10.3389/fmicb.2017.00048

Porphyromonas gingivalis Uses Specific Domain Rearrangements and Allelic Exchange to Generate Diversity in Surface Virulence Factors
Cited by: 37
Author(s): Stuart G. Dashper, Helen Mitchell, Christine A. Seers, Simon Gladman, Torsten Seemann, Dieter Bulach, P. Scott Chandry, Keith J. Cross, Steven M. Cleal, Eric C. Reynolds
Software Mentions: 3
Published: over 9 years ago

10.3389/fmicb.2018.03353

Structural and Phylogenetic Diversity of Anaerobic Carbon-Monoxide Dehydrogenases
Cited by: 35
Author(s): Masao Inoue, Issei Nakamoto, Kimiho Omae, Tatsuki Oguro, Hiroyuki Ogata, Takashi Yoshida, Yoshihiko Sako
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2020.582437

Role of BgaA as a Pneumococcal Virulence Factor Elucidated by Molecular Evolutionary Analysis
Cited by: 5
Author(s): M. Yamaguchi, Moe Takemura, Kõtarõ Higashi, Kana Goto, Yujiro Hirose, Tomoko Sumitomo, Masao Nakata, Narikazu Uzawa, Shigetada Kawabata
Software Mentions: 3
Published: almost 6 years ago

10.3389/fphar.2017.00393

Molecular Simulations of Carbohydrates with a Fucose-Binding Burkholderia ambifaria Lectin Suggest Modulation by Surface Residues Outside the Fucose-Binding Pocket
Cited by: 6
Author(s): Tamir Dingjan, Anne Imberty, Serge Pérez, Elizabeth Yuriev, Paul A. Ramsland
Software Mentions: 3
Published: about 9 years ago

10.1038/s41598-019-39984-8

Insights into the dynamic nature of the dsRNA-bound TLR3 complex
Cited by: 27
Author(s): Vijayakumar Gosu, Seung‐Woo Son, Donghyun Shin, Ki Duk Song
Software Mentions: 3
Published: over 7 years ago

10.1083/jcb.202005130

SUMOylation stabilizes sister kinetochore biorientation to allow timely anaphase
Cited by: 4
Author(s): Shaowu Xue, Menglu Wang, Claudia Schaffner, Olga O. Nerusheva, Dean Clift, Christos Spanos, David A. Kelly, Michael H. Tatham, Andreas U. Wallek, Yehui Wu, Juri Rappsilber, A. Arockia Jeyaprakash, Zuzana Storchová, Ronald T. Hay, Adèle L. Marston
Software Mentions: 3
Published: about 5 years ago

10.1186/s13068-020-01779-9

Removal of N-linked glycans in cellobiohydrolase Cel7A from Trichoderma reesei reveals higher activity and binding affinity on crystalline cellulose
Cited by: 14
Author(s): Bartłomiej M Kołaczkowski, Kay Schaller, Trine Holst Sørensen, Günther H.J. Peters, Kenneth Jensen, Kristian B. R. M. Krogh, Peter Westh
Software Mentions: 3
Published: almost 6 years ago

10.15252/embj.2021107985

Neutralization of SARS‐CoV‐2 by highly potent, hyperthermostable, and mutation‐tolerant nanobodies
Cited by: 56
Author(s): Thomas Güttler, Metin Aksu, Antje Dickmanns, Kim M. Stegmann, Kathrin Gregor, Renate Rees, Waltraud Taxer, Oleh Rymarenko, Jürgen Schünemann, Christian Dienemann, Philip Gunkel, Bianka Mußil, Jens Krull, Ulrike Teichmann, Uwe Groß, Volker C. Cordes, Matthias Dobbelstein, Dirk Görlich
Software Mentions: 3
Published: almost 5 years ago

10.1007/s00412-019-00700-0

The molecular basis of monopolin recruitment to the kinetochore
Cited by: 15
Author(s): Rebecca Plowman, Namit Singh, Eelco C. Tromer, Angel Payan, Eris Duro, Christos Spanos, Juri Rappsilber, Berend Snel, Geert J.P.L. Kops, K.D. Corbett, Adèle L. Marston
Software Mentions: 3
Published: about 7 years ago

10.3389/fmolb.2015.00056

A script to highlight hydrophobicity and charge on protein surfaces
Cited by: 83
Author(s): Dominique Hagemans, Ianthe A. E. M. van Belzen, Tania Morán Luengo, Stefan Rüdiger
Software Mentions: 2
Published: over 10 years ago

10.3389/fphar.2020.561834

Demystifying the Molecular Basis of Pyrazoloquinolinones Recognition at the Extracellular α1+/β3- Interface of the GABAA Receptor by Molecular Modeling
Cited by: 3
Author(s): Natesh Singh, Bruno O. Villoutreix
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmolb.2017.00068

Structure and Interactions of the TPR Domain of Sgt2 with Yeast Chaperones and Ybr137wp
Cited by: 18
Author(s): E. Krysztofinska, N.J. Evans, Arjun Thapaliya, James W. Murray, Rhodri M. L. Morgan, Santiago Martínez-Lumbreras, Rivka L. Isaacson
Software Mentions: 2
Published: over 8 years ago

10.1242/dmm.043307

Temperature sensitive SMA-causing point mutations lead to SMN instability, locomotor defects, and premature lethality in Drosophila
Cited by: 4
Author(s): Amanda C. Raimer, S. S. Singh, Maina R. Edula, Tamara Paris-Davila, Vasudha Vandadi, Ashlyn M. Spring, A. Gregory Matera
Software Mentions: 2
Published: over 6 years ago

10.1007/s10858-016-0029-x

Integrative NMR for biomolecular research
Cited by: 43
Author(s): Woonghee Lee, Gabriel Cornilescu, Hesam Dashti, Hamid R. Eghbalnia, Marco Tonelli, William M. Westler, Samuel E. Butcher, Katherine Henzler‐Wildman, John L. Markley
Software Mentions: 2
Published: over 10 years ago

10.3390/v12040387

The In Silico Prediction of Hotspot Residues that Contribute to the Structural Stability of Subunit Interfaces of a Picornavirus Capsid
Cited by: 2
Author(s): Nicole Upfold, Caroline Jane Ross, Özlem Tastan Bishop, Caroline Knox
Software Mentions: 2
Published: over 6 years ago

10.3389/fmolb.2020.00029

Molecular Simulation of Oncostatin M and Receptor (OSM–OSMR) Interaction as a Potential Therapeutic Target for Inflammatory Bowel Disease
Cited by: 19
Author(s): Qingqing Du, Qian Yan, Weiwei Xue
Software Mentions: 2
Published: over 6 years ago

10.1002/cmdc.202000237

Structure‐Based Macrocyclization of Substrate Analogue NS2B‐NS3 Protease Inhibitors of Zika, West Nile and Dengue viruses
Cited by: 28
Author(s): Niklas J Braun, Jun-Ping Quek, Simon Huber, Jenny Kouretova, Dorothee Rogge, Heike Lang‐Henkel, Ezekiel Ze Ken Cheong, Bing Liang Alvin Chew, A. Heine, Dahai Luo, Torsten Steinmetzer
Software Mentions: 2
Published: about 6 years ago

10.15252/embj.2019103234

Structural basis for centromere maintenance by <i>Drosophila</i> <scp>CENP</scp> ‐A chaperone <scp>CAL</scp> 1
Cited by: 27
Author(s): Bethan Medina‐Pritchard, Vasiliki Lazou, Juan Zou, Olwyn Byron, Maria Alba Abad, Juri Rappsilber, Patrick Heun, A. Arockia Jeyaprakash
Software Mentions: 2
Published: over 6 years ago

10.15252/embj.2019103889

Proteasomal degradation induced by DPP9‐mediated processing competes with mitochondrial protein import
Cited by: 21
Author(s): Yannik Finger, Markus Habich, Sarah Gerlich, Sophia Urbanczyk, Erik van de Logt, Julian Koch, Laura Schu, Kim Jasmin Lapacz, Muna Ali, Carmelina Petrungaro, Silja Lucia Salscheider, C. Pichlo, Ulrich Baumann, Dirk Mielenz, Jörn Dengjel, Bent Brachvogel, Kay Hofmann, Jan Riemer
Software Mentions: 2
Published: almost 6 years ago

10.15252/emmm.201911248

A high‐affinity, bivalent <scp>PDZ</scp> domain inhibitor complexes <scp>PICK</scp> 1 to alleviate neuropathic pain
Cited by: 16
Author(s): Nikolaj Riis Christensen, Marta De Luca, Michael Brett Lever, Mette Richner, Astrid B Hansen, Gith Noes-Holt, Kathrine L. Jensen, Mette Rathje, Dennis Bo Jensen, Simon Erlendsson, Christian R. O. Bartling, Ina Ammendrup-Johnsen, Sofie Pedersen, Michèle Schönauer, Klaus B. Nissen, Søren Roi Midtgaard, Kaare Teilum, Andreas T. Sørensen, Anders Bach, Kristian Strømgaard, Claire Francesca Meehan, Christian Bjerggaard Vægter, Ulrik Gether, Kenneth L. Madsen
Software Mentions: 2
Published: about 6 years ago

10.1186/s13068-016-0605-z

Structural and functional characterization of a highly stable endo-β-1,4-xylanase from Fusarium oxysporum and its development as an efficient immobilized biocatalyst
Cited by: 18
Author(s): Sara Gómez, Asia M. Payne, Martin Savko, Gavin C. Fox, William Shepard, Francisco Fernández, M. Cristina Vega
Software Mentions: 2
Published: almost 10 years ago

10.1002/mgg3.1235

A novel compound heterozygous missense mutation in <i>ASNS</i> broadens the spectrum of asparagine synthetase deficiency
Cited by: 5
Author(s): Chun Wang, Guiyuan He, Yakun Ge, Runjie Li, Zhenguo Li, Yongzhong Lin
Software Mentions: 2
Published: about 6 years ago

10.1172/JCI142823

An unbiased approach to defining bona fide cancer neoepitopes that elicit immune-mediated cancer rejection
Cited by: 16
Author(s): Cory A. Brennick, Mariam M. George, Marmar Moussa, Adam T. Hagymasi, Sahar Al Seesi, Tatiana Shcheglova, Ryan P Englander, Grant L.J. Keller, Jeremy L. Balsbaugh, Brian M. Baker, Andrea Schietinger, Ion Măndoiu, Pramod K. Srivastava
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-018-31808-5

Copper mediated amyloid-β binding to Transthyretin
Cited by: 24
Author(s): Lidia Ciccone, Carole Fruchart-Gaillard, Gilles Mourier, Martin Savko, Susanna Nencetti, Elisabetta Orlandini, Denis Servent, E.A. Stura, William Shepard
Software Mentions: 2
Published: almost 8 years ago

10.3390/biom10050789

MARK4 Inhibited by AChE Inhibitors, Donepezil and Rivastigmine Tartrate: Insights into Alzheimer’s Disease Therapy
Cited by: 66
Author(s): Anas Shamsi, Saleha Anwar, Taj Mohammad, Mohamed F. Alajmi, Afzal Hussain, Tabish Rehman, Gulam Mustafa Hasan, Asimul Islam, Md. Imtaiyaz Hassan
Software Mentions: 2
Published: about 6 years ago

10.1002/ece3.52

Regulatory versus coding signatures of natural selection in a candidate gene involved in the adaptive divergence of whitefish species pairs ( Coregonus spp.)
Cited by: 15
Author(s): Julie Jeukens, Louis Bernatchez
Software Mentions: 2
Published: over 14 years ago

10.1080/22221751.2020.1781551

Virus strain from a mild COVID-19 patient in Hangzhou represents a new trend in SARS-CoV-2 evolution potentially related to Furin cleavage site
Cited by: 40
Author(s): Xi Jin, Kangli Xu, Penglei Jiang, Jiangshan Lian, Shaorui Hao, Hang‐Ping Yao, Hongyu Jia, Yimin Zhang, Lin Zheng, Nuoheng zheng, Dong Chen, Jinmei Yao, Jianhua Hu, Gao J, Liang Wen, Jian Shen, Yue Ren, Guodong Yu, Xiaoyan Wang, Yingfeng Lu, Xiaopeng Yu, Liang Yu, Da‐Xiong Xiang, Nanping Wu, Xiangyun Lu, Linfang Cheng, Fumin Liu, Haibo Wu, Changzhong Jin, Xiaofeng Yang, Pengxu Qian, Yunqing Qiu, Jifang Sheng, Tingbo Liang, Lanjuan Li, Yida Yang
Software Mentions: 2
Published: over 6 years ago

10.3390/cells10051205

Regulation of the Phosphoinositide Code by Phosphorylation of Membrane Readers
Cited by: 6
Author(s): Troy A. Kervin, Michael Overduin
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-39301-3

Exploration of inositol 1,4,5-trisphosphate (IP3) regulated dynamics of N-terminal domain of IP3 receptor reveals early phase molecular events during receptor activation
Cited by: 7
Author(s): Aneesh Chandran, Xavier Chee, David L. Prole, Taufiq Rahman
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-41300-3

An engineered GH1 β-glucosidase displays enhanced glucose tolerance and increased sugar release from lignocellulosic materials
Cited by: 33
Author(s): Clelton A. Santos, M.A.B. Morais, Oliver M. Terrett, Jan J. Lyczakowski, L.M. Zanphorlin, Jaire A. Ferreira-Filho, C.C.C. Tonoli, Mário Tyago Murakami, Paul Dupree, Anete Pereira de Souza
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-021-89556-y

ATP hydrolysis and nucleotide exit enhance maltose translocation in the MalFGK2E importer
Cited by: 1
Author(s): Bárbara Abreu, Carlos Cruz, A. Sofia F. Oliveira, Cláudio M. Soares
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-41272-4

Conjugates of methylene blue with γ-carboline derivatives as new multifunctional agents for the treatment of neurodegenerative diseases
Cited by: 22
Author(s): С. О. Бачурин, Галина Ф. Махаева, E. F. Shevtsova, Natalia P. Boltneva, N. V. Kovaleva, Sofya V. Lushchekina, Е. В. Рудакова, L. G. Dubova, Daria V. Vinogradova, В. Б. Соколов, А. Yu. Aksinenko, Владимир Петрович Фисенко, Rudy J. Richardson, Gjumrakch Aliev
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-021-92687-x

Polyimide mesh-based sample holder with irregular crystal mounting holes for fixed-target serial crystallography
Cited by: 15
Author(s): Ki Hyun Nam, Jihan Kim, Yunje Cho
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-98391-0

Structure and stability of the designer protein WRAP-T and its permutants
Cited by: 1
Author(s): B. Mylemans, Xiao Yin Lee, I. Laier, Christine Helsen, Arnout Voet
Software Mentions: 2
Published: almost 5 years ago

10.1111/1462-2920.13036

Closing the gaps on the viral photosystem‐ <scp>I</scp> <i> psa <scp>DCAB</scp> </i> gene organization
Cited by: 7
Author(s): Sheila Roitman, José Flores‐Uribe, Alon Philosof, Ben Knowles, Forest Rohwer, J. Cesar Ignacio‐Espinoza, Matthew B. Sullivan, Francisco M. Cornejo‐Castillo, Pablo Sánchez, Silvia G. Acinas, Chris L. Dupont, Oded Béjà
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-019-39214-1

Deferiprone: Pan-selective Histone Lysine Demethylase Inhibition Activity and Structure Activity Relationship Study
Cited by: 20
Author(s): Verjine Khodaverdian, Subhasish Tapadar, Ian A. Macdonald, Yuan Xu, Po Y. Ho, Allison Bridges, Pragya Rajpurohit, Bhakti A. Sanghani, Yuhong Fan, Muthusamy Thangaraju, Nathaniel A. Hathaway, Adegboyega K. Oyelere
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-28692-4

Structural analyses of FERM domain-mediated membrane localization of FARP1
Cited by: 11
Author(s): Yi Chun Kuo, Xiaojing He, Andrew J. Coleman, Yu‐Ju Chen, Pranathi Dasari, Thomas Biederer, Xuewu Zhang
Software Mentions: 2
Published: almost 8 years ago

10.1111/j.1365-2958.2007.05785.x

An atypical receiver domain controls the dynamic polar localization of the Myxococcus xanthus social motility protein FrzS
Cited by: 32
Author(s): James S. Fraser, John P. Merlie, Nathaniel Echols, Shellie R. Weisfield, Tâm Mignot, David E. Wemmer, David R. Zusman, Tom Alber
Software Mentions: 2
Published: about 19 years ago

10.3390/molecules23010111

Characterization of Two VAO-Type Flavoprotein Oxidases from Myceliophthora thermophila
Cited by: 7
Author(s): Alessandro Ferrari, H.J. Rozeboom, Aniek S.C. Vugts, Martijn J. Koetsier, R.J. Floor, Marco W. Fraaije
Software Mentions: 2
Published: over 8 years ago

10.1155/2020/4863015

Uncovering the Mechanism of the Effects of <i>Pien-Tze-Huang</i> on Liver Cancer Using Network Pharmacology and Molecular Docking
Cited by: 5
Author(s): Shanghui Liu, Run Wang, Yan Lou, Jia Liu
Software Mentions: 2
Published: almost 6 years ago

10.1016/j.ejmech.2018.04.035

Aminobenzothiazole derivatives stabilize the thermolabile p53 cancer mutant Y220C and show anticancer activity in p53-Y220C cell lines
Cited by: 52
Author(s): Matthias G. J. Baud, Matthias R. Bauer, Lorena Verduci, Felix A. Dingler, Ketan Patel, Debmalya Roy, A.C. Joerger, Alan R. Fersht
Software Mentions: 2
Published: about 8 years ago

10.1016/j.str.2018.05.001

Structural Basis of Phosphatidic Acid Sensing by APH in Apicomplexan Parasites
Cited by: 22
Author(s): Nick Darvill, David Jean Dubois, Sarah L. Rouse, Pierre‐Mehdi Hammoudi, Thomas C. A. Blake, Stefi Benjamin, Bing Liu, Dominique Soldati‐Favre, Steve Matthews
Software Mentions: 2
Published: almost 8 years ago

10.3390/molecules19067008

Combination of 2D/3D Ligand-Based Similarity Search in Rapid Virtual Screening from Multimillion Compound Repositories. Selection and Biological Evaluation of Potential PDE4 and PDE5 Inhibitors
Cited by: 18
Author(s): Krisztina Dobi, István Hajdú, Beáta Flachner, Gabriella Fabó, Mária Szaszkó, Melinda Bognár, Csaba Magyar, István Simon, Dániel Szisz, Zsolt Lőrincz, Sándor Cseh, György Dormán
Software Mentions: 2
Published: about 12 years ago

10.1128/mBio.00760-20

Novel Immunoglobulin Domain Proteins Provide Insights into Evolution and Pathogenesis of SARS-CoV-2-Related Viruses
Cited by: 76
Author(s): Yan‐Xi Tan, Theresa Schneider, Matthew Leong, L. Aravind, David Zhang
Software Mentions: 2
Published: about 6 years ago

10.1063/1.5053466

Conformation-specific detection of calmodulin binding using the unnatural amino acid p-azido-phenylalanine (AzF) as an IR-sensor
Cited by: 10
Author(s): Anne Creon, Inokentijs Josts, Stephan Niebling, Nils Huse, Henning Tidow
Software Mentions: 2
Published: over 7 years ago

10.1128/mBio.00262-21

The Breadth and Molecular Basis of Hcp-Driven Type VI Secretion System Effector Delivery
Cited by: 15
Author(s): Sophie A. Howard, R. Christopher D. Furniss, Dora Bonini, Himani Amin, Patricia Paracuellos, David Zlotkin, Tiago Costa, Asaf Levy, Despoina A. I. Mavridou, Alain Filloux
Software Mentions: 2
Published: about 5 years ago

10.1002/humu.23777

Mutations in<i>ELAC2</i>associated with hypertrophic cardiomyopathy impair mitochondrial tRNA 3′‐end processing
Cited by: 27
Author(s): Makenzie Saoura, Christopher Powell, Robert Kopajtich, Ahmad Alahmad, Haya H. Al-Balool, Buthaina Albash, Majid Alfadhel, Charlotte L. Alston, Enrico Bertini, Penelope E. Bonnen, Drago Bratkovic, Rosalba Carrozzo, Maria Alice Donati, Michela Di Nottia, Daniele Ghezzi, Amy Goldstein, Eric Haan, Rita Horvath, Joanne Hughes, Federica Invernizzi, Eleonora Lamantea, Benjamin Lucas, Kyla‐Gaye Pinnock, Maria Pujantell, Shamima Rahman, Pedro Rebelo‐Guiomar, Saikat Santra, Daniela Verrigni, Robert McFarland, Holger Prokisch, Robert W. Taylor, Louis Levinger, Michal Minczuk
Software Mentions: 2
Published: about 7 years ago

10.1128/mBio.01011-21

Comparative Biofilm Assays Using Enterococcus faecalis OG1RF Identify New Determinants of Biofilm Formation
Cited by: 14
Author(s): Julia L. E. Willett, Jennifer L. Dale, Lucy M. Kwiatkowski, Jennifer Powers, Michelle L. Korir, Rhea Kohli, Aaron M. T. Barnes, Gary M. Dunny
Software Mentions: 2
Published: about 5 years ago

10.1155/2020/1062325

Pharmacological Network Reveals the Active Mechanism of Qi-Replenishing, Spleen-Strengthening, Phlegm-Dispelling, and Blood-Nourishing Fufang on Coronary Heart Disease
Cited by: 2
Author(s): Fan Zhang, Yue Liu, Sicheng Zheng, Boyi Dang, Jianan Wang, Zhe Zhang
Software Mentions: 2
Published: over 5 years ago

10.1107/S2052252515008969

Structural studies of P-type ATPase–ligand complexes using an X-ray free-electron laser
Cited by: 21
Author(s): Maike Bublitz, Karol Nass, N.D. Drachmann, Anders J. Markvardsen, Matthias J. Gutmann, Thomas R. M. Barends, D. Mattle, Robert L. Shoeman, R. Bruce Doak, Sébastien Boutet, Marc Messerschmidt, M. Seibert, Garth J. Williams, L. Foucar, Linda Reinhard, Oleg Sitsel, J.L. Gregersen, Johannes Clausen, Thomas Boesen, Kamil Gotfryd, Kaituo Wang, Claus Olesen, Jesper Møller, Poul Nissen, Ilme Schlichting
Software Mentions: 2
Published: about 11 years ago

10.1042/BSR20170001

Crystal structure of thermostable alkylsulfatase SdsAP from <i>Pseudomonas sp. S9</i>
Cited by: 3
Author(s): Lifang Sun, Pu Chen, Su Y, Zhixiong Cai, Lingwei Ruan, Xun Xu, Yunkun Wu
Software Mentions: 2
Published: about 9 years ago

10.1107/S2052252520001840

Structure of the MICU1–MICU2 heterodimer provides insights into the gatekeeping threshold shift
Cited by: 21
Author(s): Jongseo Park, Lee Young-Jin, Tae‐In Park, Jung Youn Kang, Sang A Mun, Minho Jin, Jamie O. Yang, Soo Hyun Eom
Software Mentions: 2
Published: over 6 years ago

10.1063/1.4948539

Structural dynamics of a methionine γ-lyase for calicheamicin biosynthesis: Rotation of the conserved tyrosine stacking with pyridoxal phosphate
Cited by: 4
Author(s): Heidi B. Cao, Kemin Tan, Fengbin Wang, L. Bigelow, Ragothaman M. Yennamalli, R. Jedrzejczak, G. Babnigg, C.A. Bingman, A. Joachimiak, Madan K. Kharel, Shanteri Singh, Jon S. Thorson, George N. Phillips
Software Mentions: 2
Published: about 10 years ago

10.1186/s13071-017-2523-8

Multidrug resistance-associated protein 4 is a bile transporter of Clonorchis sinensis simulated by in silico docking
Cited by: 7
Author(s): Fuhong Dai, Won Gi Yoo, Ji Yun Lee, Yao Lu, Jhang Ho Pak, Woon-Mok Sohn, Sung-Jong Hong
Software Mentions: 2
Published: over 8 years ago

10.1016/j.chom.2020.06.010

Neutralization of SARS-CoV-2 by Destruction of the Prefusion Spike
Cited by: 280
Author(s): Jiandong Huo, Yuguang Zhao, Jingshan Ren, Daming Zhou, Duyvesteyn Hme., H. Ginn, L. Carrique, Tomas Malinauskas, R.R. Ruza, Pranav N.M. Shah, Tiong Kit Tan, Pramila Rijal, Naomi Coombes, Kevin R. Bewley, Julia A. Tree, Julika Radecke, Neil G. Paterson, Piyasa Supasa, Juthathip Mongkolsapaya, Gavin Screaton, Miles W. Carroll, Alain Townsend, Elizabeth E. Fry, Raymond J. Owens, D.I. Stuart
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.63230

Optimized Vivid-derived Magnets photodimerizers for subcellular optogenetics in mammalian cells
Cited by: 31
Author(s): Lorena Benedetti, Jonathan S. Marvin, Hanieh Falahati, Andres Guillén-Samander, Loren L. Looger, Pietro De Camilli
Software Mentions: 2
Published: over 5 years ago

10.3390/ph11030067

Looking for Novel Capsid Protein Multimerization Inhibitors of Feline Immunodeficiency Virus
Cited by: 7
Author(s): Natalia Sierra, Christelle Folio, Xavier Robert, Mathieu Long, Christophe Guillon, Guzmán Álvarez
Software Mentions: 2
Published: almost 8 years ago

10.3390/nu11122961

The Potential Synergistic Modulation of AMPK by Lippia citriodora Compounds as a Target in Metabolic Disorders
Cited by: 14
Author(s): Mariló Olivares-Vicente, Noelia Sánchez‐Marzo, José Antonio Encinar, María de la Luz Cádiz-Gurrea, Jesús Lozano-Sánchez, Antonio Segura‐Carretero, David Arráez-Román, Catherine Riva, Enrique Barrajón‐Catalán, María Herranz-López, Vicente Micol
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.62117

Structural basis for transcription complex disruption by the Mfd translocase
Cited by: 31
Author(s): Jin Young Kang, Eliza Llewellyn, James Chen, Paul Dominic B. Olinares, Joshua Brewer, Brian T. Chait, Elizabeth A. Campbell, Seth A. Darst
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.51898

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon–anticodon pairing
Cited by: 25
Author(s): Eric D. Hoffer, Sung Il Hong, S. Sunita, Tatsuya Maehigashi, Ruben L Gonzalez, Paul C. Whitford, C.M. Dunham
Software Mentions: 2
Published: almost 6 years ago

10.1128/JVI.03065-15

A Dimerization-Dependent Mechanism Drives the Endoribonuclease Function of Porcine Reproductive and Respiratory Syndrome Virus nsp11
Cited by: 26
Author(s): Yuejun Shi, Youwen Li, Yingying Lei, Gang Ye, Zhou Shen, Limeng Sun, Rui Luo, Dan Wang, Zhen F. Fu, Shaobo Xiao, Guiqing Peng
Software Mentions: 2
Published: about 10 years ago

10.1128/JVI.00694-16

Crystal Structure of the Human Astrovirus Capsid Protein
Cited by: 32
Author(s): Yukimatsu Toh, Justin Harper, Kelly A. Dryden, Mark Yeager, Carlos F. Arias, Ernesto Méndez, Yizhi Jane Tao
Software Mentions: 2
Published: over 9 years ago

10.1128/JVI.02511-16

Structural Definition of Duck Major Histocompatibility Complex Class I Molecules That Might Explain Efficient Cytotoxic T Lymphocyte Immunity to Influenza A Virus
Cited by: 16
Author(s): Yanan Wu, Junya Wang, Shenggen Fan, Rong Chen, Yanjie Liu, Jianhua Zhang, Hongyu Yuan, Ruiying Liang, Nianzhi Zhang, Chun Xia
Software Mentions: 2
Published: almost 9 years ago

10.1128/JVI.00086-20

A Molecular Determinant of West Nile Virus Secretion and Morphology as a Target for Viral Attenuation
Cited by: 8
Author(s): Justine Basset, Julien Burlaud‐Gaillard, Maxence Feher, Philippe Roingeard, F.A. Rey, Nathalie Pardigon
Software Mentions: 2
Published: about 6 years ago

10.1107/S0909049513020803

High-resolution crystal structure of<i>Streptococcus pyogenes</i>β-NAD⁺glycohydrolase in complex with its endogenous inhibitor IFS reveals a highly water-rich interface
Cited by: 4
Author(s): Ji Young Yoon, Doo Ri An, Hye Jin Yoon, Hyoun Sook Kim, Sang Jae Lee, Ha Na Im, Jun Young Jang, Se Won Suh
Software Mentions: 2
Published: almost 13 years ago

10.1107/S1600577515002131

Identifying and quantifying radiation damage at the atomic level
Cited by: 48
Author(s): Markus Gerstel, Charlotte M. Deane, Elspeth F. Garman
Software Mentions: 2
Published: over 11 years ago

10.1007/s10969-015-9193-6

A SelB/EF-Tu/aIF2γ-like protein from Methanosarcina mazei in the GTP-bound form binds cysteinyl-tRNACys
Cited by: 1
Author(s): Takatoshi Yanagisawa, Ryohei Ishii, Yasushi Hikida, Ryuya Fukunaga, Toru Sengoku, S. Sekine, Shigeyuki Yokoyama
Software Mentions: 2
Published: over 11 years ago

10.1016/j.yjsbx.2020.100027

Molecular assemblies built with the artificial protein Pizza
Cited by: 8
Author(s): Jeroen P. M. Vrancken, Jana Aupič, Christine Addy, Roman Jerala, J.R.H. Tame, Arnout Voet
Software Mentions: 2
Published: over 6 years ago

10.1128/JVI.00723-19

GII.13/21 Noroviruses Recognize Glycans with a Terminal β-Galactose via an Unconventional Glycan Binding Site
Cited by: 7
Author(s): Cong Xu, Xiaoman Sun, Jianxun Qi, Han-Bo Li, Wengang Chai, Qing Zhang, Hong Wang, Xiangyu Kong, Jiao Song, Lili Pang, Miao Jin, Dan-di Li, Ming Tan, Zhaojun Duan
Software Mentions: 2
Published: almost 7 years ago

10.7717/peerj.4680

From in silico to in vitro: a trip to reveal flavonoid binding on the <i>Rattus norvegicus</i> Kir6.1 ATP-sensitive inward rectifier potassium channel
Cited by: 11
Author(s): Alfonso Trezza, Vittoria Cicaloni, Piera Porciatti, Andrea Langella, Fabio Fusi, Simona Saponara, Ottavia Spiga
Software Mentions: 2
Published: about 8 years ago

10.1128/JVI.01541-17

The Three-Fold Axis of the HIV-1 Capsid Lattice Is the Species-Specific Binding Interface for TRIM5α
Cited by: 20
Author(s): Damien Morger, Franziska Zosel, Martin Bühlmann, Sara Züger, Maximilian Mittelviefhaus, Benjamin Schuler, Jeremy Luban, Markus G. Grütter
Software Mentions: 2
Published: over 8 years ago

10.1128/JVI.00848-21

Structures of Substrate Complexes of Foamy Viral Protease-Reverse Transcriptase
Cited by: 2
Author(s): Martyna Nowacka, Elżbieta Nowak, Mariusz Czarnocki-Cieciura, Justyna Jackiewicz, Krzysztof Skowronek, Roman H. Szczepanowski, Birgitta M. Wöhrl, Marcin Nowotny
Software Mentions: 2
Published: almost 5 years ago

10.1155/2019/1046504

Peptides from Cauliflower By-Products, Obtained by an Efficient, Ecosustainable, and Semi-Industrial Method, Exert Protective Effects on Endothelial Function
Cited by: 17
Author(s): Cristiana Caliceti, Anna Laura Capriotti, Donato Calabria, Francesca Bonvicini, Riccardo Zenezini Chiozzi, Carmela Maria Montone, Susy Piovesana, Martina Zangheri, Mara Mirasoli, Patrizia Simoni, Aldo Laganà, Aldo Roda
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.42400

DNA translocation mechanism of an XPD family helicase
Cited by: 32
Author(s): Kaiying Cheng, Dale B. Wigley
Software Mentions: 2
Published: over 7 years ago

10.1016/j.yjsbx.2020.100030

Crystallographic and cryogenic electron microscopic structures and enzymatic characterization of sulfur oxygenase reductase from Sulfurisphaera tokodaii
Cited by: 3
Author(s): Yuta Sato, Takashi Yabuki, Naruhiko Adachi, Toshio Moriya, T. Arakawa, Masato Kawasaki, Chihaya Yamada, Toshiya Senda, Shinya Fushinobu, Takayoshi Wakagi
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.35677

Specific Eph receptor-cytoplasmic effector signaling mediated by SAM–SAM domain interactions
Cited by: 30
Author(s): Yue Wang, Yuan Shang, Jianchao Li, Weidi Chen, Gang Li, Jun Wan, Wei Liu, Mingjie Zhang
Software Mentions: 2
Published: about 8 years ago

10.1107/S1600577514026289

Radiation damage to nucleoprotein complexes in macromolecular crystallography
Cited by: 20
Author(s): C.S. Bury, Elspeth F. Garman, H. Ginn, Raimond B. G. Ravelli, Ian Carmichael, Geoff Kneale, J.E. McGeehan
Software Mentions: 2
Published: over 11 years ago

10.7554/eLife.46112

An engineered monomer binding-protein for α-synuclein efficiently inhibits the proliferation of amyloid fibrils
Cited by: 45
Author(s): Emil Dandanell Agerschou, Patrick Flagmeier, Theodora Saridaki, Céline Galvagnion, Daniel Komnig, Laetitia Heid, Vibha Prasad, Hamed Shaykhalishahi, Dieter Willbold, Christopher M. Dobson, Aaron Voigt, Bjoern Falkenburger, Wolfgang Hoyer, Alexander K. Buell
Software Mentions: 2
Published: almost 7 years ago

10.7554/eLife.39213

Cryo-EM structure of respiratory complex I at work
Cited by: 90
Author(s): Kristian Parey, Ulrich Brandt, Hao Xie, Deryck J. Mills, Karin Siegmund, Janet Vonck, Werner Kühlbrandt, Volker Zickermann
Software Mentions: 2
Published: almost 8 years ago

10.3389/fimmu.2020.02074

Computational Design of a Novel VLP-Based Vaccine for Hepatitis B Virus
Cited by: 11
Author(s): Saeed Mobini, Milad Chizari, Ladan Mafakher, Elmira Rismani, Elham Rismani
Software Mentions: 2
Published: almost 6 years ago

10.1107/S205225251900263X

High-viscosity injector-based pink-beam serial crystallography of microcrystals at a synchrotron radiation source
Cited by: 38
Author(s): José M. Martín-García, Liya Zhu, Derek Mendez, Ming-Yue Lee, Eugene Chun, Chufeng Li, Hao Hu, Ganesh Subramanian, David J. Kissick, Craig M. Ogata, Robert H. Henning, Andrii Ishchenko, Zachary Dobson, Shangji Zhang, Uwe Weierstall, John C. H. Spence, Petra Fromme, Nadia A. Zatsepin, Robert F. Fischetti, Vadim Cherezov, Wei Liu
Software Mentions: 2
Published: over 7 years ago

10.1107/S2052252519002926

Determination of the molecular basis for coprogen import by Gram-negative bacteria
Cited by: 16
Author(s): Rhys Grinter, Trevor Lithgow
Software Mentions: 2
Published: over 7 years ago

10.1107/S2052252518018274

A cytosine modification mechanism revealed by the structure of a ternary complex of deoxycytidylate hydroxymethylase from bacteriophage T4 with its cofactor and substrate
Cited by: 4
Author(s): Si Hoon Park, Se Won Suh, Hyun Kyu Song
Software Mentions: 2
Published: over 7 years ago

10.3390/molecules23071688

Theoretical Model of EphA2-Ephrin A1 Inhibition
Cited by: 4
Author(s): Wiktoria Jedwabny, Alessio Lodola, Edyta Dyguda-Kazimierowicz
Software Mentions: 2
Published: almost 8 years ago

10.1128/JVI.01560-20

Orsay Virus CP-δ Adopts a Novel β-Bracelet Structural Fold and Incorporates into Virions as a Head Fiber
Cited by: 0
Author(s): Yusong R. Guo, Yingying Fan, Ying Zhou, Miao Jin, Jim L. Zhang, Hongbing Jiang, Matthew V. Holt, Tao Wang, Nicolas L. Young, David Wang, Weiwei Zhong, Yizhi Jane Tao
Software Mentions: 2
Published: over 5 years ago

10.12688/wellcomeopenres.16078.2

Non-native fold of the putative VPS39 zinc finger domain
Cited by: 0
Author(s): Benjamin G Butt, Edward J. Scourfield, Stephen C. Graham
Software Mentions: 2
Published: almost 6 years ago

10.1186/1479-5876-10-35

Hyperglycemic conditions inhibit C3-mediated immunologic control of Staphylococcus aureus
Cited by: 37
Author(s): Pamela S. Hair, Charlene G. Echague, Reuben D. Rohn, Neel K. Krishna, Julius O. Nyalwidhe, Kenji M. Cunnion
Software Mentions: 2
Published: over 14 years ago

10.1016/j.celrep.2021.109292

Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B.1.1.7
Cited by: 343
Author(s): Bo Meng, Steven A Kemp, Guido Papa, Rawlings P. Datir, Isabella Ferreira, Sara Marelli, William T. Harvey, Spyros Lytras, Ahmed A. Mohamed, Giulia Gallo, Nazia Thakur, Dami Collier, Petra Mlčochová, Lidia M. Duncan, Alessandro M. Carabelli, Julia C. Kenyon, Andrew M. L. Lever, Anna De Marco, Christian Saliba, Katja Culap, Elisabetta Cameroni, Nicholas J Matheson, Luca Piccoli, Davide Corti, Leo C. James, David L. Robertson, Dalan Bailey, Ravindra Gupta
Software Mentions: 2
Published: about 5 years ago

10.1016/j.celrep.2018.05.046

Co-evolution of HIV Envelope and Apex-Targeting Neutralizing Antibody Lineage Provides Benchmarks for Vaccine Design
Cited by: 52
Author(s): Kimmo Rantalainen, Zachary T. Berndsen, Sasha Murrell, Liwei Cao, Oluwarotimi Omorodion, Jonathan L. Torres, Mengyu Wu, Jeffrey C. Umotoy, Jeffrey Copps, Pascal Poignard, Elise Landais, James C. Paulson, Ian A. Wilson, Andrew B. Ward
Software Mentions: 2
Published: about 8 years ago

10.1155/2013/487158

Metabonomics Combined with UPLC-MS Chemical Profile for Discovery of Antidepressant Ingredients of a Traditional Chinese Medicines Formula, Chaihu-Shu-Gan-San
Cited by: 10
Author(s): Hongmei Jia, Zhiheng Su, Wei Long, Yuetao Liu, Xing Chang, Hongwu Zhang, Gang Ding, Yun Feng, Duan Cai, Zhong‐Mei Zou
Software Mentions: 2
Published: over 13 years ago

10.1016/j.celrep.2016.06.022

Structural Insights into Arl1-Mediated Targeting of the Arf-GEF BIG1 to the trans-Golgi
Cited by: 25
Author(s): Antonio Galindo, Nicolas Soler, Stephen H. McLaughlin, Myeong-Hee Yu, Roger L. Williams, Sean Munro
Software Mentions: 2
Published: about 10 years ago

10.1016/j.str.2018.06.011

Structural Basis for the Acceleration of Procollagen Processing by Procollagen C-Proteinase Enhancer-1
Cited by: 27
Author(s): David Pulido, Urvashi Sharma, Sandrine Vadon-Le Goff, Sadaf-Ahmahni Hussain, Sarah Cordes, Natacha Mariano, Emmanuel Bettler, Catherine Moali, Nushin Aghajari, Erhard Hohenester, David J.S. Hulmes
Software Mentions: 2
Published: almost 8 years ago

10.1016/j.bpj.2021.01.012

Elucidation of interactions regulating conformational stability and dynamics of SARS-CoV-2 S-protein
Cited by: 49
Author(s): Takaharu Mori, Jaewoon Jung, Chigusa Kobayashi, Hisham Dokainish, Suyong Re, Yuji Sugita
Software Mentions: 2
Published: over 5 years ago

10.3390/molecules25194413

Computational Study of C-X-C Chemokine Receptor (CXCR)3 Binding with Its Natural Agonists Chemokine (C-X-C Motif) Ligand (CXCL)9, 10 and 11 and with Synthetic Antagonists: Insights of Receptor Activation towards Drug Design for Vitiligo
Cited by: 6
Author(s): Giovanny Aguilera-Durán, Antonio Romo-Mancillas
Software Mentions: 2
Published: almost 6 years ago

10.1155/2020/2396569

Systematically Exploring the Antitumor Mechanisms of Core Chinese Herbs on Hepatocellular Carcinoma: A Computational Study
Cited by: 4
Author(s): Zhulin Wu, Li He, Lianan Wang, Lisheng Peng
Software Mentions: 2
Published: almost 6 years ago

10.3390/v13081495

Crystal Structure of a Retroviral Polyprotein: Prototype Foamy Virus Protease-Reverse Transcriptase (PR-RT)
Cited by: 3
Author(s): Jerry Joe Ebow Kingsley Harrison, Steve Tuske, Kalyan Kumar Das, Francesc Xavier Ruiz, J.D. Bauman, Paul L. Boyer, Jeffrey J. DeStefano, Stephen H. Hughes, Eddy Arnold
Software Mentions: 2
Published: almost 5 years ago

10.3390/v13071415

Acetylation, Methylation and Allysine Modification Profile of Viral and Host Proteins during Influenza A Virus Infection
Cited by: 8
Author(s): Farjana Ahmed, Torsten Kleffmann, Matloob Husain
Software Mentions: 2
Published: almost 5 years ago

10.1126/scisignal.abe1202

High-resolution structures of the SARS-CoV-2 2′- <i>O</i> -methyltransferase reveal strategies for structure-based inhibitor design
Cited by: 132
Author(s): Mónica Rosas‐Lemus, G. Minasov, L. Shuvalova, Nicole L. Inniss, O. Kiryukhina, J.S. Brunzelle, K.J.F. Satchell
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41431-020-00728-2

NAA10 p.(N101K) disrupts N-terminal acetyltransferase complex NatA and is associated with developmental delay and hemihypertrophy
Cited by: 6
Author(s): Nina McTiernan, Harinder Gill, Carlos E. Prada, Harry Pachajoa, Juliana Lores, Causes Study, Thomas Arnesen
Software Mentions: 2
Published: almost 6 years ago

10.3390/cells9040911

Targeted PARP Inhibition Combined with FGFR1 Blockade is Synthetically Lethal to Malignant Cells in Patients with Pancreatic Cancer
Cited by: 6
Author(s): Shiue‐Wei Lai, Oluwaseun Adebayo Bamodu, Jia Hong Chen, Alexander T.H. Wu, Wei Hwa Lee, Tsu Yi Chao, Chi Tai Yeh
Software Mentions: 2
Published: about 6 years ago