Ecosyste.ms: Papers

10.1038/s41598-019-47034-6

Comparative structural and evolutionary analyses predict functional sites in the artemisinin resistance malaria protein K13
Cited by: 27
Author(s): Romain Coppée, Daniel C. Jeffares, Maria A. Miteva, Audrey Sabbagh, Jérôme Clain
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-47018-6

Tryptophan Oxidation in the UQCRC1 Subunit of Mitochondrial Complex III (Ubiquinol-Cytochrome C Reductase) in a Mouse Model of Myodegeneration Causes Large Structural Changes in the Complex: A Molecular Dynamics Simulation Study
Cited by: 14
Author(s): Sruthi Unni, Saravanamuthu Thiyagarajan, M. M. Srinivas Bharath, Balasundaram Padmanabhan
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-47135-2

In Silico Characterization of the Binding Modes of Surfactants with Bovine Serum Albumin
Cited by: 29
Author(s): Osita Sunday Nnyigide, Sun‐Gu Lee, Kyu Hyun
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-47608-4

Differential homotypic and heterotypic interactions of antigen 43 (Ag43) variants in autotransporter-mediated bacterial autoaggregation
Cited by: 16
Author(s): Valentin Ageorges, Marion Schiavone, Grégory Jubelin, Nelly Caccia, Philippe Ruiz, Ingrid Chafsey, Xavier Bailly, Étienne Dague, Sabine Léroy, Jason J. Paxman, Begoña Heras, Frédérique Chaucheyras‐Durand, Amanda E. Rossiter, Ian R. Henderson, Mickaël Desvaux
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-47591-w

Structural basis for broad substrate specificity of UDP-glucose 4-epimerase in the human milk oligosaccharide catabolic pathway of Bifidobacterium longum
Cited by: 16
Author(s): Young‐Woo Nam, Mamoru Nishimoto, T. Arakawa, Motomitsu Kitaoka, Shinya Fushinobu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-47637-z

Microbial diversity analysis and screening for novel xylanase enzymes from the sediment of the Lobios Hot Spring in Spain
Cited by: 32
Author(s): Kamila Knapik, Manuel Becerra, María-Isabel González-Siso
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-48014-6

Autosomal Dominant Tubulointerstitial Kidney Disease with Adult Onset due to a Novel Renin Mutation Mapping in the Mature Protein
Cited by: 15
Author(s): Céline Schaeffer, Claudia Izzi, Andrea Vettori, Elena Pasqualetto, Davide Cittaro, Dejan Lazarevic, Gianluca Caridi, Barbara Gnutti, Cinzia Mazza, Luca Jovine, Francesco Scolari, Luca Rampoldi
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-48323-w

The Fab portion of immunoglobulin G contributes to its binding to Fcγ receptor III
Cited by: 33
Author(s): Rina Yogo, Yukuya Yamaguchi, Hiroki Watanabe, Hirokazu Yagi, Tadashi Satoh, Mahito Nakanishi, Masayoshi Onitsuka, Takeshi Ômasa, Mari Shimada, Takahiro Maruno, Tetsuo Torisu, Shio Watanabe, Daisuke Higo, Takayuki Uchihashi, Saeko Yanaka, Susumu Uchiyama, Koichi Kato
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-48480-y

A novel thermostable d-amino acid oxidase of the thermophilic fungus Rasamsonia emersonii strain YA
Cited by: 13
Author(s): Yuya Shimekake, Takehiro Furuichi, Katsumasa Abe, Yoshio Kera, Shouji Takahashi
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-48176-3

Citrullination facilitates cross-reactivity of rheumatoid factor with non-IgG1 Fc epitopes in rheumatoid arthritis
Cited by: 9
Author(s): Malgorzata Trela, Shantha Perera, Thomas Sheeran, Paul Rylance, Paul N. Nelson, Kesley Attridge
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-48496-4

Binding of the protein ICln to α-integrin contributes to the activation of IClswell current
Cited by: 3
Author(s): Andreas Schedlbauer, Grazia Tamma, Simona Rodighiero, Davide Antonio Civello, Margherita Tamplenizza, Karin Ledolter, Charity Nofziger, Wolfgang Patsch, Robert Konrat, Markus Paulmichl, Silvia Dossena
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-49094-0

Engineered Carbonic Anhydrase VI-Mimic Enzyme Switched the Structure and Affinities of Inhibitors
Cited by: 4
Author(s): Justina Kazokaitė, Visvaldas Kairys, Joana Smirnovienė, A. Smirnov, E. Manakova, Martti Tolvanen, Seppo Parkkila, Daumantas Matulis
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-48751-8

Different Grp94 components interact transiently with the myocilin olfactomedin domain in vitro to enhance or retard its amyloid aggregation
Cited by: 10
Author(s): D.J.E. Huard, Alex P. Jonke, Matthew P. Torres, Raquel L. Lieberman
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-49921-4

VX-770-mediated potentiation of numerous human CFTR disease mutants is influenced by phosphorylation level
Cited by: 29
Author(s): Guiying Cui, Brandon Stauffer, Barry R. Imhoff, András Rab, Jeong S. Hong, Eric J. Sorscher, Nael A. McCarty
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-49960-x

The specific seroreactivity to ∆Np73 isoforms shows higher diagnostic ability in colorectal cancer patients than the canonical p73 protein
Cited by: 14
Author(s): María Garranzo‐Asensio, Ana Guzmán-Aranguez, Carmen Povés, María Jesús Fernández-Aceñero, Ana Montero‐Calle, María Ángeles Cerón, Servando Fernández-Díez, Núria Rodríguez, Marta Gómez de Cedrón, Ana Ramı́rez de Molina, Gemma Domínguez, Rodrigo Barderas
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-50050-1

A processive endoglucanase with multi-substrate specificity is characterized from porcine gut microbiota
Cited by: 16
Author(s): Weijun Wang, Tania Archbold, Joseph S. Lam, Matthew S. Kimber, Ming Z. Fan
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-50105-3

Trp–His covalent adduct in bilirubin oxidase is crucial for effective bilirubin binding but has a minor role in electron transfer
Cited by: 8
Author(s): T. Kovaľ, Leona Švecová, Lars Østergaard, Tereza Skálová, Jarmila Dušková, Jindřich Hašek, Petr Kolenko, Karla Fejfarová, Jan Stránský, Mária Trundová, Jan Dohnálek
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-50213-0

The importance of the quaternary structure to represent conformational ensembles of the major Mycobacterium tuberculosis drug target
Cited by: 5
Author(s): Renata Fioravanti Tarabini, Luís Fernando Saraiva Macedo Timmers, Carlos Sequeiros-Borja, Osmar Norberto de Souza
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-50211-2

New protein-DNA complexes in archaea: a small monomeric protein induces a sharp V-turn DNA structure
Cited by: 3
Author(s): Karine Loth, Justine Largillière, Franck Coste, Françoise Culard, C. Landon, A.F. Delmas, B. Castaing, Françoise Paquet
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-50678-z

Structural analysis of fungal pathogenicity-related casein kinase α subunit, Cka1, in the human fungal pathogen Cryptococcus neoformans
Cited by: 1
Author(s): Belinda X. Ong, Youngki Yoo, Myeong Gil Han, Jun Bae Park, Myung Kyung Choi, Yeseul Choi, Jeon Soo Shin, Yong-Sun Bahn, Hyun Soo Cho
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-51174-0

Crystal structure of ErmE - 23S rRNA methyltransferase in macrolide resistance
Cited by: 9
Author(s): A. Stsiapanava, M. Selmer
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-51059-2

Vitamin K1 prevents diabetic cataract by inhibiting lens aldose reductase 2 (ALR2) activity
Cited by: 12
Author(s): Thiagarajan Raman, M.K.N. Sai Varsha, V. Srinivasan, R. Ravichandran, K. Saraboji
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-51266-x

Switch of the interactions between the ribosomal stalk and EF1A in the GTP- and GDP-bound conformations
Cited by: 10
Author(s): Kei Maruyama, Hirotatsu Imai, Momoko Kawamura, Sonoko Ishino, Yuji Ishino, Kosuke Ito, Toshio Uchiumi
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-51239-0

A docking-based structural analysis of geldanamycin-derived inhibitor binding to human or Leishmania Hsp90
Cited by: 14
Author(s): Luana C. Palma, Luiz Felipe Ferreira, Antônio Luis de Oliveira Almeida Petersen, Beatriz Rocha Simões Dias, Juliana Perrone Bezerra de Menezes, Diogo Rodrigo Magalhães Moreira, Marcelo Zaldini Hernandes, Patrícia Sampaio Tavares Veras
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-51480-7

Lignan enriched fraction (LRF) of Phyllanthus amarus promotes apoptotic cell death in human cervical cancer cells in vitro
Cited by: 11
Author(s): Subhabrata Paul, Debashis Patra, Rita Kundu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-51005-2

Ole e 15 and its human counterpart -PPIA- chimeras reveal an heterogeneous IgE response in olive pollen allergic patients
Cited by: 5
Author(s): Pablo San Segundo‐Acosta, Carmen Oeo-Santos, Ana Navas, Aurora Jurado, Mayte Villalba, Rodrigo Barderas
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-51455-8

Rigorous sampling of docking poses unveils binding hypothesis for the halogenated ligands of L-type Amino acid Transporter 1 (LAT1)
Cited by: 20
Author(s): Natesh Singh, Bruno O. Villoutreix, Gerhard F. Ecker
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-51844-z

Discovery of dual-activity small-molecule ligands of Pseudomonas aeruginosa LpxA and LpxD using SPR and X-ray crystallography
Cited by: 19
Author(s): Kyle G. Kroeck, Sacco, Emmanuel W. Smith, X. Zhang, D. Shoun, Afroza Akhtar, Sophie E. Darch, Frederick Cohen, Logan D. Andrews, John E. Knox, Y. Chen
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-51947-7

Macrophage migration inhibitory factor of Syrian golden hamster shares structural and functional similarity with human counterpart and promotes pancreatic cancer
Cited by: 8
Author(s): Voddu Suresh, Rajivgandhi Sundaram, Pujarini Dash, Surendra Chandra Sabat, Debendra K. Mohapatra, Sneha Mohanty, Dileep Vasudevan, Shantibhusan Senapati
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-51882-7

Structural determination of Enzyme-Graphene Nanocomposite Sensor Material
Cited by: 2
Author(s): D.K. Rai, Manickam Gurusaran, Volker S. Urban, Kiana Aran, Lulu Ma, Pingzuo Li, Shuo Qian, Tharangattu N. Narayanan, Pulickel M. Ajayan, Dorian Liepmann, K. Sekar, María-Efigenia Álvarez-Cao, Juan-José Escuder-Rodríguez, M. Esperanza Cerdán, María-Isabel González-Siso, Sowmya Viswanathan, Ramasamy Paulmurugan, V. Renugopalakrishnan
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-52239-w

The subcellular localization of bHLH transcription factor TCF4 is mediated by multiple nuclear localization and nuclear export signals
Cited by: 6
Author(s): Beata Greb‐Markiewicz, Wioletta Kazana, Mirosław Zarębski, Andrzej Ożyhar
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-52744-y

Recombinant B2L and Kisspeptin-54 DNA Vaccine Induces Immunity Against Orf Virus and Inhibits Spermatogenesis In Rats
Cited by: 9
Author(s): Teketay Wassie, Fanmei Zeng, Xunping Jiang, Guiqiong Liu, Shishay Girmay, Min Zhang, Chenhui Liu, Dong Bo, S. Sohail Ahmed
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-53171-9

A LONELY GUY protein of Bordetella pertussis with unique features is related to oxidative stress
Cited by: 5
Author(s): Filippo Moramarco, Alfredo Pezzicoli, Laura Salvini, Rosanna Leuzzi, Werner Pansegrau, Enrico Balducci
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-53948-y

Deciphering the molecular specificity of phenolic compounds as inhibitors or glycosyl acceptors of β-fructofuranosidase from Xanthophyllomyces dendrorhous
Cited by: 4
Author(s): M. Ramirez-Escudero, Noa Míguez, María Gimeno‐Pérez, Antonio Ballesteros, María Fernández‐Lobato, Francisco J. Plou, J. Sanz‐Aparicio
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-54198-8

Cardiolipin is an Optimal Phospholipid for the Assembly, Stability, and Proper Functionality of the Dimeric Form of NhaA Na+/H+ Antiporter
Cited by: 15
Author(s): Abraham Rimon, Ramakanta Mondal, Assaf Friedler, Etana Padan
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-54207-w

RSH enzyme diversity for (p)ppGpp metabolism in Phaeodactylum tricornutum and other diatoms
Cited by: 13
Author(s): Luisana Avilán, Carine Puppo, Adrien Villain, Emmanuelle Bouveret, Benoît Menand, Ben Field, Brigitte Gontero
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-54169-z

A diarylamine derived from anthranilic acid inhibits ZIKV replication
Cited by: 14
Author(s): Suely Silva, Jacqueline Farinha Shimizu, Débora Moraes de Oliveira, Letícia Ribeiro de Assis, Cíntia Bittar, Melina Mottin, Bruna Katiele de Paula Sousa, Nathalya Cristina de Moraes Roso Mesquita, Luís Octávio Regasini, Paula Rahal, Glaucius Oliva, Alexander L. Perryman, Sean Ekins, Carolina Horta Andrade, Luíz Ricardo Goulart, Robinson Sabino-Silva, Andres Merits, Mark Harris, Ana Carolina Gomes Jardim
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-53736-8

Molecular and structural insights into an asymmetric proteolytic complex (ClpP1P2) from Mycobacterium smegmatis
Cited by: 16
Author(s): Jyotsna Nagpal, Jason J. Paxman, Jessica E. Zammit, Adnan Ali H. Alhuwaider, Kaye N. Truscott, Begoña Heras, David A. Dougan
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-54211-0

Dual Action of Sulfated Hyaluronan on Angiogenic Processes in Relation to Vascular Endothelial Growth Factor-A
Cited by: 26
Author(s): Linda Koehler, Gloria Ruiz-Gómez, Kanagasabai Balamurugan, Sandra Rother, Joanna Freyse, Stephanie Möller, Matthias Schnabelrauch, Sebastian Köhling, Snežana Djordjević, Dieter Scharnweber, Jörg Rademann, M. Teresa Pisabarro, Vera Hintze
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-54686-x

Upregulation of tropomyosin alpha-4 chain in patients’ saliva with oral squamous cell carcinoma as demonstrated by Phage display
Cited by: 2
Author(s): Paulo Eustáquio de Faria, Ana Carneiro, Renata Binato, Rafael Nascimento, Paula de Souza Santos, Deborah Fagundes, Sindeval José da Silva, Adriano Mota Loyola, Eliana Abdelhay, Luíz Ricardo Goulart
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-54963-9

4,5-Disubstituted 1,2,3-triazoles: Effective Inhibition of Indoleamine 2,3-Dioxygenase 1 Enzyme Regulates T cell Activity and Mitigates Tumor Growth
Cited by: 22
Author(s): Subhankar Panda, Nirmalya Pradhan, S. Chatterjee, Sudhir Morla, Abhishek Saha, Arijit Roy, Sachin Kumar, Arindam Bhattacharyya, Debasis Manna
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-54918-0

Structural and biochemical basis of the formation of isoaspartate in the complementarity-determining region of antibody 64M-5 Fab
Cited by: 6
Author(s): Hideshi Yokoyama, Ryuta Mizutani, Shuji Noguchi, Nobuaki Hayashida
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-54970-w

Interaction of human hemoglobin and semi-hemoglobins with the Staphylococcus aureus hemophore IsdB: a kinetic and mechanistic insight
Cited by: 18
Author(s): Eleonora Gianquinto, Ilaria Moscetti, Omar De Bei, Barbara Campanini, Marialaura Marchetti, F. Javier Luque, Salvatore Cannistraro, Luca Ronda, Anna Rita Bizzarri, Francesca Spyrakis, Stefano Bettati
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-54892-7

Investigation and Restoration of BEST1 Activity in Patient-derived RPEs with Dominant Mutations
Cited by: 26
Author(s): Changyi Ji, Yao Li, Alec Kittredge, Austin Hopiavuori, Nancy E. Ward, Peng Yao, Youichi Fukuda, Yu Zhang, Stephen H. Tsang, Tingting Yang
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-55654-1

Structural basis for the activation and inhibition of Sirtuin 6 by quercetin and its derivatives
Cited by: 51
Author(s): W. You, Wei Zheng, Sandra Weiss, Katrin F. Chua, Clemens Steegborn
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-55581-1

Conformational transitions induced by γ-amino butyrate binding in GabR, a bacterial transcriptional regulator
Cited by: 5
Author(s): Mario Frezzini, Leonardo Guidoni, Stefano Pascarella
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-55923-z

An experiment-informed signal transduction model for the role of the Staphylococcus aureus MecR1 protein in β-lactam resistance
Cited by: 12
Author(s): Bruno S. Belluzo, Luciano A. Abriata, Estefanía Giannini, Damila Mihovilcevic, Matteo Dal Peraro, Leticia I. Llarrull
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-56812-1

Development of hypoallergenic variants of the major horse allergen Equ c 1 for immunotherapy by rational structure based engineering
Cited by: 3
Author(s): Jaana Haka, Merja Niemi, Pekka Mattila, Janne Jänis, Kristiina Takkinen, Juha Rouvinen
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-57187-z

Domain-mediated interactions for protein subfamily identification
Cited by: 2
Author(s): Heetak Lee, Inhae Kim, Seong Kyu Han, Donghyo Kim, JungHo Kong, Sanguk Kim
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-57498-6

Variation among S-locus haplotypes and among stylar RNases in almond
Cited by: 8
Author(s): Shashi N. Goonetilleke, Adam E. Croxford, Timothy J. March, M. Wirthensohn, Mária Hrmová, D. E. Mather
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-57229-6

Identification of emulsifier potato peptides by bioinformatics: application to omega-3 delivery emulsions and release from potato industry side streams
Cited by: 40
Author(s): Pedro J. Moreno, Simon Gregersen, Elham R. Nedamani, Tobias Hegelund Olsen, Paolo Marcatili, Michael Toft Overgaard, Mogens L. Andersen, Egon Bech Hansen, Charlotte Jacobsen
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-57593-8

Functional mechanism and pathogenic potential of MYRF ICA domain mutations implicated in birth defects
Cited by: 10
Author(s): Hongjoo An, Chuandong Fan, Mohamed Sharif, Dongkyeong Kim, Yannick Poitelon, Yungki Park
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-57658-8

Screening of natural compounds that targets glutamate racemase of Mycobacterium tuberculosis reveals the anti-tubercular potential of flavonoids
Cited by: 27
Author(s): Alka Pawar, Prakash Jha, Madhu Chopra, Uma Chaudhry, Daman Saluja
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-58371-2

Supramolecular tholos-like architecture constituted by archaeal proteins without functional annotation
Cited by: 8
Author(s): Maho Yagi-Utsumi, Arunima Sikdar, Chihong Song, Jimin Park, Rintaro Inoue, Hiroki Watanabe, Raymond N. Burton‐Smith, Toshiya Kozai, Tatsuya Suzuki, Atsuji Kodama, Kentaro Ishii, Hirokazu Yagi, Tadashi Satoh, Susumu Uchiyama, Takayuki Uchihashi, Keehyoung Joo, Jooyoung Lee, Masaaki Sugiyama, Kazuyoshi Murata, Koichi Kato
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-58845-3

Exome sequencing revealed DNA variants in NCOR1, IGF2BP1, SGLT2 and NEK11 as potential novel causes of ketotic hypoglycemia in children
Cited by: 6
Author(s): Yazeid Alhaidan, Martin Jakob Larsen, Anders Schou, Maria Halldin Stenlid, Mohammed Al Balwi, Henrik Thybo Christesen, Klaus Brusgaard
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-58873-z

Identification and characterization of a bacterial core methionine synthase
Cited by: 5
Author(s): Darja Deobald, Rafael Hanna, Shahab Shahryari, Gunhild Layer, Lorenz Adrian
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-59455-9

An ENU-induced mutation in Twist1 transactivation domain causes hindlimb polydactyly with complete penetrance and dominant-negatively impairs E2A-dependent transcription
Cited by: 4
Author(s): Runze Chen, Xuebo Cheng, Yuexi Tan, Tien‐Chien Chang, Hailong Lv, Yichang Jia
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-59460-y

Novel and selective inactivators of Triosephosphate isomerase with anti-trematode activity
Cited by: 11
Author(s): Florencia Ferraro, Ileana Corvo, Lucia Bergalli, Andrea Ilarraz, Mauricio Cabrera, J. Gil, Brian M. Susuki, Conor R. Caffrey, David J. Timson, Xavier Robert, Christophe Guillon, Teresa Freire, Guzmán Álvarez
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-59571-6

Structure of the agonist 12–HHT in its BLT2 receptor-bound state
Cited by: 8
Author(s): Fabrice Giusti, Marina Casiraghi, Élodie Point, Marjorie Damian, Jutta Rieger, Christel Le Bon, Alexandre Pozza, Karine Moncoq, Jean-Louis Banères, Laurent J. Catoire
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-60060-z

Antifreeze protein complements cryoprotective dehydration in the freeze-avoiding springtail Megaphorura arctica
Cited by: 14
Author(s): Laurie A. Graham, Marie E Boddington, Martin Holmstrup, Peter L. Davies
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-60263-4

Effects of SDS on the activity and conformation of protein tyrosine phosphatase from thermus thermophilus HB27
Cited by: 13
Author(s): Hai Hou, Huawei He, Yejing Wang
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-60319-5

Development of the clinical candidate PBD-C06, a humanized pGlu3-Aβ-specific antibody against Alzheimer’s disease with reduced complement activation
Cited by: 15
Author(s): Thore Hettmann, Stephen D. Gillies, Martin Kleinschmidt, Anke Piechotta, Koki Makioka, Cynthia A. Lemere, Stephan Schilling, Jens‐Ulrich Rahfeld, Inge Lues
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-60425-4

Natural selection supports escape from concerted evolution of a recently duplicated CEACAM1 paralog in the ruminant CEA gene family
Cited by: 1
Author(s): Jana Hänske, Tim Hammacher, Franziska Grenkowitz, Martin Mansfeld, Tung Huy Dau, Pavlo Maksimov, Chr. Friedrich, Wolfgang Zimmermann, Robert Kammerer
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-59925-0

Combined cardio-protective ability of syringic acid and resveratrol against isoproterenol induced cardio-toxicity in rats via attenuating NF-kB and TNF-α pathways
Cited by: 42
Author(s): S Manjunatha, Althaf Hussain Shaik, Elke Prasad, Suliman Yousef Alomar, Altaf Mohammad, Lakshmi Devi Kodidhela
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-60824-7

Modification of an Anopheles gambiae odorant binding protein to create an array of chemical sensors for detection of drugs
Cited by: 18
Author(s): Khasim Cali, Krishna Persaud
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-60332-8

Structure and mechanism of a redesigned multidrug transporter from the Major Facilitator Superfamily
Cited by: 9
Author(s): Heng Wu, J. Symerský, Min Lu
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-60953-z

Human glutaredoxin-1 can transfer copper to isolated metal binding domains of the P1B-type ATPase, ATP7B
Cited by: 8
Author(s): Shadi Maghool, Sharon La Fontaine, Blaine R. Roberts, Ann H. Kwan, M.J. Maher
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-60954-y

Cellular metabolic activity marker via selective turn-ON detection of transporter protein using nitrobenzoxadiazole-based fluorescent reporter
Cited by: 12
Author(s): Tanoy Dutta, Kaushik Pal, Apurba Lal Koner
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-61107-x

Selective Binding of HSC70 and its Co-Chaperones to Structural Hotspots on CFTR
Cited by: 21
Author(s): Imad Baaklini, Conrado de Campos Gonçalves, Gergely L. Lukacs, Jason C. Young
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-61182-0

Silicon amendment induces synergistic plant defense mechanism against pink stem borer (Sesamia inferens Walker.) in finger millet (Eleusine coracana Gaertn.)
Cited by: 30
Author(s): Kundansing Rajpalsing Jadhao, Anuradha Bansal, Gyana Ranjan Rout
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-61334-2

Expression and distribution of CD151 as a partner of alpha6 integrin in male germ cells
Cited by: 9
Author(s): Jana Jankovičová, Michaela Frolíková, Veronika Páleníková, Eliška Valášková, Jiří Černý, Petra Sečová, Michaela Bartóková, Ľubica Horovská, Pavla Maňásková-Postlerová, Jana Antalíková, Kateřina Komrsková
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-61433-0

T-Cell Receptor Variable β Domains Rigidify During Affinity Maturation
Cited by: 18
Author(s): Monica L. Fernández‐Quintero, Clarissa A. Seidler, Klaus R. Liedl
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-61529-7

Seeking high-priority mutations enabling successful antibody-breeding: systematic analysis of a mutant that gained over 100-fold enhanced affinity
Cited by: 9
Author(s): Hiroyuki Oyama, Yuki Kiguchi, Izumi Morita, Chika Yamamoto, Yuka Higashi, Miku Taguchi, Tatsuya Tagawa, Yuri Enami, Yuriko Takamine, Hirotsugu Hasegawa, Atsuko Takeuchi, N. Kobayashi
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-61697-6

Identifying mutation hotspots reveals pathogenetic mechanisms of KCNQ2 epileptic encephalopathy
Cited by: 37
Author(s): Jiaren Zhang, Eung Chang Kim, Congcong Chen, Erik Procko, Shashank Pant, Kei Fong Lam, Jaimin Patel, Rebecca Choi, Mary Hong, Dhruv Joshi, Eric Bolton, Emad Tajkhorshid, Hee Jung Chung
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-61677-w

Modulation of glycine receptor single-channel conductance by intracellular phosphorylation
Cited by: 13
Author(s): Gustavo Moraga-Cid, Victoria P. San Martín, César O. Lara, Braulio Muñoz, Ana M. Marileo, Anggelo Sazo, Carola Muñoz-Montesino, Jorge Fuentealba, Patricio Castro, Leonardo Guzmán, Carlos F. Burgos, Hanns Ulrich Zeilhofer, Luis G. Aguayo, Pierre‐Jean Corringer, Gonzalo E. Yévenes
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-62332-0

Cellular processes involved in lung cancer cells exposed to direct current electric field
Cited by: 1
Author(s): Huijuan Li, Shibin Liu, Xue Yang, Yongqian Du, Jiayi Luo, Jie Tan, Yu Sun
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-62427-8

Crystal structure of pathogenic Staphylococcus aureus lipase complex with the anti-obesity drug orlistat
Cited by: 15
Author(s): Kengo Kitadokoro, M. Tanaka, Takaaki Hikima, Yukiko Okuno, Masaki Yamamoto, Shigeki Kamitani
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-62423-y

Inhibition of the activity of HIV-1 protease through antibody binding and mutations probed by molecular dynamics simulations
Cited by: 13
Author(s): Apoorva Badaya, Yellamraju U. Sasidhar
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-62833-y

Dynamic plasticity of the lipid antigen-binding site of CD1d is crucially favoured by acidic pH and helper proteins
Cited by: 3
Author(s): Bruno Cuevas-Zuviría, Marina Mínguez-Toral, Araceli Díaz‐Perales, María Garrido‐Arandia, Luis F. Pacios
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-62606-7

Structure-based engineering of anti-GFP nanobody tandems as ultra-high-affinity reagents for purification
Cited by: 26
Author(s): Ziyue Zhang, Yao Wang, Yu Ding, Motoyuki Hattori
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-64115-z

Crystal structure of Type IX secretion system PorE C-terminal domain from Porphyromonas gingivalis in complex with a peptidoglycan fragment
Cited by: 11
Author(s): Nhung Thi Trang Trinh, Hieu Quang Tran, Quyen Van Dong, Christian Cambillau, Alain Roussel, Philippe Leone
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-64258-z

The mechanism of loop C-neonicotinoid interactions at insect nicotinic acetylcholine receptor α1 subunit predicts resistance emergence in pests
Cited by: 9
Author(s): Shinichi Shimada, M. Kamiya, Sho Shigetou, Kakeru Tomiyama, Yuma Komori, Leo Magara, Makoto Ihara, Kazuhiko Matsuda
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-64860-1

Aggregation of M3 (E376D) variant of alpha1- antitrypsin
Cited by: 2
Author(s): Aadil Bashir, Younis Hazari, Debnath Pal, Dibyajyoti Maity, Samirul Bashir, Laishram Rajendrakumar Singh, Naveed Nazir Shah, Khalid Majid Fazili
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-65104-y

Establishment of an in vitro RNA polymerase transcription system: a new tool to study transcriptional activation in Borrelia burgdorferi
Cited by: 6
Author(s): William K. Boyle, Laura S. Hall, Anthony A. Armstrong, Daniel P. Dulebohn, D. Scott Samuels, Frank C. Gherardini, Travis J. Bourret
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-65935-9

Structural and catalytic analysis of two diverse uridine phosphorylases in Phytophthora capsici
Cited by: 5
Author(s): Cancan Yang, Jing Li, Zhuochun Huang, Xuefa Zhang, Xiaolei Gao, Chunyuang Zhu, Paul F. Morris, Xiuguo Zhang
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-66164-w

Physicochemical-guided design of cathelicidin-derived peptides generates membrane active variants with therapeutic potential
Cited by: 13
Author(s): Nelson Gomes Junior de Oliveira, Marlon Henrique Cardoso, Nadya Velikova, Marcel Giesbers, Jerry M. Wells, Taia Maria Berto Rezende, Renko de Vries, Octávio Luiz Franco
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-67002-9

Albumin-neprilysin fusion protein: understanding stability using small angle X-ray scattering and molecular dynamic simulations
Cited by: 8
Author(s): Alina Kulakova, Sowmya Indrakumar, Pernille Sønderby Tuelung, Sujata Mahapatra, Werner Streicher, Günther H.J. Peters, Pernille Harris
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-66596-4

Adeno-associated virus-binding antibodies detected in cats living in the Northeastern United States lack neutralizing activity
Cited by: 6
Author(s): Kei Adachi, Gregory A. Dissen, Alejandro Lomniczi, Qing Xie, Sergio Ojeda, Hiroyuki Nakai
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-66961-3

Synergistic stabilization by nitrosoglutathione-induced thiol modifications in the stromal interaction molecule-2 luminal domain suppresses basal and store operated calcium entry
Cited by: 4
Author(s): Matthew J. Novello, Jinhui Zhu, MengQi Zhang, Qingping Feng, Peter B. Stathopulos
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-66936-4

A novel loss-of-function mutation of PBK associated with human kidney stone disease
Cited by: 3
Author(s): Choochai Nettuwakul, Nunghathai Sawasdee, Oranud Praditsap, Nanyawan Rungroj, Arnat Pasena, Thanyaporn Dechtawewat, Nipaporn Deejai, Suchai Sritippayawan, Santi Rojsatapong, Wipada Chaowagul, Pa‐thai Yenchitsomanus
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-65648-z

Rosmarinic Acid Exhibits Anticancer Effects via MARK4 Inhibition
Cited by: 102
Author(s): Saleha Anwar, Anas Shamsi, Mohd Shahbaaz, Aarfa Queen, Parvez Khan, Gulam Mustafa Hasan, Asimul Islam, Mohamed F. Alajmi, Afzal Hussain, Faizan Ahmad, Md. Imtaiyaz Hassan
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-67749-1

A candidate multi-epitope vaccine against SARS-CoV-2
Cited by: 184
Author(s): Tamalika Kar, Utkarsh Narsaria, Srijita Basak, Debashrito Deb, Filippo Castiglione, David M. Mueller, Anurag P. Srivastava
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-67415-6

Identification of the amino acid position controlling the different enzymatic activities in walnut tyrosinase isoenzymes (jrPPO1 and jrPPO2)
Cited by: 11
Author(s): Felix Panis, Annette Rompel
Software Mentions: 1
Published: over 4 years ago

10.1016/j.str.2020.05.010

Structural Basis for the Activation and Target Site Specificity of CDC7 Kinase
Cited by: 12
Author(s): Samual D. Dick, Stefania Federico, Simon Hughes, V.E. Pye, Nicola O’Reilly, Peter Cherepanov
Software Mentions: 1
Published: over 4 years ago

10.1016/j.str.2020.11.004

Dimeric Structure of the Pseudokinase IRAK3 Suggests an Allosteric Mechanism for Negative Regulation
Cited by: 18
Author(s): Sven M. Lange, Marina I. Nelen, Philip Cohen, Yogesh Kulathu
Software Mentions: 1
Published: almost 4 years ago

10.1186/1742-4682-10-15

Molecular docking between the RNA polymerase of the Moniliophthora perniciosa mitochondrial plasmid and Rifampicin produces a highly stable complex
Cited by: 2
Author(s): Bruno Silva Andrade, Catiane S. Souza, Aristóteles Góes-Neto
Software Mentions: 1
Published: almost 12 years ago

10.1186/1742-4682-10-25

Structural mimicry between SLA/LP and Rickettsia surface antigens as a driver of autoimmune hepatitis: insights from an in silico study
Cited by: 10
Author(s): Alessandro Paiardini, Stefano Pascarella
Software Mentions: 1
Published: almost 12 years ago

10.1186/1742-4682-10-46

Identification of novel modulators for ionotropic glutamate receptor, iGluA2 by in-silico screening
Cited by: 4
Author(s): Balasundaram Padmanabhan
Software Mentions: 1
Published: over 11 years ago

10.7150/thno.35919

Dengue and Zika Virus Domain III-Flagellin Fusion and Glycan-Masking E Antigen for Prime-Boost Immunization
Cited by: 13
Author(s): Hsiao‐Han Lin, Shao-Ping Yang, Meng‐Ju Tsai, Guan-Cheng Lin, Han‐Chung Wu, Suh-Chin Wu
Software Mentions: 1
Published: about 6 years ago

10.7150/thno.35210

Water-Soluble Phthalocyanines Selectively Bind to Albumin Dimers: A Green Approach Toward Enhancing Tumor-Targeted Photodynamic Therapy
Cited by: 29
Author(s): Xingshu Li, Ki‐Hun Jeong, Yoonji Lee, Tian Guo, Da-Young Lee, Jeong-Min Park, Nahyun Kwon, Jung-Hyun Na, Suc-Kyoung Hong, Sun Shin, Jian Huang, Sun Choi, Se-Hoon Kim, Juyoung Yoon
Software Mentions: 1
Published: about 6 years ago