10.1371/journal.pbio.3000654

Cryo-EM structures of the human PA200 and PA200-20S complex reveal regulation of proteasome gate opening and two PA200 apertures
Cited by: 22
Author(s): Hongxin Guan, Youwang Wang, Ting Yu, Yini Huang, Mianhuan Li, Abdullah F. U. H. Saeed, Vanja Perčulija, Daliang Li, Jia Xiao, Dongmei Wang, Ping Zhu, Songying Ouyang
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2021.620472

Case Report: Novel RPGRIP1L Gene Mutations Identified by Whole Exome Sequencing in a Patient With Multiple Primary Tumors
Cited by: 0
Author(s): Jianghong Guo, Yu Ye, Zhuqing Ji, Ming Yao, Xiaotian Xia, Xiaofeng Sha, Ming‐De Huang
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms221910493

Discovery and Validation of Lmj_04_BRCT Domain, a Novel Therapeutic Target: Identification of Candidate Drugs for Leishmaniasis
Cited by: 6
Author(s): José Peña-Guerrero, Celia Fernández-Rubio, Aroia Burguete-Mikeo, Rima El-Dirany, Alfonso T. García-Sosa, Paul A. Nguewa
Software Mentions: 3
Published: almost 5 years ago

10.3390/md16100386

Kororamides, Convolutamines, and Indole Derivatives as Possible Tau and Dual-Specificity Kinase Inhibitors for Alzheimer’s Disease: A Computational Study
Cited by: 25
Author(s): Laura Llorach-Parés, Alfons Nonell-Canals, Conxita Àvila, Melchor Sánchez-Martínez
Software Mentions: 3
Published: almost 8 years ago

10.3390/ijms17060897

Functional Characterization of Soybean Glyma04g39610 as a Brassinosteroid Receptor Gene and Evolutionary Analysis of Soybean Brassinosteroid Receptors
Cited by: 16
Author(s): Suna Peng, Peng Tao, Feng Xu, Aiping Wu, Weige Huo, Jinxiang Wang
Software Mentions: 3
Published: about 10 years ago

10.3390/biom10050744

Structure–Activity Relationship Study Reveals the Molecular Basis for Specific Sensing of Hydrophobic Amino Acids by the Campylobacter jejuni Chemoreceptor Tlp3
Cited by: 13
Author(s): Mohammad Firoz Khan, Mayra A. Machuca, Mohammad Mizanur Rahman, Cengiz Koç, Raymond S. Norton, Brian J. Smith, Anna Roujeinikova
Software Mentions: 3
Published: over 6 years ago

10.7554/eLife.28842

Cyclic di-GMP differentially tunes a bacterial flagellar motor through a novel class of CheY-like regulators
Cited by: 59
Author(s): Jutta Nesper, Isabelle Hug, Setsu Kato, Chee-Seng Hee, Judith Habazettl, Pablo Manfredi, Stephan Grzesiek, Tilman Schirmer, Thierry Emonet, Urs Jenal
Software Mentions: 3
Published: almost 9 years ago

10.1107/S205225251700570X

Serial millisecond crystallography of membrane and soluble protein microcrystals using synchrotron radiation
Cited by: 123
Author(s): José M. Martín-García, Chelsie E. Conrad, Garrett Nelson, Natasha Stander, Nadia A. Zatsepin, James Zook, Liya Zhu, James H. Geiger, Eugene Chun, David J. Kissick, Mark Hilgart, Craig M. Ogata, Andrii Ishchenko, Nirupa Nagaratnam, Shatabdi Roy-Chowdhury, Jesse Coe, Ganesh Subramanian, Alexander F. Schäffer, Daniel James, Gihan Ketwala, Nagarajan Venugopalan, Shenglan Xu, Stephen Corcoran, D.R. Ferguson, Uwe Weierstall, John C. H. Spence, Vadim Cherezov, Petra Fromme, Robert F. Fischetti, Wei Liu
Software Mentions: 3
Published: about 9 years ago

10.1107/S2052252519007668

Structures of three ependymin-related proteins suggest their function as a hydrophobic molecule binder
Cited by: 10
Author(s): Jeong Kuk Park, Keon Young Kim, Yeo Won Sim, Young Dong Kim, Jin Kyun Kim, Cheol Lee, Jeongran Han, Chae Un Kim, J. Eugene Lee, SangYoun Park
Software Mentions: 3
Published: about 7 years ago

10.1016/j.immuni.2020.02.014

Butyrophilin-2A1 Directly Binds Germline-Encoded Regions of the Vγ9Vδ2 TCR and Is Essential for Phosphoantigen Sensing
Cited by: 144
Author(s): Mohindar Murugesh Karunakaran, Carrie R. Willcox, Mahboob Salim, Daniel Paletta, Alina Suzann Fichtner, Angela Noll, Lisa Starick, Anna Nöhren, Charlotte R Begley, Katie A Berwick, Raphaël A. G. Chaleil, Vincent Pitard, Julie Déchanet‐Merville, Paul A. Bates, Brigitte Kimmel, Timothy J. Knowles, Volker Kunzmann, Lutz Walter, Mark Jeeves, Fiyaz Mohammed, Benjamin E. Willcox, Thomas Herrmann
Software Mentions: 2
Published: over 6 years ago

10.1172/jci.insight.135459

Intrahepatic heteropolymerization of M and Z alpha-1-antitrypsin
Cited by: 13
Author(s): Mattia Laffranchi, Emma Elliston, Elena Miranda, Juan Pérez, Riccardo Ronzoni, Alistair M. Jagger, Nina Heyer-Chauhan, Mark Brantly, Annamaria Fra, David A. Lomas, James A. Irving
Software Mentions: 2
Published: about 6 years ago

10.1186/s40203-015-0014-1

Molecular docking studies on InhA, MabA and PanK enzymes from Mycobacterium tuberculosis of ellagic acid derivatives from Ludwigia adscendens and Trewia nudiflora
Cited by: 13
Author(s): Jamil A. Shilpi, Mohammad Tuhin Ali, Sanjib Saha, Shihab Hasan, Alexander I. Gray, Véronique Seidel
Software Mentions: 2
Published: over 10 years ago

10.1074/jbc.M113.480657

Ca2+-dependent Structural Changes in the B-cell Receptor CD23 Increase Its Affinity for Human Immunoglobulin E
Cited by: 27
Author(s): Daopeng Yuan, Anthony H. Keeble, Richard G. Hibbert, Stella M. Fabiane, Hannah J. Gould, James M. McDonnell, Andrew J. Beavil, Brian J. Sutton, B. Dhaliwal
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0196751

Assigning crystallographic electron densities with free energy calculations—The case of the fluoride channel Fluc
Cited by: 2
Author(s): Igor Ariz-Extreme, Jochen S. Hub
Software Mentions: 2
Published: over 8 years ago

10.3390/biom11070935

The Role of Cholesterol in Amyloidogenic Substrate Binding to the γ-Secretase Complex
Cited by: 4
Author(s): Urszula Orzeł, Jakub Jakowiecki, Krzysztof Młynarczyk, Sławomir Filipek
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.ppat.1009393

ADAM17 is an essential attachment factor for classical swine fever virus
Cited by: 10
Author(s): Fei Yuan, Dandan Li, Changyao Li, Yanan Zhang, Hao Song, Suhua Li, Hongkui Deng, George F. Gao, Ai Zheng
Software Mentions: 2
Published: over 5 years ago

10.1073/pnas.1901318116

Structure of KAP1 tripartite motif identifies molecular interfaces required for retroelement silencing
Cited by: 53
Author(s): Guido A. Stoll, Shun-ichiro Oda, Zheng-Shan Chong, Myeong-Hee Yu, Stephen H. McLaughlin, Yorgo Modis
Software Mentions: 2
Published: about 7 years ago

10.1007/s13238-014-0038-z

Elimination of inter-domain interactions increases the cleavage fidelity of the restriction endonuclease DraIII
Cited by: 4
Author(s): Wei Zhuo, Xuhui Lai, Liqing Zhang, Siu-Hong Chan, Fengjuan Li, Zhenyu Zhu, Maojun Yang, Dapeng Sun
Software Mentions: 2
Published: over 12 years ago

10.1073/pnas.2008176117

Genomic determinants of pathogenicity in SARS-CoV-2 and other human coronaviruses
Cited by: 184
Author(s): Ayal B. Gussow, Noam Auslander, Guilhem Faure, Yuri I. Wolf, Feng Zhang, Eugene V. Koonin
Software Mentions: 2
Published: about 6 years ago

10.26508/lsa.202000873

A conserved PI(4,5)P2–binding domain is critical for immune regulatory function of DOCK8
Cited by: 8
Author(s): Tetsuya Sakurai, Mutsuko Kukimoto-Niino, Kazufumi Kunimura, Nana Yamane, Daiji Sakata, Ryosuke Aihara, Tomoharu Yasuda, Shigeyuki Yokoyama, Mikako Shirouzu, Yoshihiro Fukui, Takehito Uruno
Software Mentions: 2
Published: over 5 years ago

10.3390/biom10091239

N-Terminal Segment of TvCyP2 Cyclophilin from Trichomonas vaginalis Is Involved in Self-Association, Membrane Interaction, and Subcellular Localization
Cited by: 2
Author(s): Sarita Aryal, Heng-Ming Hsu, Yuan‐Chao Lou, Chien-Hsin Chu, Jung-Hsiang Tai, Chun‐Hua Hsu, Chinpan Chen
Software Mentions: 2
Published: almost 6 years ago

10.1002/prot.26018

<scp>PDB‐tools</scp> web: A user‐friendly interface for the manipulation of <scp>PDB</scp> files
Cited by: 12
Author(s): Brian Jiménez‐García, João M.C. Teixeira, Mikaël Trellet, João P. G. L. M. Rodrigues, Alexandre M. J. J. Bonvin
Software Mentions: 2
Published: almost 6 years ago

10.1002/pro.3628

Function and solution structure of the <scp> <i>Arabidopsis thaliana</i> </scp> RALF8 peptide
Cited by: 10
Author(s): Ronnie O. Frederick, Miyoshi Haruta, Marco Tonelli, Woonghee Lee, Gabriel Cornilescu, Claudia C. Cornilescu, Michael R. Sussman, John L. Markley
Software Mentions: 2
Published: over 7 years ago

10.1007/s13238-015-0163-3

Insight into the Ebola virus nucleocapsid assembly mechanism: crystal structure of Ebola virus nucleoprotein core domain at 1.8 Å resolution
Cited by: 61
Author(s): Shishang Dong, Peng Yang, Guo‐Bang Li, Baocheng Liu, Wenming Wang, Xiang Liu, Xia Bo-ran, Cheng Yang, Zhiyong Lou, Yu Guo, Zihe Rao
Software Mentions: 2
Published: over 11 years ago

10.3390/molecules23071688

Theoretical Model of EphA2-Ephrin A1 Inhibition
Cited by: 4
Author(s): Wiktoria Jedwabny, Alessio Lodola, Edyta Dyguda-Kazimierowicz
Software Mentions: 2
Published: about 8 years ago

10.3390/biom11020160

Computational Insights into the Potential of Withaferin-A, Withanone and Caffeic Acid Phenethyl Ester for Treatment of Aberrant-EGFR Driven Lung Cancers
Cited by: 12
Author(s): Vidhi Malik, Vipul Kumar, Sunil C. Kaul, Renu Wadhwa, Durai Sundar
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0022337

The Crystal Structure of the Human Co-Chaperone P58IPK
Cited by: 19
Author(s): Maria Svärd, Ekaterina Biterova, Jean-Marie Bourhis, Jodie E. Guy
Software Mentions: 2
Published: about 15 years ago

10.1098/rsob.150128

Influence of DNA methylation on positioning and DNA flexibility of nucleosomes with pericentric satellite DNA
Cited by: 22
Author(s): Akihisa Osakabe, Fumiya Adachi, Yasuhiro Arimura, Kazuhira Maehara, Yasuyuki Ohkawa, Hitoshi Kurumizaka
Software Mentions: 2
Published: almost 11 years ago

10.4172/jpb.1000419

A Template-Based Protein Structure Reconstruction Method Using Deep Autoencoder Learning
Cited by: 9
Author(s): Haiou Li
Software Mentions: 2
Published: over 10 years ago

10.1098/rsob.160090

Structural and biochemical analyses of monoubiquitinated human histones H2B and H4
Cited by: 32
Author(s): Shuichi Machida, Satoshi Sekine, Yuka Nishiyama, Naoki Horikoshi, Hitoshi Kurumizaka
Software Mentions: 2
Published: about 10 years ago

10.1038/srep40254

Crystal Structure of StnA for the Biosynthesis of Antitumor Drug Streptonigrin Reveals a Unique Substrate Binding Mode
Cited by: 5
Author(s): Tianle Qian, Jing Wo, Yan Zhang, Quanwei Song, Guoqiang Feng, Ray Luo, Shuangjin Lin, Geng Wu, Haifeng Chen
Software Mentions: 2
Published: over 9 years ago

10.18632/oncotarget.21652

Structural basis of the therapeutic anti-PD-L1 antibody atezolizumab
Cited by: 54
Author(s): Fei Zhang, Xiaoqiang Qi, Xiaoxiao Wang, Diyang Wei, Jiawei Wu, Lingling Feng, Haiyan Cai, Yugang Wang, Naiyan Zeng, Ting Xu, Aiwu Zhou, Ying Zheng
Software Mentions: 2
Published: almost 9 years ago

10.18632/oncotarget.14248

Mutations acquired by hepatocellular carcinoma recurrence give rise to an aggressive phenotype
Cited by: 12
Author(s): Ji-Hye Choi, Min Jae Kim, Yong Keun Park, Jong-Yeop Im, So Mee Kwon, Hyung Chul Kim, Hyun Goo Woo, Hee-Jung Wang
Software Mentions: 2
Published: over 9 years ago

10.18632/oncotarget.24305

Unbiased compound-protein interface mapping and prediction of chemoresistance loci through forward genetics in haploid stem cells
Cited by: 15
Author(s): Moritz Horn, Virginia Kroef, Kira Allmeroth, Nicole Schuller, Stephan Miethe, Martin Peifer, Josef Penninger, Ulrich Elling, Martin S. Denzel
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms221910640

Trop2 Forms a Stable Dimer with Significant Structural Differences within the Membrane-Distal Region as Compared to EpCAM
Cited by: 10
Author(s): Miha Pavšič
Software Mentions: 2
Published: almost 5 years ago

10.3390/biom11010043

On the Mechanism of Bioinspired Formation of Inorganic Oxides: Structural Evidence of the Electrostatic Nature of the Interaction between a Mononuclear Inorganic Precursor and Lysozyme
Cited by: 3
Author(s): Lucia Gigli, Enrico Ravera, V. Calderone, Claudio Luchinat
Software Mentions: 2
Published: over 5 years ago

10.3390/biom10040660

Structure of the ALS Mutation Target Annexin A11 Reveals a Stabilising N-Terminal Segment
Cited by: 8
Author(s): Peder August Gudmundsen Lillebostad, Arne Raasakka, Silje Hjellbrekke, Sudarshan Patil, Trude Røstbø, Hanne Hollås, Siri Aastedatter Sakya, Peter D. Szigetvari, Anni Vedeler, Petri Kursula
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms22189771

Insights into Comparative Modeling of VHH Domains
Cited by: 3
Author(s): Akhila Melarkode Vattekatte, Fréderic Cadet, Jean‐Christophe Gelly, Alexandre G. de Brevern
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms221910862

Loops around the Heme Pocket Have a Critical Role in the Function and Stability of BsDyP from Bacillus subtilis
Cited by: 7
Author(s): Carolina Rodrigues, Patrícia T. Borges, Magalí F. Scocozza, Diogo Silva, André Taborda, Vânia Brissos, Carlos Frazão, Lı́gia O. Martins
Software Mentions: 2
Published: almost 5 years ago

10.1098/rsos.200844

Targeting the glycan of receptor binding domain with jacalin as a novel approach to develop a treatment against COVID-19
Cited by: 3
Author(s): Senthilnathan Rajendaran, Arunchalam Jothi, Anbazhagan Veerappan
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms22147341

Protein–Protein Docking with Large-Scale Backbone Flexibility Using Coarse-Grained Monte-Carlo Simulations
Cited by: 5
Author(s): Mateusz Kurciński, Sebastian Kmiecik, M. Zalewski, Andrzej Koliński
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms18071336

Quinolin-6-Yloxyacetamides Are Microtubule Destabilizing Agents That Bind to the Colchicine Site of Tubulin
Cited by: 9
Author(s): Ashwani Sharma, Gonzalo Sáez-Calvo, Natacha Olieric, Francisco de Asís Balaguer, Isabel Barasoaín, Clemens Lamberth, J. Fernando Díaz, Michel O. Steinmetz
Software Mentions: 2
Published: about 9 years ago

10.3390/ijms22157934

Simulations of Promising Indolizidine—α6-β2 Nicotinic Acetylcholine Receptor Complexes
Cited by: 1
Author(s): Francis A. Acquah, Matthew Paramel, Adama Kuta, Syed R. Hussaini, David R. Wallace, Blaine H. M. Mooers
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms16059354

A Moonlighting Human Protein Is Involved in Mitochondrial Import of tRNA
Cited by: 19
Author(s): Maria V. Baleva, Gowher Ali, Piotr Kamenski, Ivan Tarassov, Nina Entelis, Benoı̂t Masquida
Software Mentions: 2
Published: over 11 years ago

10.7554/eLife.62117

Structural basis for transcription complex disruption by the Mfd translocase
Cited by: 31
Author(s): Jin Young Kang, Eliza Llewellyn, James Chen, Paul Dominic B. Olinares, Joshua Brewer, Brian T. Chait, Elizabeth A. Campbell, Seth A. Darst
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.03648

The membrane-associated proteins FCHo and SGIP are allosteric activators of the AP2 clathrin adaptor complex
Cited by: 67
Author(s): Gunther Hollopeter, Jeffrey J. Lange, Ying Zhang, Thien N Vu, Mingyu Gu, Michael Ailion, Eric J. Lambie, Brian D. Slaughter, Jay R. Unruh, Laurence Florens, Erik M. Jørgensen
Software Mentions: 2
Published: almost 12 years ago

10.3390/ijms16059654

Structural Basis for Carbapenem-Hydrolyzing Mechanisms of Carbapenemases Conferring Antibiotic Resistance
Cited by: 121
Author(s): Jeong Ho Jeon, Jung Hun Lee, Jae Jin Lee, Kwang Seung Park, Asad Mustafa Karim, Chang Ro Lee, Byeong Chul Jeong, Sangeun Lee
Software Mentions: 2
Published: over 11 years ago

10.7554/eLife.48822

Crystal structure of dopamine receptor D4 bound to the subtype selective ligand, L745870
Cited by: 19
Author(s): Ye Zhou, Chuanai Cao, Lingli He, Xianping Wang, Xuejun C. Zhang
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.57127

Structure of substrate-bound SMG1-8-9 kinase complex reveals molecular basis for phosphorylation specificity
Cited by: 20
Author(s): L.M. Langer, Yair Gat, Fabien Bonneau, Elena Conti
Software Mentions: 2
Published: about 6 years ago

10.7554/eLife.22709

Chlamydia interfere with an interaction between the mannose-6-phosphate receptor and sorting nexins to counteract host restriction
Cited by: 58
Author(s): Cherilyn A. Elwell, Nadine Czudnochowski, John Von Dollen, Jeffrey R. Johnson, Rachel Nakagawa, Kathleen M. Mirrashidi, Nevan J. Krogan, Joanne N. Engel, Oren S. Rosenberg
Software Mentions: 2
Published: over 9 years ago

10.7554/eLife.41124

Structures in multiple conformations reveal distinct transition metal and proton pathways in an Nramp transporter
Cited by: 45
Author(s): Aaron T. Bozzi, Christina M. Zimanyi, John M. Nicoludis, Brandon K Lee, Casey H Zhang, Rachelle Gaudet
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.46986

Cryo-EM structures and functional characterization of murine Slc26a9 reveal mechanism of uncoupled chloride transport
Cited by: 83
Author(s): Justin D. Walter, Marta Sawicka, Raimund Dutzler
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.39213

Cryo-EM structure of respiratory complex I at work
Cited by: 90
Author(s): Kristian Parey, Ulrich Brandt, Hao Xie, Deryck J. Mills, Karin Siegmund, Janet Vonck, Werner Kühlbrandt, Volker Zickermann
Software Mentions: 2
Published: almost 8 years ago

10.7554/eLife.63230

Optimized Vivid-derived Magnets photodimerizers for subcellular optogenetics in mammalian cells
Cited by: 31
Author(s): Lorena Benedetti, Jonathan S. Marvin, Hanieh Falahati, Andres Guillén-Samander, Loren L. Looger, Pietro De Camilli
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms22168581

Targeting Lipocalin-2 in Inflammatory Breast Cancer Cells with Small Interference RNA and Small Molecule Inhibitors
Cited by: 8
Author(s): Ginette S Santiago-Sánchez, Ricardo Noriega-Rivera, Eliud Hernandez O'Farril, Fatma Valiyeva, Blanca I Quiñones-Díaz, Emilly Schlee Villodre, Bisrat G. Debeb, Andrea Rosado-Albacarys, Pablo E. Vivas‐Mejía
Software Mentions: 2
Published: about 5 years ago

10.1107/S2052252521003729

Putative hexameric glycosyltransferase functional unit revealed by the crystal structure of <i>Acinetobacter baumannii</i> MurG
Cited by: 1
Author(s): Kyoung Ho Jung, Sunghoon Kwon, Chang Min Kim, Jun Hyuck Lee, Hyun Ho Park
Software Mentions: 2
Published: over 5 years ago

10.1107/S2052252515008969

Structural studies of P-type ATPase–ligand complexes using an X-ray free-electron laser
Cited by: 21
Author(s): Maike Bublitz, Karol Nass, N.D. Drachmann, Anders J. Markvardsen, Matthias J. Gutmann, Thomas R. M. Barends, D. Mattle, Robert L. Shoeman, R. Bruce Doak, Sébastien Boutet, Marc Messerschmidt, M. Seibert, Garth J. Williams, L. Foucar, Linda Reinhard, Oleg Sitsel, J.L. Gregersen, Johannes Clausen, Thomas Boesen, Kamil Gotfryd, Kaituo Wang, Claus Olesen, Jesper Møller, Poul Nissen, Ilme Schlichting
Software Mentions: 2
Published: about 11 years ago

10.7554/eLife.57870

High-resolution structures of multiple 5-HT3AR-setron complexes reveal a novel mechanism of competitive inhibition
Cited by: 26
Author(s): Sandip Basak, Arvind Kumar, Steven Ramsey, Eric Gibbs, Anoop Kapoor, Marta Filizola, Sudha Chakrapani
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.56236

HA stabilization promotes replication and transmission of swine H1N1 gamma influenza viruses in ferrets
Cited by: 15
Author(s): Meng Hu, Guohua Yang, Jennifer DeBeauchamp, Jeri Carol Crumpton, Hyunsuh Kim, Lei Li, Xiu‐Feng Wan, Lisa Kercher, Andrew S. Bowman, Robert G. Webster, Richard J. Webby, Charles J. Russell
Software Mentions: 2
Published: about 6 years ago

10.7554/eLife.46112

An engineered monomer binding-protein for α-synuclein efficiently inhibits the proliferation of amyloid fibrils
Cited by: 45
Author(s): Emil Dandanell Agerschou, Patrick Flagmeier, Theodora Saridaki, Céline Galvagnion, Daniel Komnig, Laetitia Heid, Vibha Prasad, Hamed Shaykhalishahi, Dieter Willbold, Christopher M. Dobson, Aaron Voigt, Bjoern Falkenburger, Wolfgang Hoyer, Alexander K. Buell
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.68579

Live-cell single-molecule tracking highlights requirements for stable Smc5/6 chromatin association in vivo
Cited by: 18
Author(s): Thomas J. Etheridge, Desirée Villahermosa, Eduard Campillo-Funollet, Alex Herbert, Anja Irmisch, Adam T. Watson, Hung Quang Dang, Mark Osborne, Antony W. Oliver, Johanne M. Murray
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.51898

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon–anticodon pairing
Cited by: 25
Author(s): Eric D. Hoffer, Sung Il Hong, S. Sunita, Tatsuya Maehigashi, Ruben L Gonzalez, Paul C. Whitford, C.M. Dunham
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.22311

Structural basis for the hijacking of endosomal sorting nexin proteins by Chlamydia trachomatis
Cited by: 53
Author(s): Blessy Paul, Hyunsung Kim, Markus C. Kerr, Wilhelmina M. Huston, Rohan D. Teasdale, Brett M. Collins
Software Mentions: 2
Published: over 9 years ago

10.7554/eLife.35677

Specific Eph receptor-cytoplasmic effector signaling mediated by SAM–SAM domain interactions
Cited by: 30
Author(s): Yue Wang, Yuan Shang, Jianchao Li, Weidi Chen, Gang Li, Jun Wan, Wei Liu, Mingjie Zhang
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.43630

Importin-9 wraps around the H2A-H2B core to act as nuclear importer and histone chaperone
Cited by: 40
Author(s): Abhilash Padavannil, Prithwijit Sarkar, Seung Joong Kim, Tolga Çağatay, Jenny Jiou, Chad A. Brautigam, Diana R. Tomchick, Andrej Šali, Sheena D’Arcy, Yuh Min Chook
Software Mentions: 2
Published: over 7 years ago

10.1107/S205225251900263X

High-viscosity injector-based pink-beam serial crystallography of microcrystals at a synchrotron radiation source
Cited by: 38
Author(s): José M. Martín-García, Liya Zhu, Derek Mendez, Ming-Yue Lee, Eugene Chun, Chufeng Li, Hao Hu, Ganesh Subramanian, David J. Kissick, Craig M. Ogata, Robert H. Henning, Andrii Ishchenko, Zachary Dobson, Shangji Zhang, Uwe Weierstall, John C. H. Spence, Petra Fromme, Nadia A. Zatsepin, Robert F. Fischetti, Vadim Cherezov, Wei Liu
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.21510

Structural insights into the mechanism of the DEAH-box RNA helicase Prp43
Cited by: 75
Author(s): M.J. Tauchert, Jean‐Baptiste Fourmann, Reinhard Lührmann, Ralf Ficner
Software Mentions: 2
Published: over 9 years ago

10.7554/eLife.57887

The architecture of EMC reveals a path for membrane protein insertion
Cited by: 72
Author(s): John P. O’Donnell, Ben P. Phillips, Yuichi Yagita, Szymon Juszkiewicz, Armin Wagner, Duccio Malinverni, Robert J. Keenan, Elizabeth A. Miller, Ramanujan S. Hegde
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms14011788

Modeling of Anopheles minimus Mosquito NADPH-Cytochrome P450 Oxidoreductase (CYPOR) and Mutagenesis Analysis
Cited by: 8
Author(s): Songklod Sarapusit, Panida Lertkiatmongkol, Panida Duangkaew, Pornpimol Rongnoparut
Software Mentions: 2
Published: over 13 years ago

10.3390/ijms17040446

Structure of the PLP-Form of the Human Kynurenine Aminotransferase II in a Novel Spacegroup at 1.83 Å Resolution
Cited by: 13
Author(s): Alireza Nematollahi, Guorong Sun, S.J. Harrop, Jane R. Hanrahan, W. Bret Church
Software Mentions: 2
Published: over 10 years ago

10.3390/ijms17122116

Discovery of a New Class of Cathepsin K Inhibitors in Rhizoma Drynariae as Potential Candidates for the Treatment of Osteoporosis
Cited by: 17
Author(s): Zuo-Cheng Qiu, Xiaoli Dong, Yi Dai, Gao Keng Xiao, Xin Luan Wang, Ka-Chun Wong, Man Sau Wong, Xin Yao
Software Mentions: 2
Published: over 9 years ago

10.3390/ijms19010224

Genome-Wide Identification, Expression, and Functional Analysis of the Alkaline/Neutral Invertase Gene Family in Pepper
Cited by: 23
Author(s): Long-Bin Shen, Yuan Yao, He Huang, Yuling Qin, Ziji Liu, Liu Weixia, Zhiqiang Qi, Yang Liu, Zhen-Mu Cao, Yan Yang
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms22147288

Hybrid QM/MM Simulations Confirm Zn(II) Coordination Sphere That Includes Four Cysteines from the P2 × 4R Head Domain
Cited by: 1
Author(s): Francisco Andrés Peralta, J. Pablo Huidobro‐Toro, Raúl Mera‐Adasme
Software Mentions: 2
Published: about 5 years ago

10.1107/S2052252519002926

Determination of the molecular basis for coprogen import by Gram-negative bacteria
Cited by: 16
Author(s): Rhys Grinter, Trevor Lithgow
Software Mentions: 2
Published: over 7 years ago

10.3390/biom10040615

Insight into the RssB-Mediated Recognition and Delivery of σs to the AAA+ Protease, ClpXP
Cited by: 10
Author(s): Dimce Micevski, Kornelius Zeth, Terrence D. Mulhern, Verena J. Schuenemann, Jessica E. Zammit, Kaye N. Truscott, David A. Dougan
Software Mentions: 2
Published: over 6 years ago

10.3390/biom9110740

Molecular Docking Studies of a Cyclic Octapeptide-Cyclosaplin from Sandalwood
Cited by: 20
Author(s): Abheepsa Mishra, Satyahari Dey
Software Mentions: 2
Published: almost 7 years ago

10.3390/md15120366

Computer-Aided Drug Design Applied to Marine Drug Discovery: Meridianins as Alzheimer’s Disease Therapeutic Agents
Cited by: 39
Author(s): Laura Llorach-Parés, Alfons Nonell-Canals, Melchor Sánchez-Martínez, Conxita Àvila
Software Mentions: 2
Published: over 8 years ago

10.1186/s12974-018-1060-5

Benefits of VCE-003.2, a cannabigerol quinone derivative, against inflammation-driven neuronal deterioration in experimental Parkinson’s disease: possible involvement of different binding sites at the PPARγ receptor
Cited by: 45
Author(s): Concepción Garcı́a, María Gómez‐Cañas, Sonia Burgaz, Belén Palomares, Yolanda Gómez‐Gálvez, Cristina Palomo-Garo, Sara Campo, Joel Ferrer-Hernández, Carolina Pavicic, Carmen Navarrete, M. Luz Bellido, Moisés Garcı́a-Arencibia, M. Ruth Pazos, Eduardo Muñóz, Javier Fernández‐Ruiz
Software Mentions: 2
Published: over 8 years ago

10.18632/oncotarget.10599

<i>In silico</i>predicted structural and functional insights of all missense mutations on 2B domain of<i>K1/K10</i>causing genodermatoses
Cited by: 5
Author(s): Santasree Banerjee, Qian Wu, Yuyi Ying, Yanni Li, Matsuyuki Shirota, Dante Neculai, Chen Li
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pbio.0050297

Fabp7 Maps to a Quantitative Trait Locus for a Schizophrenia Endophenotype
Cited by: 176
Author(s): Akïharu Watanabe, Tomoko Toyota, Yuji Owada, Takeshi Hayashi, Yoshimi Iwayama, Miho Matsumata, Yuichi Ishitsuka, Akihiro Nakaya, Motoko Maekawa, Tetsuo Ohnishi, Ryoichi Arai, K. Sakurai, Kazuo Yamada, Hisatake Kondo, Kenji Hashimoto, Noriko Osumi, Takeo Yoshikawa
Software Mentions: 2
Published: almost 19 years ago

10.18632/oncotarget.17207

Eg5 inhibitor YL001 induces mitotic arrest and inhibits tumor proliferation
Cited by: 13
Author(s): Yufei Wang, Xingyu Wu, Mufeng Du, Xi Chen, Xianling Ning, Hong Chen, Siyuan Wang, Jia Liu, Zhenming Liu, Ridong Li, Ge Fu, Chunguang Wang, Michael A. McNutt, Demin Zhou, Yuxin Yin
Software Mentions: 2
Published: over 9 years ago

10.1155/2017/4342789

Identification, Characterization, and Structure of Tm16 from<i>Trichuris muris</i>
Cited by: 10
Author(s): Zhuyun Liu, Alan Kelleher, Shanii Tabb, Junfei Wei, Jeroen Pollet, Peter J. Hotez, María Elena Bottazzi, Bin Zhan, Oluwatoyin A. Asojo
Software Mentions: 2
Published: over 9 years ago

10.1113/JP277079

ORAI1 channel gating and selectivity is differentially altered by natural mutations in the first or third transmembrane domain
Cited by: 36
Author(s): Monica Bulla, Gergely Gyimesi, Jihee Kim, Rajesh Bhardwaj, Matthias A. Hediger, Maud Frieden, Nicolas Demaurex
Software Mentions: 2
Published: over 7 years ago

10.1098/rsob.120142

Structure and function of cytidine monophosphate kinase from <i>Yersinia pseudotuberculosis</i> , essential for virulence but not for survival
Cited by: 11
Author(s): Nicola Walker, Elizabeth A. Clark, Donna C. Ford, Helen L. Bullifent, Erin V. McAlister, Melanie Duffield, K. Ravi Acharya, Petra C. F. Oyston
Software Mentions: 2
Published: over 13 years ago

10.1098/rsob.150005

Three-dimensional topology of the SMC2/SMC4 subcomplex from chicken condensin I revealed by cross-linking and molecular modelling
Cited by: 46
Author(s): Helena Barysz, Ji Hun Kim, Zhuo A. Chen, Damien F. Hudson, Juri Rappsilber, Dietlind L. Gerloff, William C. Earnshaw
Software Mentions: 2
Published: over 11 years ago

10.1098/rsob.160327

Structural and functional analysis of <i>Oceanobacillus iheyensis</i> macrodomain reveals a network of waters involved in substrate binding and catalysis
Cited by: 15
Author(s): Rubén Zapata-Pérez, F. Gil-Ortiz, Ana Belén Martínez-Moñino, Antonio Ginés García-Saura, Judith Juanhuix, Álvaro Sánchez‐Ferrer
Software Mentions: 2
Published: over 9 years ago

10.1098/rsob.170135

Glareosin: a novel sexually dimorphic urinary lipocalin in the bank vole, <i>Myodes glareolus</i>
Cited by: 6
Author(s): Grace M. Loxley, Jennifer Unsworth, Michael J. Turton, Alexandra Jebb, Kathryn S. Lilley, Deborah M. Simpson, Daniel J. Rigden, Jane L. Hurst, Robert J. Beynon
Software Mentions: 2
Published: almost 9 years ago

10.26508/lsa.201900549

Initial phospholipid-dependent Irgb6 targeting to <i>Toxoplasma gondii</i> vacuoles mediates host defense
Cited by: 18
Author(s): Youngae Lee, Hiroshi Yamada, Ariel Pradipta, Ji Guo Su, Masaaki Okamoto, Hikaru Nagaoka, Eizo Takashima, Daron M. Standley, Miwa Sasai, Kohji Takei, Masahiro Yamamoto
Software Mentions: 2
Published: over 6 years ago

10.1038/srep41212

Two strategies to engineer flexible loops for improved enzyme thermostability
Cited by: 111
Author(s): Haoran Yu, Yihan Yan, Cheng Zhang, Paul A. Dalby
Software Mentions: 2
Published: over 9 years ago

10.1107/S2052252520013494

Molecular-replacement phasing using predicted protein structures from <i>AWSEM-Suite</i>
Cited by: 9
Author(s): Shuang Jin, Mitchell D. Miller, M. Chen, Nicholas P. Schafer, Xin Lin, X. Chen, George N. Phillips, Peter G. Wolynes
Software Mentions: 2
Published: almost 6 years ago

10.1002/pro.3779

ConSurf‐DB: An accessible repository for the evolutionary conservation patterns of the majority of PDB proteins
Cited by: 74
Author(s): Adi Ben Chorin, Gal Masrati, Amit Kessel, Aya Narunsky, Josef Sprinzak, Shlomtzion Lahav, Haim Ashkenazy, Nir Ben‐Tal
Software Mentions: 2
Published: over 6 years ago

10.1007/s13238-018-0518-7

Solution structure of the RNA recognition domain of METTL3-METTL14 N6-methyladenosine methyltransferase
Cited by: 78
Author(s): Jinbo Huang, Dongyan Xu, Zhou Gong, Ling-Yun Qin, Shuai Yang, Yue-Ling Zhu, Xiang Wang, Delin Zhang, Tingting Zou, Ping Yin, Chun Tang
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0026981

Structural Basis for Broad Neutralization of Hepatitis C Virus Quasispecies
Cited by: 12
Author(s): Pascal Lapierre, Myriam Troesch, Fernando Álvarez, Hugo Soudeyns
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pbio.3000347

Assembling a plug-and-play production line for combinatorial biosynthesis of aromatic polyketides in Escherichia coli
Cited by: 32
Author(s): Matthew Cummings, Anna Peters, George F. S. Whitehead, Binuraj R. K. Menon, Jason Micklefield, Simon J. Webb, Eriko Takano
Software Mentions: 2
Published: about 7 years ago

10.1073/pnas.2021785118

Structure of SARS-CoV-2 ORF8, a rapidly evolving immune evasion protein
Cited by: 179
Author(s): Thomas G Flower, Cosmo Z. Buffalo, Richard M. Hooy, Marc Allaire, Xuefeng Ren, James H. Hurley
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pbio.1001776

Segmental Helical Motions and Dynamical Asymmetry Modulate Histidine Kinase Autophosphorylation
Cited by: 97
Author(s): A.E. Mechaly, Nathalie Sassoon, Jean‐Michel Betton, Pedro M. Alzari
Software Mentions: 2
Published: over 12 years ago

10.3390/biom11081218

Isotopically Dimethyl Labeling-Based Quantitative Proteomic Analysis of Phosphoproteomes of Soybean Cultivars
Cited by: 3
Author(s): Atieh Moradi, Shuaijian Dai, Emily Oi Ying Wong, Guang Zhu, Fengchao Yu, Hon‐Ming Lam, Zhiyong Wang, A. L. Burlingame, Lin Chen, Alireza Afsharifar, Weichuan Yu, Tingliang Wang, Ning Li
Software Mentions: 2
Published: about 5 years ago

10.1107/S2052252519005372

The structural characterization of a glucosylglycerate hydrolase provides insights into the molecular mechanism of mycobacterial recovery from nitrogen starvation
Cited by: 4
Author(s): T.B. Cereija, Susana Alarico, Eva C. Lourenço, José A. Manso, M. Rita Ventura, Nuno Empadinhas, Sandra Macedo-Ribeiro, Pedro José Barbosa Pereira
Software Mentions: 2
Published: over 7 years ago

10.1107/S205225251800386X

Enzyme catalysis captured using multiple structures from one crystal at varying temperatures
Cited by: 25
Author(s): Sam Horrell, D. Kekilli, Kakali Sen, Robin L. Owen, Florian Dworkowski, S.V. Antonyuk, Thomas W. Keal, Chin W. Yong, Robert R. Eady, S.S. Hasnain, R.W. Strange, Hough
Software Mentions: 2
Published: over 8 years ago

10.1074/jbc.M113.534628

Crystal Structures of Leukotriene C4 Synthase in Complex with Product Analogs
Cited by: 22
Author(s): Damian Niegowski, Thea K. Kleinschmidt, Ulrika Olsson, Shabbir Ahmad, Agnes Rinaldo-Matthis, Jesper Z. Haeggström
Software Mentions: 2
Published: over 12 years ago