pypi: PyMOL | Projects | Ecosyste.ms: Papers

10.1039/d0cb00056f

Haemoglobin(βK120C)–albumin trimer as an artificial O<sub>2</sub>carrier with sufficient haemoglobin allostery
Cited by: 6
Author(s): Yoshitsugu Morita, Asuka Saito, Jun Yamaguchi, Teruyuki Komatsu
Software Mentions: 1
Published: over 6 years ago

10.1098/rsos.140120

Structures of pyruvate kinases display evolutionarily divergent allosteric strategies
Cited by: 20
Author(s): Hugh P. Morgan, Weiguo Zhong, I.W. McNae, Paul A.M. Michels, Linda A. Fothergill‐Gilmore, Malcolm D. Walkinshaw
Software Mentions: 1
Published: almost 12 years ago

10.1098/rsos.160112

Orientation of tyrosine side chain in neurotoxic Aβ differs in two different secondary structures of the peptide
Cited by: 7
Author(s): Swagata Das, Supriya Das, Anupam Roy, Samir Kumar Pal, Nakul C. Maiti
Software Mentions: 1
Published: almost 10 years ago

10.1098/rsos.171059

Mechanistic insights into molecular evolution of species-specific differential glycosaminoglycan binding surfaces in growth-related oncogene chemokines
Cited by: 12
Author(s): Khushboo Gulati, Minal Jamsandekar, Krishna Mohan Poluri
Software Mentions: 1
Published: almost 9 years ago

10.1098/rsos.201652

Screening of anti- <i>Acinetobacter baumannii</i> phytochemicals, based on the potential inhibitory effect on OmpA and OmpW functions
Cited by: 8
Author(s): Shahab Shahryari, Parvin Mohammadnejad, Kambiz Akbari Noghabi
Software Mentions: 1
Published: almost 5 years ago

10.1515/raon-2015-0035

Gamma-enolase: a well-known tumour marker, with a less-known role in cancer
Cited by: 64
Author(s): Tjaša Vižin, Janko Kos
Software Mentions: 1
Published: almost 11 years ago

10.1016/j.redox.2018.08.007

Cholesterol secosterol aldehyde adduction and aggregation of Cu,Zn-superoxide dismutase: Potential implications in ALS
Cited by: 19
Author(s): Lucas S. Dantas, Adriano B. Chaves‐Filho, Fernando Rodrigues Coelho, Thiago C. Genaro-Mattos, Keri A. Tallman, Ned A. Porter, Ohára Augusto, Sayuri Miyamoto
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.redox.2018.101079

Mitochondrial Sco proteins are involved in oxidative stress defense
Cited by: 20
Author(s): Aslihan Ekim Kocabey, Luise Kost, Maria Gehlhar, Gerhard Rödel, Uta Gey
Software Mentions: 1
Published: over 7 years ago

10.1016/j.redox.2019.101179

Using resonance synchronous spectroscopy to characterize the reactivity and electrophilicity of biologically relevant sulfane sulfur
Cited by: 26
Author(s): Huanjie Li, Huaiwei Liu, Zhigang Chen, Rui Zhao, Qingda Wang, Mingxue Ran, Yongzhen Xia, Xin Hu, Jihua Liu, Ming Xian, Luying Xun
Software Mentions: 1
Published: about 7 years ago

10.1016/j.redox.2019.101213

Redox properties and human serum albumin binding of nitro-oleic acid
Cited by: 14
Author(s): Martina Zatloukalová, Miloš Mojović, Aleksandra Pavićević, Martin Kabeláč, Bruce Α. Freeman, Michaela Pekarová, Jan Vacek
Software Mentions: 1
Published: about 7 years ago

10.1038/srep38710

NMR studies on the interactions between yeast Vta1 and Did2 during the multivesicular bodies sorting pathway
Cited by: 2
Author(s): Jie Shen, Zhuo Yang, Jiaolong Wang, Bin Zhao, Wenxian Lan, Handong Wang, Xu Zhang, Cody J. Wild, Maili Liu, Zhaohui Xu, Chunyang Cao
Software Mentions: 1
Published: over 9 years ago

10.1038/srep38413

Probing the role of cation-π interaction in the thermotolerance and catalytic performance of endo-polygalacturonases
Cited by: 10
Author(s): Tao Tu, Yeqing Li, Xiaoyun Su, Kun Meng, Rui Ma, Yuan Wang, Bin Yao, Zhemin Lin, Huiying Luo
Software Mentions: 1
Published: over 9 years ago

10.1038/srep38031

Functional and structural characterization of a novel putative cysteine protease cell wall-modifying multi-domain enzyme selected from a microbial metagenome
Cited by: 10
Author(s): Muhammad Faheem, Diogo Martins-de-Sa, Julia Freitas Daltro Vidal, Alice Cunha Morales Álvares, J. Brandão-Neto, Louise E. Bird, Mark D. Tully, Frank von Delft, Betulia M. Souto, Betânia Ferraz Quirino, Sônia Maria de Freitas, J.A.R.G. Barbosa
Software Mentions: 1
Published: over 9 years ago

10.1038/srep38121

Chickpea transcription factor CaTLP1 interacts with protein kinases, modulates ROS accumulation and promotes ABA-mediated stomatal closure
Cited by: 12
Author(s): Vijay Wardhan, Ashish Pandey, Subhra Chakraborty, Niranjan Chakraborty
Software Mentions: 1
Published: over 9 years ago

10.1038/srep39010

The Identification and Characterization of Two Novel Epitopes on the Nucleocapsid Protein of the Porcine Epidemic Diarrhea Virus
Cited by: 28
Author(s): Kang Wang, Chun Xie, Jianan Zhang, Wenchao Zhang, Dong Yang, Lingxue Yu, Yifeng Jiang, Yang Shen, Fei Gao, Yang Zhou, Yue Zhou, Guangzhi Tong
Software Mentions: 1
Published: over 9 years ago

10.1038/srep35915

The Crystal Structure of Monovalent Streptavidin
Cited by: 11
Author(s): Min Zhang, Sanjib Biswas, Wenbin Deng, Hongjun Yu
Software Mentions: 1
Published: over 9 years ago

10.1038/srep40165

The mechanism of catalysis by type-II NADH:quinone oxidoreductases
Cited by: 44
Author(s): James N. Blaza, Hannah R. Bridges, D. Aragão, Elyse Dunn, Adam Heikal, Gregory M. Cook, Yoshio Nakatani, Judy Hirst
Software Mentions: 1
Published: over 9 years ago

10.1038/srep40292

X-ray Structure and Enzymatic Activity Profile of a Core Papain-like Protease of MERS Coronavirus with utility for structure-based drug design
Cited by: 34
Author(s): Jozlyn R. Clasman, Yahira M. Báez-Santos, Robert C. Mettelman, Amornrat O’Brien, Susan C. Baker, Andrew D. Mesecar
Software Mentions: 1
Published: over 9 years ago

10.1038/srep40675

Single PA mutation as a high yield determinant of avian influenza vaccines
Cited by: 7
Author(s): Ilseob Lee, Sang Hyun Kim, Sehee Park, Jin‐Young Bae, Kyoung Shin Yoo, Soo Hyeon Yun, Joo Yeon Lee, Kisoon Kim, Chun Kang, Man Seong Park
Software Mentions: 1
Published: over 9 years ago

10.1038/srep40801

The Matrix protein M1 from influenza C virus induces tubular membrane invaginations in an in vitro cell membrane model
Cited by: 20
Author(s): David Saletti, Jens Radzimanowski, Grégory Effantin, Daniel Midtvedt, Stéphanie Mangenot, Winfríed Weissenhorn, Patricia Bassereau, Marta Bally
Software Mentions: 1
Published: over 9 years ago

10.1038/srep41329

Computational predictors fail to identify amino acid substitution effects at rheostat positions
Cited by: 42
Author(s): Max J. Miller, Yana Bromberg, Liskin Swint‐Kruse
Software Mentions: 1
Published: over 9 years ago

10.1038/srep41783

Polymorphism of apyrimidinic DNA structures in the nucleosome
Cited by: 9
Author(s): Akihisa Osakabe, Yasuhiro Arimura, Sakuya Matsumoto, Naoki Horikoshi, Kaoru Sugasawa, Hitoshi Kurumizaka
Software Mentions: 1
Published: over 9 years ago

10.1038/srep41002

Development of a human vasopressin V1a-receptor antagonist from an evolutionary-related insect neuropeptide
Cited by: 34
Author(s): Maria Giulia Di Giglio, Markus Muttenthaler, Kasper Harpsøe, Zita Liutkevičiūtė, Peter Keov, Thomas Eder, Thomas Rattei, Sarah Arrowsmith, Susan Wray, Aleš Marek, Tomáš Elbert, Paul F. Alewood, David E. Gloriam, Christian W. Gruber
Software Mentions: 1
Published: over 9 years ago

10.1038/srep41811

New Insights on Signal Propagation by Sensory Rhodopsin II/Transducer Complex
Cited by: 23
Author(s): Andrii Ishchenko, Ekaterina Round, Valentin Borshchevskiy, Sergei Grudinin, Ivan Gushchin, Johann P. Klare, Alina Remeeva, Vitaly Polovinkin, P. Utrobin, Taras Balandin, Martin Engelhard, Georg Büldt, Valentin Gordeliy
Software Mentions: 1
Published: over 9 years ago

10.1038/srep41996

Structural insights into human angiogenin variants implicated in Parkinson’s disease and Amyotrophic Lateral Sclerosis
Cited by: 33
Author(s): W.J. Bradshaw, Saima Rehman, Thuy Thi Thu Pham, N. Thiyagarajan, Rebecca L. Lee, Vasanta Subramanian, K. Ravi Acharya
Software Mentions: 1
Published: over 9 years ago

10.1038/srep41751

Quantification of Detergents Complexed with Membrane Proteins
Cited by: 58
Author(s): Vincent Chaptal, Frédéric Delolme, Arnaud Kilburg, Sandrine Magnard, Cédric Montigny, Martin Picard, Charlène Prier, Luca Monticelli, Olivier Bornert, Morgane Agez, Stéphanie Ravaud, Cédric Orelle, Renaud Wagner, Anass Jawhari, Isabelle Broutin, Eva Pebay‐Peyroula, Jean‐Michel Jault, H. Ronald Kaback, Marc le Maire, Pierre Falson
Software Mentions: 1
Published: over 9 years ago

10.1038/srep41772

Involvement of β-defensin 130 (DEFB130) in the macrophage microbicidal mechanisms for killing Plasmodium falciparum
Cited by: 9
Author(s): Mohamad Alaa Terkawi, Ryo Takano, Akinori Furukawa, Fumi Murakoshi, Kentaro Kato
Software Mentions: 1
Published: over 9 years ago

10.1038/srep42494

Arabidopsis thaliana dehydroascorbate reductase 2: Conformational flexibility during catalysis
Cited by: 11
Author(s): Nandita Bodra, Diana Young, Leonardo Astolfi Rosado, Anna Palló, Khadija Wahni, Frank De Proft, Jingjing Huang, Frank Van Breusegem, Joris Messens
Software Mentions: 1
Published: over 9 years ago

10.1038/srep42671

Mechanistic insight into the substrate specificity of 1,2-β-oligoglucan phosphorylase from Lachnoclostridium phytofermentans
Cited by: 20
Author(s): Masahiro Nakajima, Norihiro Tanaka, Naomichi Furukawa, Takanori Nihira, Y. Kodutsumi, Yuta Takahashi, Norihiko Sugimoto, Akimasa Miyanaga, Shinya Fushinobu, Hayao Taguchi, Hiroyuki Nakai
Software Mentions: 1
Published: over 9 years ago

10.1038/srep43043

Membrane targeting of TIRAP is negatively regulated by phosphorylation in its phosphoinositide-binding motif
Cited by: 14
Author(s): Xiaolin Zhao, Wen Xiong, S. Y. Xiao, Tuo-Xian Tang, Jeffrey F. Ellena, Geoffrey S. Armstrong, Carla V. Finkielstein, Daniel G. S. Capelluto
Software Mentions: 1
Published: over 9 years ago

10.1038/srep43290

Hyodeoxycholic acid derivatives as liver X receptor α and G-protein-coupled bile acid receptor agonists
Cited by: 27
Author(s): Simona De Marino, Adriana Carino, Dario Masullo, Claudia Finamore, Silvia Marchianò, Sabrina Cipriani, Francesco Saverio Di Leva, Bruno Catalanotti, Ettore Novellino, Vittorio Limongelli, Stefano Fiorucci, Angela Zampella
Software Mentions: 1
Published: over 9 years ago

10.1038/srep43398

Discovery and Optimization of Novel 5-Indolyl-7-arylimidazo[1,2-a]pyridine-8-carbonitrile Derivatives as Potent Antitubulin Agents Targeting Colchicine-binding Site
Cited by: 12
Author(s): Xin Zhai, Xiaoqiang Wang, Jiao Wang, Jin Liu, Daiying Zuo, Nan Jiang, Tianfang Zeng, Xiuxiu Yang, Tongfei Jing, Ping Gong
Software Mentions: 1
Published: over 9 years ago

10.1038/srep43906

Molecular basis for the role of oncogenic histone mutations in modulating H3K36 methylation
Cited by: 54
Author(s): Yinglu Zhang, Chun-Min Shan, Jiyong Wang, Kehan Bao, Liang Tong, Songtao Jia
Software Mentions: 1
Published: over 9 years ago

10.1038/srep43935

Inhibition of PHD3 by salidroside promotes neovascularization through cell–cell communications mediated by muscle-secreted angiogenic factors
Cited by: 31
Author(s): Jing Zhang, Vivi Kasim, Yudan Xie, Can Huang, Julita Sisjayawan, Agnes Dwi Ariyanti, Xue-Song Yan, Xiaoyan Wu, Caiping Liu, Li Yang, Makoto Miyagishi, Shourong Wu
Software Mentions: 1
Published: over 9 years ago

10.1038/srep44029

The Adhesion of Lactobacillus salivarius REN to a Human Intestinal Epithelial Cell Line Requires S-layer Proteins
Cited by: 24
Author(s): Ran Wang, Libin Jiang, Ming Zhang, Liang Zhao, Yanling Hao, Huiyuan Guo, Yue Sang, Hao Zhang, Fazheng Ren
Software Mentions: 1
Published: over 9 years ago

10.1038/srep44278

Killing of Staphylococcus aureus and Salmonella enteritidis and neutralization of lipopolysaccharide by 17-residue bovine lactoferricins: improved activity of Trp/Ala-containing molecules
Cited by: 18
Author(s): Ya Hao, Na Yang, Xiumin Wang, Da Teng, Ruoyu Mao, Xiao Wang, Zhanzhan Li, Jianhua Wang
Software Mentions: 1
Published: over 9 years ago

10.1038/srep44751

A conserved inter-domain communication mechanism regulates the ATPase activity of the AAA-protein Drg1
Cited by: 4
Author(s): Michael Prattes, Mathias Loibl, Gertrude Zisser, Daniel Luschnig, Lisa Kappel, Ingrid Rössler, Manuela Grassegger, Altijana Hromic, Elmar Krieger, Karl Gruber, Brigitte Pertschy, Helmut Bergler
Software Mentions: 1
Published: over 9 years ago

10.1038/srep44779

Identification of cancer-associated missense mutations in hace1 that impair cell growth control and Rac1 ubiquitylation
Cited by: 20
Author(s): Emilie Andrio, Romain Lotte, Daniel Hamaoui, Jacqueline Cherfils, Anne Doye, Mads Daugaard, Poul H. Sorensen, Fréd́eric Bost, Raymond Ruimy, Amel Mettouchi, Emmanuel Lemichez
Software Mentions: 1
Published: over 9 years ago

10.1038/srep45020

Rassf Proteins as Modulators of Mst1 Kinase Activity
Cited by: 22
Author(s): A. Bitra, Srinivas Sistla, Jessy Mariam, Harshada Malvi, Ruchi Anand
Software Mentions: 1
Published: over 9 years ago

10.1038/srep45089

Isolation and characterization of the E. coli membrane protein production strain Mutant56(DE3)
Cited by: 36
Author(s): Thomas Baumgarten, Susan Schlegel, Samuel Wagner, Mirjam Löw, Jonas Eriksson, Ida Bonde, Markus J. Herrgård, Hermann J. Heipieper, Morten H. H. Nørholm, Dirk Jan Slotboom, Jan‐Willem de Gier
Software Mentions: 1
Published: over 9 years ago

10.1038/srep44709

Cavity filling mutations at the thyroxine-binding site dramatically increase transthyretin stability and prevent its aggregation
Cited by: 14
Author(s): Ricardo Sant’Anna, Maria Rosário Almeida, Nathalia Varejão, Pablo Gallego, Sebastián Esperante, Priscila S. Ferreira, Alda Pereira-Henriques, Fernando L. Palhano, Mamede de Carvalho, Débora Foguel, David Reverter, Maria João Saraiva, Salvador Ventura
Software Mentions: 1
Published: over 9 years ago

10.1038/srep45540

NMDA receptor antagonism with novel indolyl, 2-(1,1-Dimethyl-1,3-dihydro-benzo[e]indol-2-ylidene)-malonaldehyde, reduces seizures duration in a rat model of epilepsy
Cited by: 16
Author(s): Hussin A. Rothan, Elham Amini, Fadihl L. Faraj, Mojtaba Golpich, Teow Chong Teoh, Khadijeh Gholami, Rohana Yusof
Software Mentions: 1
Published: over 9 years ago

10.1038/srep45627

Novel conjugates of aminoadamantanes with carbazole derivatives as potential multitarget agents for AD treatment
Cited by: 52
Author(s): С. О. Бачурин, E. F. Shevtsova, Галина Ф. Махаева, V. V. Grigoriev, Natalia P. Boltneva, N. V. Kovaleva, Sofya V. Lushchekina, P. N. Shevtsov, Margarita E. Neganova, Olga Redkozubova, Elena Bovina, A. V. Gabrel’yan, Владимир Петрович Фисенко, В. Б. Соколов, А. Yu. Aksinenko, Valentina Echeverrı́a, George E. Barreto, Gjumrakch Aliev
Software Mentions: 1
Published: over 9 years ago

10.1038/srep45643

Carbon nanotube filled with magnetic iron oxide and modified with polyamidoamine dendrimers for immobilizing lipase toward application in biodiesel production
Cited by: 55
Author(s): Yanli Fan, Feng Su, Kai Li, Changbin Ke, Yunjun Yan
Software Mentions: 1
Published: over 9 years ago

10.1038/srep45701

Discovery of the first dual GSK3β inhibitor/Nrf2 inducer. A new multitarget therapeutic strategy for Alzheimer’s disease
Cited by: 53
Author(s): Isabel Gameiro, Patrycja Michalska, Giammarco Tenti, Ángel Cores, Izaskun Buendía, Ana I. Rojo, Nikolaos Georgakopoulos, Jesús M. Hernández‐Guijo, M. Teresa Ramos, G Margaret Wells, Manuela G. López, Antonio Cuadrado, J. Carlos Menéndez, Rafael León
Software Mentions: 1
Published: over 9 years ago

10.1038/srep46005

Structural insights into the production of 3-hydroxypropionic acid by aldehyde dehydrogenase from Azospirillum brasilense
Cited by: 15
Author(s): Hyeoncheol Francis Son, Sunghoon Park, Tae Hyeon Yoo, Gyoo Yeol Jung, Kyungjin Kim
Software Mentions: 1
Published: about 9 years ago

10.1038/srep46045

Allosteric inhibition of aminopeptidase N functions related to tumor growth and virus infection
Cited by: 23
Author(s): César Santiago, Gaurav Mudgal, Juan Reguera, Rosario Recacha, Sébastien Albrecht, Luis Enjuanes, José M. Casasnovas
Software Mentions: 1
Published: about 9 years ago

10.1038/srep46282

The structure of Lactococcus lactis thioredoxin reductase reveals molecular features of photo-oxidative damage
Cited by: 9
Author(s): Nicklas Skjoldager, M.B. Bang, Martin Rykær, Olof Björnberg, Michael J. Davies, Birte Svensson, Pernille Harris, Per Hägglund
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-00188-7

Tryptophan end-tagging for promoted lipopolysaccharide interactions and anti-inflammatory effects
Cited by: 12
Author(s): Shalini Singh, Aritreyee Datta, Artur Schmidtchen, Anirban Bhunia, Martin Malmsten
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-00767-8

Structural Insight into the Specific DNA Template Binding to DnaG primase in Bacteria
Cited by: 11
Author(s): Yingqin Zhou, Haiyun Luo, Zhongchuan Liu, Mu Yang, Xiaoyun Pang, Fei Sun, Ganggang Wang
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-00764-x

Modelling the three-dimensional structure of the right-terminal domain of pospiviroids
Cited by: 8
Author(s): Gerhard Steger
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-00954-7

Interplay of buried histidine protonation and protein stability in prion misfolding
Cited by: 15
Author(s): Anatoly Malevanets, P. Andrew Chong, D. Flemming Hansen, Paul Rizk, Yulong Sun, Hong Lin, Ranjith Muhandiram, Avijit Chakrabartty, Lewis E. Kay, Julie D. Forman-Kay, Shoshana J. Wodak
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-01049-z

The GPR139 reference agonists 1a and 7c, and tryptophan and phenylalanine share a common binding site
Cited by: 21
Author(s): Anne Cathrine Nøhr, Willem Jespers, Mohamed A. Shehata, Leonard Floryan, Vignir Ísberg, Knud Erik Andersen, Johan Åqvist, Hugo Gutiérrez‐de‐Terán, Hans Bräuner‐Osborne, David E. Gloriam
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-01087-7

Long lasting neutralization of C5 by SKY59, a novel recycling antibody, is a potential therapy for complement-mediated diseases
Cited by: 69
Author(s): Taku Fukuzawa, Zenjiro Sampei, Kenta Haraya, Yoshinao Ruike, Meiri Shida-Kawazoe, Yuichiro Shimizu, Siok Wan Gan, Masayasu Irie, Yoshinori Tsuboi, Hitoshi Tai, Tetsushi Sakiyama, Akihisa Sakamoto, Shinya Ishii, Atsuhiko Maeda, Yuki Iwayanagi, Norihito Shibahara, Mitsuko Shibuya, Gisaku Nakamura, Takeru Nambu, Akira Hayasaka, Futa Mimoto, Yuu Okura, Yuji Hori, Kiyoshi Habu, Manabu Wada, Takaaki Miura, Tatsuhiko Tachibana, Kazuo Honda, Hiroyuki Tsunoda, Takio Kitazawa, Yojiro Kawabe, Tomoyuki Igawa, Kunihiro Hattori, Jun-ichi Nezu
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-01497-7

Blue-light reception through quaternary transitions
Cited by: 21
Author(s): Christopher Engelhard, Ralph P. Diensthuber, Andreas Möglich, Robert Bittl
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-01491-z

Hydration effects on the efficacy of the Epidermal growth factor receptor kinase inhibitor afatinib
Cited by: 15
Author(s): Srinivasaraghavan Kannan, Mohan R. Pradhan, Garima Tiwari, Wei-Chong Tan, Balram Chowbay, Eng Huat Tan, Daniel Shao-Weng Tan, Chandra Verma
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-01880-4

Symmetry breaking during homodimeric assembly activates an E3 ubiquitin ligase
Cited by: 18
Author(s): Zhaofeng Ye, Patrick G. Needham, Samuel K. Estabrooks, Susan K. Whitaker, Brandon L. Garcia, Saurav Misra, Jeffrey L. Brodsky, Carlos J. Camacho
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-02219-9

Crystal structure of TAZ-TEAD complex reveals a distinct interaction mode from that of YAP-TEAD complex
Cited by: 72
Author(s): Hung Yi Kristal Kaan, Siew Wee Chan, Siew Kim Joyce Tan, Feng Guo, Chun Jye Lim, Wanjin Hong, Haiwei Song
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-02322-x

The molecular determinants for distinguishing between ubiquitin and NEDD8 by USP2
Cited by: 8
Author(s): Yung-Cheng Shin, Jou-Han Chen, Shih‐Chung Chang
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-02677-1

Probing the Roles of Calcium-Binding Sites during the Folding of Human Peptidylarginine Deiminase 4
Cited by: 15
Author(s): Yiliang Liu, Chien-Yun Lee, Yu-Ni Huang, Huiyi Chen, Guang‐Yaw Liu, Hui‐Chih Hung
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-01737-w

In silico analyses of deleterious missense SNPs of human apolipoprotein E3
Cited by: 24
Author(s): Állan S. Pires, William F. Porto, Octávio L. Franco, Sérgio Amorim de Alencar
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-02489-3

A Benzothiazole Derivative (5g) Induces DNA Damage And Potent G2/M Arrest In Cancer Cells
Cited by: 20
Author(s): Mahesh Hegde, Supriya V. Vartak, C. Kavitha, Hanumappa Ananda, Prasanna D. Shivaramu, Vidya Gopalakrishnan, Bibha Choudhary, Kanchugarakoppal S. Rangappa, Sathees C. Raghavan
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-02900-z

The malate sensing two-component system MaeKR is a non-canonical class of sensory complex for C4-dicarboxylates
Cited by: 5
Author(s): Laura Miguel-Romero, Patricia Casino, José María Landete, Vicente Monedero, Manuel Zúñiga, Alberto Marina
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-03003-5

Network Analysis Reveals the Recognition Mechanism for Dimer Formation of Bulb-type Lectins
Cited by: 15
Author(s): Yunjie Zhao, Yiren Jian, Zhichao Liu, Huan Liu, Qin Liu, Chen Chanyou, Zhangyong Li, Lu Wang, H. Howie Huang, Chen Zeng
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-03177-y

PH-Dependent Enantioselectivity of D-amino Acid Oxidase in Aqueous Solution
Cited by: 8
Author(s): Qingju Liu, Li Chen, Zhikun Zhang, Bibai Du, Yong Xiao, Kuo-Pin Yang, Lingling Gong, Li Wu, Xiangjun Li, Yi He
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-03506-1

Regulatory Functions of Cellular Energy Sensor SNF1-Related Kinase1 for Leaf Senescence Delay through ETHYLENE- INSENSITIVE3 Repression
Cited by: 31
Author(s): Geun Don Kim, Young Hee Cho, Sang Dong Yoo
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-03417-1

Novel Class IIa-Selective Histone Deacetylase Inhibitors Discovered Using an in Silico Virtual Screening Approach
Cited by: 36
Author(s): Kai Cheng Hsu, Chang Yi Liu, Tony Eight Lin, Jui Hua Hsieh, Tzu Ying Sung, Hui-Ju Tseng, Jinn-Moon Yang, Wei Huang
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-03088-y

Gorge Motions of Acetylcholinesterase Revealed by Microsecond Molecular Dynamics Simulations
Cited by: 24
Author(s): Shanmei Cheng, Wanling Song, Xiaojing Yuan, Yechun Xu
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-03335-2

Mechanical stability of talin rod controls cell migration and substrate sensing
Cited by: 43
Author(s): Rolle Rahikainen, Magdaléna von Essen, Markus Schaefer, Lei Qi, Latifeh Azizi, Conor Kelly, Teemu O. Ihalainen, Bernhard Wehrle-Haller, Martin Bastmeyer, Cai Huang, Vesa P. Hytönen
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-03513-2

Hydrogen gas protects IP3Rs by reducing disulfide bridges in human keratinocytes under oxidative stress
Cited by: 11
Author(s): Chieh‐Shan Wu, Wen Li Hsu, M. H. Tsai, Jin-Wei Liang, Jian Lu, Chia Jung Yen, Hsin Su Yu, Мами Нода, Cheng-Hsien Lu, Chu Huang Chen, Shian Jang Yan, Tohru Yoshioka
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-02756-3

The role of Antibody Vκ Framework 3 region towards Antigen binding: Effects on recombinant production and Protein L binding
Cited by: 33
Author(s): Chinh Tran-To Su, Wei-Li Ling, Wai-Heng Lua, Jun‐Jie Poh, Samuel Ken‐En Gan
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-03323-6

Conformational plasticity and evolutionary analysis of the myotilin tandem Ig domains
Cited by: 11
Author(s): Vid Puž, Miha Pavšič, Brigita Lenarčič, Kristina Djinović-Carugo
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-04481-3

Crucial role of 4-deoxy-L-erythro-5-hexoseulose uronate reductase for alginate utilization revealed by adaptive evolution in engineered Saccharomyces cerevisiae
Cited by: 9
Author(s): Fumiya Matsuoka, Makoto Hirayama, Takayuki Kashihara, Hideki Tanaka, Wataru Hashimoto, Kousaku Murata, Shigeyuki Kawai
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-04064-2

YvcK, a protein required for cell wall integrity and optimal carbon source utilization, binds uridine diphosphate-sugars
Cited by: 16
Author(s): Elodie Foulquier, Anne Galinier
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-02664-6

The role of the FliD C-terminal domain in pentamer formation and interaction with FliT
Cited by: 3
Author(s): Hee Jung Kim, Woongjae Yoo, Kyeong Sik Jin, Sangryeol Ryu, Hyung Ho Lee
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-04550-7

Crystal structure of Pelagibacterium halotolerans PE8: New insight into its substrate-binding pattern
Cited by: 4
Author(s): Ying‐Yi Huo, Suhua Li, Jing Huang, Zhen Rong, Zhao Wang, Zhengyang Li, Rui Ji, Siyun Kuang, Heng‐Lin Cui, Jixi Li, Xue-Wei Xu
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-03041-z

A channelopathy mutation in the voltage-sensor discloses contributions of a conserved phenylalanine to gating properties of Kv1.1 channels and ataxia
Cited by: 13
Author(s): Sonia Hasan, Cecilia Bove, Gabriella Silvestri, Elide Mantuano, Anna Modoni, Liana Veneziano, Lara Macchioni, Thérèse Hunter, Gary J. Hunter, Mauro Pessia, Maria Cristina D’Adamo
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-04518-7

A novel function for globulin in sequestering plant hormone: Crystal structure of Wrightia tinctoria 11S globulin in complex with auxin
Cited by: 7
Author(s): Pramod Kumar, Pooja Kesari, Sonali Dhindwal, Ashish Choudhary, Madhusudhanarao Katiki, . Neetu, Aparna Verma, Kiran Ambatipudi, Shailly Tomar, Ashwani Sharma, Girish Mishra, Pravindra Kumar
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-05388-9

A variation in PANK2 gene is causing Pantothenate kinase-associated Neurodegeneration in a family from Jammu and Kashmir – India
Cited by: 6
Author(s): Arshia Angural, Inderpal Singh, Ankit Mahajan, Pranav Pandoh, Manoj K. Dhar, Sanjana Kaul, Vivek Verma, Ekta Rai, Sushil Razdan, Kamal Kishore Pandita, Swarkar Sharma
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-05032-6

X-Ray snapshots of a pyridoxal enzyme: a catalytic mechanism involving concerted [1,5]-hydrogen sigmatropy in methionine γ-lyase
Cited by: 10
Author(s): Dan Sato, T. Shiba, T. Karaki, Wataru Yamagata, Tomoyoshi Nozaki, Takashi Nakazawa, Shigeharu Harada
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-05354-5

AhpC of the mycobacterial antioxidant defense system and its interaction with its reducing partner Thioredoxin-C
Cited by: 19
Author(s): Chui Fann Wong, Joon Shin, Malathy Sony Subramanian Manimekalai, Wuan Geok Saw, Zehao Yin, Shashi Bhushan, Arvind Kumar, Priya Ragunathan, Gerhard Grüber
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-05325-w

NEK1 kinase domain structure and its dynamic protein interactome after exposure to Cisplatin
Cited by: 25
Author(s): Talita Diniz Melo‐Hanchuk, Priscila Ferreira Slepicka, Gabriela Vaz Meirelles, Fernanda Luisa Basei, D.V. Lovato, Daniela Campos Granato, Bianca Alves Pauletti, Romênia R. Domingues, Adriana Franco Paes Leme, Alessandra Luíza Pelegrini, Guido Lenz, S. Knapp, J.M. Elkins, Jörg Kobarg
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-04554-3

Phthalide Derivatives from Angelica Sinensis Decrease Hemoglobin Oxygen Affinity: A New Allosteric-Modulating Mechanism and Potential Use as 2,3-BPG Functional Substitutes
Cited by: 8
Author(s): Wei‐Ren Chen, Youqing Yu, Muhammad Zulfajri, Ping-Cheng Lin, Chia C. Wang
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-05911-y

Ergodicity breaking on the neuronal surface emerges from random switching between diffusive states
Cited by: 72
Author(s): Aleksander Weron, Krzysztof Burnecki, Elizabeth J. Akin, Laura Solé, Michał Balcerek, Michael M. Tamkun, Diego Krapf
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-05931-8

Targeting PTPRZ inhibits stem cell-like properties and tumorigenicity in glioblastoma cells
Cited by: 50
Author(s): Akihiro Fujikawa, Hajime Sugawara, Taisaku Tanaka, Masahito Matsumoto, Kazuya Kuboyama, Ryoko Suzuki, Naomi Tanga, Atsuto Ogata, Makoto Masumura, Masaharu Noda
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-05534-3

Modulation of RNA primer formation by Mn(II)-substituted T7 DNA primase
Cited by: 1
Author(s): Stefan Ilić, Sabine R. Akabayov, Roy Froimovici, Ron Meiry, Dan Vilenchik, Alfredo J. Hernandez, Haribabu Arthanari, Barak Akabayov
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-06277-x

Efficient generation of single domain antibodies with high affinities and enhanced thermal stabilities
Cited by: 7
Author(s): Naoya Shinozaki, Ryuji Hashimoto, Kiichi Fukui, Susumu Uchiyama
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-06319-4

Direct binding to GABARAP family members is essential for HIV-1 Nef plasma membrane localization
Cited by: 11
Author(s): Alexandra Boeske, Melanie Schwarten, Peixiang Ma, Markus Tusche, Jessica Mötter, Christina Möller, Philipp Neudecker, Silke Hoffmann, Dieter Willbold
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-05449-z

How cholesteryl ester transfer protein can also be a potential triglyceride transporter
Cited by: 9
Author(s): Venkat R. Chirasani, Sanjib Senapati
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-05424-8

Adaptive evolution of a hyperthermophilic archaeon pinpoints a formate transporter as a critical factor for the growth enhancement on formate
Cited by: 12
Author(s): Hae-Chang Jung, Seong Hyuk Lee, Sung-Mok Lee, Young Jun An, Jung-Hyun Lee, Hyun Sook Lee, Sung Gyun Kang
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-07266-w

Observed crowding effects on Mycobacterium tuberculosis 2-trans-enoyl-ACP (CoA) reductase enzyme activity are not due to excluded volume only
Cited by: 11
Author(s): Mariane Rotta, Luís Fernando Saraiva Macedo Timmers, Carlos Sequeiros-Borja, Cristiano Valim Bizarro, Osmar Norberto de Souza, Daniel Silas Veras dos Santos, Luiz Augusto Basso
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-07457-5

A camelid single-domain antibody neutralizes botulinum neurotoxin A by blocking host receptor binding
Cited by: 15
Author(s): Guorui Yao, Kwok Ho Lam, Jasmin Weisemann, Lisheng Peng, Nadja Krez, Kay Perry, Charles B. Shoemaker, Min Dong, Andreas Rummel, Rongsheng Jin
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-08213-5

Characterization of C-terminal structure of MinC and its implication in evolution of bacterial cell division
Cited by: 9
Author(s): Suwen Yang, Qingya Shen, Shu Wang, Chunqiao Song, Zhen Lei, Shengnan Han, Xiaoying Zhang, Jimin Zheng, Zongchao Jia
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-08130-7

Kinetic and Structural Characterization of the Effects of Membrane on the Complex of Cytochrome b 5 and Cytochrome c
Cited by: 15
Author(s): Katherine A. Gentry, Elke Prade, Carlo Barnaba, Meng Zhang, Mukesh Mahajan, Sang Choul Im, G.M. Anantharamaiah, Shigeaki Nagao, Lucy Waskell, Ayyalusamy Ramamoorthy
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-07385-4

Extreme anoxia tolerance in crucian carp and goldfish through neofunctionalization of duplicated genes creating a new ethanol-producing pyruvate decarboxylase pathway
Cited by: 44
Author(s): Cathrine E. Fagernes, Kåre‐Olav Stensløkken, Åsmund K. Røhr, Michael Berenbrink, Stian Ellefsen, Göran Nilsson
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-08408-w

In silico analysis of Glanzmann variants of Calf-1 domain of αIIbβ3 integrin revealed dynamic allosteric effect
Cited by: 27
Author(s): Matthieu Goguet, Tarun Jairaj Narwani, Rachel Petermann, Vincent Jallu, Alexandre G. de Brevern
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-08368-1

A new method to investigate the catalytic mechanism of YhdE pyrophosphatase by using a pyrophosphate fluorescence probe
Cited by: 4
Author(s): Qingya Shen, Hongwei Tan, Guo‐wen Xing, Jimin Zheng, Zongchao Jia
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-05326-9

RGD delivery of truncated coagulase to tumor vasculature affords local thrombotic activity to induce infarction of tumors in mice
Cited by: 32
Author(s): Rana Jahanban‐Esfahlan, Khaled Seidi, Hassan Monhemi, Amir Daei Farshchi Adli, Babak Minofar, Payman Zare, Davoud Farajzadeh, Safar Farajnia, Ramezan Behzadi, Mehran Mesgari Abbasi, Nosratollah Zarghami, Tahereh Javaheri
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-09268-0

CRISPR/Cas9 editing reveals novel mechanisms of clustered microRNA regulation and function
Cited by: 31
Author(s): Lazaros Lataniotis, Andreas Albrecht, Fatma O. Kok, Clinton Monfries, Lorena Benedetti, Nathan D. Lawson, Simon M. Hughes, Kathleen Steinhöfel, Manuel Mayr, Anna Zampetaki
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-08252-y

Neodiversification of homeologous CLAVATA1-like receptor kinase genes in soybean leads to distinct developmental outcomes
Cited by: 17
Author(s): Saeid Mirzaei, Jacqueline Batley, Tarik El‐Mellouki, Shiming Liu, Khalid Meksem, Brett J. Ferguson, Peter M. Gresshoff
Software Mentions: 1
Published: almost 9 years ago

Projects: pypi: PyMOL

Science Score: 90/100

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Papers Mentioning PyMOL 8,266