pypi: PyMOL | Projects | Ecosyste.ms: Papers

10.6026/97320630017011

Molecular docking analysis of azithromycin and hydroxychloroquine with spike surface glycoprotein of SARS-CoV-2
Cited by: 4
Author(s): Jitender Singh
Software Mentions: 1
Published: over 5 years ago

10.6026/97320630013054

Annotation of gene sequence and protein structure of brinjal EDS1
Cited by: 2
Author(s): Soumya Sharma, Sarika Jaiswal, Sunil Archak
Software Mentions: 1
Published: over 9 years ago

Structure to function analysis with antigenic characterization of a hypothetical protein, HPAG1_0576 from Helicobacter pylori HPAG1
Cited by: 6
Author(s): Hanan Ashrafi, Muntequa Ishtiaq Siraji, Nazmir Nur Showva, Mohammad Uzzal Hossain, Tareq Hossan, Ashraful Hasan, Abdullah Mohammad Shohael, Mohammad Mahfuz Ali Khan Shawan
Software Mentions: 1
Published: about 7 years ago

10.6026/97320630016301

Repurposing of known anti-virals as potential inhibitors for SARS-CoV-2 main protease using molecular docking analysis
Cited by: 33
Author(s): Hakmi
Software Mentions: 1
Published: over 6 years ago

10.1155/2018/9782419

β-Carboline Silver Compound Binding Studies with Human Serum Albumin: A Comprehensive Multispectroscopic Analysis and Molecular Modeling Study
Cited by: 9
Author(s): Ali Alsalme, Rais Ahmad Khan, Arwa M. Alkathiri, Mushir Ali, Sartaj Tabassum, Mohammed H. Jaafar, Hamad A. Al‐Lohedan
Software Mentions: 1
Published: over 8 years ago

10.1186/s13062-015-0091-4

Eukaryotic G protein-coupled receptors as descendants of prokaryotic sodium-translocating rhodopsins
Cited by: 33
Author(s): Daria N. Shalaeva, Michael Y. Galperin, Armen Y. Mulkidjanian
Software Mentions: 1
Published: almost 11 years ago

10.1186/s13062-015-0059-4

Modeling of interaction between cytochrome c and the WD domains of Apaf-1: bifurcated salt bridges underlying apoptosome assembly
Cited by: 14
Author(s): Daria N. Shalaeva, Daria V. Dibrova, Michael Y. Galperin, Armen Y. Mulkidjanian
Software Mentions: 1
Published: about 11 years ago

10.1186/s13062-015-0099-9

A novel RING finger in the C-terminal domain of the coatomer protein α-COP
Cited by: 6
Author(s): Gurmeet Kaur, S. Subramanian
Software Mentions: 1
Published: over 10 years ago

10.1186/s13062-014-0031-8

A new ensemble coevolution system for detecting HIV-1 protein coevolution
Cited by: 31
Author(s): Guangdi Li, Kristof Theys, Jens Verheyen, Andrea-Clemencia Pineda-Peña, Ricardo Khouri, Supinya Piampongsant, Mónica Eusébio, Jan Ramon, Anne‐Mieke Vandamme
Software Mentions: 1
Published: over 11 years ago

10.1186/s13062-015-0066-5

The UBR-box and its relationship to binuclear RING-like treble clef zinc fingers
Cited by: 6
Author(s): Gurmeet Kaur, S. Subramanian
Software Mentions: 1
Published: about 11 years ago

10.1186/s13062-016-0130-9

Computational recognition and analysis of hitherto uncharacterized nucleotide cyclase-like proteins in bacteria
Cited by: 3
Author(s): Gayatri Ramakrishnan, A. C. Jain, Nagasuma Chandra, Narayanaswamy Srinivasan
Software Mentions: 1
Published: about 10 years ago

10.1186/s13062-015-0044-y

Synthetic lethals in HIV: ways to avoid drug resistance
Cited by: 3
Author(s): Michel Petitjean, Anne Badel, Reiner A. Veitia, Anne Vanet
Software Mentions: 1
Published: over 11 years ago

10.1186/s13062-017-0179-0

Integrative modelling of TIR domain-containing adaptor molecule inducing interferon-β (TRIF) provides insights into its autoinhibited state
Cited by: 10
Author(s): Jarjapu Mahita, Ramanathan Sowdhamini
Software Mentions: 1
Published: over 9 years ago

10.1186/1745-6150-1-15

Cited by: 13
Author(s): Adam Pavlı́ček, Jerzy Jurka
Software Mentions: 1
Published: over 20 years ago

10.1242/bio.047233

Visualisation of ribosomes in Drosophila axons using Ribo-BiFC
Cited by: 3
Author(s): Anand Kumar Singh, Akilu Abdullahi, Matthias Soller, Alexandre David, Saverio Brogna
Software Mentions: 1
Published: over 7 years ago

10.3390/biology9050108

Clinical Genetics of Prolidase Deficiency: An Updated Review
Cited by: 18
Author(s): Marta Spodenkiewicz, Michel Spodenkiewicz, Maureen Cleary, Marie Massier, Giorgos Fitsialos, Vincent Cottin, Guillaume Jouret, Céline Poirsier, Martine Doco‐Fenzy, Anne-Sophie Lèbre
Software Mentions: 1
Published: about 6 years ago

10.3390/biology10090936

Identification and Characterization of a Rhodopsin Kinase Gene in the Suckers of Octopus vulgaris: Looking around Using Arms?
Cited by: 4
Author(s): Al-Sayed Al-Soudy, Valeria Maselli, Stefania Galdiero, Michael J. Kuba, Gianluca Polese, Anna Di Cosmo
Software Mentions: 1
Published: almost 5 years ago

10.3390/biology9100323

Characterisation and Mutagenesis Study of An Alternative Sigma Factor Gene (hrpL) from Erwinia mallotivora Reveal Its Central Role in Papaya Dieback Disease
Cited by: 1
Author(s): Amin Asyraf Tamizi, Norliza Abu Bakar, Aimera-Farhana Samsuddin, Lina Rozano, Rohaiza Ahmad-Redzuan, Abdul-Munir Abdul-Murad
Software Mentions: 1
Published: almost 6 years ago

10.3390/biology10040319

Effects on Steroid 5-Alpha Reductase Gene Expression of Thai Rice Bran Extracts and Molecular Dynamics Study on SRD5A2
Cited by: 16
Author(s): Chiranan Khantham, Wipawadee Yooin, Korawan Sringarm, Sarana Rose Sommano, Supat Jiranusornkul, F. David Carmona, Wutigri Nimlamool, Pensak Jantrawut, Pornchai Rachtanapun, Warintorn Ruksiriwanich
Software Mentions: 1
Published: over 5 years ago

10.3390/biology10020091

One Year of SARS-CoV-2: How Much Has the Virus Changed?
Cited by: 81
Author(s): Santiago Vilar, Daniel G. Isom
Software Mentions: 1
Published: over 5 years ago

10.3390/biology10040330

Identification and Functional Analysis of a Lysozyme Gene from Coridius chinensis (Hemiptera: Dinidoridae)
Cited by: 2
Author(s): Hai Huang, Juan Du, Shangwei Li, Tao Gong
Software Mentions: 1
Published: over 5 years ago

10.3390/biology10030199

Diaportheone A Analogues Instigate a Neuroprotective Effect by Protecting Neuroblastoma SH-SY5Y Cells from Oxidative Stress
Cited by: 7
Author(s): Mario A. Tan, Е. И. Захарова, Seong Soo A. An
Software Mentions: 1
Published: over 5 years ago

10.1186/s40364-021-00286-9

Pathophysiological roles of myristoylated alanine-rich C-kinase substrate (MARCKS) in hematological malignancies
Cited by: 7
Author(s): Deepak Narayanan Iyer, Omar Faruq, Lun Zhang, Nasrin Rastgoo, Aijun Liu, Hong Chang
Software Mentions: 1
Published: over 5 years ago

10.1186/1475-925X-8-14

Book review of Structural Bioinformatics: An Algorithmic Approach by Forbes J. Burkowski
Cited by: 0
Author(s): Ilza Pajeva
Software Mentions: 1
Published: over 17 years ago

10.1155/2013/851428

Extremophilic SHMTs: From Structure to Biotechnology
Cited by: 19
Author(s): Sebastiana Angelaccio
Software Mentions: 1
Published: over 13 years ago

10.1155/2014/291214

Dual Binding Site and Selective Acetylcholinesterase Inhibitors Derived from Integrated Pharmacophore Models and Sequential Virtual Screening
Cited by: 31
Author(s): Shikhar Gupta, C. Gopi Mohan
Software Mentions: 1
Published: over 12 years ago

10.1155/2018/9538193

Biochemical and Biophysical Characterization of the Enolase fromHelicobacter pylori
Cited by: 8
Author(s): María de Jesús López-López, Isabel Cristina Rodríguez-Luna, Edgar E. Lara-Ramírez, Marisol López-Hidalgo, Claudia G. Benítez‐Cardoza, Xianwu Guo
Software Mentions: 1
Published: over 7 years ago

10.1155/2014/342725

Crystal Structure ofDeinococcus radioduransRecQ Helicase Catalytic Core Domain: The Interdomain Flexibility
Cited by: 5
Author(s): Sheng-Chia Chen, Chi‐Hung Huang, Changju Yang, Tzong‐Der Way, Mau Song Chang, Yeh Chen
Software Mentions: 1
Published: over 12 years ago

10.1155/2014/389869

Carborane-Based Carbonic Anhydrase Inhibitors: Insight into CAII/CAIX Specificity from a High-Resolution Crystal Structure, Modeling, and Quantum Chemical Calculations
Cited by: 17
Author(s): P. Mäder, Adam Pecina, Petr Cígler, Martin Lepšı́k, Václav Šícha, Pavel Hobza, Bohumı́r Grüner, Jindřich Fanfrlík, J. Brynda, P. Řezáčová
Software Mentions: 1
Published: over 12 years ago

10.1155/2015/402536

Predicting Flavin and Nicotinamide Adenine Dinucleotide-Binding Sites in Proteins Using the Fragment Transformation Method
Cited by: 3
Author(s): Chih-Hao Lu, Chao Yu, Yu‐Feng Lin, Jinyi Chen
Software Mentions: 1
Published: over 11 years ago

10.1155/2014/971345

Novel Bifunctional Single-Chain Variable Antibody Fragments to Enhance Virolysis by Complement: Generation and Proof-of-Concept
Cited by: 2
Author(s): G. Carl Huber, Zoltán Bánki, Renate Kunert, Heribert Stoiber
Software Mentions: 1
Published: over 12 years ago

10.1155/2021/6471400

Molecular Mechanism of Jinchan Oral Liquid in the Treatment of Children with Respiratory Syncytial Virus Pneumonia Based on Network Pharmacology and Molecular Docking Technology
Cited by: 3
Author(s): Li Shen, Yiguo Jiang, Jin Lu, Guangfei Wang, Xiaolan Zhang, Shiwen He, Cheng Wang, Zhiping Li
Software Mentions: 1
Published: almost 5 years ago

10.1093/bib/bbt043

Best practices in bioinformatics training for life scientists
Cited by: 50
Author(s): Allegra Via, Thomas Blicher, Erik Bongcam‐Rudloff, Michelle D. Brazas, Catherine Brooksbank, Aidan Budd, Javier De Las Rivas, Jacqueline Dreyer, Pedro Fernandes, Celia van Gelder, Joachim Jacob, Rafael C. Jiménez, Jane Loveland, Federico Morán, Nicola Mulder, Tommi Nyrönen, Kristian Rother, Maria Victoria Schneider, Teresa K. Attwood
Software Mentions: 1
Published: about 13 years ago

10.1093/bib/bbab056

A model for pH coupling of the SARS-CoV-2 spike protein open/closed equilibrium
Cited by: 15
Author(s): Jim Warwicker
Software Mentions: 1
Published: over 5 years ago

10.1186/s42269-020-00479-6

Luteolin and abyssinone II as potential inhibitors of SARS-CoV-2: an in silico molecular modeling approach in battling the COVID-19 outbreak
Cited by: 49
Author(s): Mohammad Mahfuz Ali Khan Shawan, Sajal Kumar Halder, Md. Ashraful Hasan
Software Mentions: 1
Published: over 5 years ago

10.1111/cns.13627

High‐sensitive clinical diagnostic method for PTPRZ1‐MET and the characteristic protein structure contributing to ligand‐independent MET activation
Cited by: 5
Author(s): Ruoyu Huang, Yanwei Liu, Kuanyu Wang, Zheng Wang, Chuanbao Zhang, Wei Zhang, Zheng Zhao, Guanzhang Li, Lijie Huang, Yuanhao Chang, Fan Zeng, Tao Jiang, Huimin Hu
Software Mentions: 1
Published: over 5 years ago

10.1111/cns.13692

CHD4 variants are associated with childhood idiopathic epilepsy with sinus arrhythmia
Cited by: 12
Author(s): Xiaorong Liu, Ting‐Ting Ye, Wenjun Zhang, Xuan Guo, Jie Wang, Shaoping Huang, Longshan Xie, Xiaohang Song, Wei‐Wen Deng, Bing‐Mei Li, Na He, Qianyi Wu, Min‐Zhi Zhuang, Meng Xu, Yi‐Wu Shi, Tao Su, Yong‐Hong Yi, Wei‐Ping Liao
Software Mentions: 1
Published: about 5 years ago

10.20892/j.issn.2095-3941.2020.0568

VHH212 nanobody targeting the hypoxia-inducible factor 1α suppresses angiogenesis and potentiates gemcitabine therapy in pancreatic cancer in vivo
Cited by: 13
Author(s): Guangbo Kang, Min Hu, He Ren, Jiewen Wang, Xin Cheng, Ruowei Li, Bo Yuan, Yasmine Balan, Zixuan Bai, He Huang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12935-020-01198-8

Novel monoclonal antibodies against thymidine kinase 1 and their potential use for the immunotargeting of lung, breast and colon cancer cells
Cited by: 9
Author(s): Edwin J. Velazquez, Taylor D. Brindley, Gajendra Shrestha, Eliza E. Bitter, Jordan D. Cress, Michelle H. Townsend, Bradford K. Berges, Richard A. Robison, K. Scott Weber, Kim L. O’Neill
Software Mentions: 1
Published: over 6 years ago

10.1186/s12935-021-02137-x

Bufalin induces mitochondrial dysfunction and promotes apoptosis of glioma cells by regulating Annexin A2 and DRP1 protein expression
Cited by: 10
Author(s): Li Yao, Yan Zhang, Xufang Wang, Qian Yang, Xiuping Zhou, Junsheng Wu, Yang Xu, Yani Zhao, Rui Lin, Yanhua Xie, Jiani Yuan, Xiaohui Zheng, Siwang Wang
Software Mentions: 1
Published: about 5 years ago

10.1186/s12935-021-02144-y

Noncoding RNAs involved in the STAT3 pathway in glioma
Cited by: 12
Author(s): Bin Zheng, Wei Ji, Bin Xu, Zhengyuan Huo, Hui Huang, Jin Huang, Jiantong Jiao, Jianghua Shao, Xiaolu Zhang
Software Mentions: 1
Published: almost 5 years ago

10.2174/15701808113106660078

Design and Synthesis of New Dual Binding Site Cholinesterase Inhibitors: in vitro Inhibition Studies with in silico Docking
Cited by: 22
Author(s): Muhammad Yar, Marek Bajda, Rana Atif Mehmood, Lala Rukh Sidra, Nisar Ullah, Lubna Shahzadi, Muhammad Ashraf, Tayaba Ismail, Sohail Anjum Shahzad, Zulfiqar Ali Khan, Syed Ali Raza Naqvi, Nasir Mahmood
Software Mentions: 1
Published: over 12 years ago

10.3390/life11060526

A Structural Approach into Drug Discovery Based on Autophagy
Cited by: 0
Author(s): Sung-Min Kang, Do-Hee Kim
Software Mentions: 1
Published: about 5 years ago

10.3390/life11050407

Toward an Understanding of the Structural and Mechanistic Aspects of Protein-Protein Interactions in 2-Oxoacid Dehydrogenase Complexes
Cited by: 10
Author(s): Natalia S. Nemeria, Xu Zhang, João Leandro, Jieyu Zhou, Colin D. Bain, Sander M. Houten, Frank Jordan
Software Mentions: 1
Published: over 5 years ago

10.3390/life11020077

Identification of Lead Compounds against Scm (fms10) in Enterococcus faecium Using Computer Aided Drug Designing
Cited by: 40
Author(s): Muhammad Rasheed, Muhammad Nasir Iqbal, Salina Saddick, Iqra Ali, F.A. Khan, Sumaira Kanwal, Dawood Ahmed, Muhammad Ibrahim, Umara Afzal, Muhammad Awais
Software Mentions: 1
Published: over 5 years ago

10.3390/life11090993

Computational Insights into the Interaction between Cytoadherence Receptor gC1qR and the DBLβ12 Domain of a Plasmodium falciparum PfEMP1 Ligand
Cited by: 1
Author(s): Rowaida Bakri, Mohd Rehan, Hina Shamshad, Abdul Hafiz
Software Mentions: 1
Published: almost 5 years ago

10.3390/life6010002

Perspectives and Insights into the Competition for Aminoacyl-tRNAs between the Translational Machinery and for tRNA Dependent Non-Ribosomal Peptide Bond Formation
Cited by: 5
Author(s): Angela W.S. Fung, Roshani Payoe, Richard P. Fahlman
Software Mentions: 1
Published: over 10 years ago

10.3390/life11090957

Structural Insights into Protein Regulation by Phosphorylation and Substrate Recognition of Protein Kinases/Phosphatases
Cited by: 16
Author(s): Seung-Hyeon Seok
Software Mentions: 1
Published: almost 5 years ago

10.3390/life10090201

Further Characterization of the Pseudo-Symmetrical Ribosomal Region
Cited by: 8
Author(s): Mario Iván Domínguez Rivas, George E. Fox
Software Mentions: 1
Published: almost 6 years ago

10.3390/life10090215

Case Report: Identification of a Novel Variant (m.8909T>C) of Human Mitochondrial ATP6 Gene and Its Functional Consequences on Yeast ATP Synthase
Cited by: 5
Author(s): Qiuju Ding, Róża Kucharczyk, Weiwei Zhao, Alain Dautant, Shutian Xu, Katarzyna Niedźwiecka, Su X, Marie‐France Giraud, Kewin Gombeau, Mingchao Zhang, Honglang Xie, Caihong Zeng, Marine Bouhier, Jean‐Paul di Rago, Zhihong Liu, Déborah Tribouillard-Tanvier, Huimei Chen
Software Mentions: 1
Published: almost 6 years ago

10.26508/lsa.202000858

Structural comparison of GLUT1 to GLUT3 reveal transport regulation mechanism in sugar porter family
Cited by: 32
Author(s): Tânia F. Custódio, Peter Aasted Paulsen, Kelly M. Frain, Bjørn Panyella Pedersen
Software Mentions: 1
Published: over 5 years ago

10.26508/lsa.201900295

Characterisation of class VI TRIM RING domains: linking RING activity to C-terminal domain identity
Cited by: 22
Author(s): Rebecca V. Stevens, Diego Esposito, Katrin Rittinger
Software Mentions: 1
Published: over 7 years ago

10.26508/lsa.201900478

Enhanced carbonyl stress induces irreversible multimerization of CRMP2 in schizophrenia pathogenesis
Cited by: 21
Author(s): Manabu Toyoshima, Xuping Jiang, Tetsuji Ogawa, Tetsuo Ohnishi, Shogo Yoshihara, Shabeesh Balan, Takeo Yoshikawa, Nobutaka Hirokawa
Software Mentions: 1
Published: almost 7 years ago

10.26508/lsa.202101057

Biallelic ADPRHL2 mutations in complex neuropathy affect ADP ribosylation and DNA damage response
Cited by: 9
Author(s): Danique Beijer, Thomas Agnew, J.G.M. Rack, Evgeniia Prokhorova, Tine Deconinck, Berten Ceulemans, Stojan Perić, V. Milić Rašić, Peter De Jonghe, Ivan Ahel, Jonathan Baets
Software Mentions: 1
Published: almost 5 years ago

10.26508/lsa.202000683

Snail augments fatty acid oxidation by suppression of mitochondrial ACC2 during cancer progression
Cited by: 20
Author(s): Ji Hye Yang, Nam Hee Kim, Jung Won Yun, Eunae Sandra Cho, Yong Hoon, Sue Bean Cho, Seon-Hyeong Lee, So Young, Soo-Youl Kim, Jiwon Choi, Tin Tin Manh Nguyen, Sunghyouk Park, Hyun Sil Kim, Jong In Yook
Software Mentions: 1
Published: about 6 years ago

10.26508/lsa.201900349

KAP1 is an antiparallel dimer with a functional asymmetry
Cited by: 15
Author(s): Giulia Fonti, M.J. Marcaida, Louise Bryan, Sylvain Träger, Alexandra Styliani Kalantzi, Pierre-Yves Jl Helleboid, Davide Demurtas, Mark D. Tully, Sergei Grudinin, Didier Trono, Beat Fierz, Matteo Dal Peraro
Software Mentions: 1
Published: about 7 years ago

10.26508/lsa.202000724

Structure of avian influenza hemagglutinin in complex with a small molecule entry inhibitor
Cited by: 8
Author(s): Aleksandar Antanasijevic, Matthew A. Durst, Han Cheng, Irina N. Gaisina, Jasmine T. Perez, Balaji Manicassamy, Lijun Rong, A. Lavie, Michael Caffrey
Software Mentions: 1
Published: about 6 years ago

10.26508/lsa.202000849

Crystal structure of inhibitor-bound human MSPL that can activate high pathogenic avian influenza
Cited by: 5
Author(s): Ayako Ohno, N. Maita, Takanori Tabata, Hikaru Nagano, Kyohei Arita, Mariko Ariyoshi, Takayuki Uchida, Reiko Nakao, Anayt Ulla, Kosuke Sugiura, Kenji Kishimoto, Shigetada Teshima-Kondo, Yuushi Okumura, Takeshi Nikawa
Software Mentions: 1
Published: over 5 years ago

10.26508/lsa.201900491

Plasticity in salt bridge allows fusion-competent ubiquitylation of mitofusins and Cdc48 recognition
Cited by: 10
Author(s): Vincent Anton, Ira Buntenbroich, Ramona Schuster, Felix Babatz, Tânia Simões, Selver Altin, Gaetano Calabrese, Jan Riemer, Astrid Schauß, Mafalda Escobar-Henriques
Software Mentions: 1
Published: over 6 years ago

10.26508/lsa.202000665

A double role of the Gal80 N terminus in activation of transcription by Gal4p
Cited by: 0
Author(s): Annekathrin Reinhardt-Tews, Rościsław Krutyhołowa, Christian Günzel, Constance Roehl, Sebastian Glatt, Karin D. Breunig
Software Mentions: 1
Published: almost 6 years ago

10.26508/lsa.201900366

Systematic identification of recognition motifs for the hub protein LC8
Cited by: 28
Author(s): Nathan Jespersen, Aidan Estelle, Nathan Waugh, Norman E. Davey, Cecilia Blikstad, York Christoph Ammon, Anna Akhmanova, Ylva Ivarsson, David A. Hendrix, Elisar Barbar
Software Mentions: 1
Published: about 7 years ago

10.1186/1476-511X-11-109

Agonistic effect of polyunsaturated fatty acids (PUFAs) and its metabolites on brain-derived neurotrophic factor (BDNF) through molecular docking simulation
Cited by: 25
Author(s): Umashankar Vetrivel, Sathyabaarathi Ravichandran, Kaviarasan Kuppan, Jithu Mohanlal, Undurti N. Das, Narayanasamy Angayarkanni
Software Mentions: 1
Published: almost 14 years ago

10.4161/mabs.28612

Discovery and characterization of olokizumab
Cited by: 64
Author(s): Stevan Shaw, Tom Bourne, Chris Meier, Bruce Carrington, Rich Gelinas, Alistair J. Henry, Andrew G. Popplewell, Ralph Adams, Terry Baker, Steve Rapecki, Diane Marshall, A. R. Moore, Helen Neale, Alastair D. G. Lawson
Software Mentions: 1
Published: over 12 years ago

10.1080/19420862.2016.1193661

Advanced assessment of the physicochemical characteristics of Remicade® and Inflectra® by sensitive LC/MS techniques
Cited by: 36
Author(s): Jing Fang, Catalin E. Doneanu, William R. Alley, Ying Yu, Alain Beck, Weibin Chen
Software Mentions: 1
Published: about 10 years ago

10.1080/19420862.2016.1158370

Length-independent structural similarities enrich the antibody CDR canonical class model
Cited by: 43
Author(s): Jarosław Nowak, Terry Baker, Guy Georges, Sebastian Kelm, Stefan Klostermann, Jiye Shi, Sridha Sridharan, Charlotte M. Deane
Software Mentions: 1
Published: over 10 years ago

10.1186/1475-2875-13-434

Characterization of the Anopheles gambiae octopamine receptor and discovery of potential agonists and antagonists using a combined computational-experimental approach
Cited by: 33
Author(s): Kevin Kastner, Douglas A. Shoue, Guillermina Estiú, Julia Wolford, Megan Fuerst, Lowell D. Markley, Jesús A. Izaguirre, Mary Ann McDowell
Software Mentions: 1
Published: over 11 years ago

10.1186/s12936-020-03317-2

Polymorphism analysis of propeller domain of k13 gene in Plasmodium ovale curtisi and Plasmodium ovale wallikeri isolates original infection from Myanmar and Africa in Yunnan Province, China
Cited by: 5
Author(s): Mengni Chen, Ying Duan, Yan Deng, Yanchun Xu, Yan Liu, Canglin Zhang, Herong Huang
Software Mentions: 1
Published: about 6 years ago

10.1186/s12936-019-2790-2

Comparing sequence and structure of falcipains and human homologs at prodomain and catalytic active site for malarial peptide based inhibitor design
Cited by: 14
Author(s): Thommas M. Musyoka, Joyce Njuguna, Özlem Tastan Bishop
Software Mentions: 1
Published: over 7 years ago

10.1186/1475-2875-9-94

Epitope mapping of PfCP-2.9, an asexual blood-stage vaccine candidate of Plasmodium falciparum
Cited by: 6
Author(s): Changling Li, Rui Wang, Yuan Wu, Dongmei Zhang, Zhicheng He, Weiqing Pan
Software Mentions: 1
Published: over 16 years ago

10.1186/s12936-017-2032-4

Selective inhibition of PfA-M1, over PfA-M17, by an amino-benzosuberone derivative blocks malaria parasites development in vitro and in vivo
Cited by: 22
Author(s): Lotfi Bounaadja, Marjorie Schmitt, Sébastien Albrecht, Elisabeth Mouray, Céline Tarnus, Isabelle Florent
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12936-021-03827-7

Characterization of the substrate binding site of an iron detoxifying membrane transporter from Plasmodium falciparum
Cited by: 4
Author(s): Pragya Sharma, Veronika Tóth, Edel M. Hyland, Christopher J. Law
Software Mentions: 1
Published: about 5 years ago

10.1186/s12936-016-1097-9

Comparative genome-wide analysis and evolutionary history of haemoglobin-processing and haem detoxification enzymes in malarial parasites
Cited by: 11
Author(s): Patrath Ponsuwanna, Theerarat Kochakarn, Duangkamon Bunditvorapoom, Krittikorn Kümpornsin, Thomas D. Otto, Chase Ridenour, Kesinee Chotivanich, Prapon Wilairat, Nicholas J. White, Olivo Miotto, Thanat Chookajorn
Software Mentions: 1
Published: over 10 years ago

10.1186/1475-2875-13-118

Identification of heat shock factor binding protein in Plasmodium falciparum
Cited by: 7
Author(s): Syed K Sayeed, Varun Shah, Shweta Chaubey, Meetali Singh, Shuba Varshini Alampalli, Utpal Tatu
Software Mentions: 1
Published: over 12 years ago

10.1186/s12936-020-3134-y

Genetic diversity of Plasmodium vivax and Plasmodium falciparum lactate dehydrogenases in Myanmar isolates
Cited by: 4
Author(s): Jin Young Lee, Tae Im Kim, Hương Giang Lê, Won Gi Yoo, Jung‐Mi Kang, Seongkyu Ahn, Moe Kyaw Myint, Khin Lin, Tong‐Soo Kim, Byoung-Kuk Na
Software Mentions: 1
Published: over 6 years ago

10.1186/s12936-019-3043-0

The complex of Plasmodium falciparum falcipain-2 protease with an (E)-chalcone-based inhibitor highlights a novel, small, molecule-binding site
Cited by: 17
Author(s): Jonathan Machin, A.L. Kantsadi, Ioannis Vakonakis
Software Mentions: 1
Published: over 6 years ago

10.1186/s12936-018-2455-6

Strain-transcending neutralization of malaria parasite by antibodies against Plasmodium falciparum enolase
Cited by: 10
Author(s): Sneha Dutta, Aneesha G. Tewari, Chinthapalli Balaji, Reena Verma, Anasuya Moitra, Mamta Yadav, Prakhar Agrawal, Dinkar Sahal, Gotam K. Jarori
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12936-017-2140-1

Functional analysis of Plasmodium falciparum subpopulations associated with artemisinin resistance in Cambodia
Cited by: 17
Author(s): Ankit Dwivedi, Christelle Reynès, Alfred A. Kuehn, Daniel B. Roche, Nimol Khim, Maxime Hebrard, Sylvain Milanesi, Éric Rivals, Roger Frutos, Didier Ménard, Choukri Ben Mamoun, Jacques Colinge, Emmanuel Cornillot
Software Mentions: 1
Published: over 8 years ago

10.1186/s12936-019-2971-z

Enhanced uptake, high selective and microtubule disrupting activity of carbohydrate fused pyrano-pyranones derived from natural coumarins attributes to its anti-malarial potential
Cited by: 6
Author(s): Sonal Gupta, Juveria Khan, Priti Kumari, Chintam Narayana, Rajagopal Ayana, Malabika Chakrabarti, Ram Sagar, Shailja Singh
Software Mentions: 1
Published: almost 7 years ago

10.1155/2014/642391

Bioinformatic Identification of Peptidomimetic-Based Inhibitors againstPlasmodium falciparumAntigen AMA1
Cited by: 7
Author(s): Asrar Alam
Software Mentions: 1
Published: over 11 years ago

10.3390/md18050256

Graph-Directed Approach for Downselecting Toxins for Experimental Structure Determination
Cited by: 3
Author(s): Rachael A. Mansbach, Srirupa Chakraborty, Timothy Travers, S. Gnanakaran
Software Mentions: 1
Published: about 6 years ago

10.3390/md18010032

Elucidation of a Unique Pattern and the Role of Carbohydrate Binding Module of an Alginate Lyase
Cited by: 16
Author(s): Fu Hu, Benwei Zhu, Qian Li, Heng Yin, Yun Sun, Zhong Yao, Dengming Ming
Software Mentions: 1
Published: over 6 years ago

10.3390/md17060378

Rational Design of Alginate Lyase from Microbulbifer sp. Q7 to Improve Thermal Stability
Cited by: 27
Author(s): Min Yang, Suxiao Yang, Zhe-Min Liu, Nannan Li, Li Li, Haijin Mou
Software Mentions: 1
Published: about 7 years ago

10.3390/md18010010

Proapoptotic Index Evaluation of Two Synthetic Peptides Derived from the Coneshell Californiconus californicus in Lung Cancer Cell Line H1299
Cited by: 4
Author(s): Irasema Oroz-Parra, Carolina Álvarez-Delgado, Karla Cervantes-Luévano, Salvador Dueñas, Alexei F. Licea-Navarro
Software Mentions: 1
Published: over 6 years ago

10.3390/md19080451

Antimicrobial Activity and Action Mechanisms of Arg-Rich Short Analog Peptides Designed from the C-Terminal Loop Region of American Oyster Defensin (AOD)
Cited by: 7
Author(s): Jung-Kil Seo, Dong-Gyun Kim, Jieun Lee, Kwon-Sam Park, Inah Lee, Ki-Young Lee, Young‐Ok Kim, Bo‐Hye Nam
Software Mentions: 1
Published: about 5 years ago

10.3390/md19030176

A Crustin from Hydrothermal Vent Shrimp: Antimicrobial Activity and Mechanism
Cited by: 19
Author(s): Yujian Wang, Jian Zhang, Yuanyuan Sun, Li Sun
Software Mentions: 1
Published: over 5 years ago

10.3390/md16080258

Biochemical Characterization and Degradation Pattern of a Novel Endo-Type Bifunctional Alginate Lyase AlyA from Marine Bacterium Isoptericola halotolerans
Cited by: 15
Author(s): Benwei Zhu, Limin Ning, Yucui Jiang, Lin Ge
Software Mentions: 1
Published: about 8 years ago

10.3390/md16060215

Effect of Methionine Oxidation and Substitution of α-Conotoxin TxID on α3β4 Nicotinic Acetylcholine Receptor
Cited by: 6
Author(s): Jie Ren, Rui Li, Jiong Ning, Xiaopeng Zhu, Dongting Zhangsun, Yong Wu
Software Mentions: 1
Published: about 8 years ago

10.3390/md16110418

Loss of Function in Zeaxanthin Epoxidase of Dunaliella tertiolecta Caused by a Single Amino Acid Mutation within the Substrate-Binding Site
Cited by: 5
Author(s): Minjae Kim, Jahyo Kang, Yongsoo Kang, Beom Sik Kang, EonSeon Jin
Software Mentions: 1
Published: almost 8 years ago

10.3390/md15010013

Biochemical and Structural Insights into a Novel Thermostable β-1,3-Galactosidase from Marinomonas sp. BSi20414
Cited by: 17
Author(s): Haitao Ding, Qian Zeng, Lili Zhou, Yong Yu, Bin Chen
Software Mentions: 1
Published: over 9 years ago

10.3390/md17020108

Eckol as a Potential Therapeutic against Neurodegenerative Diseases Targeting Dopamine D3/D4 Receptors
Cited by: 23
Author(s): Pradeep Paudel, Su Hui Seong, Sangwook Wu, Suhyun Park, Hyun Ah Jung, Jae Sue Choi
Software Mentions: 1
Published: over 7 years ago

10.3390/md17120669

Ribbon α-Conotoxin KTM Exhibits Potent Inhibition of Nicotinic Acetylcholine Receptors
Cited by: 2
Author(s): Leanna A. Marquart, Matthew Turner, Lisa Warner, Matthew D. King, James R. Groome, Owen M. McDougal
Software Mentions: 1
Published: over 6 years ago

10.3390/md12052970

Conotoxins Targeting Nicotinic Acetylcholine Receptors: An Overview
Cited by: 132
Author(s): Eline Lebbe, Steve Peigneur, Isuru Wijesekara, Jan Tytgat
Software Mentions: 1
Published: about 12 years ago

10.3390/md18100495

Astaxanthin Inhibits p70 S6 Kinase 1 Activity to Sensitize Insulin Signaling
Cited by: 5
Author(s): Chunmei Li, Bixia Ma, Junhong Chen, Yoonhwa Jeong, Xiulong Xu
Software Mentions: 1
Published: almost 6 years ago

10.3390/md15100318

Identification and Characterization of an Isoform Antifreeze Protein from the Antarctic Marine Diatom, Chaetoceros neogracile and Suggestion of the Core Region
Cited by: 8
Author(s): Minjae Kim, Yunho Gwak, Woo‐Sik Jung, EonSeon Jin
Software Mentions: 1
Published: almost 9 years ago

10.3390/md12010214

First Report of a Peroxiredoxin Homologue in Jellyfish: Molecular Cloning, Expression and Functional Characterization of CcPrx4 from Cyanea capillata
Cited by: 17
Author(s): Zengliang Ruan, Guoyan Liu, Beilei Wang, Yonghong Zhou, Jia Lu, Qianqian Wang, Jie Zhao, Liming Zhang
Software Mentions: 1
Published: over 12 years ago

10.3390/md12063091

Marine and Semi-Synthetic Hydroxysteroids as New Scaffolds for Pregnane X Receptor Modulation
Cited by: 12
Author(s): Valentina Sepe, Francesco Saverio Di Leva, Claudio D’Amore, Carmen Festa, Simona De Marino, Barbara Renga, Maria Valeria D’Auria, Ettore Novellino, Vittorio Limongelli, Lisette D’Souza, Mahesh S. Majik, Angela Zampella, Stefano Fiorucci
Software Mentions: 1
Published: about 12 years ago

10.3390/md16120518

Synergistic AML Cell Death Induction by Marine Cytotoxin (+)-1(R), 6(S), 1’(R), 6’(S), 11(R), 17(S)-Fistularin-3 and Bcl-2 Inhibitor Venetoclax
Cited by: 14
Author(s): Cristina Florean, Kyung Rok Kim, Michaël Schnekenburger, Hyun-Jung Kim, Céline Moriou, Cécile Debitus, Mario Dicato, Ali Al‐Mourabit, Byung Woo Han, Marc Diederich
Software Mentions: 1
Published: over 7 years ago

10.3390/md17030142

d-Amino Acid Substitution of α-Conotoxin RgIA Identifies its Critical Residues and Improves the Enzymatic Stability
Cited by: 19
Author(s): Jie Ren, Xiaopeng Zhu, Pan Xu, Rui Li, Ying Fu, Shuai Dong, Dongting Zhangsun, Yong Wu, Sulan Luo
Software Mentions: 1
Published: over 7 years ago

10.3390/md16100359

A Novel Cold-Adapted Leucine Dehydrogenase from Antarctic Sea-Ice Bacterium Pseudoalteromonas sp. ANT178
Cited by: 8
Author(s): Yatong Wang, Yanhua Hou, Yifan Wang, Lu Zheng, Xianlei Xu, Kang Cheng Pan, Rongqi Li, Quanfu Wang
Software Mentions: 1
Published: almost 8 years ago

10.3390/md19010012

Preparation, COX-2 Inhibition and Anticancer Activity of Sclerotiorin Derivatives
Cited by: 12
Author(s): Tao Chen, Yucong Huang, Junxian Hong, Xikang Wei, Fang Zeng, Jialin Li, Geting Ye, Jie Yuan, Yuhua Long
Software Mentions: 1
Published: over 5 years ago

Projects: pypi: PyMOL

Science Score: 90/100

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Papers Mentioning PyMOL 8,266