pypi: PyMOL | Projects | Ecosyste.ms: Papers

10.7554/eLife.02030

Robust and accurate prediction of residue–residue interactions across protein interfaces using evolutionary information
Cited by: 564
Author(s): С. Г. Овчинников, Hetunandan Kamisetty, David Baker
Software Mentions: 1
Published: over 12 years ago

10.1038/srep28550

Structural insights of a hormone sensitive lipase homologue Est22
Cited by: 31
Author(s): Jing Huang, Ying‐Yi Huo, Rui Ji, Siyun Kuang, Chaoneng Ji, Xue-Wei Xu, Jixi Li
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.40486

Structures of translationally inactive mammalian ribosomes
Cited by: 77
Author(s): Alan Brown, M.R. Baird, M.C.J. Yip, J. Murray, Sichen Shao
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep28486

STARD6 on steroids: solution structure, multiple timescale backbone dynamics and ligand binding mechanism
Cited by: 25
Author(s): Danny Létourneau, Mikaël Bédard, Jérôme Cabana, Andrée Lefèbvre, Jean‐Guy Lehoux, Pierre Lavigne
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.01632

Acetylation of histone H3 at lysine 64 regulates nucleosome dynamics and facilitates transcription
Cited by: 99
Author(s): Vincenzo Di Cerbo, Fabio Mohn, Daniel P. Ryan, Emilie Montellier, Salim Kacem, Philipp Tropberger, Eleni Kallis, Monika Holzner, Leslie Hoerner, Angelika Feldmann, Florian Richter, Andrew J. Bannister, Gerhard Mittler, Jens Michaelis, Saadi Khochbin, Robert Feil, Dirk Schuebeler, Tom Owen-Hughes, Sylvain Daujat, Robert Schneider
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2148-11-198

The evolutionary history of the catenin gene family during metazoan evolution
Cited by: 42
Author(s): Zi-Ming Zhao, Albert B. Reynolds, Eric A. Gaucher
Software Mentions: 1
Published: about 15 years ago

10.1038/srep28922

Destabilizing an interacting motif strengthens the association of a designed ankyrin repeat protein with tubulin
Cited by: 26
Author(s): Shoeb Ahmad, Ludovic Pecqueur, Birgit Dreier, Djemel Hamdane, Magali Aumont-Niçaise, Andreas Plückthun, M. Knossow, B. Gigant
Software Mentions: 1
Published: about 10 years ago

10.1038/srep29077

Multifaceted anti-amyloidogenic and pro-amyloidogenic effects of C-reactive protein and serum amyloid P component in vitro
Cited by: 21
Author(s): Daisaku Ozawa, Ryo Nomura, Palma Mangione, Kazuhiro Hara, Tadakazu Okoshi, Riccardo Porcari, Vittorio Bellotti, Hironobu Naiki
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.55143

CRISPR-Cas12a exploits R-loop asymmetry to form double-strand breaks
Cited by: 64
Author(s): Joshua C Cofsky, Deepti Karandur, Carolyn J Huang, Isaac P. Witte, John Kuriyan, Jennifer A. Doudna
Software Mentions: 1
Published: about 6 years ago

10.1038/srep29548

Functional conservation and diversification of the soybean maturity gene E1 and its homologs in legumes
Cited by: 27
Author(s): Xingzheng Zhang, Hong Zhai, Yaying Wang, Xiaojie Tian, Yupeng Zhang, Hongyan Wu, Shixiang Lü, Guang Yang, Yuqiu Li, Lu Wang, Bo Hu, Qingyun Bu, Zhengjun Xia
Software Mentions: 1
Published: about 10 years ago

10.1038/srep29691

A sodium channel inhibitor ISTX-I with a novel structure provides a new hint at the evolutionary link between two toxin folds
Cited by: 6
Author(s): Mingqiang Rong, Jiangxin Liu, Meilin Zhang, Wang Gan, Gang Zhao, Guodong Wang, Yaping Zhang, Kaifeng Hu, Ren Lai
Software Mentions: 1
Published: about 10 years ago

10.1038/srep30279

Ligand binding to an Allergenic Lipid Transfer Protein Enhances Conformational Flexibility resulting in an Increase in Susceptibility to Gastroduodenal Proteolysis
Cited by: 34
Author(s): Syed Umer Abdullah, Yuri Alexeev, Philip E. Johnson, Neil M. Rigby, Alan Mackie, B. Dhaliwal, E.N. Clare Mills
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.27451

Transcription factor clusters regulate genes in eukaryotic cells
Cited by: 82
Author(s): Adam J. M. Wollman, Sviatlana Shashkova, Erik Hedlund, Rosmarie Friemann, Stefan Hohmann, Mark C. Leake
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep30170

Deep sequencing reveals global patterns of mRNA recruitment during translation initiation
Cited by: 11
Author(s): Rong Gao, Kai Yu, Ju-Kui Nie, Tengfei Lian, Jianshi Jin, Anders Liljas, Xiao Dong Su
Software Mentions: 1
Published: about 10 years ago

10.1038/srep30655

Binding Characteristics of Sphingosine-1-Phosphate to ApoM hints to Assisted Release Mechanism via the ApoM Calyx-Opening
Cited by: 20
Author(s): Hansi Zhang, Kristýna Pluháčková, Zhenyan Jiang, Rainer A. Böckmann
Software Mentions: 1
Published: about 10 years ago

10.1038/srep30909

Fusion to a homo-oligomeric scaffold allows cryo-EM analysis of a small protein
Cited by: 33
Author(s): Francesca Coscia, Leandro F. Estrozi, Fabienne Hans, Hélène Malet, Marjolaine Noirclerc‐Savoye, Guy Schoehn, Carlo Petosa
Software Mentions: 1
Published: about 10 years ago

10.1038/srep31005

Dynamics Correlation Network for Allosteric Switching of PreQ1 Riboswitch
Cited by: 23
Author(s): Wei Wang, Cheng Jiang, Jinmai Zhang, Wei Ye, Ray Luo, Haifeng Chen
Software Mentions: 1
Published: about 10 years ago

10.3390/ijms22073440

The Molecular Basis of Ubiquitin-Conjugating Enzymes (E2s) as a Potential Target for Cancer Therapy
Cited by: 12
Author(s): Xiaodi Du, Hai-Liang Song, Nengxing Shen, Ruiqi Hua, Guangyou Yang
Software Mentions: 1
Published: over 5 years ago

10.1038/srep31176

Structure of a Highly Active Cephalopod S-crystallin Mutant: New Molecular Evidence for Evolution from an Active Enzyme into Lens-Refractive Protein
Cited by: 10
Author(s): W.-H. Tan, Shu Cheng, Yu Tung Liu, Cheng Wu, Mei-Ju Lin, Chiao Che Chen, Lin Chao, Chi-Yuan Chou
Software Mentions: 1
Published: about 10 years ago

10.1038/srep31074

Repositioning organohalogen drugs: a case study for identification of potent B-Raf V600E inhibitors via docking and bioassay
Cited by: 27
Author(s): Yisu Li, Binbin Guo, Zhijian Xu, Bo Li, Tingting Cai, Xinben Zhang, Yuqi Yu, He-Yao Wang, Jiye Shi, Weiliang Zhu
Software Mentions: 1
Published: about 10 years ago

10.1038/srep31500

N-acylhydrazone inhibitors of influenza virus PA endonuclease with versatile metal binding modes
Cited by: 47
Author(s): Mauro Carcelli, Dominga Rogolino, Anna Gatti, Laura De Luca, Mario Sechi, Gyanendra Kumar, Stephen W. White, Annelies Stevaert, Lieve Naesens
Software Mentions: 1
Published: about 10 years ago

10.1038/srep31463

The structural origin of metabolic quantitative diversity
Cited by: 19
Author(s): S. Koshiba, Ikuko N. Motoike, Kazuyuki Kojima, Takanori Hasegawa, Matsuyuki Shirota, Tomo Saito, Daisuke Saigusa, Inaho Danjoh, Fumiki Katsuoka, Soichi Ogishima, Yosuke Kawai, Yumi Yamaguchi-Kabata, Miyuki Sakurai, Sachiko Hirano, Junichi Nakata, Hozumi Motohashi, Atsushi Hozawa, Shinichi Kuriyama, Naoko Minegishi, Masao Nagasaki, Takako Toda, Nobuo Fuse, Hideyasu Kiyomoto, Junichi Sugawara, Yôichi Suzuki, Shigeo Kure, Nobuo Yaegashi, Osamu Takahashi, Kengo Kinoshita, Jun Yasuda, Masayuki Yamamoto
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep31425

Structure and function of human Naa60 (NatF), a Golgi-localized bi-functional acetyltransferase
Cited by: 23
Author(s): Jiyun Chen, Liang Liu, Chun-Ling Cao, Meijun Li, Kemin Tan, Xiaohan Yang, Cai‐Hong Yun
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep31933

Disease-Homologous Mutation in the Cation Diffusion Facilitator Protein MamM Causes Single-Domain Structural Loss and Signifies Its Importance
Cited by: 16
Author(s): S. Barber-Zucker, René Uebe, Geula Davidov, Yotam Navon, Dror Sherf, Jordan H. Chill, Itamar Kass, Ronit Bitton, Dirk Schüler, Raz Zarivach
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep32073

A mutagenic study identifying critical residues for the structure and function of rice manganese transporter OsMTP8.1
Cited by: 17
Author(s): Xi Chen, Jiyu Li, Lihua Wang, Gang Ma, Wei Zhang
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep32309

Crystal Structure of Major Envelope Protein VP24 from White Spot Syndrome Virus
Cited by: 9
Author(s): Lifang Sun, Su Y, Yunmeng Zhao, Zhenfang Fu, Yunkun Wu
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep32244

Abcb1 in Pigs: Molecular cloning, tissues distribution, functional analysis, and its effect on pharmacokinetics of enrofloxacin
Cited by: 19
Author(s): Tingting Guo, Jinhu Huang, Zhang Hong-yu, Lingling Dong, Dawei Guo, Lin Guo, Fang He, Zohaib Ahmed Bhutto, Liping Wang
Software Mentions: 1
Published: almost 10 years ago

10.3390/ijms22073597

Pressure and Chemical Unfolding of an α-Helical Bundle Protein: The GH2 Domain of the Protein Adaptor GIPC1
Cited by: 3
Author(s): Cécile Dubois, V.J. Planelles-Herrero, Camille Tillatte-Tripodi, Stéphane Delbecq, Léa Mammri, Helena Sirkia, Virginie Ropars, Christian Roumestand, Philippe Barthe
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms13010879

Molecular Cloning, Characterization and Predicted Structure of a Putative Copper-Zinc SOD from the Camel, Camelus dromedarius
Cited by: 7
Author(s): Farid S. Ataya, Dalia Fouad, Ebtsam Al-Olayan, Ajamaluddin Malik
Software Mentions: 1
Published: over 14 years ago

10.1038/srep32371

The BR domain of PsrP interacts with extracellular DNA to promote bacterial aggregation; structural insights into pneumococcal biofilm formation
Cited by: 24
Author(s): Tim Schulte, Cecilia Mikaelsson, Audrey Beaussart, Alexey Kikhney, M.G. Deshmukh, Sebastian Wolniak, Anuj Pathak, Christine Ebel, Jonas Löfling, Federico Fogolari, Birgitta Henriques‐Normark, Yves F. Dufrêne, Dmitri I. Svergun, Per‐Åke Nygren, Adnane Achour
Software Mentions: 1
Published: almost 10 years ago

10.3390/ijms22073629

Computational Analysis of the Interactions between the S100B Extracellular Chaperone and Its Amyloid β Peptide Client
Cited by: 5
Author(s): Filipe E. P. Rodrigues, António J. Figueira, Cláudio M. Gomes, Miguel Machuqueiro
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms130810067

2,3-Dihydro-1H-cyclopenta[b]quinoline Derivatives as Acetylcholinesterase Inhibitors—Synthesis, Radiolabeling and Biodistribution
Cited by: 24
Author(s): Paweł Szymański, Alice Lázníčková, Milan Lázníček, Marek Bajda, Barbara Malawska, Magdalena Markowicz, Elżbieta Mikiciuk-Olasik
Software Mentions: 1
Published: about 14 years ago

10.1186/s12866-016-0853-x

In vivo functional and molecular characterization of the Penicillin-Binding Protein 4 (DacB) of Pseudomonas aeruginosa
Cited by: 13
Author(s): Cristian Gustavo Aguilera Rossi, Paulino Gómez‐Puertas, Juan A. Ayala
Software Mentions: 1
Published: almost 10 years ago

10.3390/ijms131216899

Electrochemical Characterization of Escherichia coli Adaptive Response Protein AidB
Cited by: 6
Author(s): Michael J. Hamill, Marco Jost, Cintyu Wong, Nicholas C. Bene, Catherine L. Drennan, Sean J. Elliott
Software Mentions: 1
Published: over 13 years ago

10.1038/srep33477

A Novel Assay for Screening Inhibitors Targeting HIV Integrase LEDGF/p75 Interaction Based on Ni2+ Coated Magnetic Agarose Beads
Cited by: 5
Author(s): Dawei Zhang, Hong He, Mengmeng Liu, Meng Zhang, Shun‐Xing Guo
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep33468

Characterisation of a flavonoid ligand of the fungal protein Alt a 1
Cited by: 25
Author(s): María Garrido‐Arandia, Javier Silva‐Navas, Carmen Ramírez-Castillejo, Nuria Cubells-Baeza, Cristina Gómez‐Casado, Domingo Barber, Juan C. del Pozo, Pablo González Melendi, Luis F. Pacios, Araceli Díaz‐Perales
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep33474

β-Hairpin of Islet Amyloid Polypeptide Bound to an Aggregation Inhibitor
Cited by: 33
Author(s): Ewa A. Mirecka, Sophie Feuerstein, Lothar Gremer, Gunnar F. Schröder, Matthias Stoldt, Dieter Willbold, Wolfgang Hoyer
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep33391

Structural Analysis of the Hg(II)-Regulatory Protein Tn501 MerR from Pseudomonas aeruginosa
Cited by: 31
Author(s): Dan Wang, Shanqing Huang, Pingying Liu, Xichun Liu, Yafeng He, Weizhong Chen, Qingyuan Hu, T. Wei, Jianhua Gan, Jing Ma, Hao Chen
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep33314

Fluorescent protein-scorpion toxin chimera is a convenient molecular tool for studies of potassium channels
Cited by: 28
Author(s): Alexey I. Kuzmenkov, Oksana V. Nekrasova, Kseniya S. Kudryashova, Steve Peigneur, Jan Tytgat, Alexey V. Stepanov, Mikhaǐl P. Kirpichnikov, Eugene V. Grishin, Аlexey V. Feofanov, Alexander A. Vassilevski
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep33903

Structure and catalytic mechanism of monodehydroascorbate reductase, MDHAR, from Oryza sativa L. japonica
Cited by: 37
Author(s): Ae Kyung Park, Il-Sup Kim, Hackwon Do, Byoung Wook Jeon, Chang Woo Lee, Soo Jung Roh, Seung Chul Shin, Hyun Park, Young-Saeng Kim, Yul-Ho Kim, Ho-Sung Yoon, Jun Hyuck Lee, Han-Woo Kim
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep34134

The UPR inducer DPP23 inhibits the metastatic potential of MDA-MB-231 human breast cancer cells by targeting the Akt–IKK–NF-κB–MMP-9 axis
Cited by: 30
Author(s): Soon Young Shin, Chang Gun Kim, You Jung Jung, Yoongho Lim, Young Han Lee
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep33797

A general and efficient strategy for generating the stable enzymes
Cited by: 52
Author(s): Xiaofei Zhang, Guangyu Yang, Yong Zhang, Yuan Xie, Stephen G. Withers, Yan Feng
Software Mentions: 1
Published: almost 10 years ago

10.3390/ijms14011667

Crystal Structure of Dimeric Flavodoxin from Desulfovibrio gigas Suggests a Potential Binding Region for the Electron-Transferring Partner
Cited by: 11
Author(s): Yin-Cheng Hsieh, Tze Shyang Chia, Hoong‐Kun Fun, Chun‐Jung Chen
Software Mentions: 1
Published: over 13 years ago

10.1038/srep34269

Improved affinity at the cost of decreased specificity: a recurring theme in PDZ-peptide interactions
Cited by: 14
Author(s): O. Karlsson, Gustav Sundell, Eva Andersson, Ylva Ivarsson, Per Jemth
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep34686

Epitomics: IgG-epitome decoding of E6, E7 and L1 proteins from oncogenic human papillomavirus type 58
Cited by: 13
Author(s): Wan-Xiang Xu, Jian Wang, Haiping Tang, Yaping He, Qianxi Zhu, Satish Kumar Gupta, Shaohua Gu, Qiang Huang, Chaoneng Ji, Lingfeng Liu, Guiling Li, Congjian Xu, Yi Xie
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep34993

The unravelling of the complex pattern of tyrosinase inhibition
Cited by: 104
Author(s): Batel Deri, M. Kanteev, Mor Goldfeder, Daniel Lecina, Vı́ctor Guallar, Noam Adir, Ayelet Fishman
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep35326

The contribution of major histocompatibility complex contacts to the affinity and kinetics of T cell receptor binding
Cited by: 17
Author(s): Hao Zhang, Hong-Sheng Lim, Berhard Knapp, Charlotte M. Deane, Milos Aleksic, Omer Dushek, P. Anton van der Merwe
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep35297

High-resolution crystal structure of the therapeutic antibody pembrolizumab bound to the human PD-1
Cited by: 68
Author(s): Shoichiro Horita, Yoshihiro Nomura, Yuichi Sato, Tatsuro Shimamura, So Iwata
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep35414

Clinical and genetic analyses reveal novel pathogenic ABCA4 mutations in Stargardt disease families
Cited by: 11
Author(s): Bing Lin, Xue‐Bi Cai, Zhili Zheng, Xiu‐Feng Huang, Xiaoling Liu, Jia Qu, Zi‐Bing Jin
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep35279

The room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography
Cited by: 36
Author(s): Petra Edlund, Heikki Takala, Elin Claesson, Léocadie Henry, Robert Dods, Heli Lehtivuori, Matthijs R. Panman, Kanupriya Pande, Thomas A. White, Takanori Nakane, Oskar Berntsson, Emil Gustavsson, Petra Båth, Vaibhav Modi, Shatabdi Roy-Chowdhury, James Zook, Peter Berntsen, Suraj Pandey, Ishwor Poudyal, Jason Tenboer, Christopher Kupitz, Anton Barty, Petra Fromme, Jake Koralek, Tomoyuki Tanaka, John C. H. Spence, Mao Liang, Mark S. Hunter, Sébastien Boutet, Eriko Nango, Keith Moffat, Gerrit Groenhof, Janne A. Ihalainen, Emina A. Stojković, Marius Schmidt, Sebastian Westenhoff
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep35169

Molecular basis for catalysis and substrate-mediated cellular stabilization of human tryptophan 2,3-dioxygenase
Cited by: 69
Author(s): Ariel Lewis-Ballester, F. Forouhar, Sung Mi Kim, Scott Lew, Yongqiang Wang, Shay Karkashon, J. Seetharaman, Dipanwita Batabyal, Bing Yu Chiang, M. Hussain, Maria Almira Correia, Syun Ru Yeh, Liang Tong
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep35294

Differential protein structural disturbances and suppression of assembly partners produced by nonsense GABRG2 epilepsy mutations: implications for disease phenotypic heterogeneity
Cited by: 11
Author(s): Juexin Wang, Dingding Shen, Geqing Xia, Wangzhen Shen, Robert L. Macdonald, Dong Xu, Jing‐Qiong Kang
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep35385

Direct and indirect mechanisms of KLK4 inhibition revealed by structure and dynamics
Cited by: 28
Author(s): Blake T. Riley, O.V. Ilyichova, Maurício G. S. Costa, Benjamin T. Porebski, Simon J. de Veer, Joakim E. Swedberg, Itamar Kass, Jonathan M. Harris, David E. Hoke, Ashley M. Buckle
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep35465

An anti-infective synthetic peptide with dual antimicrobial and immunomodulatory activities
Cited by: 93
Author(s): Osmar N. Silva, César de la Fuente-Núñez, Evan F. Haney, Isabel C. M. Fensterseifer, Suzana Meira Ribeiro, William F. Porto, Paul Brown, Célio Faria-Junior, Taia Maria Berto Rezende, Susana Elisa Moreno, Timothy K. Lu, Robert E. W. Hancock, Octávio L. Franco
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep36379

A structural and functional study on the 2-C-methyl-d-erythritol-4-phosphate cytidyltransferase (IspD) from Bacillus subtilis
Cited by: 9
Author(s): Yipeng Jin, Zhongchuan Liu, Yanjie Li, Weifeng Liu, Yong Tao, Ganggang Wang
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep36288

Identification of a New Broadly Cross-reactive Epitope within Domain III of the Duck Tembusu Virus E Protein
Cited by: 18
Author(s): Chenxi Li, Xiaofei Bai, Runze Meng, Wulin Shaozhou, Qingshan Zhang, Rong-Hong Hua, Jyung-Hurng Liu, Ming Liu, Yun Zhang
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep36622

SGTA interacts with the proteasomal ubiquitin receptor Rpn13 via a carboxylate clamp mechanism
Cited by: 10
Author(s): Arjun Thapaliya, Yvonne Nyathi, Santiago Martínez-Lumbreras, E. Krysztofinska, N.J. Evans, Isabelle L. Terry, Stephen High, Rivka L. Isaacson
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep36527

High adaptability of the omega loop underlies the substrate-spectrum-extension evolution of a class A β-lactamase, PenL
Cited by: 10
Author(s): Hyeon Gyu Yi, Jin Kyeong Choi, Junghyun Hwang, Fabio Prati, Thinh Phat Cao, Sung Haeng Lee, Heenam Stanley Kim
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12862-015-0506-y

Tex19 and Sectm1 concordant molecular phylogenies support co-evolution of both eutherian-specific genes
Cited by: 2
Author(s): Laurent Bianchetti, Yara Tarabay, Odile Lecompte, Roland H. Stote, Olivier Poch, Annick Dejaegere, Stéphane Viville
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep37054

Strong and widespread action of site-specific positive selection in the snake venom Kunitz/BPTI protein family
Cited by: 13
Author(s): Vera Župunski, Dušan Kordiš
Software Mentions: 1
Published: almost 10 years ago

10.3390/ijms14035608

Structure-Based Search for New Inhibitors of Cholinesterases
Cited by: 188
Author(s): Marek Bajda, Anna Więckowska, Michalina Hebda, Natalia Guzior, Christoph A. Sotriffer, Barbara Malawska
Software Mentions: 1
Published: over 13 years ago

10.1038/srep36858

Friedelin Synthase from Maytenus ilicifolia: Leucine 482 Plays an Essential Role in the Production of the Most Rearranged Pentacyclic Triterpene
Cited by: 29
Author(s): Tatiana M. Souza-Moreira, Thaís Barboni Alves, Karina A. Pinheiro, Lidiane Gaspareto Felippe, G.M.A. Lima, Tatiana F. Watanabe, Cristina C. Barbosa, Vânia Santos, Norberto Peporine Lopes, Sandro Roberto Valentini, Rafael Victório Carvalho Güido, Maysa Furlan, Cleslei Fernando Zanelli
Software Mentions: 1
Published: over 9 years ago

10.1038/srep37887

Non-RVD mutations that enhance the dynamics of the TAL repeat array along the superhelical axis improve TALEN genome editing efficacy
Cited by: 9
Author(s): N. Tochio, Kohei Umehara, Jun-ichi Uewaki, Holger Flechsig, Masaharu Kondo, Takehisa Dewa, Tetsushi Sakuma, Takashi Yamamoto, Takashi Saitoh, Yuichi Togashi, Shin‐ichi Tate
Software Mentions: 1
Published: over 9 years ago

10.1038/srep37990

Structural basis for the dissociation of α-synuclein fibrils triggered by pressure perturbation of the hydrophobic core
Cited by: 33
Author(s): Guilherme A. P. de Oliveira, Mayra A. Marques, Carolina Cruzeiro-Silva, Yraima Cordeiro, Caroline Schuabb, Adolfo H. Moraes, Roland Winter, Hartmut Oschkinat, Débora Foguel, Mônica S. Freitas, Jerson L. Silva
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms14035284

Inhibition of Human Transthyretin Aggregation by Non-Steroidal Anti-Inflammatory Compounds: A Structural and Thermodynamic Analysis
Cited by: 18
Author(s): Ricardo Sant’Anna, Carolina A. Braga, Igor Polikarpov, Salvador Ventura, L.M.T.R. Lima, Débora Foguel
Software Mentions: 1
Published: over 13 years ago

10.1038/srep37978

Biochemical and Structural Analysis of a Novel Esterase from Caulobacter crescentus related to Penicillin-Binding Protein (PBP)
Cited by: 14
Author(s): Bum Han Ryu, Tri Duc Ngo, Woo-Kyoung Yoo, Sojeong Lee, Boo‐Young Kim, Euijoo Lee, Kyeong Kyu Kim, T. Doohun Kim
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms140714185

Characterization of the Interaction between Eupatorin and Bovine Serum Albumin by Spectroscopic and Molecular Modeling Methods
Cited by: 108
Author(s): Hong‐Liang Xu, Nannan Yao, Haoran Xu, Tianshi Wang, Guiying Li, Zhengqiang Li
Software Mentions: 1
Published: about 13 years ago

10.1038/srep38094

Modular Architecture and Unique Teichoic Acid Recognition Features of Choline-Binding Protein L (CbpL) Contributing to Pneumococcal Pathogenesis
Cited by: 19
Author(s): Javier Gutiérrez-Fernández, Malek Saleh, Martín Alcorlo, Alejandro Gómez-Mejía, David Pantoja-Uceda, Miguel Á. Treviño, Franziska Voß, Mohammed R. Abdullah, Sergio Galán-Bartual, Jolien Seinen, Pedro A. Sánchez‐Murcia, Federico Gago, Marta Bruix, Sven Hammerschmidt, J.A. Hermoso
Software Mentions: 1
Published: over 9 years ago

10.1038/srep38363

New Insights into Molecular Organization of Human Neuraminidase-1: Transmembrane Topology and Dimerization Ability
Cited by: 40
Author(s): Pascal Maurice, Stéphanie Baud, Olga V. Bocharova, Eduard V. Bocharov, Andrei Kuznetsov, Charlotte Kawecki, Olivier Bocquet, Béatrice Romier, Laëtitia Gorisse, Maxime Ghirardi, Laurent Duca, Sébastien Blaise, Laurent Martiny, Manuel Dauchez, Roman G. Efremov, Laurent Debelle
Software Mentions: 1
Published: over 9 years ago

10.1186/s12866-019-1577-5

Missense mutations in a transmembrane domain of the Komagataeibacter xylinus BcsA lead to changes in cellulose synthesis
Cited by: 10
Author(s): Luis Fernando Salgado, Silvia Blank, Reza Alipour Moghadam Esfahani, Janice L. Strap, Dario Bonetta
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms140917830

Trifluoroethanol Modulates Amyloid Formation by the All α-Helical URN1 FF Domain
Cited by: 9
Author(s): Patrizia Marinelli, Virginia Leyva Castillo, Salvador Ventura
Software Mentions: 1
Published: almost 13 years ago

10.1038/s41598-017-10337-7

Studies on the regulatory mechanism of isocitrate dehydrogenase 2 using acetylation mimics
Cited by: 24
Author(s): Yuqun Xu, Lingwen Liu, Akira Nakamura, Shinichi Someya, Takuya Miyakawa, Masaru Tanokura
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-10246-9

Elucidation of potential sites for antibody engineering by fluctuation editing
Cited by: 15
Author(s): Saeko Yanaka, Yoshitaka Moriwaki, Kouhei Tsumoto, Kenji Sugase
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-10265-6

TCR–like antibodies mediate complement and antibody-dependent cellular cytotoxicity against Epstein-Barr virus–transformed B lymphoblastoid cells expressing different HLA-A*02 microvariants
Cited by: 11
Author(s): Junyun Lai, Joanna Ai Ling Choo, Wei Jian Tan, Chien Tei Too, Min Zin Oo, Manuel Adrian Suter, Fatima Mustafa, Nalini Srinivasan, Conrad En Zuo Chan, Andrew Lim, Youjia Zhong, Soh Ha Chan, Brendon J. Hanson, Nicholas R. J. Gascoigne, Paul A. MacAry
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms141223654

Antitumor Mechanisms of Amino Acid Hydroxyurea Derivatives in the Metastatic Colon Cancer Model
Cited by: 2
Author(s): Nina Šaban, Višnja Stepanić, Vučinić Srđan, Anita Horvatić, Mario Cindrić, Ivana Perković, Branka Zorc, Nada Oršolić, Mladen Mintas, Krešimir Pavelić, Sandra Kraljević Pavelić
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-017-10917-7

1α,20S-Dihydroxyvitamin D3 Interacts with Vitamin D Receptor: Crystal Structure and Route of Chemical Synthesis
Cited by: 21
Author(s): Zongtao Lin, Hao Chen, Anna Y. Belorusova, John C. Bollinger, Edith K.Y. Tang, Zorica Janjetovic, Tae Kang Kim, Zhongzhi Wu, Duane D. Miller, Andrzej Slominski, Arnold E. Postlethwaite, Robert C. Tuckey, Natacha Rochel, Wei Li
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-10737-9

De novo design of antibody complementarity determining regions binding a FLAG tetra-peptide
Cited by: 25
Author(s): Kevin C. Entzminger, Ji Young Hyun, Robert J. Pantazes, Athéna C. Patterson-Orazem, Ahlam Qerqez, Zach Frye, Randall A. Hughes, Andrew D. Ellington, Raquel L. Lieberman, Costas D. Maranas, Jennifer A. Maynard
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-10906-w

Effect of amino acid mutations on the conformational dynamics of amyloidogenic immunoglobulin light-chains: A combined NMR and in silico study
Cited by: 4
Author(s): Sujoy Mukherjee, Simon P. Pondaven, Kieran Hand, Jillian Madine, Christopher P. Jaroniec
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-10741-z

Disease mutations reveal residues critical to the interaction of P4-ATPases with lipid substrates
Cited by: 20
Author(s): Rasmus Hvidbjerg Gantzel, Louise S. Mogensen, Stine A. Mikkelsen, Bente Vilsen, Robert S. Molday, Anna L. Vestergaard, Jens Peter Andersen
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-10932-8

Halotolerant aminopeptidase M29 from Mesorhizobium SEMIA 3007 with biotechnological potential and its impact on biofilm synthesis
Cited by: 6
Author(s): Elwi Guillermo Machado Sierra, Mariana Rangel Pereira, Thaís Carvalho Maester, Elisângela Soares Gomes-Pepe, E.R. Mendoza, Eliana Gertrudes de Macedo Lemos
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-11219-8

Structural basis for functional selectivity and ligand recognition revealed by crystal structures of human secreted phospholipase A2 group IIE
Cited by: 14
Author(s): Shulin Hou, Tingting Xu, Jinxin Xu, Linbing Qu, Yong Xu, Ling Chen, Jinsong Liu
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-11472-x

Rigidly connected multispecific artificial binders with adjustable geometries
Cited by: 26
Author(s): Yufan Wu, A. Batyuk, Annemarie Honegger, Fabian Brandl, Peer R. E. Mittl, Andreas Plückthun
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-11018-1

Synergy of two low-affinity NLSs determines the high avidity of influenza A virus nucleoprotein NP for human importin α isoforms
Cited by: 18
Author(s): Wei Wu, Rajeshwer S. Sankhala, Tyler J. Florio, Lixin Zhou, Nhan L. T. Nguyen, Ravi K. Lokareddy, Gino Cingolani, Nelly Panté
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms15010504

Molecular Cloning, Bioinformatics Analysis and Expression of Insulin-Like Growth Factor 2 from Tianzhu White Yak, Bos grunniens
Cited by: 15
Author(s): Quanwei Zhang, Jishang Gong, Xueying Wang, Xiaohu Wu, Yalan Li, Youji Ma, Yong Zhang, Xingxu Zhao
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-017-11736-6

Structural insights into the Middle East respiratory syndrome coronavirus 4a protein and its dsRNA binding mechanism
Cited by: 20
Author(s): Maria Batool, Masaud Shah, Mahesh Chandra Patra, Dhanusha Yesudhas, Sangdun Choi
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-12090-3

Rethinking the Origin of Primates by Reconstructing Their Diel Activity Patterns Using Genetics and Morphology
Cited by: 17
Author(s): Yeming Wu, Haifeng Wang, Haitao Wang, Elizabeth A. Hadly
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-11952-0

Phosphorylation of Suppressor of Hairless impedes its DNA-binding activity
Cited by: 11
Author(s): Anja C. Nagel, Jasmin S. Auer, Adriana Schulz, Jens Pfannstiel, Zhenyu Yuan, Courtney Collins, Rhett A. Kovall, Anette Preiss
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-12174-0

Enabling stop codon read-through translation in bacteria as a probe for amyloid aggregation
Cited by: 5
Author(s): Laura Molina García, Rafael Giraldo
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-10583-9

A Dual-Specific Targeting Approach Based on the Simultaneous Recognition of Duplex and Quadruplex Motifs
Cited by: 29
Author(s): Thi Quynh Ngoc Nguyen, Kah Wai Lim, Anh Tuân Phan
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-11416-5

Very-Low-Density Lipoprotein of Metabolic Syndrome Modulates Gap Junctions and Slows Cardiac Conduction
Cited by: 18
Author(s): Hsiang‐Chun Lee, Chih-Chieh Chen, Wei–Chung Tsai, Hsiang‐Ju Lin, Yi-Lin Shiao, Sheng‐Hsiung Sheu, Bin‐Nan Wu, Chu‐Huang Chen, Wen‐Ter Lai
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-10839-4

Antibacterial and immunomodulatory activities of insect defensins-DLP2 and DLP4 against multidrug-resistant Staphylococcus aureus
Cited by: 59
Author(s): Zhanzhan Li, Ruoyu Mao, Da Teng, Ya Hao, Huixian Chen, Xiumin Wang, Xiao Wang, Na Yang, Jianhua Wang
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-12283-w

Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT
Cited by: 35
Author(s): Tadashi Satoh, Chihong Song, Tong Zhu, T. Toshimori, Kazuyoshi Murata, Yuzo Hayashi, Hironari Kamikubo, Takayuki Uchihashi, Koichi Kato
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-12999-9

Autosomal dominant transmission of complicated hereditary spastic paraplegia due to a dominant negative mutation of KIF1A, SPG30 gene
Cited by: 36
Author(s): Chong Kun Cheon, Sohee Lim, Yoo-Mi Kim, Doyoun Kim, Na-Yoon Lee, Tae-Myung Yoon, Nam-Soon Kim, Eunjoon Kim, Jae-Ran Lee
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-13155-z

Activation-Induced Conformational Changes of Dopamine D3 Receptor Promote the Formation of the Internal Water Channel
Cited by: 8
Author(s): Wei-Hsiang Weng, Ya-Tzu Li, Hao-Jen Hsu
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-13371-7

Plasma-Generated OH Radical Production for Analyzing Three-Dimensional Structure in Protein Therapeutics
Cited by: 32
Author(s): Benjamin B. Minkoff, Joshua M. Blatz, Faraz A. Choudhury, D. M. Benjamin, J. L. Shohet, Michael R. Sussman
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-12530-0

Crystal structure of the flexible tandem repeat domain of bacterial cellulose synthesis subunit C
Cited by: 26
Author(s): Shingo Nojima, Atsushi Fujishima, Koji Kato, Kayoko Ohuchi, Nobutaka Shimizu, Kazuya Yonezawa, Kenji Tajima, Min Yao
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-13427-8

Characterization of Fluorescein Arsenical Hairpin (FlAsH) as a Probe for Single-Molecule Fluorescence Spectroscopy
Cited by: 12
Author(s): Dennis D. Fernandes, Jasbir Bamrah, Senthilkumar Kailasam, Gregory-Neal W. Gomes, Yuchong Li, Hans-Joachim Wieden, Claudiu C. Gradinaru
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-13135-3

Molecular Mechanisms of the Binding and Specificity of Streptococcus Pneumoniae Sortase C Enzymes for Pilin Subunits
Cited by: 7
Author(s): Emmanuel B. Naziga, Jeff Wereszczynski
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-13709-1

Interfering with the high-affinity interaction between wheat amylase trypsin inhibitor CM3 and toll-like receptor 4: in silico and biosensor-based studies
Cited by: 32
Author(s): Massimiliano Cuccioloni, Matteo Mozzicafreddo, Laura Bonfili, Valentina Cecarini, Mara Giangrossi, Maurizio Falconi, Shin-Ichiroh Saitoh, Anna Maria Eleuteri, Mauro Angeletti
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-13557-z

Structural analysis of PIM1 kinase complexes with ATP-competitive inhibitors
Cited by: 18
Author(s): Jozefina Bogusz, Karol Źrubek, Krzysztof P. Rembacz, P. Grudnik, Przemysław Golik, Małgorzata Romanowska, Benedykt Władyka, Grzegorz Dubin
Software Mentions: 1
Published: almost 9 years ago

Projects: pypi: PyMOL

Science Score: 90/100

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Papers Mentioning PyMOL 8,266