Nataša Mitić, Lawrence R. Gahan, L.W. Guddat
Software Mentions: 1
Published: almost 17 years ago

10.1186/1472-6807-7-82

Characterization of a human coagulation factor Xa-binding site on Viperidae snake venom phospholipases A2 by affinity binding studies and molecular bioinformatics
Cited by: 46
Author(s): Grazyna Faure, Veerabasappa T. Gowda, Rachid C. Maroun
Software Mentions: 1
Published: almost 18 years ago

10.1186/s12900-018-0081-8

A structural preview of aquaporin 8 via homology modeling of seven vertebrate isoforms
Cited by: 6
Author(s): Andreas Kirscht, Yonathan Sonntag, Per Kjellbom, Urban Johanson
Software Mentions: 1
Published: almost 7 years ago

10.1186/1472-6807-13-10

Crystal structure of putative CbiT from Methanocaldococcus jannaschii: an intermediate enzyme activity in cobalamin (vitamin B12) biosynthesis
Cited by: 0
Author(s): Balasundaram Padmanabhan, Shigeyuki Yokoyama, Yoshitaka Bessho
Software Mentions: 1
Published: almost 12 years ago

10.1186/1472-6807-11-21

Crystal structures of Burkholderia cenocepacia dihydropteroate synthase in the apo-form and complexed with the product 7,8-dihydropteroate
Cited by: 19
Author(s): Rachel Morgan, Gaëlle Batot, J.M. Dement, V.A. Rao, T.C. Eadsforth, William N. Hunter
Software Mentions: 1
Published: over 13 years ago

10.1186/1472-6807-9-17

Solution structure of the parvulin-type PPIase domain of Staphylococcus aureus PrsA – Implications for the catalytic mechanism of parvulins
Cited by: 41
Author(s): Outi Heikkinen, Raili Seppälä, Helena Tossavainen, Sami Heikkinen, Harri Koskela, Perttu Permi, Ilkka Kilpeläinen
Software Mentions: 1
Published: over 15 years ago

10.1186/s12900-015-0042-4

Structural characterization of the carbohydrate-binding module of NanA sialidase, a pneumococcal virulence factor
Cited by: 24
Author(s): Lei Yang, Helen Connaris, Jonathan Potter, G.L. Taylor
Software Mentions: 1
Published: over 9 years ago

10.1186/1472-6807-13-26

Type I pyridoxal 5′-phosphate dependent enzymatic domains embedded within multimodular nonribosomal peptide synthetase and polyketide synthase assembly lines
Cited by: 17
Author(s): Teresa Milano, Alessandro Paiardini, Ingeborg Grgurina, Stefano Pascarella
Software Mentions: 1
Published: about 11 years ago

10.1186/1472-6807-14-10

Structural insights into Noonan/LEOPARD syndrome-related mutants of protein-tyrosine phosphatase SHP2 (PTPN11)
Cited by: 53
Author(s): Wei Qiu, Xiaonan Wang, В. Романов, A. Hutchinson, Andrés Lin, Maxim Ruzanov, Kevin P. Battaile, E.F. Pai, Benjamin G. Neel, Nickolay Y. Chirgadze
Software Mentions: 1
Published: over 10 years ago

10.1186/1472-6807-7-8

Structure and characterization of a novel chicken biotin-binding protein A (BBP-A)
Cited by: 18
Author(s): Vesa P. Hytönen, Juha Määttä, Einari A. Niskanen, Juhani Huuskonen, Kaisa Helttunen, Katrin Halling, Henri R. Nordlund, Kari Rissanen, Mark S. Johnson, Tiina A. Salminen, Markku S. Kulomaa, Olli H. Laitinen, Tomi T. Airenne
Software Mentions: 1
Published: over 17 years ago

10.1186/1472-6807-7-57

Solution structure of the second bromodomain of Brd2 and its specific interaction with acetylated histone tails
Cited by: 50
Author(s): Hongda Huang, Jiahai Zhang, Wei Shen, Xinsheng Wang, Jiawen Wu, Jihui Wu, Yunyu Shi
Software Mentions: 1
Published: about 17 years ago

10.1186/1472-6807-13-13

Crystal structure of signal regulatory protein gamma (SIRPγ) in complex with an antibody Fab fragment
Cited by: 10
Author(s): Joanne E. Nettleship, Jingshan Ren, David J. Scott, Nahid Rahman, Deborah Hatherley, Yuguang Zhao, David I. Stuart, A. Neil Barclay, Raymond J. Owens
Software Mentions: 1
Published: over 11 years ago

10.1186/1472-6807-12-15

Structural insight into the substrate- and dioxygen-binding manner in the catalytic cycle of rieske nonheme iron oxygenase system, carbazole 1,9a-dioxygenase
Cited by: 40
Author(s): Yuji Ashikawa, Zui Fujimoto, Yusuke Usami, Kengo Inoue, Hiroshi Noguchi, Hisakazu Yamane, Hideaki Nojiri
Software Mentions: 1
Published: over 12 years ago

10.1186/s12900-015-0046-0

Three-dimensional structure model and predicted ATP interaction rewiring of a deviant RNA ligase 2
Cited by: 3
Author(s): Sandrine Moreira, Emmanuel Noutahi, Guillaume Lamoureux, Gertraud Burger
Software Mentions: 1
Published: about 9 years ago

10.1186/1472-6807-9-37

Analysis of proteins with the 'hot dog' fold: Prediction of function and identification of catalytic residues of hypothetical proteins
Cited by: 47
Author(s): Lakshmi Swarnamukhi Pidugu, Koustav Maity, Karthikeyan Ramaswamy, Namita Surolia, K. Suguna
Software Mentions: 1
Published: over 15 years ago

10.1186/1472-6807-7-68

The structure of Mycobacteria 2C-methyl-D-erythritol-2,4-cyclodiphosphate synthase, an essential enzyme, provides a platform for drug discovery
Cited by: 39
Author(s): Lori Buetow, Alexander Brown, Tanya Parish, William N. Hunter
Software Mentions: 1
Published: about 17 years ago

10.1186/1472-6807-12-24

Structural and mechanistic investigations on Salmonella typhimurium acetate kinase (AckA): identification of a putative ligand binding pocket at the dimeric interface
Cited by: 30
Author(s): Sagar Chittori, H.S. Savithri, M.R.N. Murthy
Software Mentions: 1
Published: about 12 years ago

10.1186/1472-6807-7-30

The crystal structure of Escherichia coli TdcF, a member of the highly conserved YjgF/YER057c/UK114 family
Cited by: 47
Author(s): Julia D. Burman, Clare E. M. Stevenson, R. Gary Sawers, David M. Lawson
Software Mentions: 1
Published: over 17 years ago

10.1186/1472-6807-11-44

Hydration studies on the archaeal protein Sso7d using NMR measurements and MD simulations
Cited by: 10
Author(s): Andrea Bernini, Ottavia Spiga, Roberto Consonni, I. Arosio, Paola Fusi, Simone Cirri, Annamaria Guagliardi, Neri Niccolai
Software Mentions: 1
Published: about 13 years ago

10.1186/1472-6807-10-43

The maize ALDH protein superfamily: linking structural features to functional specificities
Cited by: 55
Author(s): José Carlos Jiménez-López, Emma W. Gachomo, Manfredo J. Seufferheld, Simeon O. Kotchoni
Software Mentions: 1
Published: almost 14 years ago

10.1186/1472-6807-11-27

Crystal structure of alkyl hydroperoxidase D like protein PA0269 from Pseudomonas aeruginosa: Homology of the AhpD-like structural family
Cited by: 19
Author(s): Teresa E. Clarke, В. Романов, Yu. N. Chirgadze, Chananat Klomsiri, G. Kisselman, J. Wu-Brown, Leslie B. Poole, E.F. Pai, Nickolay Y. Chirgadze
Software Mentions: 1
Published: over 13 years ago

10.1186/1472-6807-11-19

Exploiting the high-resolution crystal structure of Staphylococcus aureus MenH to gain insight into enzyme activity
Cited by: 13
Author(s): Alice Dawson, Paul K. Fyfe, F. Gillet, William N. Hunter
Software Mentions: 1
Published: over 13 years ago

10.1186/1472-6807-9-57

Low-resolution structural studies of human Stanniocalcin-1
Cited by: 22
Author(s): Daniel Maragno Trindade, Júlio C. Silva, Margareth S Navarro, Iris Concepcion Linares de Torriani, Jörg Kobarg
Software Mentions: 1
Published: about 15 years ago