10.1186/1758-2946-3-2

Prediction of cyclin-dependent kinase 2 inhibitor potency using the fragment molecular orbital method
Cited by: 101
Author(s): Michael P. Mazanetz, Osamu Ichihara, Richard Law, Mark Whittaker
Software Mentions: 1
Published: over 15 years ago

10.1186/1758-2946-1-6

Combining docking with pharmacophore filtering for improved virtual screening
Cited by: 48
Author(s): Megan L. Peach, Marc C. Nicklaus
Software Mentions: 1
Published: about 17 years ago

10.1186/1758-2946-5-36

The good, the bad and the dubious: VHELIBS, a validation helper for ligands and binding sites
Cited by: 42
Author(s): Adrià Ceretó-Massagué, María José Ojeda, Robbie P. Joosten, Cristina Valls, Miquel Mulero, M. Josepa Salvadó, Anna Arola‐Arnal, Lluís Arola, Santiago Garcı́a-Vallvé, Gerard Pujadas
Software Mentions: 1
Published: about 13 years ago

10.1186/1758-2946-5-40

LeView: automatic and interactive generation of 2D diagrams for biomacromolecule/ligand interactions
Cited by: 14
Author(s): Ségolène Caboche
Software Mentions: 1
Published: almost 13 years ago

10.1186/1758-2946-5-39

MOLE 2.0: advanced approach for analysis of biomacromolecular channels
Cited by: 239
Author(s): David Sehnal, Radka Svobodová Vařeková, Karel Berka, Lukáš Pravda, Veronika Navrátilová, Pavel Banáš, Crina-Maria Ionescu, Michal Otyepka, Jaroslav Koča
Software Mentions: 1
Published: almost 13 years ago

10.1186/1758-2946-6-14

PharmDock: a pharmacophore-based docking program
Cited by: 38
Author(s): Bingjie Hu, Markus A. Lill
Software Mentions: 1
Published: over 12 years ago

10.1186/s13321-016-0160-4

Jmol SMILES and Jmol SMARTS: specifications and applications
Cited by: 24
Author(s): Robert M. Hanson
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13321-018-0285-8

P2Rank: machine learning based tool for rapid and accurate prediction of ligand binding sites from protein structure
Cited by: 168
Author(s): Radoslav Krivák, David Hoksza
Software Mentions: 1
Published: almost 8 years ago

10.1186/2043-9113-1-16

Discovering and validating unknown phospho-sites from p38 and HuR protein kinases in vitro by Phosphoproteomic and Bioinformatic tools
Cited by: 11
Author(s): Elena López, I. López, Julia Sequí, Antônio Walter Ferreira
Software Mentions: 1
Published: over 15 years ago

10.1007/s10875-021-00981-0

Novel ADA2 Compound Heterozygous Mutations Resulting in Deficiency of Adenosine Deaminase 2 in a Pair of Siblings
Cited by: 2
Author(s): Li Guo, Jun Wang, Yang Xinghui, Rongjun Zheng, Natalie Deuitch, Panfeng Tao, Qing Zhou
Software Mentions: 1
Published: over 5 years ago

10.1172/JCI85679

Hotspot autoimmune T cell receptor binding underlies pathogen and insulin peptide cross-reactivity
Cited by: 111
Author(s): David K. Cole, Anna Bulek, Garry Dolton, Andrea J. Schauenberg, Barbara Szomolay, William Rittase, Andrew Trimby, Prithiviraj Jothikumar, Anna Fuller, Ania Skowera, Jamie Rossjohn, Cheng Zhu, John J. Miles, Mark Peakman, Linda Wooldridge, P.J. Rizkallah, Andrew K. Sewell
Software Mentions: 1
Published: about 10 years ago

10.3390/jcm8122117

FAD/NADH Dependent Oxidoreductases: From Different Amino Acid Sequences to Similar Protein Shapes for Playing an Ancient Function
Cited by: 33
Author(s): Lucia Trisolini, Nicola Gambacorta, Ruggiero Gorgoglione, Michele Montaruli, Luna Laera, Francesco Colella, Mariateresa Volpicella, Anna Grassi, Ciro Leonardo Pierri
Software Mentions: 1
Published: over 6 years ago

10.3390/jcm10194501

Pathogenesis of IgA Nephropathy: Current Understanding and Implications for Development of Disease-Specific Treatment
Cited by: 21
Author(s): Barbora Knoppová, Colin Reily, R. Glenn King, Bruce A. Julian, Jan Novák, Todd Green
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.jctube.2021.100246

In silico identification of novel chemical compounds with antituberculosis activity for the inhibition of InhA and EthR proteins from Mycobacterium tuberculosis
Cited by: 6
Author(s): Sajal Kumar Halder, Fatiha Elma
Software Mentions: 1
Published: about 5 years ago

10.1007/s10822-017-0055-0

Binding free energy predictions of farnesoid X receptor (FXR) agonists using a linear interaction energy (LIE) approach with reliability estimation: application to the D3R Grand Challenge 2
Cited by: 13
Author(s): Eko Aditya Rifai, Marc van Dijk, Nico Vermeulen, Daan P. Geerke
Software Mentions: 1
Published: almost 9 years ago

10.1007/s10822-013-9645-7

Molecular dynamics simulations give insight into d-glucose dioxidation at C2 and C3 by Agaricus meleagris pyranose dehydrogenase
Cited by: 28
Author(s): Michael Graf, Urban Bren, Dietmar Haltrich, Chris Oostenbrink
Software Mentions: 1
Published: over 13 years ago

10.1007/s10822-016-9913-4

Kinetic barriers in the isomerization of substituted ureas: implications for computer-aided drug design
Cited by: 7
Author(s): Johannes R. Loeffler, Emanuel S. R. Ehmki, Julian E. Fuchs, Klaus R. Liedl
Software Mentions: 1
Published: over 10 years ago

10.1186/2251-6581-13-49

Glycated albumin: an overview of the In Vitro models of an In Vivo potential disease marker
Cited by: 106
Author(s): Amir Arasteh, Sara Farahi, Mehran Habibi-Rezaei, Ali Akbar Moosavi-Movahedi
Software Mentions: 1
Published: over 12 years ago

10.1155/2013/737485

The Missing Heritability in T1D and Potential New Targets for Prevention
Cited by: 7
Author(s): Brian G. Pierce, Ryan Eberwine, Janelle A. Noble, Michael P. Habib, Hennady P. Shulha, Zhiping Weng, Elizabeth P. Blankenhorn, John P. Mordes
Software Mentions: 1
Published: over 13 years ago

10.1155/2021/5477941

Mechanism of Cordyceps Cicadae in Treating Diabetic Nephropathy Based on Network Pharmacology and Molecular Docking Analysis
Cited by: 6
Author(s): Yi Qian, Xiaofan Sun, Xin Wang, Yang Xin, Mengyao Fan, Jie Zhong, Zejun Pei, Jing Guo
Software Mentions: 1
Published: almost 5 years ago

10.1007/s40618-021-01498-4

Conceptualization of functional single nucleotide polymorphisms of polycystic ovarian syndrome genes: an in silico approach
Cited by: 11
Author(s): B. Subramanya R. Prabhu, SH Kanchamreddy, Ananya Sharma, SK Bhat, Parvati Bhat, Shama Prasada Kabekkodu, Kapaettu Satyamoorthy, S Padmalatha
Software Mentions: 1
Published: over 5 years ago

10.1155/2018/3984316

Human Genetic Markers and Structural Prediction ofPlasmodium falciparumMultidrug Resistance Gene(pfmdr1)for Ligand Binding in Pregnant Women Attending General Hospital Minna
Cited by: 5
Author(s): Bashir Lawal, Oluwatosin Kudirat Shittu, Abdulkadir Abubakar, Adamu Yusuf Kabiru
Software Mentions: 1
Published: over 8 years ago

10.1080/14756366.2017.1419217

Design and synthesis of naphthalimide group-bearing thioglycosides as novel β-<i>N</i>-acetylhexosaminidases inhibitors
Cited by: 13
Author(s): Shengqiang Shen, Wei Chen, Lili Dong, Qing Yang, Huizhe Lu, Jianjun Zhang
Software Mentions: 1
Published: over 8 years ago

10.1080/14756366.2017.1380637

Selectivity analyses of γ-benzylidene digoxin derivatives to different Na,K-ATPase α isoforms: a molecular docking approach
Cited by: 12
Author(s): Marco Túlio C. Pessôa, Silmara L.G. Alves, Alex Gutterres Taranto, José Augusto Ferreira Perez Villar, Gustavo Blanco, Leandro A. Barbosa
Software Mentions: 1
Published: almost 9 years ago

10.1080/14756366.2018.1458030

Kinetic and structural studies on the interactions of <i>Torpedo californica</i> acetylcholinesterase with two donepezil-like rigid analogues
Cited by: 21
Author(s): Rosanna Caliandro, Alessandro Pesaresi, Luca Cariati, Antonio Procopio, Manuela Oliverio, Doriano Lamba
Software Mentions: 1
Published: over 8 years ago

10.1080/14756366.2018.1430691

Synthesis, pharmacology and molecular docking on multifunctional tacrine-ferulic acid hybrids as cholinesterase inhibitors against Alzheimer’s disease
Cited by: 46
Author(s): Jie Zhu, Hongyu Yang, Yao Chen, Hongzhi Lin, Qi Li, Jun Mo, Yaoyao Bian, Yuqiong Pei, Haopeng Sun
Software Mentions: 1
Published: over 8 years ago

10.1080/14756366.2017.1355791

Inhibition of dengue virus replication by novel inhibitors of RNA-dependent RNA polymerase and protease activities
Cited by: 28
Author(s): Sveva Pelliccia, Yu-Hsueh Wu, Antonio Coluccia, Giuseppe La Regina, Chih‐Hua Tseng, Valeria Famiglini, Domiziana Masci, John Hiscott, Jin‐Ching Lee, Romano Silvestri
Software Mentions: 1
Published: over 9 years ago

10.1080/14756366.2017.1406485

New cyclopentaquinoline hybrids with multifunctional capacities for the treatment of Alzheimer’s disease
Cited by: 16
Author(s): Kamila Czarnecka, Małgorzata Girek, Karolina Maciejewska, Robert Skibiński, Jakub Jończyk, Marek Bajda, Jacek Kabziński, Przemysław Sołowiej, Ireneusz Majsterek, Paweł Szymański
Software Mentions: 1
Published: over 8 years ago

10.1080/14756366.2018.1530224

Synthesis, preliminarily biological evaluation and molecular docking study of new Olaparib analogues as multifunctional PARP-1 and cholinesterase inhibitors
Cited by: 17
Author(s): Cheng Zhi Gao, Dong Wang, Zhiwen Cui, Qiong Yuan, Xia Hu, Qing Wu, Xianlin Han, Yao Xu, Zhen Li Min
Software Mentions: 1
Published: over 7 years ago

10.1080/14756366.2019.1609953

Molecular modeling studies on the interactions of 7-methoxytacrine-4-pyridinealdoxime, 4-PA, 2-PAM, and obidoxime with VX-inhibited human acetylcholinesterase: a near attack conformation approach
Cited by: 17
Author(s): Jorge Alberto Valle da Silva, Eugenie Nepovimová, Teodorico C. Ramalho, Kamil Kuča, Tanos C. C. França
Software Mentions: 1
Published: over 7 years ago

10.1080/14756366.2019.1616182

<i>Leishmania infantum</i> arginase: biochemical characterization and inhibition by naturally occurring phenolic substances
Cited by: 25
Author(s): Andreza R. Garcia, Danielle Maria Perpétua de Oliveira, Aná Claudia F. Amaral, Jéssica Barbosa de Jesus, Ana Carolina Rennó Sodero, Alessandra Mendonça Teles de Souza, Claudiu T. Supuran, Alane Beatriz Vermelho, Igor A. Rodrigues, Anderson S. Pinheiro
Software Mentions: 1
Published: over 7 years ago

10.1080/14756366.2019.1618292

Seeking new approach for therapeutic treatment of cholera disease via inhibition of bacterial carbonic anhydrases: experimental and theoretical studies for sixteen benzenesulfonamide derivatives
Cited by: 5
Author(s): Rosaria Gitto, Laura De Luca, Francesca Mancuso, Sonia Del Prete, Daniela Vullo, Claudiu T. Supuran, Clemente Capasso
Software Mentions: 1
Published: over 7 years ago

10.1080/14756366.2019.1661401

Novel tyrosinase inhibitory peptide with free radical scavenging ability
Cited by: 29
Author(s): Zhiwei Shen, Yujiao Wang, Zhen Guo, Tingyuan Tan, Yi Zhang
Software Mentions: 1
Published: over 7 years ago

10.1080/14756366.2019.1693703

Discovery of talmapimod analogues as polypharmacological anti-inflammatory agents
Cited by: 7
Author(s): Wandong Liu, Hou Cai-yun, Jiaming Li, Xiaodong Ma, Yanchun Zhang, Mengqi Hu, Yuanzheng Huang
Software Mentions: 1
Published: over 6 years ago

10.1080/14756366.2019.1710501

Synthesis, <i>in vitro</i> screening and molecular docking of isoquinolinium-5-carbaldoximes as acetylcholinesterase and butyrylcholinesterase reactivators
Cited by: 15
Author(s): Dávid Maliňák, Rafael Doležal, Vendula Hepnarová, Miroslava Hozova, Rudolf Andrýs, Petr Bzonek, Veronika Račáková, Jan Korábečný, Lukáš Górecki, Eva Mezeiová, Miroslav Psotka, Daniel Jun, Kamil Kuča, Kamil Musílek
Software Mentions: 1
Published: over 6 years ago

10.1080/14756366.2019.1705290

Novel CDKs inhibitors for the treatment of solid tumour by simultaneously regulating the cell cycle and transcription control
Cited by: 17
Author(s): Xin Wang, Kaiyuan Deng, Cheng Wang, Yao Li, Tianqi Wang, Zhi Huang, Yakun Ma, Peiqing Sun, Yi Shi, Shengyong Yang, Yan Fan, Rong Xiang
Software Mentions: 1
Published: over 6 years ago

10.1080/14756366.2020.1801671

Cytotoxic substituted indolizines as new colchicine site tubulin polymerisation inhibitors
Cited by: 10
Author(s): Monica-Cornelia Sardaru, Anda Mihaela Craciun, Cristina M. Al Matarneh, Isabela Andreea Sandu, Roxana-Maria Amărandi, Lăcrămioara Popovici, Catalina Ionica Ciobanu, Dragos Peptanariu, Mariana Pinteală, Ionel I. Mangalagiu, Ramona Danac
Software Mentions: 1
Published: over 6 years ago

10.1080/14756366.2020.1816996

The structural basis for the selectivity of sulfonamido dicarbaboranes toward cancer-associated carbonic anhydrase IX
Cited by: 7
Author(s): Michaël Kugler, Josef Holub, J. Brynda, Klára Pospíšilová, Suzan El Anwar, Dmytro Bavol, M. Havránek, Vlastimil Král, Milan Fábry, Bohumı́r Grüner, P. Řezáčová
Software Mentions: 1
Published: over 6 years ago

10.1080/14756366.2020.1816999

Rational design of small molecules able to inhibit α-synuclein amyloid aggregation for the treatment of Parkinson’s disease
Cited by: 16
Author(s): Serena Vittorio, Ilenia Adornato, Rosaria Gitto, Samuel Peña-Díaz, Salvador Ventura, Laura De Luca
Software Mentions: 1
Published: over 6 years ago

10.1080/14756366.2020.1826941

Synthesis, <i>in vitro</i> inhibitory activity, kinetic study and molecular docking of novel <i>N</i>-alkyl–deoxynojirimycin derivatives as potential α-glucosidase inhibitors
Cited by: 14
Author(s): Ping Lin, Jiacheng Zeng, Jiguang Chen, Xu-Liang Nie, Erdong Yuan, Xiaoqiang Wang, Da-Yong Peng, Zhong‐Ping Yin
Software Mentions: 1
Published: over 6 years ago

10.1080/14756366.2020.1835882

Multidirectional <i>in vitro</i> and <i>in cellulo</i> studies as a tool for identification of multi-target-directed ligands aiming at symptoms and causes of Alzheimer’s disease
Cited by: 9
Author(s): Natalia Szałaj, Justyna Godyń, Jakub Jończyk, Anna Pasieka, Dawid Panek, Tomasz Wichur, Krzysztof Więckowski, Paula Zaręba, Marek Bajda, Anja Pišlar, Barbara Malawska, Raimon Sabaté, Anna Więckowska
Software Mentions: 1
Published: over 6 years ago

10.1080/14756366.2020.1841182

The SNAP-<i>tag</i> technology revised: an effective <i>chemo-enzymatic approach</i> by using a universal azide-based substrate
Cited by: 6
Author(s): Rosa Merlo, Diego Caprioglio, Michele Cillo, Anna Valenti, Rosanna Mattossovich, Castrese Morrone, Alberto Massarotti, Franca Rossi, Riccardo Miggiano, Antonio Leonardi, Alberto Minassi, Giuseppe Perugino
Software Mentions: 1
Published: almost 6 years ago

10.1080/14756366.2020.1844680

Inhibitory evaluation of <i>Curculigo latifolia</i> on α-glucosidase, DPP (IV) and <i>in vitro</i> studies in antidiabetic with molecular docking relevance to type 2 diabetes mellitus
Cited by: 16
Author(s): Nur Athirah Zabidi, Nur Akmal Ishak, Muhajir Hamid, Siti Efliza Ashari, Muhammad Alif Mohammad Latif
Software Mentions: 1
Published: over 5 years ago

10.1080/14756366.2020.1786821

Synthesis, computational studies and assessment of <i>in vitro</i> inhibitory activity of umbelliferon-based compounds against tumour-associated carbonic anhydrase isoforms IX and XII
Cited by: 5
Author(s): Francesca Mancuso, Laura De Luca, Claudiu T. Supuran, Sonia Del Prete, Clemente Capasso, Rosaria Gitto
Software Mentions: 1
Published: over 6 years ago

10.1080/14756366.2020.1869954

Pyridinium-2-carbaldoximes with quinolinium carboxamide moiety are simultaneous reactivators of acetylcholinesterase and butyrylcholinesterase inhibited by nerve agent surrogates
Cited by: 3
Author(s): Hyun Myung Lee, Rudolf Andrýs, Jakub Jończyk, Kyuneun Kim, Avinash G Vishakantegowda, Dávid Maliňák, Adam Skarka, Monika Schmidt, Michaela Vašková, Kamil Łątka, Marek Bajda, Young‐Sik Jung, Barbara Malawska, Kamil Musílek
Software Mentions: 1
Published: over 5 years ago

10.1080/14756366.2021.1875459

Design, synthesis and <i>in vitro</i> and <i>in vivo</i> biological evaluation of flurbiprofen amides as new fatty acid amide hydrolase/cyclooxygenase-2 dual inhibitory potential analgesic agents
Cited by: 3
Author(s): Alessandro Deplano, J.‐A. Karlsson, Federica Moraca, Michael Svensson, Claudia Cristiano, Carmine Marco Morgillo, Christopher J. Fowler, Roberto Russo, Bruno Catalanotti, Valentina Onnis
Software Mentions: 1
Published: over 5 years ago

10.1080/14756366.2021.1936514

Synthesis and biological evaluation of 4-phenoxy-phenyl isoxazoles as novel acetyl-CoA carboxylase inhibitors
Cited by: 2
Author(s): Xin Wu, Yizhi Yu, Tonghui Huang
Software Mentions: 1
Published: over 5 years ago

10.1080/14756366.2021.1948542

Identification of imidazo[4,5-c]pyridin-2-one derivatives as novel Src family kinase inhibitors against glioblastoma
Cited by: 3
Author(s): Lishun Zhang, Zhilu Yang, Huiting Sang, Ying Jiang, Mingfeng Zhou, Chuan Huang, Chunhui Huang, Xia Wu, Tingting Zhang, Xingmei Zhang, Shanhe Wan, Jiajie Zhang
Software Mentions: 1
Published: over 5 years ago

10.1093/jxb/eru053

Positive selection of Kranz and non-Kranz C4 phosphoenolpyruvate carboxylase amino acids in Suaedoideae (Chenopodiaceae)
Cited by: 23
Author(s): Josh Rosnow, Gerald E. Edwards, Eric H. Roalson
Software Mentions: 1
Published: over 12 years ago

10.1093/jxb/eru383

Computational and genetic evidence that different structural conformations of a non-catalytic region affect the function of plant cellulose synthase
Cited by: 16
Author(s): Erin Slabaugh, Latsavongsakda Sethaphong, Chaowen Xiao, Joshua Amick, Charles T. Anderson, Candace H. Haigler, Yaroslava G. Yingling
Software Mentions: 1
Published: almost 12 years ago

10.1093/jxb/erv268

Maize EMBRYO SAC family peptides interact differentially with pollen tubes and fungal cells
Cited by: 16
Author(s): Mayada Woriedh, Rainer Merkl, Thomas Dresselhaus
Software Mentions: 1
Published: about 11 years ago

10.1093/jxb/erv491

Two key polymorphisms in a newly discovered allele of the<i>Vitis vinifera TPS24</i>gene are responsible for the production of the rotundone precursor α-guaiene
Cited by: 37
Author(s): Damian Paul Drew, Trine Bundgaard Andersen, Crystal Sweetman, Birger Lindberg Møller, Christopher M. Ford, Henrik Toft Simonsen
Software Mentions: 1
Published: over 10 years ago

10.1093/jxb/erx030

Phosphorylation of the phytosulfokine peptide receptor PSKR1 controls receptor activity
Cited by: 14
Author(s): Christine Kaufmann, Michael Motzkus, Margret Sauter
Software Mentions: 1
Published: over 9 years ago

10.1093/jxb/erx113

The 2-oxoglutarate-dependent dioxygenase superfamily participates in tanshinone production in Salvia miltiorrhiza
Cited by: 38
Author(s): Zhichao Xu, Jingyuan Song
Software Mentions: 1
Published: over 9 years ago

10.1093/jxb/erx070

Crystal structures of β-carboxysome shell protein CcmP: ligand binding correlates with the closed or open central pore
Cited by: 37
Author(s): Anna-Maria Larsson, Dirk Hasse, K. Valegård, Ingemar Andersson
Software Mentions: 1
Published: over 9 years ago

10.1093/jxb/erx115

β-Carboxysome bioinformatics: identification and evolution of new bacterial microcompartment protein gene classes and core locus constraints
Cited by: 33
Author(s): Maik S. Sommer, Fei Cai, Matthew R. Melnicki, Cheryl A. Kerfeld
Software Mentions: 1
Published: over 9 years ago

10.1093/jxb/ery036

The elusive ligand complexes of the DWARF14 strigolactone receptor
Cited by: 34
Author(s): Gunilla Carlsson, Dirk Hasse, Francesca Cardinale, Cristina Prandi, Ingemar Andersson
Software Mentions: 1
Published: over 8 years ago

10.1093/jxb/ery099

MADS transcription factors cooperate: complexities of complex formation
Cited by: 13
Author(s): Véronique Hugouvieux, Chloé Zubieta
Software Mentions: 1
Published: over 8 years ago

10.1093/jxb/ery351

<i>Verticillium dahliae</i>PevD1, an Alt a 1-like protein, targets cotton PR5-like protein and promotes fungal infection
Cited by: 44
Author(s): Yi Zhang, Yin Gao, Yingbo Liang, Yuchen Dong, Xiufen Yang, Dewen Qiu
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.kint.2020.01.045

Long-term outcomes and response to treatment in diacylglycerol kinase epsilon nephropathy
Cited by: 29
Author(s): Vicky Brocklebank, Gurinder Kumar, Alexander J. Howie, Jayanthi Chandar, David V. Milford, Janet Craze, Jonathan Evans, Eric Finlay, Michael Freundlich, Daniel P. Gale, Carol Inward, Martin Mraz, Caroline Jones, William Wong, Stephen D. Marks, John Connolly, Bronte M. Corner, Kate Smith-Jackson, Patrick R. Walsh, Kevin J. Marchbank, Claire L. Harris, Valerie Wilson, Edwin K.S. Wong, Michal Malina, Sally Johnson, Neil Sheerin, David Kavanagh
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.ppat.0030069

Structure of GrlR and the Implication of Its EDED Motif in Mediating the Regulation of Type III Secretion System in EHEC
Cited by: 31
Author(s): Chacko Jobichen, Mo Li, Gal Yerushalmi, Yih Wan Tan, Yu Keung Mok, Ilan Rosenshine, Ka Yin Leung, J. Sivaraman
Software Mentions: 1
Published: about 19 years ago

10.1371/journal.ppat.0040005

Structure and Function of A41, a Vaccinia Virus Chemokine Binding Protein
Cited by: 65
Author(s): Mohammad W. Bahar, Julia C. Kenyon, Mike M. Pütz, Nicola G. A. Abrescia, James E. Pease, Emma L. Wise, David I. Stuart, Geoffrey L. Smith, Jonathan M. Grimes
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.ppat.1000046

The Lentiviral Integrase Binding Protein LEDGF/p75 and HIV-1 Replication
Cited by: 211
Author(s): Alan Engelman, Peter Cherepanov
Software Mentions: 1
Published: over 18 years ago

10.1038/srep18543

An Intriguing Correlation Based on the Superimposition of Residue Pairs with Inhibitors that Target Protein-Protein Interfaces
Cited by: 2
Author(s): Masakazu Nakadai, Shuta Tomida, Kazuhisa Sekimizu
Software Mentions: 1
Published: over 10 years ago

10.1038/srep18644

Structural characterization of eRF1 mutants indicate a complex mechanism of stop codon recognition
Cited by: 2
Author(s): Shubhadra Pillay, Yan Li, Leo Wong, Konstantin Pervushin
Software Mentions: 1
Published: over 10 years ago

10.1038/srep19095

Computational screen and experimental validation of anti-influenza effects of quercetin and chlorogenic acid from traditional Chinese medicine
Cited by: 45
Author(s): Yi Li, Jin Zhao, Lichun Dong, Li Shen, Shengbo Huang, Jingjing Tang, Jie Duan, Fang Fang, Yuelong Huang, Haiyan Chang, Ze Chen, Ran Zhang
Software Mentions: 1
Published: over 10 years ago

10.1038/srep19522

Structure of the transmembrane domain of human nicastrin-a component of γ-secretase
Cited by: 11
Author(s): Yan Li, Lynette Liew, Qingxin Li, CongBao Kang
Software Mentions: 1
Published: over 10 years ago

10.1038/srep19512

Evolved hexose transporter enhances xylose uptake and glucose/xylose co-utilization in Saccharomyces cerevisiae
Cited by: 95
Author(s): Amanda Reider Apel, Mario Ouellet, Heather Szmidt-Middleton, Jay D. Keasling, Aindrila Mukhopadhyay
Software Mentions: 1
Published: over 10 years ago

10.1038/srep19681

Structural Insights into the Quaternary Catalytic Mechanism of Hexameric Human Quinolinate Phosphoribosyltransferase, a Key Enzyme in de novo NAD Biosynthesis
Cited by: 19
Author(s): Hyung‐Seop Youn, Tae Kyun Kim, Mun-Kyoung Kim, Gil Bu Kang, Jung Youn Kang, Jung‐Gyu Lee, Jin Yong An, Kyoung Ryoung Park, Young jin Lee, Young Jun Im, Jun Hyuck Lee, Soo Hyun Eom
Software Mentions: 1
Published: over 10 years ago

10.1038/srep19526

Natural HCV variants with increased replicative fitness due to NS3 helicase mutations in the C-terminal helix α18
Cited by: 14
Author(s): Claudia Stroß, Tetsuro Shimakami, Katrin Haselow, Monazza Q. Ahmad, Stefan Zeuzem, Christian Lange, Christoph Welsch
Software Mentions: 1
Published: over 10 years ago

10.1038/srep19756

The Arabidopsis glutamyl-tRNA reductase (GluTR) forms a ternary complex with FLU and GluTR-binding protein
Cited by: 15
Author(s): Ying Fang, Suping Zhao, Feilong Zhang, An Ping Zhao, Wenxia Zhang, Min Zhang, Lin Liu
Software Mentions: 1
Published: over 10 years ago

10.1038/srep20007

GTPase domain driven dimerization of SEPT7 is dispensable for the critical role of septins in fibroblast cytokinesis
Cited by: 26
Author(s): Megha Abbey, Cosima Hakim, Roopsee Anand, Juri Lafera, Axel Schambach, Andreas Kispert, Manuel H. Taft, Volkhard Kaever, Alexey Kotlyarov, Matthias Gaestel, Manoj B. Menon
Software Mentions: 1
Published: over 10 years ago

10.1038/srep20255

A Hypersweet Protein: Removal of The Specific Negative Charge at Asp21 Enhances Thaumatin Sweetness
Cited by: 29
Author(s): Tetsuya Masuda, Keisuke Ohta, Naoko Ojiro, Kazuki Murata, Bunzo Mikami, Fumito Tani, Piero Andrea Temussi, Naofumi Kitabatake
Software Mentions: 1
Published: over 10 years ago

10.1038/srep20122

Inhibition of Chikungunya Virus Replication by 1-[(2-Methylbenzimidazol-1-yl) Methyl]-2-Oxo-Indolin-3-ylidene] Amino] Thiourea(MBZM-N-IBT)
Cited by: 64
Author(s): Priyadarsee Mishra, Abhishek Kumar, Prabhudutta Mamidi, Sameer Kumar, Itishree Basantray, Tanuja Saswat, Indrani Das, Tapas Kumar Nayak, Subhasis Chattopadhyay, Bharat Bhusan Subudhi, Soma Chattopadhyay
Software Mentions: 1
Published: over 10 years ago

10.1038/srep20575

Structural basis for two-step glucose trimming by glucosidase II involved in ER glycoprotein quality control
Cited by: 31
Author(s): Tadashi Satoh, T. Toshimori, Gengwei Yan, Takumi Yamaguchi, Koichi Kato
Software Mentions: 1
Published: over 10 years ago

10.1038/srep20473

Small-molecule inhibition of PTPRZ reduces tumor growth in a rat model of glioblastoma
Cited by: 49
Author(s): Akihiro Fujikawa, Asako Nagahira, Hajime Sugawara, Kentaro Ishii, Seiichi Imajo, Masahito Matsumoto, Kazuya Kuboyama, Ryoko Suzuki, Naomi Tanga, Masanori Noda, Susumu Uchiyama, Toshiyuki Tomoo, Atsuto Ogata, Makoto Masumura, Masaharu Noda
Software Mentions: 1
Published: over 10 years ago

10.1038/srep21151

SpyRing interrogation: analyzing how enzyme resilience can be achieved with phytase and distinct cyclization chemistries
Cited by: 51
Author(s): Christopher Schoene, Samantha Bennett, Mark Howarth
Software Mentions: 1
Published: over 10 years ago

10.1038/srep20629

New insights into the mechanism of substrates trafficking in Glyoxylate/Hydroxypyruvate reductases
Cited by: 18
Author(s): Louise Lassalle, S. Engilberge, Dominique Madern, Pierre Vauclare, Bruno Franzetti, Éric Girard
Software Mentions: 1
Published: over 10 years ago

10.1038/srep21256

Evolution and comparative analysis of the bat MHC-I region
Cited by: 43
Author(s): Justin H. J. Ng, Mary Tachedjian, Janine E. Deakin, James W. Wynne, Jie Cui, Volker Häring, Ivano Broz, Honglei Chen, Katherine Belov, Lin‐Fa Wang, Michelle L. Baker
Software Mentions: 1
Published: over 10 years ago

10.1038/srep20915

Conformational plasticity of RepB, the replication initiator protein of promiscuous streptococcal plasmid pMV158
Cited by: 12
Author(s): Roeland Boer, José A. Ruiz-Masó, Manuel Rueda, Maxim V. Petoukhov, Cristina Machón, Dmitri I. Svergun, Modesto Orozco, Gloria del Solar, Miquel Coll
Software Mentions: 1
Published: over 10 years ago

10.1038/srep21375

A human β-III-spectrin spinocerebellar ataxia type 5 mutation causes high-affinity F-actin binding
Cited by: 25
Author(s): Adam W. Avery, Jonathan Crain, David D. Thomas, Thomas S. Hays
Software Mentions: 1
Published: over 10 years ago

10.1038/srep21501

Structural and biochemical characterization of an RNA/DNA binding motif in the N-terminal domain of RecQ4 helicases
Cited by: 13
Author(s): Francesca Marino, Aditya Mojumdar, Chiara Zucchelli, Anurag Bhardwaj, Emanuele Buratti, Alessandro Vindigni, Giovanna Musco, Silvia Onesti
Software Mentions: 1
Published: over 10 years ago

10.1038/srep21815

A novel mutation in TRPV3 gene causes atypical familial Olmsted syndrome
Cited by: 33
Author(s): Cheng Ni, Ming Yan, Jia Zhang, Ruhong Cheng, Jianying Liang, Dan De-zhong, Zhen Wang, Ming Li, Zhirong Yao
Software Mentions: 1
Published: over 10 years ago

10.1038/srep21385

A polyalanine peptide derived from polar fish with anti-infectious activities
Cited by: 44
Author(s): Marlon Henrique Cardoso, Suzana Meira Ribeiro, Diego O. Nolasco, César de la Fuente-Núñez, Mário R. Felício, Sónia Gonçalves, Carolina O. Matos, Luciano M. Lião, Nuno C. Santos, Robert E. W. Hancock, Octávio L. Franco, Ludovico Migliolo
Software Mentions: 1
Published: over 10 years ago

10.1038/srep22284

Evolving Methanococcoides burtonii archaeal Rubisco for improved photosynthesis and plant growth
Cited by: 66
Author(s): Robert H. Wilson, Hernán Alonso, Spencer M. Whitney
Software Mentions: 1
Published: over 10 years ago

10.1038/srep22523

Mimicking titration experiments with MD simulations: A protocol for the investigation of pH-dependent effects on proteins
Cited by: 19
Author(s): Eileen Socher, Heinrich Sticht
Software Mentions: 1
Published: over 10 years ago

10.1038/srep22527

Extended string-like binding of the phosphorylated HP1α N-terminal tail to the lysine 9-methylated histone H3 tail
Cited by: 23
Author(s): Hideaki Shimojo, Ayumi Kawaguchi, Takashi Oda, Nobuto Hashiguchi, Soichi Omori, Kei Moritsugu, Akinori Kidera, Kyoko Hiragami-Hamada, Jun‐ichi Nakayama, Mamoru Sato, Yoshifumi Nishimura
Software Mentions: 1
Published: over 10 years ago

10.1038/srep22666

Stalking influenza by vaccination with pre-fusion headless HA mini-stem
Cited by: 101
Author(s): Sophie A. Valkenburg, Vamsee Mallajosyula, Olive T. W. Li, Alex W. H. Chin, George Carnell, Nigel Temperton, Raghavan Varadarajan, Leo L. M. Poon
Software Mentions: 1
Published: over 10 years ago

10.1038/srep22885

The three-dimensional structure of Clostridium absonum 7α-hydroxysteroid dehydrogenase: new insights into the conserved arginines for NADP(H) recognition
Cited by: 22
Author(s): Deshuai Lou, Bochu Wang, Jun Tan, Lingyu Zhu, Xiaoxi Cen, Qingzhi Ji, Yue Wang
Software Mentions: 1
Published: over 10 years ago

10.1038/srep22973

Atomic visualization of a flipped-back conformation of bisected glycans bound to specific lectins
Cited by: 36
Author(s): Masamichi Nagae, Motoi Kanagawa, Kana Morita-Matsumoto, Shinya Hanashima, Yasuhiko Kizuka, Naoyuki Taniguchi, Yoshiki Yamaguchi
Software Mentions: 1
Published: over 10 years ago

10.1038/srep22894

A critical role of mevalonate for peptidoglycan synthesis in Staphylococcus aureus
Cited by: 18
Author(s): Yasuhiko Matsumoto, Jyunichiro Yasukawa, Masaki Ishii, Yohei Hayashi, Shuichi Miyazaki, Kazuhisa Sekimizu
Software Mentions: 1
Published: over 10 years ago

10.1038/srep23274

Mechanism and inhibition of human UDP-GlcNAc 2-epimerase, the key enzyme in sialic acid biosynthesis
Cited by: 30
Author(s): Sheng-Chia Chen, Chi‐Hung Huang, Shu-Jung Lai, Changju Yang, Tzu‐Hung Hsiao, Ching‐Heng Lin, Pin-Kuei Fu, Tzu‐Ping Ko, Yeh Chen
Software Mentions: 1
Published: over 10 years ago

10.1038/srep23138

Influenza A viruses escape from MxA restriction at the expense of efficient nuclear vRNP import
Cited by: 129
Author(s): Veronika Götz, Linda Magar, Dominik Dornfeld, Sebastian Giese, Anne Pohlmann, Dirk W. Höper, Byung-Whi Kong, David A. Jans, Martin Beer, Otto Haller, Martin Schwemmle
Software Mentions: 1
Published: over 10 years ago

10.1038/srep23454

Ca2+ monitoring in Plasmodium falciparum using the yellow cameleon-Nano biosensor
Cited by: 17
Author(s): Kishor Pandey, Pedro Eduardo Ferreira, Takeshi Ishikawa, Takeharu Nagai, O. Kaneko, Kazuhide Yahata
Software Mentions: 1
Published: over 10 years ago

10.1038/srep23743

Conserved differences in protein sequence determine the human pathogenicity of Ebolaviruses
Cited by: 34
Author(s): Morena Pappalardo, Miguel Juliá, Mark J. Howard, Jeremy S. Rossman, Martin Michaelis, Mark N. Wass
Software Mentions: 1
Published: over 10 years ago

10.1038/srep23605

Ligand-binding specificity and promiscuity of the main lignocellulolytic enzyme families as revealed by active-site architecture analysis
Cited by: 26
Author(s): Li Tian, Shijia Liu, Shuai Wang, Lushan Wang
Software Mentions: 1
Published: over 10 years ago

10.1038/srep23712

Structure of the Cyclic Nucleotide-Binding Homology Domain of the hERG Channel and Its Insight into Type 2 Long QT Syndrome
Cited by: 9
Author(s): Yan Li, Hui Qi Ng, Qingxin Li, CongBao Kang
Software Mentions: 1
Published: over 10 years ago

10.1038/srep23793

Design, synthesis, crystallization and biological evaluation of new symmetrical biscationic compounds as selective inhibitors of human Choline Kinase α1 (ChoKα1)
Cited by: 21
Author(s): Santiago Schiaffino-Ortega, Eleonora Baglioni, Elena Mariotto, Roberta Bortolozzi, Lucía Serrán-Aguilera, Pablo Ríos-Marco, María P. Carrasco-Jiménez, Miguel Á. Gallo, R. Hurtado‐Guerrero, Carmen Marco, Giuseppe Basso, Giampietro Viola, Antonio Entrena, Carlota Lopez Cara
Software Mentions: 1
Published: over 10 years ago

10.1038/srep23894

Molecular Interactions between Tarantula Toxins and Low-Voltage-Activated Calcium Channels
Cited by: 19
Author(s): Autoosa Salari, Benjamin S. Vega, Lorin S. Milescu, Mirela Milescu
Software Mentions: 1
Published: over 10 years ago

10.1038/srep24587

Synergistic Modification Induced Specific Recognition between Histone and TRIM24 via Fluctuation Correlation Network Analysis
Cited by: 15
Author(s): Jinmai Zhang, Huajie Luo, Hao Líu, Wei Ye, Ray Luo, Haifeng Chen
Software Mentions: 1
Published: over 10 years ago