10.1016/j.jbc.2021.100492

Structure of 3-mercaptopropionic acid dioxygenase with a substrate analog reveals bidentate substrate binding at the iron center
Cited by: 10
Author(s): Nicholas J York, Molly M. Lockart, Sinjinee Sardar, Nimesh Khadka, Wuxian Shi, Ronald E. Stenkamp, Jianye Zhang, Philip D. Kiser, Brad S. Pierce
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100458

Ca2+-saturated calmodulin binds tightly to the N-terminal domain of A-type fibroblast growth factor homologous factors
Cited by: 9
Author(s): Ryan Mahling, Cade R. Rahlf, Samuel C. Hansen, Matthew R. Hayden, Madeline A. Shea
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100545

TGF-β-induced cell motility requires downregulation of ARHGAPs to sustain Rac1 activity
Cited by: 3
Author(s): Mitsuyoshi Motizuki, Daizo Koinuma, Takashi Yokoyama, Yoshio Itoh, Chiho Omata, Kohei Miyazono, Masao Saitoh, Keiji Miyazawa
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100612

Functional mechanisms of MYRF DNA-binding domain mutations implicated in birth defects
Cited by: 7
Author(s): Chuandong Fan, Hongjoo An, Mohamed Sharif, Dongkyeong Kim, Yungki Park
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.36768

Depleting Trim28 in adult mice is well tolerated and reduces levels of α-synuclein and tau
Cited by: 39
Author(s): Maxime W.C. Rousseaux, Jean‐Pierre Revelli, Gabriel E. Vázquez-Vélez, Ji-Yoen Kim, Evelyn Craigen, Kristyn Gonzales, Jaclyn Beckinghausen, Huda Y. Zoghbi
Software Mentions: 1
Published: about 8 years ago

10.18632/oncotarget.19323

Understanding the mechanism of binding between Gab2 and the C terminal SH3 domain from Grb2
Cited by: 8
Author(s): Angelo Toto, Daniela Bonetti, Alfonso De Simone, Stefano Gianni
Software Mentions: 1
Published: about 9 years ago

10.1016/j.jbc.2021.100693

Intrinsically disordered substrates dictate SPOP subnuclear localization and ubiquitination activity
Cited by: 13
Author(s): Grace A. Usher, Nafiseh Sabri, Roman Rohac, Amie K. Boal, Tanja Mittag, Scott A. Showalter
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.59081

Intracellular complexities of acquiring a new enzymatic function revealed by mass-randomisation of active-site residues
Cited by: 7
Author(s): Kelsi R Hall, Katherine J Robins, Elizabeth Williams, Michelle H. Rich, Mark J. Calcott, Janine N. Copp, Rory F. Little, Ralf Schwörer, Gary B. Evans, Wayne M. Patrick, David F. Ackerley
Software Mentions: 1
Published: over 5 years ago

10.3390/biom11060807

Activation of Anopheles stephensi Pantothenate Kinase and Coenzyme A Biosynthesis Reduces Infection with Diverse Plasmodium Species in the Mosquito Host
Cited by: 3
Author(s): Raquel M. Simão-Gurge, Neha Thakre, Jessica Strickland, Jun Isoe, Lillian R. Delacruz, Brandi K. Torrevillas, Anna Maria Meyer Maciel Rodríguez, Michael A. Riehle, Shirley Luckhart
Software Mentions: 1
Published: about 5 years ago

10.1016/j.jbc.2021.100749

Moving beyond static snapshots: Protein dynamics and the Protein Data Bank
Cited by: 28
Author(s): Mitchell D. Miller, G.N. Phillips
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100715

Regulation of tau internalization, degradation, and seeding by LRP1 reveals multiple pathways for tau catabolism
Cited by: 42
Author(s): Joanna M. Cooper, Aurélien Lathuilière, Mary Migliorini, Allison L. Arai, Mashhood Wani, Simon Dujardin, Selen C. Muratoglu, Bradley T. Hyman, Dudley K. Strickland
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100658

Molecular basis for diaryldiamine selectivity and competition with tRNA in a type 2 methionyl-tRNA synthetase from a Gram-negative bacterium
Cited by: 4
Author(s): Gustavo Fernando Mercaldi, Maxuel O. Andrade, Jackeline de Lima Zanella, Artur T. Cordeiro, Celso Eduardo Benedetti
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100758

Structural and functional analysis of lignostilbene dioxygenases from Sphingobium sp. SYK-6
Cited by: 7
Author(s): Eugene Kuatsjah, Anson Chan, Rui Katahira, Stefan J. Haugen, Gregg T. Beckham, M.E.P. Murphy, Lindsay D. Eltis
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100772

Crystal structure and mutational analysis of the human TRIM7 B30.2 domain provide insights into the molecular basis of its binding to glycogenin-1
Cited by: 5
Author(s): Christian J. Muñoz Sosa, Federico M. Issoglio, M.E. Carrizo
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.52978

C-mannosylation supports folding and enhances stability of thrombospondin repeats
Cited by: 57
Author(s): Aleksandra Shcherbakova, Matthias Preller, Manuel H. Taft, Jordi Pujols, Salvador Ventura, Birgit Tiemann, Falk F. R. Buettner, Hans Bakker
Software Mentions: 1
Published: over 6 years ago

10.1016/j.jbc.2021.100798

Functional impact of intramolecular cleavage and dissociation of adhesion G protein–coupled receptor GPR133 (ADGRD1) on canonical signaling
Cited by: 19
Author(s): Joshua D. Frenster, Gabriele Stephan, Niklas Ravn-Boess, Devin Bready, Jordan Wilcox, Bjoern Kieslich, Caroline Wilde, Norbert Sträter, Giselle R. Wiggin, Ines Liebscher, Torsten Schöneberg, Dimitris G. Placantonakis
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100829

Long-range allostery mediates cooperative adenine nucleotide binding by the Ski2-like RNA helicase Brr2
Cited by: 2
Author(s): Eva Absmeier, Karen Vester, Tahereh Ghane, Dmitry Burakovskiy, Pohl Milón, Petra Imhof, Marina V. Rodnina, K.F. Santos, Markus C. Wahl
Software Mentions: 1
Published: about 5 years ago

10.18632/oncotarget.20915

Virtual screening approach to identifying influenza virus neuraminidase inhibitors using molecular docking combined with machine-learning-based scoring function
Cited by: 37
Author(s): Li Zhang, Haixin Ai, Shimeng Li, Mengyuan Qi, Zhao Jian, Qi Zhao, Hongsheng Liu
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.jbc.2021.100842

Molecular chaperone RAP interacts with LRP1 in a dynamic bivalent mode and enhances folding of ligand-binding regions of other LDLR family receptors
Cited by: 4
Author(s): Ekaterina Marakasova, Philip Olivares, Elena Karnaukhova, Haarin Chun, Nancy Hernandez, James H Kurasawa, Gabriela U. Hassink, Svetlana A Shestopal, Dudley K. Strickland, Andrey G. Sarafanov
Software Mentions: 1
Published: about 5 years ago

10.1098/rsob.120016

Structure and function of FusB: an elongation factor G-binding fusidic acid resistance protein active in ribosomal translocation and recycling
Cited by: 26
Author(s): Xiaohu Guo, Kristin Peisker, Kristina Bäckbro, Yang Chen, Ravi Kiran Koripella, Chandra Sekhar Mandava, Suparna Sanyal, M. Selmer
Software Mentions: 1
Published: over 14 years ago

10.7554/eLife.24560

Evolution of an intricate J-protein network driving protein disaggregation in eukaryotes
Cited by: 60
Author(s): Nadinath B. Nillegoda, Antonia Stank, Duccio Malinverni, Niels Alberts, Anna Szlachcic, Alessandro Barducci, Paolo De Los Rios, Rebecca C. Wade, Bernd Bukau
Software Mentions: 1
Published: about 9 years ago

10.1016/j.jbc.2021.100899

Regulation of a pentameric ligand-gated ion channel by a semiconserved cationic lipid-binding site
Cited by: 11
Author(s): Akshay Sridhar, Sarah C. R. Lummis, Diletta Pasini, Aujan Mehregan, Marijke Brams, Kumiko Kambara, Daniel Bertrand, Erik Lindahl, Rebecca J. Howard, Chris Ulens
Software Mentions: 1
Published: about 5 years ago

10.3390/biom10010072

Kinetic, Thermodynamic, and Crystallographic Studies of 2-Triazolylthioacetamides as Verona Integron-Encoded Metallo-β-Lactamase 2 (VIM-2) Inhibitor
Cited by: 7
Author(s): Xiang Yang, Yuejuan Zhang, Ying Ge, Yajun Zhou, Cheng Chen, Weixiao Yuan Wahlgren, Xiangshi Tan, Xi Chen, Ke‐Wu Yang
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.21822

Canis familiaris allergen Can f 6: expression, purification and analysis of B-cell epitopes in Chinese dog allergic children
Cited by: 7
Author(s): Yujie Wang, Lin Li, Weijuan Song, Yanjun Zhou, Mengda Cao, Xianbo Zuo, Ji‐Fu Wei
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.jbc.2021.100928

GSK137, a potent small-molecule BCL6 inhibitor with in vivo activity, suppresses antibody responses in mice
Cited by: 9
Author(s): Andrew C. Pearce, Mark J. Bamford, Ruth Barber, Angela Bridges, M.A. Convery, Constantinos Demetriou, Siân Evans, Thomas Gobbetti, David Hirst, Duncan S. Holmes, Jonathan P. Hutchinson, Sandrine Jayne, Larissa Lezina, Michael T. McCabe, Cassie Messenger, J. Morley, Melissa C. Musso, Paul Scott‐Stevens, Ana Sousa Manso, J. A. Schofield, Tom Slocombe, Don O. Somers, Ann L. Walker, Anastasia Wyce, Xiping Zhang, Simon D. Wagner
Software Mentions: 1
Published: about 5 years ago

10.1016/j.jbc.2021.100966

Structural details of monoclonal antibody m971 recognition of the membrane-proximal domain of CD22
Cited by: 7
Author(s): June Ereño‐Orbea, Xianglei Liu, Taylor Sicard, Iga Kucharska, Wei Li, Dorota Borovsky, Hong Cui, Feng Yang, Dimiter S. Dimitrov, Jean-Philippe Julien
Software Mentions: 1
Published: about 5 years ago

10.1016/j.jbc.2021.100981

Sequence variation in the β7–β8 loop of bacterial class A sortase enzymes alters substrate selectivity
Cited by: 10
Author(s): Isabel M. Piper, Sarah A. Struyvenberg, Jordan D. Valgardson, D. Alex Johnson, Melody Gao, Kerrylyn Johnston, Justin E. Svendsen, Hanna M. Kodama, Kelli L. Hvorecny, John M. Antos, J.F. Amacher
Software Mentions: 1
Published: about 5 years ago

10.18632/oncotarget.20556

Inhibition of pressure-activated cancer cell adhesion by FAK-derived peptides
Cited by: 5
Author(s): Bixi Zeng, Dinesh Devadoss, Shouye Wang, Emilie E. Vomhof-DeKrey, Leslie A. Kuhn, Marc D. Basson
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.02030

Robust and accurate prediction of residue–residue interactions across protein interfaces using evolutionary information
Cited by: 564
Author(s): С. Г. Овчинников, Hetunandan Kamisetty, David Baker
Software Mentions: 1
Published: over 12 years ago

10.7554/eLife.40486

Structures of translationally inactive mammalian ribosomes
Cited by: 77
Author(s): Alan Brown, M.R. Baird, M.C.J. Yip, J. Murray, Sichen Shao
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.jbc.2021.101028

Minimal protein-only RNase P structure reveals insights into tRNA precursor recognition and catalysis
Cited by: 8
Author(s): Takamasa Teramoto, Takeshi Koyasu, Naruhiko Adachi, Masato Kawasaki, Toshio Moriya, T. Numata, Toshiya Senda, Yoshimitsu Kakuta
Software Mentions: 1
Published: almost 5 years ago

10.3390/biom9090508

Mutational Analysis of a Highly Conserved PLSSMXP Sequence in the Small Subunit of Bacillus licheniformis γ-Glutamyltranspeptidase
Cited by: 3
Author(s): Meng-Chun Chi, Huei-Fen Lo, Min-Guan Lin, Yiyu Chen, Tzu-Fan Wang, Long-Liu Lin
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.01632

Acetylation of histone H3 at lysine 64 regulates nucleosome dynamics and facilitates transcription
Cited by: 99
Author(s): Vincenzo Di Cerbo, Fabio Mohn, Daniel P. Ryan, Emilie Montellier, Salim Kacem, Philipp Tropberger, Eleni Kallis, Monika Holzner, Leslie Hoerner, Angelika Feldmann, Florian Richter, Andrew J. Bannister, Gerhard Mittler, Jens Michaelis, Saadi Khochbin, Robert Feil, Dirk Schuebeler, Tom Owen-Hughes, Sylvain Daujat, Robert Schneider
Software Mentions: 1
Published: over 12 years ago

10.1016/j.jbc.2021.101039

Disease-associated mutations impacting BC-loop flexibility trigger long-range transthyretin tetramer destabilization and aggregation
Cited by: 7
Author(s): Sebastián Esperante, Nathalia Varejão, Francisca Pinheiro, Ricardo Sant’Anna, Juan Román Luque‐Ortega, Carlos Alfonso, Valentina Sora, Elena Papaleo, Germán Rivas, David Reverter, Salvador Ventura
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.jbc.2021.101069

A three-pocket model for substrate coordination and selectivity by the nucleotide sugar transporters SLC35A1 and SLC35A2
Cited by: 2
Author(s): Danyang Li, Somshuvra Mukhopadhyay
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.jbc.2021.101095

PROFICS: A bacterial selection system for directed evolution of proteases
Cited by: 2
Author(s): Christina Kröß, Petra Engele, Bernhard Sprenger, Andreas Fischer, Nico Lingg, Magdalena Baier, Christoph Öhlknecht, Bettina Lier, Chris Oostenbrink, Monika Cserjan‐Puschmann, Gerald Striedner, Alois Jungbauer, Rainer Schneider
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.jbc.2021.101084

Structural and functional variation of chitin-binding domains of a lytic polysaccharide monooxygenase from Cellvibrio japonicus
Cited by: 11
Author(s): Eva Madland, Zarah Forsberg, Yong Wang, Kresten Lindorff‐Larsen, Axel Niebisch, Jan Modregger, Vincent G. H. Eijsink, Finn Lillelund Aachmann, Gastón Courtade
Software Mentions: 1
Published: almost 5 years ago

10.3390/biom10121682

S-adenosyl-l-homocysteine Hydrolase: A Structural Perspective on the Enzyme with Two Rossmann-Fold Domains
Cited by: 8
Author(s): Krzysztof Brzeziński
Software Mentions: 1
Published: over 5 years ago

10.1007/s00775-018-1575-3

On how the binding cavity of AsqJ dioxygenase controls the desaturation reaction regioselectivity: a QM/MM study
Cited by: 26
Author(s): Zuzanna Wojdyła, Tomasz Borowski
Software Mentions: 1
Published: about 8 years ago

10.1007/s00775-018-1586-0

Preparation and characterization of metal-substituted carotenoid cleavage oxygenases
Cited by: 10
Author(s): Xuewu Sui, Erik R. Farquhar, Hannah Hill, Johannes von Lintig, Wuxian Shi, Philip D. Kiser
Software Mentions: 1
Published: about 8 years ago

10.1007/s00775-018-1583-3

Ether cross-link formation in the R2-like ligand-binding oxidase
Cited by: 8
Author(s): Julia J. Griese, Rui M. Branca, Vivek Srinivas, Martin Högbom
Software Mentions: 1
Published: about 8 years ago

10.1155/2021/6687589

Antitumor Effect of Inula viscosa Extracts on DMBA-Induced Skin Carcinoma Are Mediated by Proteasome Inhibition
Cited by: 11
Author(s): Ouadie Mohamed El Yaagoubi, Ayoub Lahmadi, Abdelhakim Bouyahya, Fadi Hassan, Hamid Samaki, Saïd El Antri, Souad Aboudkhil
Software Mentions: 1
Published: over 5 years ago

10.1007/s00775-019-01703-z

Redox-induced structural changes in the di-iron and di-manganese forms of Bacillus anthracis ribonucleotide reductase subunit NrdF suggest a mechanism for gating of radical access
Cited by: 9
Author(s): K. Grave, Wietske Lambert, Gustav Berggren, Julia J. Griese, M.D. Bennett, D.T. Logan, Martin Högbom
Software Mentions: 1
Published: about 7 years ago

10.1007/s00775-020-01759-2

Distinctive structural properties of THB11, a pentacoordinate Chlamydomonas reinhardtii truncated hemoglobin with N- and C-terminal extensions
Cited by: 2
Author(s): Dennis Huwald, Sabrina Duda, Raphael Gasper, V. Oliéric, Eckhard Hofmann, Anja Hemschemeier
Software Mentions: 1
Published: over 6 years ago

10.1007/s00775-020-01782-3

The Bacillus anthracis class Ib ribonucleotide reductase subunit NrdF intrinsically selects manganese over iron
Cited by: 14
Author(s): K. Grave, Julia J. Griese, Gustav Berggren, M.D. Bennett, Martin Högbom
Software Mentions: 1
Published: over 6 years ago

10.1007/s00775-020-01790-3

Metalation: nature’s challenge in bioinorganic chemistry
Cited by: 12
Author(s): Nigel J. Robinson, Arthur Glasfeld
Software Mentions: 1
Published: over 6 years ago

10.1007/s00775-020-01784-1

A traffic light enzyme: acetate binding reversibly switches chlorite dismutase from a red- to a green-colored heme protein
Cited by: 2
Author(s): Durga Mahor, Julia Püschmann, Menno van den Haak, Pepijn J. Kooij, David L. J. van Den Ouden, Marc J. F. Strampraad, Bérnard Srour, Peter‐Leon Hagedoorn
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.55143

CRISPR-Cas12a exploits R-loop asymmetry to form double-strand breaks
Cited by: 64
Author(s): Joshua C Cofsky, Deepti Karandur, Carolyn J Huang, Isaac P. Witte, John Kuriyan, Jennifer A. Doudna
Software Mentions: 1
Published: about 6 years ago

10.3390/biom11030414

Trehalose Restrains the Fibril Load towards α-Lactalbumin Aggregation and Halts Fibrillation in a Concentration-Dependent Manner
Cited by: 10
Author(s): Sania Bashir, Ishfaq Ahmad Ahanger, Anas Shamsi, Mohamed F. Alajmi, Afzal Hussain, Hani Choudhry, Faizan Ahmad, Md. Imtaiyaz Hassan, Asimul Islam
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1008190

DNA replication protein Cdc45 directly interacts with PCNA via its PIP box in Leishmania donovani and the Cdc45 PIP box is essential for cell survival
Cited by: 5
Author(s): Arti Yadav, Varshni Sharma, Jyoti Pal, Pallavi Gulati, Manisha Goel, Udita Chandra, Neelam Bansal, Swati Saha
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.ppat.1008647

Engineered receptors for human cytomegalovirus that are orthogonal to normal human biology
Cited by: 10
Author(s): Jihye Park, Kevin S. Gill, Ali Asghar Aghajani, Jeremiah D. Heredia, Hannah Choi, Adam Oberstein, Erik Procko
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.27451

Transcription factor clusters regulate genes in eukaryotic cells
Cited by: 82
Author(s): Adam J. M. Wollman, Sviatlana Shashkova, Erik Hedlund, Rosmarie Friemann, Stefan Hohmann, Mark C. Leake
Software Mentions: 1
Published: almost 9 years ago

10.18632/oncotarget.21416

A systematic assessment of chemical, genetic, and epigenetic factors influencing the activity of anticancer drug KP1019 (FFC14A)
Cited by: 20
Author(s): Upendarrao Golla, Swati Swagatika, Sakshi Chauhan, Raghuvir Singh Tomar
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.ppat.1008702

Dissecting distinct proteolytic activities of FMDV Lpro implicates cleavage and degradation of RLR signaling proteins, not its deISGylase/DUB activity, in type I interferon suppression
Cited by: 23
Author(s): Lenneke de Visser, Chiara Aloise, Kirby N. Swatek, Gisselle N. Medina, Karin M. Olek, Huib H. Rabouw, Raoul J. de Groot, Martijn A. Langereis, Teresa de los Santos, David Komander, Tim Skern, Frank J. M. van Kuppeveld
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.ppat.1008743

A cross-reactive antibody protects against Ross River virus musculoskeletal disease despite rapid neutralization escape in mice
Cited by: 8
Author(s): Julie M. Fox, Ling Huang, Stephen Tahan, Laura A. Powell, James E. Crowe, David Wang, Michael S. Diamond
Software Mentions: 1
Published: about 6 years ago

10.18632/oncotarget.22439

Pharmacologic characterization of SHR8443, a novel dual inhibitor of phosphatidylinositol 3-kinase and mammalian target of rapamycin
Cited by: 6
Author(s): Conghua Xie, Xiangling Chen, Mingyue Zheng, Xiaohong Liu, Hongbin Wang, Liguang Lou
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1008773

NS5-V372A and NS5-H386Y variations are responsible for differences in interferon α/β induction and co-contribute to the replication advantage of Japanese encephalitis virus genotype I over genotype III in ducklings
Cited by: 17
Author(s): Chenxi Li, Di Di, Hui Huang, Xin Wang, Qiqi Xia, Xiaochun Ma, Ke Liu, Beibei Li, Donghua Shao, Yafeng Qiu, Zongjie Li, Jianchao Wei, Zhiyong Ma
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms13010879

Molecular Cloning, Characterization and Predicted Structure of a Putative Copper-Zinc SOD from the Camel, Camelus dromedarius
Cited by: 7
Author(s): Farid S. Ataya, Dalia Fouad, Ebtsam Al-Olayan, Ajamaluddin Malik
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.ppat.1008857

Emergence of genotype C1 Enterovirus A71 and its link with antigenic variation of virus in Taiwan
Cited by: 12
Author(s): Kuan Ying A. Huang, Peng Huang, Yhu Chering Huang, Shu Yang, Kuo Chien Tsao, Cheng Hsun Chiu, Shin Ru Shih, Tzou Yien Lin
Software Mentions: 1
Published: almost 6 years ago

10.3390/biom11040533

Structure and Dynamics of an Archeal Monoglyceride Lipase from Palaeococcus ferrophilus as Revealed by Crystallography and In Silico Analysis
Cited by: 1
Author(s): Geoffray Labar, Nathalie Brandt, Amaury Flaba, Johan Wouters, Laurence Leherte
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1008943

Convergent structural features of respiratory syncytial virus neutralizing antibodies and plasticity of the site V epitope on prefusion F
Cited by: 5
Author(s): Wayne Harshbarger, Sai Tian, Newton Wahome, Ankita Balsaraf, Deep Bhattacharya, Desheng Jiang, R. Pandey, Kunal Tungare, Kristian Friedrich, N. Mehzabeen, Marco Biancucci, Diana Chinchilla-Olszar, Corey P. Mallett, Ying Huang, Zihao Wang, Matthew J. Bottomley, E. Malito, Sumana Chandramouli
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.ppat.1009038

Tick-transmitted thogotovirus gains high virulence by a single MxA escape mutation in the viral nucleoprotein
Cited by: 6
Author(s): Jonas Fuchs, Alexander Oschwald, Laura Graf, Georg Kochs
Software Mentions: 1
Published: over 5 years ago

10.3390/biom10121631

Structure and Characterization of Phosphoglucomutase 5 from Atlantic and Baltic Herring—An Inactive Enzyme with Intact Substrate Binding
Cited by: 3
Author(s): Robert Gustafsson, Ulrich Eckhard, Weihua Ye, Erik D Enbody, Mats E. Pettersson, Per Jemth, Leif Andersson, M. Selmer
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009100

Structural basis of RNA recognition by the SARS-CoV-2 nucleocapsid phosphoprotein
Cited by: 166
Author(s): Dhurvas Chandrasekaran Dinesh, Dominika Chalupská, Jan Šilhán, Eliška Koutná, Radim Nencka, Václav Veverka, Evžen Bouřa
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009169

Rationally designed Human Cytomegalovirus gB nanoparticle vaccine with improved immunogenicity
Cited by: 11
Author(s): Michela Perotti, Jessica Marcandalli, Davide Demurtas, Federica Sallusto, Laurent Perez
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009222

A novel sialic acid-binding adhesin present in multiple species contributes to the pathogenesis of Infective endocarditis
Cited by: 9
Author(s): Meztlli O. Gaytán, Anirudh Singh, Shireen A. Woodiga, Surina Patel, Seon-Sook An, Arturo Vera‐Ponce de León, Sean McGrath, Anthony R. Miller, Jocelyn M. Bush, Mark van der Linden, Vincent Magrini, Richard K. Wilson, Todd Kitten, Serina King
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009244

N-Glycans and sulfated glycosaminoglycans contribute to the action of diverse Tc toxins on mammalian cells
Cited by: 7
Author(s): Nan Song, Lihong Chen, Xingmei Ren, Nicholas R. Waterfield, Jian Yang, Guowei Yang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009102

Genome-wide dissection reveals diverse pathogenic roles of bacterial Tc toxins
Cited by: 18
Author(s): Nan Song, Lihong Chen, Zhemin Zhou, Xingmei Ren, Bo Liu, Siyu Zhou, Caihong Wang, Yun Wu, Nicholas R. Waterfield, Jian Yang, Guowei Yang
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.22797

Assessment of antimicrobial and wound healing effects of Brevinin-2Ta against the bacterium<i>Klebsiella pneumoniae</i>in dermally-wounded rats
Cited by: 32
Author(s): Siqin Liu, Qilin Long, Yang Xu, Jun Wang, Zhongwei Xu, Lei Wang, Mei Zhou, Yuxin Wu, Christopher Shaw
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1009407

A cross-neutralizing antibody between HIV-1 and influenza virus
Cited by: 19
Author(s): Chang-Chun David Lee, Yasunori Watanabe, Nicholas C. Wu, Julianna Han, Sonu Kumar, Tossapol Pholcharee, Gemma E. Seabright, Joel D. Allen, Chih-Wei Lin, Ji-Rong Yang, Ming‐Tsan Liu, Chung‐Yi Wu, Andrew B. Ward, Max Crispin, Ian A. Wilson
Software Mentions: 1
Published: over 5 years ago

10.3390/biom11040518

Allosteric Kinase Inhibitors Reshape MEK1 Kinase Activity Conformations in Cells and In Silico
Cited by: 4
Author(s): Jakob Fleischmann, Andreas Feichtner, Louis De Falco, Valentina Kugler, Selina Schwaighofer, Roland G. Huber, Eduard Stefan
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms130810067

2,3-Dihydro-1H-cyclopenta[b]quinoline Derivatives as Acetylcholinesterase Inhibitors—Synthesis, Radiolabeling and Biodistribution
Cited by: 24
Author(s): Paweł Szymański, Alice Lázníčková, Milan Lázníček, Marek Bajda, Barbara Malawska, Magdalena Markowicz, Elżbieta Mikiciuk-Olasik
Software Mentions: 1
Published: about 14 years ago

10.3390/ijms131216899

Electrochemical Characterization of Escherichia coli Adaptive Response Protein AidB
Cited by: 6
Author(s): Michael J. Hamill, Marco Jost, Cintyu Wong, Nicholas C. Bene, Catherine L. Drennan, Sean J. Elliott
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.ppat.1009642

Structurally distinct external solvent-exposed domains drive replication of major human prions
Cited by: 5
Author(s): Mohammad Khursheed Siddiqi, Chae Kim, Tracy Haldiman, Miroslava Kacirova, Benlian Wang, Jen Bohon, Mark R. Chance, Janna Kiselar, Jiri Safar
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009624

Structural and genetic convergence of HIV-1 neutralizing antibodies in vaccinated non-human primates
Cited by: 2
Author(s): Fangping Cai, Wei‐Hung Chen, Weimin Wu, Julia A. Jones, Misook Choe, Neelakshi Gohain, Xiaoying Shen, Celia C. LaBranche, Amanda Eaton, Laura L. Sutherland, Esther M. Lee, Giovanna Hernandéz, Nelson R. Wu, Richard M. Scearce, Michael S. Seaman, M. Anthony Moody, Sampa Santra, Kevin Wiehe, Georgia D. Tomaras, Kshitij Wagh, Bette Korber, Mattia Bonsignori, David C. Montefiori, Barton F. Haynes, Natalia de Val, Michael Joyce, Kevin O. Saunders
Software Mentions: 1
Published: about 5 years ago

10.3390/biom10050767

Structure of the Hydrophobic Core Determines the 3D Protein Structure—Verification by Single Mutation Proteins
Cited by: 20
Author(s): Mateusz Banach, Piotr Fabian, Katarzyna Stąpor, Leszek Konieczny, And Irena Roterman
Software Mentions: 1
Published: over 6 years ago

10.3390/biom10020266

Structure-Based Virtual Screening of Pseudomonas aeruginosa LpxA Inhibitors using Pharmacophore-Based Approach
Cited by: 8
Author(s): Baki Vijaya Bhaskar, Tirumalasetty Muni Chandra Babu, Aluru Rammohan, Gui Yu Zheng, Grigory V. Zyryanov, Wei Gu
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms14011667

Crystal Structure of Dimeric Flavodoxin from Desulfovibrio gigas Suggests a Potential Binding Region for the Electron-Transferring Partner
Cited by: 11
Author(s): Yin-Cheng Hsieh, Tze Shyang Chia, Hoong‐Kun Fun, Chun‐Jung Chen
Software Mentions: 1
Published: over 13 years ago

10.3390/biom10030434

Improved Protocol for the Production of the Low-Expression Eukaryotic Membrane Protein Human Aquaporin 2 in Pichia pastoris for Solid-State NMR
Cited by: 5
Author(s): Rachel Munro, Jeffrey de Vlugt, Vladimir Ladizhansky, Leonid S. Brown
Software Mentions: 1
Published: over 6 years ago

10.3390/biom7040072

Peptidylprolyl Isomerases as In Vivo Carriers for Drugs That Target Various Intracellular Entities
Cited by: 1
Author(s): Andrzej Gałat
Software Mentions: 1
Published: almost 9 years ago

10.1007/s12104-015-9606-2

Resonance assignment of PsbP: an extrinsic protein from photosystem II of Spinacia oleracea
Cited by: 2
Author(s): Adriana Rathner, Kousik Chandra, Petr Rathner, Michaela Horničáková, Judith Schlagnitweit, Jaroslava Kohoutová, Rüdiger Ettrich, Norbert Müller
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.ppat.1009543

Structurally related but genetically unrelated antibody lineages converge on an immunodominant HIV-1 Env neutralizing determinant following trimer immunization
Cited by: 5
Author(s): Safia Aljedani, Tyler Liban, Karen Tran, Ganesh E. Phad, Suruchi Singh, Viktoriya Dubrovskaya, Pradeepa Pushparaj, Paola Martinez-Murillo, Justas Rodarte, Alexander Mileant, Vidya Mangala Prasad, Rachel Kinzelman, Sijy O’Dell, John R. Mascola, Kelly K. Lee, Gunilla B. Karlsson Hedestam, Richard T. Wyatt, Marie Pancera
Software Mentions: 1
Published: almost 5 years ago

10.1186/1757-5036-2-2

An effective all-atom potential for proteins
Cited by: 64
Author(s): Anders Irbäck, Simon Mitternacht, Sandipan Mohanty
Software Mentions: 1
Published: over 17 years ago

10.1155/2017/4313561

Chiglitazar Preferentially Regulates Gene Expression via Configuration-Restricted Binding and Phosphorylation Inhibition of PPAR<i>γ</i>
Cited by: 24
Author(s): Desi Pan, Wei Wang, Nansong Liu, Qian‐Jiao Yang, Kun Zhang, Jing-Zhong Zhu, Shan Song, Zhibin Li, Zhiqiang Ning, Laiqiang Huang, Xianping Lu
Software Mentions: 1
Published: over 9 years ago

10.1155/2020/9657380

The PPAR<i>Ω</i>Pocket: Renewed Opportunities for Drug Development
Cited by: 9
Author(s): Åsmund Kaupang, Trond Vidar Hansen
Software Mentions: 1
Published: about 6 years ago

10.3390/polym10060615

Modulation of the Catalytic Properties of Lipase B from Candida antarctica by Immobilization on Tailor-Made Magnetic Iron Oxide Nanoparticles: The Key Role of Nanocarrier Surface Engineering
Cited by: 18
Author(s): Mario Viñambres, Marco Filice, Marzia Marciello
Software Mentions: 1
Published: about 8 years ago

10.3390/polym9090454

To Tie or Not to Tie? That Is the Question
Cited by: 38
Author(s): Paweł Dąbrowski-Tumański, Joanna I. Sułkowska
Software Mentions: 1
Published: almost 9 years ago

10.3390/polym11040707

Statistical Properties of Lasso-Shape Polymers and Their Implications for Complex Lasso Proteins Function
Cited by: 7
Author(s): Paweł Dąbrowski-Tumański, Bartosz Ambroży Greń, Joanna I. Sułkowska
Software Mentions: 1
Published: over 7 years ago

10.3390/polym11050801

A Way to Increase the Bioaccesibility and Photostability of Roflumilast, a COPD Treatment, by Cyclodextrin Monomers
Cited by: 15
Author(s): Adrián Matencio, Samanta Hernández-García, Francisco García-Carmona, José Manuel López‐Nicolás
Software Mentions: 1
Published: over 7 years ago

10.3390/polym11122104

Chemically Denatured Structures of Porcine Pepsin using Small-Angle X-ray Scattering
Cited by: 9
Author(s): Yecheol Rho, Jun Ha Kim, Byoungseok Min, Kyeong Sik Jin
Software Mentions: 1
Published: over 6 years ago

10.3390/polym12020499

Bacterial Natural Disaccharide (Trehalose Tetraester): Molecular Modeling and in Vitro Study of Anticancer Activity on Breast Cancer Cells
Cited by: 7
Author(s): Biliana Nikolova, G Antov, Severina Semkova, Iana Tsoneva, Nelly Christova, Lilyana Nacheva, Proletina Kardaleva, Silvia Angelova, Ivanka Stoineva, Juliana Ivanova, Ivanina Vasileva, Lyudmila Kabaivanova
Software Mentions: 1
Published: over 6 years ago

10.3390/polym13071160

Synthesis, Characterization of Chitosan-Aluminum Oxide Nanocomposite for Green Synthesis of Annulated Imidazopyrazol Thione Derivatives
Cited by: 11
Author(s): Abir S. Abdel‐Naby, Sara Nabil, Sarah Aldulaijan, Ibtisam Mohammed Ababutain, Azzah Ibrahim Alghamdi, Somaiah Almubayedh, Khaled D. Khalil
Software Mentions: 1
Published: over 5 years ago

10.3390/polym13142320

In Silico Characterization of the Interaction between the PBP2a “Decoy” Protein of Resistant Staphylococcus aureus and the Monomeric Units of Eudragit E-100 and Poly(Maleic Acid-alt-Octadecene) Polymers
Cited by: 3
Author(s): Yamil Liscano, Ana Amú, Astrid González, José Oñate-Garzón, Constaín H. Salamanca
Software Mentions: 1
Published: about 5 years ago

10.3390/polym13162611

Development, Characterization and Cell Viability Inhibition of PVA Spheres Loaded with Doxorubicin and 4′-Amino-1-Naphthyl-Chalcone (D14) for Osteosarcoma
Cited by: 5
Author(s): Viviane Seba, Gabriel Goetten de Lima, Bruno Leandro Pereira, Gabriel Silva, Luiza Steffens Reinhardt, Pablo Ricardo Arantes, Bor Shin Chee, Mariana Bastos dos Santos, Suzelei C. França, Luís Octávio Regasini, Ana Lúcia Fachin, Zhi Cao, Michael Nugent, Mozart Marins
Software Mentions: 1
Published: about 5 years ago

10.1093/pcmedi/pbab001

Computational molecular docking and virtual screening revealed promising SARS-CoV-2 drugs
Cited by: 56
Author(s): Maryam Sadat Hosseini, Wanqiu Chen, Daliao Xiao, Charles Wang
Software Mentions: 1
Published: over 5 years ago

10.1080/19336896.2020.1858694

Involvement of N- and C-terminal region of recombinant cervid prion protein in its reactivity to CWD and atypical BSE prions in real-time quaking-induced conversion reaction in the presence of high concentrations of tissue homogenates
Cited by: 3
Author(s): Akio Suzuki, Kazuhei Sawada, Takahiro Yamasaki, Nathaniel D. Denkers, Candace K. Mathiason, Edward A. Hoover, Motohiro Horiuchi
Software Mentions: 1
Published: over 6 years ago

10.1073/pnas.1813715116

Structural basis for prodrug recognition by the SLC15 family of proton-coupled peptide transporters
Cited by: 37
Author(s): G.S. Minhas, Simon Newstead
Software Mentions: 1
Published: over 7 years ago

10.1073/pnas.1813988115

Structure-guided development of selective M3 muscarinic acetylcholine receptor antagonists
Cited by: 58
Author(s): Hongtao Liu, Josefa Hofmann, I. Fish, Benjamin Schaake, Katrin Eitel, Amelie L. Bartuschat, Jonas Kaindl, Hannelore Rampp, Ashutosh Banerjee, Harald Hübner, Mary Jo Clark, Sandra G. Vincent, John T. Fisher, Markus R. Heinrich, Kunio Hirata, Xiangyu Liu, Roger K. Sunahara, Brian K. Shoichet, Brian K. Kobilka, Peter Gmeiner
Software Mentions: 1
Published: almost 8 years ago

10.1073/pnas.1816161116

Divergent kinase regulates membrane ultrastructure of the <i>Toxoplasma</i> parasitophorous vacuole
Cited by: 44
Author(s): Tsebaot Beraki, Xiaoyu Hu, Malgorzata Broncel, Joanna C. Young, William O’Shaughnessy, Dominika Borek, Moritz Treeck, Michael L. Reese
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.22829

Role of the N-terminal lid in regulating the interaction of phosphorylated MDMX with p53
Cited by: 8
Author(s): Jane Chan, Dawn Xin Ping Koh, Yun Liu, Thomas L. Joseph, David P. Lane, Chandra Verma, Yaw Sing Tan
Software Mentions: 1
Published: over 8 years ago