10.1371/journal.pone.0067385

MtnBD Is a Multifunctional Fusion Enzyme in the Methionine Salvage Pathway of Tetrahymena thermophila
Cited by: 7
Author(s): Toshihiro Nakano, Izuru Ohki, Akiho Yokota, Hiroshi Ashida
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0012352

Presaging Critical Residues in Protein interfaces-Web Server (PCRPi-W): A Web Server to Chart Hot Spots in Protein Interfaces
Cited by: 22
Author(s): Joan Segura, Salam A. Assi, Narcís Fernández-Fuentes
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0178381

Targeting YAP/TAZ-TEAD protein-protein interactions using fragment-based and computational modeling approaches
Cited by: 26
Author(s): Hung Yi Kristal Kaan, Adelene Y. L. Sim, Siew Kim Joyce Tan, Chandra Verma, Haiwei Song
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0015575

Characterization of a Novel Interaction between Bcl-2 Members Diva and Harakiri
Cited by: 16
Author(s): Lorenzo Sborgi, Susana Barrera-Vilarmau, Patricia Obregón, Eva de Alba
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0025420

Co-Interactive DNA-Binding between a Novel, Immunophilin-Like Shrimp Protein and VP15 Nucleocapsid Protein of White Spot Syndrome Virus
Cited by: 17
Author(s): Pakkakul Sangsuriya, Saengchan Senapin, Wei Pang Huang, Chu Fang Lo, Timothy W. Flegel
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0216132

Identification of a potential allosteric site of Golgi α-mannosidase II using computer-aided drug design
Cited by: 5
Author(s): Lina Irsheid, Thomas Wehler, Christoph Borek, Werner Kiefer, Ruth Brenk, María Elena Ortiz-Soto, Jürgen Seibel
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0152102

Selective Preference of Parallel DNA Triplexes Is Due to the Disruption of Hoogsteen Hydrogen Bonds Caused by the Severe Nonisostericity between the G*GC and T*AT Triplets
Cited by: 9
Author(s): Gunaseelan Goldsmith, Thenmalarchelvi Rathinavelan, N. Yathindra
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0037724

Pan-Pathway Based Interaction Profiling of FDA-Approved Nucleoside and Nucleobase Analogs with Enzymes of the Human Nucleotide Metabolism
Cited by: 17
Author(s): Louise Egeblad, M. Welin, S. Flodin, S. Gräslund, Liya Wang, Jan Balzarini, Staffan Eriksson, P. Nordlund
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0098791

A dnaN Plasmid Shuffle Strain for Rapid In Vivo Analysis of Mutant Escherichia coli β Clamps Provides Insight Into the Role of Clamp in umuDC-Mediated Cold Sensitivity
Cited by: 4
Author(s): Vignesh M. P. Babu, Mark D. Sutton
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0118587

Whole Transcriptome Analysis Using Next-Generation Sequencing of Sterile-Cultured Eisenia andrei for Immune System Research
Cited by: 6
Author(s): Yohei Mikami, Atsushi Fukushima, Takao Kuwada-Kusunose, Tetsuya Sakurai, Taiichi Kitano, Yusuke Komiyama, Takashi Igarashi, Kanki Komiyama
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0035845

Mutational Analysis of the Cyanobacterial Nitrogen Regulator PipX
Cited by: 18
Author(s): Karim Boumediene Laichoubi, José Espinosa, M.A. Castells, Asunción Contreras
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0053339

Structure of the TPR Domain of AIP: Lack of Client Protein Interaction with the C-Terminal α-7 Helix of the TPR Domain of AIP Is Sufficient for Pituitary Adenoma Predisposition
Cited by: 64
Author(s): Rhodri M. L. Morgan, Laura C. Hernández-Ramírez, Giampaolo Trivellin, Lihong Zhou, S. Mark Roe, Márta Korbonits, Chrisostomos Prodromou
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0210548

Design, expression and functional characterization of a thermostable xylanase from Trichoderma reesei
Cited by: 16
Author(s): Jun He, Feng Tang, Shuai Chen, Bing Yu, Yuheng Luo, Ping Zheng, Xiangbing Mao, Jie Yu, Yu Feng
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0031298

New Binding Mode to TNF-Alpha Revealed by Ubiquitin-Based Artificial Binding Protein
Cited by: 21
Author(s): A. Hoffmann, Michael Kovermann, Hauke Lilie, Markus Fiedler, Jochen Balbach, Rainer Rudolph, Sven Pfeifer
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0044642

Co-Crystalization and In Vitro Biological Characterization of 5-Aryl-4-(5-Substituted-2-4-Dihydroxyphenyl)-1,2,3-Thiadiazole Hsp90 Inhibitors
Cited by: 18
Author(s): Swee Y. Sharp, S. Mark Roe, Egidijus Kazlauskas, Inga Čikotienė, Paul Workman, Daumantas Matulis, Chrisostomos Prodromou
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0166935

Multivalent Interactions of Human Primary Amine Oxidase with the V and C22 Domains of Sialic Acid-Binding Immunoglobulin-Like Lectin-9 Regulate Its Binding and Amine Oxidase Activity
Cited by: 9
Author(s): Heli Elovaara, Vimal Parkash, Ruth Fair-Mäkelä, Outi M. H. Salo‐Ahen, Gabriela Guédez, Eva Bligt-Lindén, Janne Grönholm, Sirpa Jalkanen, Tiina A. Salminen
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0158434

It All Starts with a Sandwich: Identification of Sialidases with Trans-Glycosylation Activity
Cited by: 17
Author(s): Rune Thorbjørn Nordvang, Christian Nyffenegger, Jesper Holck, Carsten Jers, Birgitte Zeuner, Ulrik Kræmer Sundekilde, Anne S. Meyer, Jørn Dalgaard Mikkelsen
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0188407

Docking analysis and the possibility of prediction efficacy for an anti-IL-13 biopharmaceutical treatment with tralokinumab and lebrikizumab for bronchial asthma
Cited by: 15
Author(s): Yutaka Nakamura, Aki Sugano, Mika Ohta, Yutaka Takaoka
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0028511

Structural Analysis of the UBA Domain of X-linked Inhibitor of Apoptosis Protein Reveals Different Surfaces for Ubiquitin-Binding and Self-Association
Cited by: 20
Author(s): Man Kit Tse, Sin Kam Hui, Yinhua Yang, Shutao Yin, Hongyu Hu, Bing Zou, Benjamin C.Y. Wong, Kong Hung Sze
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0014217

Molecular Dynamics Simulation Studies of GLUT4: Substrate-Free and Substrate-Induced Dynamics and ATP-Mediated Glucose Transport Inhibition
Cited by: 25
Author(s): Suma Mohan, Aswathy Sheena, Ninu Poulose, Anilkumar Gopalakrishnapillai
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0166167

The Outer Pore and Selectivity Filter of TRPA1
Cited by: 18
Author(s): Adam Christensen, Nurunisa Akyuz, David P. Corey
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0045929

The Fungal Pathogen Moniliophthora perniciosa Has Genes Similar to Plant PR-1 That Are Highly Expressed during Its Interaction with Cacao
Cited by: 33
Author(s): Paulo José Pereira Lima Teixeira, Daniela P. T. Thomazella, Ramón Vidal, Paula Favoretti Vital do Prado, Osvaldo Reis, Renata Moro Baroni, Sulamita F. Franco, Piotr A. Mieczkowski, Gonçalo Amarante Guimarães Pereira, Jorge Maurı́cio Costa Mondego
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0097782

Helicobacter pylori CagL Y58/E59 Mutation Turns-Off Type IV Secretion-Dependent Delivery of CagA into Host Cells
Cited by: 29
Author(s): Nicole Tegtmeyer, Judith Lind, Benedikt Schmid, Steffen Backert
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0016544

Allelic Diversity of the Plasmodium falciparum Erythrocyte Membrane Protein 1 Entails Variant-Specific Red Cell Surface Epitopes
Cited by: 37
Author(s): Inès Vigan-Womas, Micheline Guillotte, Alexandre Juillerat, Cindy Vallières, Anita Lewit-Bentley, Adama Tall, Laurence Baril, G.A. Bentley, Odile Mercereau‐Puijalon
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0079082

The Tumor Targeted Superantigen ABR-217620 Selectively Engages TRBV7-9 and Exploits TCR-pMHC Affinity Mimicry in Mediating T Cell Cytotoxicity
Cited by: 15
Author(s): Gunnar Hedlund, Helena Eriksson, Anette Sundstedt, G. Forsberg, Bent K. Jakobsen, Nicholas J. Pumphrey, K.E.J. Rodstrom, Karin Lindkvist‐Petersson, Per Björk
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0038126

The Epitope and Neutralization Mechanism of AVFluIgG01, a Broad-Reactive Human Monoclonal Antibody against H5N1 Influenza Virus
Cited by: 25
Author(s): Ziping Cao, Jia-Zi Meng, Xingxing Li, Ruiping Wu, Yanxin Huang, Yuxian He
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0125293

Computational Tools for Interpreting Ion Channel pH-Dependence
Cited by: 8
Author(s): Ivan Sazanavets, Jim Warwicker
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0104865

Functional Roles of the Dimer-Interface Residues in Human Ornithine Decarboxylase
Cited by: 8
Author(s): Chien Yun Lee, Yi Liang Liu, Chih Li Lin, Guang Yaw Liu, Hui‐Chih Hung
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0143407

Functional Characterization of Germline Mutations in PDGFB and PDGFRB in Primary Familial Brain Calcification
Cited by: 72
Author(s): Michael Vanlandewijck, Thibaud Lebouvier, Maarja Andaloussi Mäe, Khayrun Nahar, Simone Hornemann, David Kenkel, Sara I. Cunha, Johan Lennartsson, Andreas Boss, Carl‐Henrik Heldin, Annika Keller, Christer Betsholtz
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0199397

In silico and in vitro analysis of boAP3d1 protein interaction with bovine leukaemia virus gp51
Cited by: 13
Author(s): Adriana Corredor, Janneth González, Luís Baquero, Hernando Curtidor, Nury N. Olaya-Galán, Manuel A. Patarroyo, María Lucía Lahoz Gutiérrez
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0104001

Engineering Neprilysin Activity and Specificity to Create a Novel Therapeutic for Alzheimer’s Disease
Cited by: 43
Author(s): Cecelia Webster, Matthew Burrell, Lars‐Inge Olsson, Susan B. Fowler, Sarah Digby, Alan M. Sandercock, Arjan Snijder, Jan Tebbe, Ulrich Haupts, Joanna Grudzinska, Lutz Jermutus, Christin Andersson
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0212299

S100A4 inhibits cell proliferation by interfering with the S100A1-RAGE V domain
Cited by: 4
Author(s): Md. Imran Khan, Tai Yi Yuan, Ruey Hwang Chou, Chin Yu
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0117823

Insights into the Cellular Function of YhdE, a Nucleotide Pyrophosphatase from Escherichia coli
Cited by: 8
Author(s): Jin Jin, Rui-Juan Wu, Jia Zhu, Suwen Yang, Zhen Lei, Nan Wang, Vinay Kumar Singh, Jimin Zheng, Zongchao Jia
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0076128

Identification and Structural-Functional Analysis of Cyclin-Dependent Kinases of the Cattle Tick Rhipicephalus (Boophilus) microplus
Cited by: 5
Author(s): Helga Gomes, Nelilma C. Romeiro, Glória R.C. Braz, Eduardo Alves Gamosa de Oliveira, Camilla Rodrigues, Rodrigo Nunes da Fonseca, Naftaly Githaka, Masayoshi Isezaki, Satoru Konnai, Kazuhiko Ohashi, Itabajara da Silva Vaz, Carlos Logullo, João Antônio de Moraes
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0016244

Identification of Lysine 37 of Histone H2B as a Novel Site of Methylation
Cited by: 32
Author(s): Kathryn E. Gardner, Li Zhou, Michael A. Parra, Xian Chen, Brian D. Strahl
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0008672

Critical Structural and Functional Roles for the N-Terminal Insertion Sequence in Surfactant Protein B Analogs
Cited by: 49
Author(s): Frans J. Walther, Alan J. Waring, José M. Hernández-Juviel, Larry M. Gordon, Zhengdong Wang, Chun‐Ling Jung, Piotr Ruchala, Andrew P. Clark, Wesley M. Smith, Sanjai Sharma, Robert H. Notter
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0151806

Involvement of Endoplasmic Reticulum Stress in TULP1 Induced Retinal Degeneration
Cited by: 23
Author(s): Glenn P. Lobo, Adrian Au, Philip D. Kiser, Stephanie A. Hagstrom
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0010104

Protein Evolution via Amino Acid and Codon Elimination
Cited by: 9
Author(s): Lise Goltermann, Marie Sofie Yoo Larsen, Rajat Banerjee, A.C. Joerger, Michael Ibba, Thomas Bentin
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0021875

Structural and Sequence Analysis of Imelysin-Like Proteins Implicated in Bacterial Iron Uptake
Cited by: 18
Author(s): Qingping Xu, Neil D. Rawlings, Carol L. Farr, Hsiu‐Ju Chiu, Joanna C Grant, Lukasz Jaroszewski, Heath E. Klock, Mark W. Knuth, Mitchell D. Miller, Dana Weekes, Marc‐André Elsliger, Ashley M. Deacon, Adam Godzik, Scott A. Lesley, Ian A. Wilson
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0083958

Functional Consequences of the Macrophage Stimulating Protein 689C Inflammatory Bowel Disease Risk Allele
Cited by: 16
Author(s): Steven E. Kauder, Lydia Santell, Elaine Mai, Lilyan Wright, Elizabeth Luis, Elsa N N'Diaye, Jeff Lutman, Navneet Ratti, M. Susan, Henry R. Maun, Eric Stefanich, Lino C. Gonzalez, Robert Graham, Lauri Diehl, William A. Faubion, Mary E. Keir, Judy Young, Amitabha Chaudhuri, Robert A. Lazarus, Jackson G. Egen
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0173582

Identification of small molecule inhibitors for influenza a virus using in silico and in vitro approaches
Cited by: 24
Author(s): Juliann Nzembi Makau, Ken Watanabe, Takeshi Ishikawa, Satoshi Mizuta, Takashi Hamada, Nobuyuki Kobayashi, Naoshi Nishida
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0124377

Molecular Dynamics Simulation Reveals Insights into the Mechanism of Unfolding by the A130T/V Mutations within the MID1 Zinc-Binding Bbox1 Domain
Cited by: 46
Author(s): Yunjie Zhao, Chen Zeng, Michael A. Massiah
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0049849

A Computational Methodology to Screen Activities of Enzyme Variants
Cited by: 16
Author(s): Martin R. Hediger, Luca De Vico, Allan Svendsen, Werner Besenmatter, Jan H. Jensen
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0044317

Sub-Domains of Ricin’s B Subunit as Targets of Toxin Neutralizing and Non-Neutralizing Monoclonal Antibodies
Cited by: 31
Author(s): Anastasiya Yermakova, David J. Vance, Nicholas J. Mantis
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0027228

Profiling of Substrate Specificities of 3C-Like Proteases from Group 1, 2a, 2b, and 3 Coronaviruses
Cited by: 69
Author(s): Chi-Pang Chuck, Hak‐Fun Chow, David Chi Cheong Wan, Kam‐Bo Wong
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0193667

Crystal structure and insights into the oligomeric state of UDP-glucose pyrophosphorylase from sugarcane
Cited by: 11
Author(s): Camila A. Cotrim, José Sérgio Soares, Boštjan Kobe, Marcelo Menossi
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0053840

Crystallographic Observation of pH-Induced Conformational Changes in the Amyelois transitella Pheromone-Binding Protein AtraPBP1
Cited by: 35
Author(s): Eric di Luccio, Yuko Ishida, Walter S. Leal, D. Keith Wilson
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0028833

Effect of P to A Mutation of the N-Terminal Residue Adjacent to the Rgd Motif on Rhodostomin: Importance of Dynamics in Integrin Recognition
Cited by: 11
Author(s): Jia Hau Shiu, Chiu Yueh Chen, Yi Chun Chen, Yao Chang, Yung Sheng Chang, Chen‐Hung Huang, Woei Jer Chuang
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0134879

Molecular Dynamics Simulation Studies of dTTP Binding and Catalysis Mediated by YhdE Dimerization
Cited by: 7
Author(s): Nan Wang, Jiahong Jiang, Xichen Li, Hongwei Tan, Jimin Zheng, Guangju Chen, Zongchao Jia
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0164662

The Biophysical Characterisation and SAXS Analysis of Human NLRP1 Uncover a New Level of Complexity of NLR Proteins
Cited by: 12
Author(s): Luigi Martino, Louise Holland, Evangelos Christodoulou, Simone Kunzelmann, Diego Esposito, Katrin Rittinger
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0177330

Action of tyrosinase on alpha and beta-arbutin: A kinetic study
Cited by: 46
Author(s): Antonio García‐Jiménez, José A. Teruel, José Berná, José Neptuno Rodríguez-López, José Tudela, Francisco Garcı́a-Cánovas
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0221666

Structural analysis of the recognition of the -35 promoter element by SigW from Bacillus subtilis
Cited by: 5
Author(s): Eunju Kwon, Shankar Raj Devkota, Deepak Pathak, Pawan Dahal, Dong Young Kim
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0026939

Structure Analysis of a New Psychrophilic Marine Protease
Cited by: 16
Author(s): Si-Cai Zhang, Ming Sun, Li Tang, Qihai Wang, Jianhua Hao, Yujie Han, Xiaojian Hu, Ming Zhou, Sheng‐Xiang Lin
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0007179

βα-Hairpin Clamps Brace βαβ Modules and Can Make Substantive Contributions to the Stability of TIM Barrel Proteins
Cited by: 18
Author(s): Xiao-Yan Yang, Sagar V. Kathuria, Ramakrishna Vadrevu, C. Robert Matthews
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0079687

High Resolution Crystal Structure of Human β-Glucuronidase Reveals Structural Basis of Lysosome Targeting
Cited by: 50
Author(s): Md. Imtaiyaz Hassan, Abdül Waheed, Jeffery H. Grubb, Herbert E. Klei, Sergey Korolev, William S. Sly
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0120692

On the Role of Protein Disulfide Isomerase in the Retrograde Cell Transport of Secreted Phospholipases A2
Cited by: 9
Author(s): Jernej Oberčkal, Lidija Kovačič, Jernej Šribar, Adrijana Leonardi, Klemen Dolinar, Anja Pucer Janež, Igor Križaj
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0185060

Identification and molecular characterization of a metagenome-derived L-lysine decarboxylase gene from subtropical soil microorganisms
Cited by: 11
Author(s): Jie Deng, Hua Gao, Zhen Gao, Huaxian Zhao, Ying Yang, Qiaofen Wu, Bo Wu, Chengjian Jiang
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0107457

Small-Angle X-Ray Scattering Reveals Compact Domain-Domain Interactions in the N-Terminal Region of Filamin C
Cited by: 10
Author(s): Ritika Sethi, Jari Ylänne
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0055516

Isolation of a High Affinity Neutralizing Monoclonal Antibody against 2009 Pandemic H1N1 Virus That Binds at the ‘Sa’ Antigenic Site
Cited by: 13
Author(s): Nachiket Shembekar, Vamsee Mallajosyula, Arpita Mishra, Leena Yeolekar, Rajeev M. Dhere, Subhash V. Kapre, Raghavan Varadarajan, Seema Gupta
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0210100

Holistic engineering of Cal-A lipase chain-length selectivity identifies triglyceride binding hot-spot
Cited by: 13
Author(s): Daniela Quaglia, Lorea Alejaldre, Sara Ouadhi, Olivier Rousseau, Joelle N. Pelletier
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0180772

Comparative studies of three cholesteryl ester transfer proteins and their interactions with known inhibitors
Cited by: 3
Author(s): Ziyun Wang, Manabu Niimi, Qiao Ding, Zhenming Liu, Ling Wang, Jifeng Zhang, Jun Xu, Jianglin Fan
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0182382

Crystal structure of mimivirus uracil-DNA glycosylase
Cited by: 5
Author(s): Eunju Kwon, Deepak Pathak, Hyeun Wook Chang, Dong Young Kim
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0029948

Structural and Functional Insights into Endoglin Ligand Recognition and Binding
Cited by: 86
Author(s): Aaron Alt, Laura Miguel-Romero, Jordi Donderis, Mikel Aristorena, Francisco J. Blanco, Adam Round, Vicente Rubio, Carmelo Bernabeu, Alberto Marina
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0087750

CorA Is a Copper Repressible Surface-Associated Copper(I)-Binding Protein Produced in Methylomicrobium album BG8
Cited by: 13
Author(s): Kenneth A. Johnson, Thomas Ve, Øivind Larsen, Rolf B. Pedersen, Johan R. Lillehaug, Harald B. Jensen, Ronny Helland, Odd André Karlsen
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0054899

Potassium and Ionic Strength Effects on the Conformational and Thermal Stability of Two Aldehyde Dehydrogenases Reveal Structural and Functional Roles of K+-Binding Sites
Cited by: 13
Author(s): Georgina Garza‐Ramos, Carlos Mújica-Jiménez, Rosario A. Muñoz‐Clares
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0094978

Identification of a Novel Function of CX-4945 as a Splicing Regulator
Cited by: 70
Author(s): Hyeongki Kim, Kwangman Choi, Hyunju Kang, So-Young Lee, Seung‐Wook Chi, Min‐Sung Lee, Song Jaehyoung, Im Donghwa, Young‐Ho Choi, Sungchan Cho
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0048389

Predicting Turns in Proteins with a Unified Model
Cited by: 6
Author(s): Qi Song, Tonghua Li, Cong Peng, Jiangming Sun, Dapeng Li, Shengnan Tang
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0021327

High-Resolution X-Ray Structure of the Trimeric Scar/WAVE-Complex Precursor Brk1
Cited by: 10
Author(s): Joern Linkner, Gregor Witte, Theresia E. B. Stradal, Ute Curth, Jan Faix
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0149903

Structure of the Response Regulator NsrR from Streptococcus agalactiae, Which Is Involved in Lantibiotic Resistance
Cited by: 12
Author(s): Sakshi Khosa, A. Hoeppner, Holger Gohlke, Lutz Schmitt, Sander H. J. Smits
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0100797

QSAR and Docking Studies on Capsazepine Derivatives for Immunomodulatory and Anti-Inflammatory Activity
Cited by: 30
Author(s): Aparna Shukla, Pooja Sharma, Om Prakash, Mohinder Singh, Komal Kalani, Feroz Khan, Dnyaneshwar Umrao Bawankule, Suaib Luqman, Santosh K. Srivastava
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0223387

Structural mechanism for regulation of DNA binding of BpsR, a Bordetella regulator of biofilm formation, by 6-hydroxynicotinic acid
Cited by: 5
Author(s): William T. Booth, Ryan R. Davis, Rajendar Deora, Thomas Hollis
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0047665

The Metagenome-Derived Enzymes LipS and LipT Increase the Diversity of Known Lipases
Cited by: 73
Author(s): Jennifer Chow, Filip Kovačić, Yuliya Dall Antonia, Ulrich Krauß, Francesco Fersini, Christel Schmeisser, Benjamin Lauinger, Patrick Bongen, Jörg Pietruszka, Marlen Schmidt, Ina Menyes, Uwe T. Bornscheuer, Marrit Eckstein, Oliver Thum, Andreas Liese, Jochen Mueller‐Dieckmann, Karl‐Erich Jaeger, Wolfgang R. Streit
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0080393

Involvement of and Interaction between WNT10A and EDA Mutations in Tooth Agenesis Cases in the Chinese Population
Cited by: 48
Author(s): Huiying He, Dong Han, Hailan Feng, Hong Qu, Seng Song, Baojing Bai, Zhenting Zhang
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0040846

Prediction of Carbohydrate Binding Sites on Protein Surfaces with 3-Dimensional Probability Density Distributions of Interacting Atoms
Cited by: 25
Author(s): Keng‐Chang Tsai, Jhih-Wei Jian, Ei-Wen Yang, Po-Chiang Hsu, Hung-Pin Peng, Ching-Tai Chen, Jun‐Bo Chen, Jeng-Yih Chang, Wen-Lian Hsu, An-Suei Yang
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0033416

Crystal Structure of Diedel, a Marker of the Immune Response of Drosophila melanogaster
Cited by: 17
Author(s): Franck Coste, Cordula Kemp, Vanessa Bobezeau, Charles Hétru, Christine Kellenberger, Jean‐Luc Imler, Alain Roussel
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0055650

Characterization of the N-Terminal Domain of BteA: A Bordetella Type III Secreted Cytotoxic Effector
Cited by: 5
Author(s): Chen Guttman, Geula Davidov, Hadassa Shaked, Sofiya Kolusheva, Ronit Bitton, Atish Ganguly, Jeff F. Miller, Jordan H. Chill, Raz Zarivach
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0022253

Single-Molecule Fluorescence Polarization Study of Conformational Change in Archaeal Group II Chaperonin
Cited by: 7
Author(s): Ryo Iizuka, Taro Ueno, Nobuhiro Morone, Takashi Funatsu
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0000685

Mutations in the UBIAD1 Gene, Encoding a Potential Prenyltransferase, Are Causal for Schnyder Crystalline Corneal Dystrophy
Cited by: 104
Author(s): Andrew Orr, Marie‐Pierre Dubé, Julien L. Marcadier, Haiyan Jiang, Antonio Federico, Stanley George, Christopher Seamone, David Q. Andrews, Paul Dubord, Simon Holland, Sylvie Provost, Vanessa Mongrain, Susan C. Evans, Brent Higgins, Sharen Bowman, Duane L. Guernsey, Mark E. Samuels
Software Mentions: 1
Published: about 19 years ago

10.1371/journal.pone.0037645

Protein Sequence Alignment Analysis by Local Covariation: Coevolution Statistics Detect Benchmark Alignment Errors
Cited by: 19
Author(s): Russell J. Dickson, Gregory B. Gloor
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0180241

Metal ion coordination in the E. coli Nudix hydrolase dihydroneopterin triphosphate pyrophosphatase: New clues into catalytic mechanism
Cited by: 4
Author(s): Shannon E. Hill, Elaine Nguyen, Chiamaka U. Ukachukwu, Dana M. Freeman, Stephen Quirk, Raquel L. Lieberman
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0162273

GNAI3: Another Candidate Gene to Screen in Persons with Ocular Albinism
Cited by: 3
Author(s): Alejandra Young, Uma Dandekar, Calvin Pan, Avery Sader, Jie Zheng, Richard A. Lewis, Débora B. Farber
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0031445

Protein-Protein Interactions in Clathrin Vesicular Assembly: Radial Distribution of Evolutionary Constraints in Interfaces
Cited by: 1
Author(s): Rupali A. Gadkari, Narayanaswamy Srinivasan
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0079544

New Antimalarial Hits from Dacryodes edulis (Burseraceae) - Part I: Isolation, In Vitro Activity, In Silico “drug-likeness” and Pharmacokinetic Profiles
Cited by: 27
Author(s): Denis Zofou, Esther Laure Tematio, Fidele Ntie‐Kang, Mathieu Téné, Moses N. Ngemenya, Pierre Tane, Vincent P. K. Titanji
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0112902

Identification of Functionally Important Residues of the Rat P2X4 Receptor by Alanine Scanning Mutagenesis of the Dorsal Fin and Left Flipper Domains
Cited by: 9
Author(s): Vendula Tvrdoňová, Milos B. Rokic, Stanko S. Stojilković, Hana Zemková
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0240920

A highly active heparinase I from Bacteroides cellulosilyticus: Cloning, high level expression, and molecular characterization
Cited by: 4
Author(s): Liwei Gao, Hongtao Zhu, Caiyun Liu, Zhixiang Lv, Xue‐Gong Fan, Ye-Wang Zhang
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0074636

Frequency and Pattern of Heteroplasmy in the Complete Human Mitochondrial Genome
Cited by: 71
Author(s): Ariel Delgado Ramos, Cristina Santos, Ligia Mateiu, María del Mar González, Luis Álvarez, Luı́sa Azevedo, António Amorim, María Pilar Aluja
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0072718

NMR Structure of Temporin-1 Ta in Lipopolysaccharide Micelles: Mechanistic Insight into Inactivation by Outer Membrane
Cited by: 30
Author(s): Rathi Saravanan, M. S. Joshi, Harini Mohanram, Anirban Bhunia, Maria Luisa Mangoni, Surajit Bhattacharjya
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0229077

Novel EGFR ectodomain mutations associated with ligand-independent activation and cetuximab resistance in head and neck cancer
Cited by: 12
Author(s): Sindhu Nair, Hoa Q. Trummell, Rajani Rajbhandari, Nanda K. Thudi, Susan E. Nozell, Jason M. Warram, Christopher D. Willey, Eddy S. Yang, William J. Placzek, James A. Bonner, Markus Bredel
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0087963

Structural Basis for Disparate Sugar-Binding Specificities in the Homologous Cargo Receptors ERGIC-53 and VIP36
Cited by: 30
Author(s): Tadashi Satoh, K. Suzuki, Takumi Yamaguchi, Koichi Kato
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0195558

Membrane permeabilizing amphiphilic peptide delivers recombinant transcription factor and CRISPR-Cas9/Cpf1 ribonucleoproteins in hard-to-modify cells
Cited by: 51
Author(s): Thomas Del’Guidice, Jean-Pascal Lepetit-Stoffaes, Louis-Jean Bordeleau, Jean Roberge, Vanessa Théberge, Coraline Lauvaux, Xavier Barbeau, Jessica Trottier, Vibhuti P. Davé, Denis‐Claude Roy, Bruno Gaillet, Alain Garnier, David R.P. Guay
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0123379

Structural Effects of Protein Aging: Terminal Marking by Deamidation in Human Triosephosphate Isomerase
Cited by: 18
Author(s): Ignacio De la Mora-De la Mora, Alfredo Torres‐Larios, Sergio Enríquez-Flores, Sara T. Méndez, Adriana Castillo-Villanueva, Saúl Gómez-Manzo, Gabriel López-Velázquez, Jaime Marcial-Quino, Angélica Torres-Arroyo, Itzhel García-Torres, Horacio Reyes‐Vivas, Jesús Oria-Hernández
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0066542

Functional Characterization of the Cardiac Ryanodine Receptor Pore-Forming Region
Cited by: 7
Author(s): Joanne Euden, Sammy A. Mason, Alan J. Williams
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0023245

Structural Analysis of the Essential Resuscitation Promoting Factor YeaZ Suggests a Mechanism of Nucleotide Regulation through Dimer Reorganization
Cited by: 22
Author(s): Inci Aydin, Yumiko Saijo-Hamano, Keiichi Namba, Connor Thomas, Anna Roujeinikova
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0069228

Disruption of Hydrogen Bonds between Major Histocompatibility Complex Class II and the Peptide N-Terminus Is Not Sufficient to Form a Human Leukocyte Antigen-DM Receptive State of Major Histocompatibility Complex Class II
Cited by: 12
Author(s): Monika-Sarah E. D. Schulze, Anne-Kathrin Anders, Dhruv Sethi, Melissa Call
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0038709

Mycobacterium tuberculosis DosR Regulon Gene Rv0079 Encodes a Putative, ‘Dormancy Associated Translation Inhibitor (DATIN)’
Cited by: 28
Author(s): Ashutosh Kumar, Mohammad Majid, Ralph Kunisch, Pittu Sandhya Rani, Insaf Ahmed Qureshi, Astrid Lewin, Seyed E. Hasnain, Niyaz Ahmed
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0007295

Non-Hemagglutinating Flaviviruses: Molecular Mechanisms for the Emergence of New Strains via Adaptation to European Ticks
Cited by: 45
Author(s): М. А. Хаснатинов, Katarína Ustaníková, Т. В. Фролова, В В Погодина, Н. Г. Бочкова, Л С Левина, Mirko Slovák, Mária Kazimírová, М Лабуда, Boris Klempa, E Elecková, Ernest A. Gould, Т.С. Грицун
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0256572

Human norovirus GII.4 Hong Kong variant shares common ancestry with GII.4 Osaka and emerged in Thailand in 2016
Cited by: 1
Author(s): Watchaporn Chuchaona, Jira Chansaenroj, Jiratchaya Puenpa, Sarawut Khongwichit, Sumeth Korkong, Sompong Vongpunsawad, Yong Poovorawan
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0073782

Insights into the Cross-Immunity Mechanism within Effector Families of Bacteria Type VI Secretion System from the Structure of StTae4-EcTai4 Complex
Cited by: 11
Author(s): H. Zhang, Zengqiang Gao, Yong Wei, Jianhua Xu, Yuhui Dong
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0028778

In silico Analysis of Conformational Changes Induced by Mutation of Aromatic Binding Residues: Consequences for Drug Binding in the hERG K+ Channel
Cited by: 24
Author(s): Kirsten Knape, Tobias Linder, Peter Wolschann, Anton Beyer, Anna Stary-Weinzinger
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0048595

Functional and Structural Divergence of an Unusual LTR Retrotransposon Family in Plants
Cited by: 12
Author(s): Dongying Gao, José Carlos Jiménez-López, Akihisa Iwata, Navdeep Gill, Scott A. Jackson
Software Mentions: 1
Published: almost 14 years ago