10.1038/s41598-019-40232-2

Crystal structures of multidrug efflux pump MexB bound with high-molecular-mass compounds
Cited by: 23
Author(s): Keisuke Sakurai, Seiji Yamasaki, Kaori Nakao, Kunihiko Nishino, Akihito Yamaguchi, Ryosuke Nakashima
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-40983-y

Identification of fibrinogen as a natural inhibitor of MMP-2
Cited by: 14
Author(s): Hassan Sarker, Eugenio Hardy, Ayman Haimour, Walter P. Maksymowych, Lorenzo D. Botto, Carlos Fernández-Patrón
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-41005-7

A Peptide-Nanoparticle System with Improved Efficacy against Multidrug Resistant Bacteria
Cited by: 74
Author(s): Indrani Pal, Dipita Bhattacharyya, Rup Kumar Kar, D. Zarena, Anirban Bhunia, Hanudatta S. Atreya
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-40461-5

Exploring designability of electrostatic complementarity at an antigen-antibody interface directed by mutagenesis, biophysical analysis, and molecular dynamics simulations
Cited by: 29
Author(s): Kouhei Yoshida, Daisuke Kuroda, Masato Kiyoshi, Makoto Nakakido, Satoru Nagatoishi, Shinji Soga, Hideaki Shirai, Kouhei Tsumoto
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-41355-2

Glycosaminoglycans influence enzyme activity of MMP2 and MMP2/TIMP3 complex formation - Insights at cellular and molecular level
Cited by: 23
Author(s): Gloria Ruiz-Gómez, Sarah Vogel, Stephanie Möller, M. Teresa Pisabarro, Ute Hempel
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-41564-9

Phenylpyrrole fungicides act on triosephosphate isomerase to induce methylglyoxal stress and alter hybrid histidine kinase activity
Cited by: 33
Author(s): T. Tristan Brandhorst, Iain Kean, Stephanie M. Lawry, Darin L. Wiesner, Bruce S. Klein
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-41930-7

Identification of Allosteric Inhibitors against Active Caspase-6
Cited by: 13
Author(s): Agne Tubeleviciute-Aydin, Alexandre Beautrait, Jeffrey Lynham, Gyanesh Sharma, A. Gorelik, Ludovic J. Deny, Naoto Soya, Gergely L. Lukacs, Bhushan Nagar, Anne Marinier, Andréa C. LeBlanc
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-42155-4

Structural basis of translation inhibition by cadazolid, a novel quinoxolidinone antibiotic
Cited by: 16
Author(s): Alain Scaiola, Marc Leibundgut, Daniel Boehringer, Patrick Caspers, Daniel Bur, Hans H. Locher, Georg Rueedi, Daniel Ritz
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-39491-w

Structural analyses of NudT16–ADP-ribose complexes direct rational design of mutants with improved processing of poly(ADP-ribosyl)ated proteins
Cited by: 14
Author(s): Puchong Thirawatananond, Robert Lyle McPherson, Jasmine K. Malhi, Sara Nathan, Michael J. Lambrecht, Matthew Brichacek, Paul J. Hergenrother, Anthony K.L. Leung, Sandra B. Gabelli
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-42917-0

Semisynthetic aurones inhibit tubulin polymerization at the colchicine-binding site and repress PC-3 tumor xenografts in nude mice and myc-induced T-ALL in zebrafish
Cited by: 13
Author(s): Yanqi Xie, Liliia M. Kril, Ting Yu, Wen Zhang, M. S. Frasinyuk, S. P. Bondarenko, K. M. Kondratyuk, Elizabeth S. Hausman, Zachary M. Martin, Przemysław Wyrębek, Xifu Liu, Agripina G. Deaciuc, Linda P. Dwoskin, Jing Chen, Haining Zhu, Chang‐Guo Zhan, Vitaliy M. Sviripa, Jessica S. Blackburn, David S. Watt, Chunming Liu
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-43646-0

Uncommon mutational profiles of metastatic colorectal cancer detected during routine genotyping using next generation sequencing
Cited by: 5
Author(s): Claire Franczak, Shaun M. Kandathil, Pauline Gilson, Marie Husson, Marie Rouyer, Jessica Demange, Agnès Leroux, Jean‐Louis Merlin, Alexandre Harlé
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-42650-8

Expression of Ice-Binding Proteins in Caenorhabditis elegans Improves the Survival Rate upon Cold Shock and during Freezing
Cited by: 14
Author(s): Masahiro Kawamura, Chiaki Takanashi, Akari Yamauchi, Motomichi Doi, Kazuhiro Mio, Sakae Tsuda, Y. Sasaki
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-44793-0

Molecular epidemiology, pathogenicity, and structural analysis of haemoglobin variants in the Yunnan province population of Southwestern China
Cited by: 4
Author(s): Jie Zhang, Peng Li, Yang Yang, Yuanlong Yan, Xianying Zeng, Dongmei Li, Hong Chen, Jie Su, Baosheng Zhu
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-45704-z

Characterization of metal binding of bifunctional kinase/phosphatase AceK and implication in activity modulation
Cited by: 2
Author(s): Xiaoying Zhang, Qingya Shen, Zhen Lei, Qianyi Wang, Jimin Zheng, Zongchao Jia
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-45641-x

A novel potent autophagy inhibitor ECDD-S27 targets vacuolar ATPase and inhibits cancer cell survival
Cited by: 8
Author(s): Jiraporn Paha, Phongthon Kanjanasirirat, Bamroong Munyoo, Patoomratana Tuchinda, Naravut Suvannang, Chanin Nantasenamat, Kanokthip Boonyarattanakalin, Prasat Kittakoop, Sirawit Srikor, Gunganist Kongklad, Noppawan Rangkasenee, Suradej Hongeng, Pongsak Utaisincharoen, Suparerk Borwornpinyo, Marisa Ponpuak
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-45282-0

Functional Roles of Metabolic Intermediates in Regulating the Human Mitochondrial NAD(P)+-Dependent Malic Enzyme
Cited by: 14
Author(s): Ju-Yi Hsieh, Wan-Ting Shih, Yu‐Hsuan Kuo, Guang‐Yaw Liu, Hui‐Chih Hung
Software Mentions: 1
Published: about 7 years ago

10.1128/mBio.00949-20

Molecular Insight into TdfH-Mediated Zinc Piracy from Human Calprotectin by Neisseria gonorrhoeae
Cited by: 13
Author(s): Michael T. Kammerman, Amit Bera, Runrun Wu, Simone Harrison, Cathy A. Maxwell, Karl Lundquist, Nicholas Noinaj, Walter J. Chazin, Cynthia Nau Cornelissen
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.00460-20

Convergent Evolution of Neutralizing Antibodies to Staphylococcus aureus γ-Hemolysin C That Recognize an Immunodominant Primary Sequence-Dependent B-Cell Epitope
Cited by: 4
Author(s): David Hernández, Kayan Tam, Bo Shopsin, Emily E. Radke, Karen Law, Timothy Cardozo, Victor J. Torres, Gregg J. Silverman
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.01403-20

Conditional DnaB Protein Splicing Is Reversibly Inhibited by Zinc in Mycobacteria
Cited by: 14
Author(s): Daniel F. Woods, Sweta Vangaveti, Ikechukwu Egbanum, Allison M. Sweeney, Zhong Li, Valjean R. Bacot‐Davis, Danielle S. LeSassier, Matthew Stanger, Gabrielle E. Hardison, Hongmin Li, Marlene Belfort, Christopher Lennon
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.00745-20

Structural Basis and Evolution of Glycan Receptor Specificities within the Polyomavirus Family
Cited by: 8
Author(s): L.J. Stroh, N.H. Rustmeier, Bärbel S. Blaum, Josephine Botsch, Philip Rößler, Florian Wedekink, W. Ian Lipkin, Nischay Mishra, Thilo Stehle
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.02351-20

A Key Motif in the Cholesterol-Dependent Cytolysins Reveals a Large Family of Related Proteins
Cited by: 15
Author(s): Jordan C. Evans, Bronte A. Johnstone, Sara L. Lawrence, C.J. Morton, Michelle P. Christie, Michael W. Parker, Rodney K. Tweten
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.01985-20

Targeting Methionine Synthase in a Fungal Pathogen Causes a Metabolic Imbalance That Impacts Cell Energetics, Growth, and Virulence
Cited by: 12
Author(s): Jennifer Scott, Mónica Sueiro-Olivares, B P Thornton, Rebecca A. Owens, Howbeer Muhamadali, Rachael Fortune‐Grant, Darren D Thomson, Riba Thomas, Katherine A. Hollywood, Seán Doyle, Royston Goodacre, Lydia Tabernero, Elaine Bignell, Jorge Amich
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.02431-20

Accurate Diagnosis of COVID-19 by a Novel Immunogenic Secreted SARS-CoV-2 orf8 Protein
Cited by: 57
Author(s): Xiaohui Wang, Joy Yan Lam, Wan Man Wong, Chun Kit Yuen, Jian Cai, Shannon Wing-Ngor Au, Jasper Fuk‐Woo Chan, Kelvin Kai-Wang To, Kin Hang Kok, Kwok Yung Yuen
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.01612-20

A Giant Extracellular Matrix Binding Protein of <i>Staphylococcus epidermidis</i> Binds Surface-Immobilized Fibronectin via a Novel Mechanism
Cited by: 7
Author(s): Henning Büttner, Markus Perbandt, Thomas P. Kohler, Alexey Kikhney, Manuel Wolters, Coralie Martin, Marisol Heise, Jerome Pascal Wilde, Samira Weißelberg, Anna Both, Christian Betzel, Sven Hammerschmidt, Dmitri I. Svergun, Martin Aepfelbacher, Holger Rohde
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.02045-20

Plasmodium falciparum Apicomplexan-Specific Glucosamine-6-Phosphate <i>N</i> -Acetyltransferase Is Key for Amino Sugar Metabolism and Asexual Blood Stage Development
Cited by: 5
Author(s): Jordi Chi, Marta Cova, Matilde de las Rivas, Ana María Medina, Rafael J. Borges, Pablo Leivar, Antoni Planas, Isabel Usón, R. Hurtado‐Guerrero, Luís Izquierdo
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.02312-20

Plasmodium berghei K13 Mutations Mediate <i>In Vivo</i> Artemisinin Resistance That Is Reversed by Proteasome Inhibition
Cited by: 13
Author(s): Nelson V. Simwela, Barbara H. Stokes, Dana Aghabi, Matt Bogyo, David A. Fidock, Andrew P. Waters
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.02288-20

Staphylococcal DNA Repair Is Required for Infection
Cited by: 16
Author(s): Kam Pou Ha, Rebecca S. Clarke, Gyu-Lee Kim, Jane L. Brittan, Jessica E. Rowley, Despoina A. I. Mavridou, Dane Parker, Tom Clarke, Angela H. Nobbs, Andrew M. Edwards
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.02842-20

The Key Glycolytic Enzyme Phosphofructokinase Is Involved in Resistance to Antiplasmodial Glycosides
Cited by: 6
Author(s): Gillian Fisher, Simon A. Cobbold, Andrew J. Jezewski, Emma F. Carpenter, Megan Arnold, Annie N. Cowell, Erick T. Tjhin, Kevin J. Saliba, Tina S. Skinner‐Adams, Marcus Lee, Audrey Odom John, Elizabeth A. Winzeler, Malcolm J. McConville, Sally‐Ann Poulsen, Katherine Thea Andrews
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.03012-20

Essential Role for FtsL in Activation of Septal Peptidoglycan Synthesis
Cited by: 42
Author(s): Kyung Tae Park, Shishen Du, Joe Lutkenhaus
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.02880-20

The Protein Kinase A-Dependent Phosphoproteome of the Human Pathogen Aspergillus fumigatus Reveals Diverse Virulence-Associated Kinase Targets
Cited by: 2
Author(s): E. Keats Shwab, Praveen R. Juvvadi, Greg Waitt, Shareef Shaheen, John G. Allen, Erik J. Soderblom, Benjamin G. Bobay, Yohannes G. Asfaw, M. Arthur Moseley, William J. Steinbach
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.03492-20

Resistance to a Nucleoside Analog Antiviral Drug from More Rapid Extension of Drug-Containing Primers
Cited by: 6
Author(s): Han Chen, Jessica L. Lawler, David J. Filman, James M. Hogle, Donald M. Coen
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.02705-20

ApmA Is a Unique Aminoglycoside Antibiotic Acetyltransferase That Inactivates Apramycin
Cited by: 9
Author(s): Emily Bordeleau, P.J. Stogios, E. Evdokimova, Kalinka Koteva, Alexei Savchenko, Gerard D. Wright
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.00230-21

Development of Spike Receptor-Binding Domain Nanoparticles as a Vaccine Candidate against SARS-CoV-2 Infection in Ferrets
Cited by: 37
Author(s): Young Il Kim, Do Kyun Kim, Kwang-Min Yu, Hogyu David Seo, Shin-Ae Lee, Mark Anthony B. Casel, Seung-Gyu Jang, Stephanie Kim, Wooram F. Jung, Chih‐Jen Lai, Young Ki Choi, Jae U. Jung
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.00264-21

Dimer Asymmetry and Light Activation Mechanism in <i>Brucella</i> Blue-Light Sensor Histidine Kinase
Cited by: 11
Author(s): Jimena Rinaldi, Ignacio Fernández, Heewhan Shin, Gabriela Sycz, Semini Gunawardana, Indika Kumarapperuma, Juan Manuel Aragón Paz, Lisandro H. Otero, María Laura Cerutti, Ángeles Zorreguieta, Zhong Ren, S. Klinke, Xiaojing Yang, F.A. Goldbaum
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.03149-20

Critical ACE2 Determinants of SARS-CoV-2 and Group 2B Coronavirus Infection and Replication
Cited by: 7
Author(s): Lily E. Adams, Kenneth H. Dinnon, Yixuan J. Hou, Timothy P. Sheahan, Mark T. Heise, Ralph S. Baric
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.01058-21

Phylogeny Reveals Novel HipA-Homologous Kinase Families and Toxin-Antitoxin Gene Organizations
Cited by: 10
Author(s): Kenn Gerdes, René L. Bærentsen, D.E. Brodersen
Software Mentions: 1
Published: about 5 years ago

10.1128/mBio.00557-21

<i>In Vitro</i> Viral Evolution Identifies a Critical Residue in the Alphaherpesvirus Fusion Glycoprotein B Ectodomain That Controls gH/gL-Independent Entry
Cited by: 12
Author(s): Melina Vallbracht, Henriette Lötzsch, Barbara G. Klupp, Walter Fuchs, Benjamin Vollmer, Kay Grünewald, Marija Backović, F.A. Rey, Thomas C. Mettenleiter
Software Mentions: 1
Published: about 5 years ago

10.1128/mBio.00696-21

Convalescent-Phase Sera and Vaccine-Elicited Antibodies Largely Maintain Neutralizing Titer against Global SARS-CoV-2 Variant Spikes
Cited by: 59
Author(s): Takuya Tada, Belinda M Dcosta, Marie I. Samanovic, Ramin S. Herati, Amber Cornelius, Hao Zhou, Ada Vaill, Wes Kazmierski, Mark J. Mulligan, Nathaniel R. Landau
Software Mentions: 1
Published: about 5 years ago

10.1128/mBio.00287-21

Analysis of the Evolution of Pandemic Influenza A(H1N1) Virus Neuraminidase Reveals Entanglement of Different Phenotypic Characteristics
Cited by: 10
Author(s): Meiling Dai, Wenjuan Du, Carles Martínez-Romero, Tim Leenders, Tom Wennekes, Guus F. Rimmelzwaan, Frank J. M. van Kuppeveld, Ron A. M. Fouchier, Adolfo García‐Sastre, Erik de Vries, Cornelis A. M. de Haan
Software Mentions: 1
Published: about 5 years ago

10.1128/mBio.01386-21

B.1.526 SARS-CoV-2 Variants Identified in New York City are Neutralized by Vaccine-Elicited and Therapeutic Monoclonal Antibodies
Cited by: 44
Author(s): Hao Zhou, Belinda M Dcosta, Marie I. Samanovic, Mark J. Mulligan, Nathaniel R. Landau, Takuya Tada
Software Mentions: 1
Published: almost 5 years ago

10.1128/mBio.02094-21

Regulation of the Dimerization and Activity of SARS-CoV-2 Main Protease through Reversible Glutathionylation of Cysteine 300
Cited by: 11
Author(s): David A. Davis, Haydar Bulut, Prabha Shrestha, Amulya Yaparla, Hannah K. Jaeger, Shin-ichiro Hattori, Paul T. Wingfield, John J. Mieyal, Hiroaki Mitsuya, Robert Yarchoan
Software Mentions: 1
Published: almost 5 years ago

10.1128/mBio.02231-21

A Recently Assembled Degradation Pathway for 2,3-Dichloronitrobenzene in <i>Diaphorobacter</i> sp. Strain JS3051
Cited by: 11
Author(s): Tao Li, Yi‐Zhou Gao, Jia Xu, Shuting Zhang, Yuan Guo, Jim C. Spain, Ning‐Yi Zhou
Software Mentions: 1
Published: almost 5 years ago

10.1128/mBio.01309-21

A Novel Aquaporin Subfamily Imports Oxygen and Contributes to Pneumococcal Virulence by Controlling the Production and Release of Virulence Factors
Cited by: 2
Author(s): Qingqing Hu, Huichun Tong, Jing Wang, Pupu Ge, Lin Zhu, Cuihua Liu, Jing-Ren Zhang, Xiuzhu Dong
Software Mentions: 1
Published: almost 5 years ago

10.1128/mBio.02040-21

A Fungal Secretome Adapted for Stress Enabled a Radical Wood Decay Mechanism
Cited by: 11
Author(s): Jesús D. Castaño, Jiwei Zhang, Mowei Zhou, Chia Feng Tsai, Joon‐Yong Lee, Carrie Nicora, Jonathan S. Schilling
Software Mentions: 1
Published: almost 5 years ago

10.1128/mBio.01568-21

Specificity of NifEN and VnfEN for the Assembly of Nitrogenase Active Site Cofactors in Azotobacter vinelandii
Cited by: 13
Author(s): Ana Pérez-González, Emilio Jiménez-Vicente, Jakob Gies‐Elterlein, Alvaro Salinero-Lanzarote, Zhiyong Yang, Oliver Einsle, Lance C. Seefeldt, Dennis R. Dean
Software Mentions: 1
Published: almost 5 years ago

10.1128/mSphere.00085-16

A Cell Cycle-Regulated <i>Toxoplasma</i> Deubiquitinase, TgOTUD3A, Targets Polyubiquitins with Specific Lysine Linkages
Cited by: 15
Author(s): Animesh Dhara, Anthony P. Sinai
Software Mentions: 1
Published: about 10 years ago

10.1128/mSphere.00288-16

A Highly Conserved Residue in HIV-1 Nef Alpha Helix 2 Modulates Protein Expression
Cited by: 12
Author(s): Aaron L. Johnson, Brennan S. Dirk, Mathieu Coutu, S. M. Mansour Haeryfar, Eric J. Arts, Andrés Finzi, Jimmy D. Dikeakos
Software Mentions: 1
Published: over 9 years ago

10.1128/mSphere.00372-17

Copper Chaperone CupA and Zinc Control CopY Regulation of the Pneumococcal <i>cop</i> Operon
Cited by: 19
Author(s): Miranda J. Neubert, Elizabeth A. Dahlmann, Andrew J. Ambrose, Michael D. L. Johnson
Software Mentions: 1
Published: almost 9 years ago

10.1128/mSphere.00331-18

Structure of the Recombinant <i>Neisseria gonorrhoeae</i> Adhesin Complex Protein (rNg-ACP) and Generation of Murine Antibodies with Bactericidal Activity against Gonococci
Cited by: 16
Author(s): Hannia Liliana Almonacid-Mendoza, María Victoria Humbert, Aiste Dijokaite, David W. Cleary, Yiwen Soo, Miao-Chiu Hung, Christian M. Orr, M.M. Machelett, Ivo Tews, Myron Christodoulides
Software Mentions: 1
Published: almost 8 years ago

10.1128/mSphere.00024-19

OXA-48-Mediated Ceftazidime-Avibactam Resistance Is Associated with Evolutionary Trade-Offs
Cited by: 59
Author(s): Christopher Fröhlich, Vidar Sørum, Ane Molden Thomassen, Pål Jarle Johnsen, Hanna‐Kirsti S. Leiros, Ørjan Samuelsen
Software Mentions: 1
Published: over 7 years ago

10.1128/mSphere.00442-19

Signal Sensing and Transduction Are Conserved between the Periplasmic Sensory Domains of BifA and SagS
Cited by: 2
Author(s): Jozef Dingemans, Rebecca E. Al‐Feghali, Holger Sondermann, Karin Sauer
Software Mentions: 1
Published: almost 7 years ago

10.1128/mSphere.00818-19

Puupehenone, a Marine-Sponge-Derived Sesquiterpene Quinone, Potentiates the Antifungal Drug Caspofungin by Disrupting Hsp90 Activity and the Cell Wall Integrity Pathway
Cited by: 11
Author(s): Siddharth Tripathi, Qin Feng, Li Liu, David E. Levin, Kuldeep K. Roy, Robert J. Doerksen, Scott R. Baerson, Xinling Shi, Xuewen Pan, Wenhui Xu, Xing-Cong Li, Alice M. Clark, Ameeta K. Agarwal
Software Mentions: 1
Published: over 6 years ago

10.1128/mSphere.00655-20

Interdependent YpsA- and YfhS-Mediated Cell Division and Cell Size Phenotypes in <i>Bacillus subtilis</i>
Cited by: 7
Author(s): R Brzozowski, Brooke R Tomlinson, M. Sacco, Judy J Chen, Anika N. Ali, Yu Chen, Lindsey N. Shaw, Prahathees J. Eswara
Software Mentions: 1
Published: almost 6 years ago

10.1128/mSphere.01131-20

Phosphorylation of the Canonical Histone H2A Marks Foci of Damaged DNA in Malaria Parasites
Cited by: 5
Author(s): Manish Goyal, Adina Heinberg, Vera Mitesser, Sofiya Kandelis-Shalev, Brajesh Kumar Singh, Ron Dzikowski
Software Mentions: 1
Published: over 5 years ago

10.1128/mSphere.00736-20

A Secreted NlpC/P60 Endopeptidase from Photobacterium damselae subsp. <i>piscicida</i> Cleaves the Peptidoglycan of Potentially Competing Bacteria
Cited by: 3
Author(s): Johnny Lisboa, Cassilda Pereira, Aline Rifflet, Juan Ayala, Mateus S. Terceti, Alba V Barca, Inês S. Rodrigues, Pedro José Barbosa Pereira, Carlos R. Osorio, Francisco García‐del Portillo, Ivo Gomperts Boneca, Ana do Vale, Nuno M.S. dos Santos
Software Mentions: 1
Published: over 5 years ago

10.1128/mSphere.00977-20

Comprehensive Bioinformatic Assessments of the Variability of Neisseria gonorrhoeae Vaccine Candidates
Cited by: 10
Author(s): Benjamin I. Baarda, Ryszard A. Zielke, Alaina K. Holm, Aleksandra E. Sikora
Software Mentions: 1
Published: over 5 years ago

10.1128/mSphere.00444-21

<i>Toxoplasma gondii</i> Toxolysin 4 Contributes to Efficient Parasite Egress from Host Cells
Cited by: 3
Author(s): My Hang Huynh, Marijo S. Roiko, A. da S. Gomes, Ellyn N. Schinke, Alyssa B. Schultz, Swati Agrawal, Christine A Oellig, Travis Sexton, Jessica M. Beauchamp, Julie Laliberté, Komagal Kannan Sivaraman, Louis B. Hersh, Sheena McGowan, Vern B. Carruthers
Software Mentions: 1
Published: about 5 years ago

10.1128/mSystems.00163-19

Proteomic Profiling, Transcription Factor Modeling, and Genomics of Evolved Tolerant Strains Elucidate Mechanisms of Vanillin Toxicity in Escherichia coli
Cited by: 26
Author(s): Calum A. Pattrick, Joseph P. Webb, Jeffrey Green, Roy R. Chaudhuri, Mark O. Collins, David J. Kelly
Software Mentions: 1
Published: almost 7 years ago

10.1128/mSystems.00397-19

The Formaldehyde Dehydrogenase SsFdh1 Is Regulated by and Functionally Cooperates with the GATA Transcription Factor SsNsd1 in Sclerotinia sclerotiorum
Cited by: 13
Author(s): Genglin Zhu, Gang Yu, Xianghui Zhang, Jinliang Liu, Yanhua Zhang, Jeffrey A. Rollins, Jingtao Li, Hongyu Pan
Software Mentions: 1
Published: almost 7 years ago

10.1128/mSystems.00705-19

The Remarkable Dual-Level Diversity of Prokaryotic Flagellins
Cited by: 11
Author(s): Dalong Hu, Peter R. Reeves
Software Mentions: 1
Published: over 6 years ago

10.1128/mSystems.00821-20

Struggle To Survive: the Choir of Target Alteration, Hydrolyzing Enzyme, and Plasmid Expression as a Novel Aztreonam-Avibactam Resistance Mechanism
Cited by: 20
Author(s): Ke Ma, Yu Feng, Alan McNally, Zhiyong Zong
Software Mentions: 1
Published: over 5 years ago

10.1007/s00439-020-02150-6

Ethnogeographic and inter-individual variability of human ABC transporters
Cited by: 32
Author(s): Qingyang Xiao, Yitian Zhou, Volker M. Lauschke
Software Mentions: 1
Published: over 6 years ago

10.1007/s00439-019-02081-x

The genetic landscape of the human solute carrier (SLC) transporter superfamily
Cited by: 70
Author(s): L.C. Schaller, Volker M. Lauschke
Software Mentions: 1
Published: almost 7 years ago

10.1186/1479-7364-7-10

Extrapolating the effect of deleterious nsSNPs in the binding adaptability of flavopiridol with CDK7 protein: a molecular dynamics approach
Cited by: 45
Author(s): C. George Priya Doss, N. Nagasundaram, Chiranjib Chakraborty, Luonan Chen, Hailong Zhu
Software Mentions: 1
Published: over 13 years ago

10.1186/1479-7364-6-10

Conservation of the three-dimensional structure in non-homologous or unrelated proteins
Cited by: 25
Author(s): Konstantinos Sousounis, Carl E Haney, Jian Cao, Bharath Sunchu, Panagiotis A. Tsonis
Software Mentions: 1
Published: about 14 years ago

10.1186/s40246-021-00351-2

Established and candidate transthyretin amyloidosis variants identified in the Saudi population by data mining
Cited by: 5
Author(s): Mohamed Abouelhoda, Dania Mohty, Islam Alayary, Brian F. Meyer, Stefan T. Arold, Bahaa M. Fadel, Dorota Monies
Software Mentions: 1
Published: about 5 years ago

10.1186/s40246-021-00345-0

ACER3-related leukoencephalopathy: expanding the clinical and imaging findings spectrum due to novel variants
Cited by: 1
Author(s): Ali Zare Dehnavi, Erfan Heidari, Maryam Rasulinezhad, Morteza Heidari, Mahmoud Reza Ashrafi, Mohammad Mehdi Hosseini, Fatemeh Sadeghzadeh, Mohammad‐Sadegh Fallah, Noushin Rostampour, Amir Bahraini, Masoud Garshasbi, Ali Reza Tavasoli
Software Mentions: 1
Published: about 5 years ago

10.1093/hmg/ddv181

A microfibril assembly assay identifies different mechanisms of dominance underlying Marfan syndrome, stiff skin syndrome and acromelic dysplasias
Cited by: 25
Author(s): Sacha A. Jensen, Saba Iqbal, Alicja Bulsiewicz, Penny A. Handford
Software Mentions: 1
Published: over 11 years ago

10.1093/hmg/ddu369

Functional characterization of FABP3, 5 and 7 gene variants identified in schizophrenia and autism spectrum disorder and mouse behavioral studies
Cited by: 79
Author(s): Chie Shimamoto, Tetsuo Ohnishi, Motoko Maekawa, Akïharu Watanabe, Hideki Ohba, Ryoichi Arai, Yoshimi Iwayama, Yu Hisano, Tomoko Toyota, Manabu Toyoshima, Katsuaki Suzuki, Yukihiko Shirayama, Kazuhiko Nakamura, Norio Mori, Yuji Owada, Tetsuyuki Kobayashi, Takeo Yoshikawa
Software Mentions: 1
Published: about 12 years ago

10.1093/hmg/ddu360

Phenotypic severity of homozygous GCK mutations causing neonatal or childhood-onset diabetes is primarily mediated through effects on protein stability
Cited by: 38
Author(s): Anne Raimondo, Ali J. Chakera, Soren K. Thomsen, Kevin Colclough, Amy Barrett, Elisa De Franco, Alisson Chatelas, Hüseyin Demirbilek, Teoman Akçay, Hussein Alawneh, Sarah E. Flanagan, Martijn van de Bunt, Andrew T. Hattersley, Anna L. Gloyn, Sian Ellard, Mohammad A. Abduljabbar, Mahmoud Alzyoud, Syed Aman, Louise Bath, Parijat De, Neeta Deshpande, Erdem Durmaz, Frank Eickmeier, Nancy Samir Elbarbary, Marc Fillion, Sujatha Jagadeesh, Melanie Kershaw, Waqas Imran Khan, Wojciech Młynarski, Kathryn Noyes, Catherine Peters, Nick Shaw, Irina Tiron, Doğa Türkkahraman, Lesley Turner, Khadiga Eltonbary, Bilgin Yüksel
Software Mentions: 1
Published: about 12 years ago

10.1093/hmg/ddt535

Absence of cell surface expression of human ACE leads to perinatal death
Cited by: 13
Author(s): Annie Michaud, K. Ravi Acharya, Geoffrey Masuyer, Nicole Quenech’Du, Olivier Gribouval, Vincent Morinière, Marie–Claire Gubler, Pierre Corvol
Software Mentions: 1
Published: almost 13 years ago

10.1002/humu.24210

Bi‐allelic <i>KARS1</i> pathogenic variants affecting functions of cytosolic and mitochondrial isoforms are associated with a progressive and multisystem disease
Cited by: 7
Author(s): Gerarda Cappuccio, Camilla Ceccatelli Berti, Enrico Baruffini, Jennifer Sullivan, Vandana Shashi, Tamison Jewett, Tara H. Stamper, Silvia Maitz, Francesco Canonico, Anya Revah‐Politi, Gabriel Kupchik, Kwame Anyane‐Yeboa, Vimla S. Aggarwal, Andreas Benneche, Eirik Bratland, Siren Berland, Felice D’Arco, César Augusto Pinheiro Ferreira Alves, Adeline Vanderver, Daniela Longo, Enrico Bertini, Annalaura Torella, Vincenzo Nigro, Alessandra D’Amico, Marjo S. van der Knaap, P Goffrini, Nicola Brunetti‐Pierri
Software Mentions: 1
Published: over 5 years ago

10.1002/humu.23975

Genetic and phenotypic spectrum associated with IFIH1 gain‐of‐function
Cited by: 59
Author(s): Gillian I. Rice, Sehoon Park, Francesco Gavazzi, Laura Adang, Loveline A Ayuk, Lien Van Eyck, Luis Seabra, Christophe Barrea, Roberta Battini, Alexandre Belot, Stefan Berg, Thierry Billette de Villemeur, Annette Bley, Lubov Blumkin, Odile Boespflug‐Tanguy, Tracy A Briggs, Elise Brimble, Russell C. Dale, Niklas Darín, François-Guillaume Debray, Valentina De Giorgis, Jonas Denecke, Diane Doummar, Gunilla Drake Af Hagelsrum, Despina Eleftheriou, Margherita Estienne, Elisa Fazzi, François Feillet, Jessica Galli, Nicholas Hartog, Julie Harvengt, Bénédicte Héron, Delphine Héron, Diedre A Kelly, Dorit Lev, Virginie Levrat, John H. Livingston, Itxaso Martí, Cyril Mignot, Fanny Mochel, Marie‐Christine Nouguès, Ilena Oppermann, Belén Pérez‐Dueñas, Bernt Popp, Mathieu P Rodero, Diana Rodriguez, Veronica Saletti, Cia Sharpe, Davide Tonduti, Gayatri Vadlamani, Keith Van Haren, Miguel Tomás Vila, Julie Vogt, Evangeline Wassmer, Arnaud Wiedemann, Callum Wilson, Ayelet Zerem, Christiane Zweier, Sameer M. Zuberi, Simona Orcesi, Adeline Vanderver, Sun Hur, Yanick J. Crow
Software Mentions: 1
Published: over 6 years ago

10.1002/humu.23949

Congenital myasthenic syndrome due to mutations in <i>MUSK</i> suggests that the level of MuSK phosphorylation is crucial for governing synaptic structure
Cited by: 17
Author(s): Pedro M. Rodríguez Cruz, Judy Cossins, Jonathan Cheung, Susan Maxwell, Sandeep Jayawant, Ruth Herbst, Dominic Waithe, Alexandr P. Kornev, Jackie Palace, David Beeson
Software Mentions: 1
Published: over 6 years ago

10.1038/s41396-020-00758-0

A 500-year tale of co-evolution, adaptation, and virulence: Helicobacter pylori in the Americas
Cited by: 18
Author(s): Zilia Y Muñoz-Ramirez, Ben Pascoe, Alfonso Méndez‐Tenorio, Evangelos Mourkas, Santiago Sandoval-Motta, Guillermo I. Perez-Perez, Douglas R. Morgan, Ricardo L. Domínguez, Diana Ortiz-Princz, María Eugenia Cavazza, Gifone A. Rocha, Dulcienne M. M. Queiroz, Mariana Catalano, Gerardo Zerbeto De La Palma, Cinthia G. Goldman, Alejandro Venegas, Teresa Alarcón, Mónica Oleastro, Filipa F. Vale, Karen J. Goodman, Roberto Torres, Elvire Berthenet, Matthew D. Hitchings, Martin J. Blaser, Samuel K. Sheppard, Kaisa Thorell, Javier Torres
Software Mentions: 1
Published: almost 6 years ago

10.1155/2013/185807

Molecular Characterization and Phylogenetic Analysis of a Histone-Derived Antimicrobial Peptide Teleostin from the Marine Teleost Fishes, <i>Tachysurus jella</i> and <i>Cynoglossus semifasciatus</i>
Cited by: 14
Author(s): E. R. Chaithanya, Rosamma Philip, Naveen Sathyan, Praveen Kumar
Software Mentions: 1
Published: over 13 years ago

10.5402/2012/481539

Structural Modeling and Analysis of Pregnancy-Associated Glycoprotein-1 of Buffalo (Bubalus bubalis)
Cited by: 2
Author(s): Jerome Andonissamy, SK Singh, SK Agarwal
Software Mentions: 1
Published: over 14 years ago

10.5402/2012/219656

Identification and Molecular Characterization of Molluskin, a Histone-H2A-Derived Antimicrobial Peptide from Molluscs
Cited by: 25
Author(s): Naveen Sathyan, Rosamma Philip, E. R. Chaithanya, Praveen Kumar
Software Mentions: 1
Published: almost 14 years ago

10.1155/2013/930216

Characterization of Histone H2A Derived Antimicrobial Peptides, Harriottins, from Sicklefin Chimaera <i>Neoharriotta pinnata</i> (Schnakenbeck, 1931) and Its Evolutionary Divergence with respect to CO1 and Histone H2A
Cited by: 10
Author(s): Naveen Sathyan, Rosamma Philip, E. R. Chaithanya, Praveen Kumar, V. N. Sanjeevan, I. S. Bright Singh
Software Mentions: 1
Published: about 13 years ago

10.1002/iub.2439

<scp><i>Vibrio cholerae</i></scp> biofilm scaffolding protein <scp>RbmA</scp> shows an intrinsic, phosphate‐dependent autoproteolysis activity
Cited by: 1
Author(s): M. Maestre-Reyna, Weicheng Huang, Wen‐Jin Wu, Praveen Singh, Raimo Hartmann, Po‐Hsun Wang, Cheng‐Chung Lee, Takaaki Hikima, Masaki Yamamoto, Yoshitaka Bessho, Knut Drescher, Max Tsai, Andrew H.‐J. Wang
Software Mentions: 1
Published: over 5 years ago

10.1107/S2052252514023306

Data to knowledge: how to get meaning from your result
Cited by: 12
Author(s): Helen M. Berman, Margaret Gabanyi, Colin R. Groom, John E. Johnson, Garib N. Murshudov, Robert A. Nicholls, Vijay Reddy, Torsten Schwede, Matthew D. Zimmerman, John D. Westbrook, Władek Minor
Software Mentions: 1
Published: over 11 years ago

10.1107/S2052252516002487

Structures of<i>C</i>-mannosylated anti-adhesives bound to the type 1 fimbrial FimH adhesin
Cited by: 15
Author(s): Jérôme de Ruyck, Marc F. Lensink, Julie Bouckaert
Software Mentions: 1
Published: over 10 years ago

10.1107/S2052252519015409

Structural and kinetic insights into flavin-containing monooxygenase and calponin-homology domains in human MICAL3
Cited by: 10
Author(s): Junsoo Kim, Haemin Lee, Yeon Jin Roh, Han Ul Kim, Dongsuk Shin, Sorah Kim, Jonghyeon Son, Aro Lee, Minseo Kim, Junga Park, Seong-Yun Hwang, Kyung-Hwan Kim, Yong Kwon Lee, Hyun Suk Jung, Kwang Yeon Hwang, Byeong Cheol Lee
Software Mentions: 1
Published: over 6 years ago

10.1107/S2052252520003917

A structural study of TatD from <i>Staphylococcus aureus</i> elucidates a putative DNA-binding mode of a Mg²⁺-dependent nuclease
Cited by: 3
Author(s): Kyu‐Yeon Lee, Seung‐Ho Cheon, Dong-Gyun Kim, Sang Jae Lee, Bong-Jin Lee
Software Mentions: 1
Published: over 6 years ago

10.1107/S2052252518012459

Structures of collagen IV globular domains: insight into associated pathologies, folding and network assembly
Cited by: 12
Author(s): Patricia Casino, Roberto Gozalbo-Rovira, Jesús Rodrı́guez-Dı́az, Sreedatta Banerjee, Ariel Boutaud, Vicente Rubio, Billy G. Hudson, Juan Saus, Javier Cervera, Alberto Marina
Software Mentions: 1
Published: almost 8 years ago

10.1107/S2052252520015675

Insights into the structure of mature streptavidin C1 from Streptomyces cinnamonensis reveal the self-binding of the extension C-terminal peptide to biotin-binding sites
Cited by: 2
Author(s): Byeong Jun Jeon, Sulhee Kim, Minseok Kim, Ji-Ho Lee, Beom Seok Kim, Kwang Yeon Hwang
Software Mentions: 1
Published: over 5 years ago

10.1107/S2052252515019971

Peptide binding to a bacterial signal peptidase visualized by peptide tethering and carrier-driven crystallization
Cited by: 14
Author(s): Yi Tian Ting, Patricia M. Harris, Gaëlle Batot, Margaret A. Brimble, Edward N. Baker, Paul G. Young
Software Mentions: 1
Published: over 10 years ago

10.1107/S2052252517000367

The mechanism behind the selection of two different cleavage sites in NAG-NAM polymers
Cited by: 10
Author(s): Marko Mihelič, Kristina Vlahoviček-Kahlina, M. Renko, Michael P. Williamson, Andreja Doberšek, Ajda Taler‐Verčič, Andreja Jakas, Dušan Turk
Software Mentions: 1
Published: over 9 years ago

10.1107/S2052252520011288

An automated platform for <i>in situ</i> serial crystallography at room temperature
Cited by: 6
Author(s): Zhong Ren, Cong Wang, Heewhan Shin, Sepalika Bandara, Indika Kumarapperuma, Michael Y Ren, Weijia Kang, Xiaojing Yang
Software Mentions: 1
Published: almost 6 years ago

10.1107/S2052252520009446

Protein–lipid architecture of a cholinergic postsynaptic membrane
Cited by: 18
Author(s): Nigel Unwin
Software Mentions: 1
Published: about 6 years ago

10.1107/S2052252520003632

Crystal structure of the NS3-like helicase from Alongshan virus
Cited by: 10
Author(s): Xiaopan Gao, Keqing Zhu, Justyna Aleksandra Wojdyla, Pu Chen, Bo Qin, Ziheng Li, Meitian Wang, Sheng Cui
Software Mentions: 1
Published: over 6 years ago

10.1107/S205225251901073X

Conformational characterization of full-length X-chromosome-linked inhibitor of apoptosis protein (XIAP) through an integrated approach
Cited by: 4
Author(s): Panagis Polykretis, Enrico Luchinat, Alessio Bonucci, Andrea Giachetti, Melissa A. Graewert, Dmitri I. Svergun, Lucia Banci
Software Mentions: 1
Published: almost 7 years ago

10.1107/S205225252100275X

Crystal structures of Aspergillus oryzae Rib2 deaminase: the functional mechanism involved in riboflavin biosynthesis
Cited by: 2
Author(s): Sheng-Chia Chen, Li-Ci Ye, Te-Ming Yen, Ruei-Xin Zhu, Chengyu Li, San-Chi Chang, Shwu-Jen Liaw, Chun‐Hua Hsu
Software Mentions: 1
Published: over 5 years ago

10.1107/S2052252515002146

SFX analysis of non-biological polycrystalline samples
Cited by: 6
Author(s): Tao Zhang, Shifeng Jin, Yongqi Gu, Yao He, Ming Li, Li Yang, Hong-Yi Fan
Software Mentions: 1
Published: over 11 years ago

10.1107/S2052252514016741

New structural forms of a mycobacterial adenylyl cyclase Rv1625c
Cited by: 6
Author(s): D.V. Barathy, Rohini Mattoo, Sandhya S. Visweswariah, K. Suguna
Software Mentions: 1
Published: almost 12 years ago

10.1107/S205225251901707X

Structural insights into conformational switching in latency-associated peptide between transforming growth factor β-1 bound and unbound states
Cited by: 5
Author(s): Timothy R. Stachowski, M. Elizabeth Snell, Edward H. Snell
Software Mentions: 1
Published: over 6 years ago

10.1107/S2052252520000986

Structure and mechanism of copper–carbonic anhydrase II: a nitrite reductase
Cited by: 15
Author(s): Jacob T. Andring, Chae Un Kim, Robert McKenna
Software Mentions: 1
Published: over 6 years ago

10.1107/S2052252517007527

Active-site protein dynamics and solvent accessibility in native<i>Achromobacter cycloclastes</i>copper nitrite reductase
Cited by: 10
Author(s): Kakali Sen, Sam Horrell, D. Kekilli, Chin W. Yong, Thomas W. Keal, Hakan Atakişi, David Moreau, Robert Thorne, Michael A. Hough, R.W. Strange
Software Mentions: 1
Published: about 9 years ago

10.1107/S2052252521004826

The mechanism driving a solid–solid phase transition in a biomacromolecular crystal
Cited by: 2
Author(s): Saminathan Ramakrishnan, Jason R. Stagno, William F. Heinz, Xiaobing Zuo, Ping Yü, Yun‐Xing Wang
Software Mentions: 1
Published: about 5 years ago

10.1107/S2052252515000238

Structure of a 13-fold superhelix (almost) determined from first principles
Cited by: 4
Author(s): Guillaume A. Schoch, Massimo Sammito, Claudia Millán, Isabel Usón, M.G. Rudolph
Software Mentions: 1
Published: over 11 years ago