10.1080/14756366.2020.1869954

Pyridinium-2-carbaldoximes with quinolinium carboxamide moiety are simultaneous reactivators of acetylcholinesterase and butyrylcholinesterase inhibited by nerve agent surrogates
Cited by: 3
Author(s): Hyun Myung Lee, Rudolf Andrýs, Jakub Jończyk, Kyuneun Kim, Avinash G Vishakantegowda, Dávid Maliňák, Adam Skarka, Monika Schmidt, Michaela Vašková, Kamil Łątka, Marek Bajda, Young‐Sik Jung, Barbara Malawska, Kamil Musílek
Software Mentions: 1
Published: over 5 years ago

10.1080/14756366.2021.1875459

Design, synthesis and <i>in vitro</i> and <i>in vivo</i> biological evaluation of flurbiprofen amides as new fatty acid amide hydrolase/cyclooxygenase-2 dual inhibitory potential analgesic agents
Cited by: 3
Author(s): Alessandro Deplano, J.‐A. Karlsson, Federica Moraca, Michael Svensson, Claudia Cristiano, Carmine Marco Morgillo, Christopher J. Fowler, Roberto Russo, Bruno Catalanotti, Valentina Onnis
Software Mentions: 1
Published: over 5 years ago

10.1080/14756366.2021.1936514

Synthesis and biological evaluation of 4-phenoxy-phenyl isoxazoles as novel acetyl-CoA carboxylase inhibitors
Cited by: 2
Author(s): Xin Wu, Yizhi Yu, Tonghui Huang
Software Mentions: 1
Published: over 5 years ago

10.1080/14756366.2021.1948542

Identification of imidazo[4,5-c]pyridin-2-one derivatives as novel Src family kinase inhibitors against glioblastoma
Cited by: 3
Author(s): Lishun Zhang, Zhilu Yang, Huiting Sang, Ying Jiang, Mingfeng Zhou, Chuan Huang, Chunhui Huang, Xia Wu, Tingting Zhang, Xingmei Zhang, Shanhe Wan, Jiajie Zhang
Software Mentions: 1
Published: over 5 years ago

10.1093/jxb/eru053

Positive selection of Kranz and non-Kranz C4 phosphoenolpyruvate carboxylase amino acids in Suaedoideae (Chenopodiaceae)
Cited by: 23
Author(s): Josh Rosnow, Gerald E. Edwards, Eric H. Roalson
Software Mentions: 1
Published: over 12 years ago

10.1093/jxb/eru383

Computational and genetic evidence that different structural conformations of a non-catalytic region affect the function of plant cellulose synthase
Cited by: 16
Author(s): Erin Slabaugh, Latsavongsakda Sethaphong, Chaowen Xiao, Joshua Amick, Charles T. Anderson, Candace H. Haigler, Yaroslava G. Yingling
Software Mentions: 1
Published: almost 12 years ago

10.1093/jxb/erv268

Maize EMBRYO SAC family peptides interact differentially with pollen tubes and fungal cells
Cited by: 16
Author(s): Mayada Woriedh, Rainer Merkl, Thomas Dresselhaus
Software Mentions: 1
Published: about 11 years ago

10.1093/jxb/erv491

Two key polymorphisms in a newly discovered allele of the<i>Vitis vinifera TPS24</i>gene are responsible for the production of the rotundone precursor α-guaiene
Cited by: 37
Author(s): Damian Paul Drew, Trine Bundgaard Andersen, Crystal Sweetman, Birger Lindberg Møller, Christopher M. Ford, Henrik Toft Simonsen
Software Mentions: 1
Published: over 10 years ago

10.1093/jxb/erx030

Phosphorylation of the phytosulfokine peptide receptor PSKR1 controls receptor activity
Cited by: 14
Author(s): Christine Kaufmann, Michael Motzkus, Margret Sauter
Software Mentions: 1
Published: over 9 years ago

10.1093/jxb/erx113

The 2-oxoglutarate-dependent dioxygenase superfamily participates in tanshinone production in Salvia miltiorrhiza
Cited by: 38
Author(s): Zhichao Xu, Jingyuan Song
Software Mentions: 1
Published: over 9 years ago

10.1093/jxb/erx070

Crystal structures of β-carboxysome shell protein CcmP: ligand binding correlates with the closed or open central pore
Cited by: 37
Author(s): Anna-Maria Larsson, Dirk Hasse, K. Valegård, Ingemar Andersson
Software Mentions: 1
Published: over 9 years ago

10.1093/jxb/erx115

β-Carboxysome bioinformatics: identification and evolution of new bacterial microcompartment protein gene classes and core locus constraints
Cited by: 33
Author(s): Maik S. Sommer, Fei Cai, Matthew R. Melnicki, Cheryl A. Kerfeld
Software Mentions: 1
Published: over 9 years ago

10.1093/jxb/ery036

The elusive ligand complexes of the DWARF14 strigolactone receptor
Cited by: 34
Author(s): Gunilla Carlsson, Dirk Hasse, Francesca Cardinale, Cristina Prandi, Ingemar Andersson
Software Mentions: 1
Published: over 8 years ago

10.1093/jxb/ery099

MADS transcription factors cooperate: complexities of complex formation
Cited by: 13
Author(s): Véronique Hugouvieux, Chloé Zubieta
Software Mentions: 1
Published: over 8 years ago

10.1093/jxb/ery351

<i>Verticillium dahliae</i>PevD1, an Alt a 1-like protein, targets cotton PR5-like protein and promotes fungal infection
Cited by: 44
Author(s): Yi Zhang, Yin Gao, Yingbo Liang, Yuchen Dong, Xiufen Yang, Dewen Qiu
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.kint.2020.01.045

Long-term outcomes and response to treatment in diacylglycerol kinase epsilon nephropathy
Cited by: 29
Author(s): Vicky Brocklebank, Gurinder Kumar, Alexander J. Howie, Jayanthi Chandar, David V. Milford, Janet Craze, Jonathan Evans, Eric Finlay, Michael Freundlich, Daniel P. Gale, Carol Inward, Martin Mraz, Caroline Jones, William Wong, Stephen D. Marks, John Connolly, Bronte M. Corner, Kate Smith-Jackson, Patrick R. Walsh, Kevin J. Marchbank, Claire L. Harris, Valerie Wilson, Edwin K.S. Wong, Michal Malina, Sally Johnson, Neil Sheerin, David Kavanagh
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.ppat.0030069

Structure of GrlR and the Implication of Its EDED Motif in Mediating the Regulation of Type III Secretion System in EHEC
Cited by: 31
Author(s): Chacko Jobichen, Mo Li, Gal Yerushalmi, Yih Wan Tan, Yu Keung Mok, Ilan Rosenshine, Ka Yin Leung, J. Sivaraman
Software Mentions: 1
Published: about 19 years ago

10.1371/journal.ppat.0040005

Structure and Function of A41, a Vaccinia Virus Chemokine Binding Protein
Cited by: 65
Author(s): Mohammad W. Bahar, Julia C. Kenyon, Mike M. Pütz, Nicola G. A. Abrescia, James E. Pease, Emma L. Wise, David I. Stuart, Geoffrey L. Smith, Jonathan M. Grimes
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.ppat.1000046

The Lentiviral Integrase Binding Protein LEDGF/p75 and HIV-1 Replication
Cited by: 211
Author(s): Alan Engelman, Peter Cherepanov
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.ppat.0030138

Structure of the Malaria Antigen AMA1 in Complex with a Growth-Inhibitory Antibody
Cited by: 58
Author(s): Andrew M. Coley, Aditi Gupta, Vincent J. Murphy, Tao Bai, Hanna Kim, Robin F. Anders, Michael Foley, Adrian H. Batchelor
Software Mentions: 1
Published: almost 19 years ago

10.1371/journal.ppat.1000235

Structure of Reovirus σ1 in Complex with Its Receptor Junctional Adhesion Molecule-A
Cited by: 102
Author(s): Eva Kirchner, Kristen M. Guglielmi, Holger M. Strauss, Terence S. Dermody, Thilo Stehle
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.ppat.1000273

An Inhibitory Antibody Blocks Interactions between Components of the Malarial Invasion Machinery
Cited by: 151
Author(s): Christine R. Collins, Chrislaine Withers‐Martinez, Fiona Hackett, Michael J. Blackman
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.ppat.1000221

New Disturbing Trend in Antimicrobial Resistance of Gram-Negative Pathogens
Cited by: 26
Author(s): Jung Hun Lee, Seok Hoon Jeong, Sun Shin, Sangeun Lee
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.ppat.1000351

An Amphipathic α-Helix Controls Multiple Roles of Brome Mosaic Virus Protein 1a in RNA Replication Complex Assembly and Function
Cited by: 83
Author(s): Ling Liu, William M. Westler, Johan A. den Boon, Xiaofeng Wang, Arturo Diaz, H. Adam Steinberg, Paul Ahlquist
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.ppat.1000363

Seroepidemiology of Human Polyomaviruses
Cited by: 632
Author(s): Jaime M. Kean, Suchitra Rao, Michael Wang, Robert L. Garcea
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.ppat.1000428

The SARS-Unique Domain (SUD) of SARS Coronavirus Contains Two Macrodomains That Bind G-Quadruplexes
Cited by: 157
Author(s): Jingjing Tan, Clemens Vonrhein, Oliver S. Smart, G. Bricogne, Michela Bollati, Yuri Kusov, Guido Hansen, J.R. Mesters, Christian Schmidt, Rolf Hilgenfeld
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.ppat.1000460

Mycobacterium tuberculosis Universal Stress Protein Rv2623 Regulates Bacillary Growth by ATP-Binding: Requirement for Establishing Chronic Persistent Infection
Cited by: 100
Author(s): Joshua E. Drumm, Kaixia Mi, P.W. Bilder, Meihao Sun, Lim J, Helle Bielefeldt‐Ohmann, Randall J. Basaraba, M. So, Guofeng Zhu, Jo Ann M. Tufariello, Angelo A. Izzo, Ian M. Orme, S.C. Almo, Thomas S. Leyh, John Chan
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.ppat.1000515

Structural Basis for Functional Tetramerization of Lentiviral Integrase
Cited by: 113
Author(s): S. Hare, Francesca Di Nunzio, Alfred Labeja, Jimin Wang, Alan Engelman, Peter Cherepanov
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.ppat.1000579

The Chlamydia Type III Secretion System C-ring Engages a Chaperone-Effector Protein Complex
Cited by: 87
Author(s): Kris Spaeth, Yi-Shan Chen, Raphael H. Valdivia
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.ppat.1000717

Caenorhabditis elegans N-glycan Core β-galactoside Confers Sensitivity towards Nematotoxic Fungal Galectin CGL2
Cited by: 91
Author(s): Alex Butschi, Alexander Titz, Marielle A. Wälti, V. Oliéric, Katharina Paschinger, Katharina Nöbauer, Xiaoqiang Guo, Peter H. Seeberger, Iain B. H. Wilson, Markus Aebi, Michael O. Hengartner, Markus Künzler
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.ppat.1001157

In Vitro and In Vivo Studies Identify Important Features of Dengue Virus pr-E Protein Interactions
Cited by: 73
Author(s): Aihua Zheng, Mahadevaiah Umashankar, Margaret Kielian
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.ppat.1001195

Crystal Structure and Size-Dependent Neutralization Properties of HK20, a Human Monoclonal Antibody Binding to the Highly Conserved Heptad Repeat 1 of gp41
Cited by: 82
Author(s): C. Sabin, Davide Corti, Víctor Buzón, Mike Seaman, D. Lutje Hulsik, Andreas Hinz, Fabrizia Vanzetta, Gloria Agatic, Chiara Silacci, Lara Mainetti, Gabriella Scarlatti, Federica Sallusto, Robin A. Weiss, Antonio Lanzavecchia, Winfríed Weissenhorn
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.ppat.1001335

HYR1-Mediated Detoxification of Reactive Oxygen Species Is Required for Full Virulence in the Rice Blast Fungus
Cited by: 109
Author(s): Kun Huang, Kirk J. Czymmek, Jeffrey Caplan, James A. Sweigard, Nicole Donofrio
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.ppat.1002030

The Hexamer Structure of the Rift Valley Fever Virus Nucleoprotein Suggests a Mechanism for its Assembly into Ribonucleoprotein Complexes
Cited by: 94
Author(s): François Ferrón, Zongli Li, Eric I. Danek, Dahai Luo, Yee Hwa Wong, Bruno Coutard, Violaine Lantez, Rémi N. Charrel, Bruno Canard, Thomas Walz, Julien Lescar
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.ppat.1002103

The Binding of Triclosan to SmeT, the Repressor of the Multidrug Efflux Pump SmeDEF, Induces Antibiotic Resistance in Stenotrophomonas maltophilia
Cited by: 96
Author(s): Alvaro G. Hernandez, Federico M. Ruiz, Antonio Romero, José Luis Martínez
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.ppat.1002132

Dynamic Evolution of Pathogenicity Revealed by Sequencing and Comparative Genomics of 19 Pseudomonas syringae Isolates
Cited by: 380
Author(s): David A. Baltrus, Marc T. Nishimura, Artur Romanchuk, Jeff H. Chang, M. Shahid Mukhtar, Karen Cherkis, Jeff Roach, Sarah Grant, Corbin D. Jones, Jeffery L. Dangl
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.ppat.1002152

Crystallography of a Lewis-Binding Norovirus, Elucidation of Strain-Specificity to the Polymorphic Human Histo-Blood Group Antigens
Cited by: 96
Author(s): Yutao Chen, Ming Tan, Ming Xia, Nanjing Hao, Xuejun C. Zhang, Pengwei Huang, Xi Jiang, Xuemei Li, Zihe Rao
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.ppat.1002163

Crystal Structure of PrgI-SipD: Insight into a Secretion Competent State of the Type Three Secretion System Needle Tip and its Interaction with Host Ligands
Cited by: 52
Author(s): Michele Lunelli, Robert Hurwitz, Jutta Lambers, Michael Kolbe
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.ppat.1002239

Membrane Remodeling by the Double-Barrel Scaffolding Protein of Poxvirus
Cited by: 42
Author(s): Jaekyung Hyun, Cathy Accurso, Marcel Hijnen, Philipp Schult, Anne Pettikiriarachchi, Alok K. Mitra, F. Coulibaly
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.ppat.1002248

Structure of the Vesicular Stomatitis Virus N0-P Complex
Cited by: 113
Author(s): C. Leyrat, Filip Yabukarski, Nicolas Tarbouriech, Euripedes de Almeida Ribeiro, Malene Ringkjøbing Jensen, Martin Blackledge, Rob W.H. Ruigrok, Marc Jamin
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.ppat.1002388

A Kinase Chaperones Hepatitis B Virus Capsid Assembly and Captures Capsid Dynamics in vitro
Cited by: 60
Author(s): Chao Chen, Joseph Che Yen Wang, Adam Zlotnick
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.ppat.1002553

A P-loop Mutation in Gα Subunits Prevents Transition to the Active State: Implications for G-protein Signaling in Fungal Pathogenesis
Cited by: 30
Author(s): Dustin E. Bosch, Francis S. Willard, Ravikrishna Ramanujam, Adam J. Kimple, Melinda D. Willard, Naweed I. Naqvi, David P. Siderovski
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.ppat.1002603

Multiple Peptidoglycan Modification Networks Modulate Helicobacter pylori's Cell Shape, Motility, and Colonization Potential
Cited by: 119
Author(s): Laura K. Sycuro, Timna J.O. Wyckoff, Jacob Biboy, Petra Born, Zachary Pincus, Waldemar Vollmer, Nina R. Salama
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.ppat.1002642

2′-O Methylation of Internal Adenosine by Flavivirus NS5 Methyltransferase
Cited by: 121
Author(s): Hansong Dong, David C. Chang, Maggie Ho Chia Hua, Siew Pheng Lim, Yok Hian Chionh, Fabian Hia, Yie Hou Lee, Petra Kukkaro, Shee-Mei Lok, Peter C. Dedon, Pei–Yong Shi
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.ppat.1002613

Structural Basis for Type VI Secretion Effector Recognition by a Cognate Immunity Protein
Cited by: 57
Author(s): Mo Li, I. Le Trong, Mike A. Carl, E.T. Larson, Seemay Chou, Justin A. De Leon, Simon L. Dove, Ronald E. Stenkamp, Joseph D. Mougous
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.ppat.1002734

Structure and Functional Analysis of the RNA- and Viral Phosphoprotein-Binding Domain of Respiratory Syncytial Virus M2-1 Protein
Cited by: 68
Author(s): Marie-Lise Blondot, Virginie Dubosclard, Jenna Fix, Safa Lassoued, Magali Aumont-Niçaise, François Bontems, Jean François Eléouët, Christina Sizun
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.ppat.1002826

Identification of Site-Specific Adaptations Conferring Increased Neural Cell Tropism during Human Enterovirus 71 Infection
Cited by: 85
Author(s): Samuel Cordey, Tom J. Petty, Manuel Schibler, Yannick Martinez, Daniel Gerlach, Sandra Van Belle, Lara Turin, Evgeny M. Zdobnov, Laurent Kaiser, Caroline Tapparel
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.ppat.1002896

CPSF6 Defines a Conserved Capsid Interface that Modulates HIV-1 Replication
Cited by: 217
Author(s): Amanda J. Price, Adam J. Fletcher, Torsten Schaller, Tom Elliott, Kyeongeun Lee, Vineet N. KewalRamani, Jason W. Chin, Greg J. Towers, Leo C. James
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.ppat.1002978

Deciphering the Acylation Pattern of Yersinia enterocolitica Lipid A
Cited by: 30
Author(s): Mar Reinés, Enrique Llobet, Käthe M. Dahlström, Camino Pérez-Gutiérrez, Catalina M. Llompart, Nuria Torrecabota, Tiina A. Salminen, José A. Bengoechea
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.ppat.1002993

Mapping the Phosphoproteome of Influenza A and B Viruses by Mass Spectrometry
Cited by: 124
Author(s): Edward Hutchinson, Eleanor M Denham, Benjamin Thomas, David C. Trudgian, Svenja Hester, Gabriela Ridlova, Ashley York, Lauren Turrell, Ervin Fodor
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.ppat.1003012

The Capping Domain in RalF Regulates Effector Functions
Cited by: 34
Author(s): Eric Alix, Laurent Chesnel, B. Bowzard, Aimee M. Tucker, Anna Delprato, Jacqueline Cherfils, Douglas Wood, Richard Kahn, Craig R. Roy
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.ppat.1003031

Semaphorin-7A Is an Erythrocyte Receptor for P. falciparum Merozoite-Specific TRAP Homolog, MTRAP
Cited by: 65
Author(s): Josefin S Bartholdson, Leyla Y. Bustamante, Cécile Crosnier, Steven Johnson, Susan M. Lea, Julian C. Rayner, Gavin J. Wright
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.ppat.1003279

Pandemic Influenza A Viruses Escape from Restriction by Human MxA through Adaptive Mutations in the Nucleoprotein
Cited by: 150
Author(s): Benjamin Mänz, Dominik Dornfeld, Veronika Götz, Roland Zell, Petra Zimmermann, Otto Haller, Georg Kochs, Martin Schwemmle
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.ppat.1003322

Complex Structure of OspI and Ubc13: The Molecular Basis of Ubc13 Deamidation and Convergence of Bacterial and Host E2 Recognition
Cited by: 26
Author(s): Panhan Fu, Xiaoqing Zhang, Mengmeng Jin, Li Xu, Chong Wang, Zongping Xia, Yongqun Zhu
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.ppat.1003382

Structural Basis for Rab1 De-AMPylation by the Legionella pneumophila Effector SidD
Cited by: 27
Author(s): Yang Chen, Igor Tascón, M. Ramona Neunuebel, Chiara Pallara, Jacqueline M. Brady, Lisa N. Kinch, Juan Fernández‐Recio, Adriana L. Rojas, Matthias P. Machner, Aitor Hierro
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.ppat.1003508

Structural Basis for Native Agonist and Synthetic Inhibitor Recognition by the Pseudomonas aeruginosa Quorum Sensing Regulator PqsR (MvfR)
Cited by: 168
Author(s): Aravindan Ilangovan, Matthew P. Fletcher, Giordano Rampioni, Christian Pustelny, Kendra P. Rumbaugh, Stephan Heeb, Miguel Cámara, Alex Truman, Siri Ram Chhabra, Jonas Emsley, Paul Williams
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.ppat.1003521

Rational Design of a Live Attenuated Dengue Vaccine: 2′-O-Methyltransferase Mutants Are Highly Attenuated and Immunogenic in Mice and Macaques
Cited by: 99
Author(s): Roland Züst, Hansong Dong, Xiao Feng Li, David C. Chang, Bo Zhang, T. R. Balakrishnan, Ying Xiu Toh, Tao Jiang, Shengbo Eben Li, Yong Qiang Deng, Brett R. Ellis, Esther M. Ellis, Michael Poidinger, Francesca Zolezzi, Cheng‐Feng Qin, Pei Yong Shi, Katja Fink
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.ppat.1003534

Structure of the Parainfluenza Virus 5 (PIV5) Hemagglutinin-Neuraminidase (HN) Ectodomain
Cited by: 60
Author(s): Brett D. Welch, Ping Yuan, Sayantan Bose, Christopher A. Kors, Robert A. Lamb, Theodore S. Jardetzky
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.ppat.1003678

Inhibition of Pyrimidine Biosynthesis Pathway Suppresses Viral Growth through Innate Immunity
Cited by: 130
Author(s): Marianne Lucas‐Hourani, Daniel Dauzonne, Pierre Jorda, Gaëlle Cousin, Alexandru Lupan, Olivier Helynck, Grégory Caignard, Geneviève Janvier, Gwenaëlle André-Leroux, Samira Khiar, Nicolas Escriou, Philippe Desprès, Yves Jacob, Hélène Munier‐Lehmann, Frédéricic Tangy, Pierre‐Olivier Vidalain
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.ppat.1003770

Unraveling a Three-Step Spatiotemporal Mechanism of Triggering of Receptor-Induced Nipah Virus Fusion and Cell Entry
Cited by: 82
Author(s): Qian Liu, Jacquelyn A. Stone, Birgit Bradel-Tretheway, Jeffrey Dabundo, Javier A. Benavides Montano, Jennifer Santos-Montañez, Scott B. Biering, Anthony V. Nicola, Ronald M. Iorio, Xiaonan Lu, Hector C. Aguilar
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.ppat.1003945

The Post-transcriptional Regulator rsmA/csrA Activates T3SS by Stabilizing the 5′ UTR of hrpG, the Master Regulator of hrp/hrc Genes, in Xanthomonas
Cited by: 64
Author(s): Maxuel O. Andrade, Chuck S. Farah, Nian Wang
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.ppat.1004024

Different Mutagenic Potential of HIV-1 Restriction Factors APOBEC3G and APOBEC3F Is Determined by Distinct Single-Stranded DNA Scanning Mechanisms
Cited by: 61
Author(s): Anjuman Ara, Robin P. Love, Linda Chelico
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.ppat.1004064

A Quantitative High-Resolution Genetic Profile Rapidly Identifies Sequence Determinants of Hepatitis C Viral Fitness and Drug Sensitivity
Cited by: 65
Author(s): Hangfei Qi, C. Anders Olson, Nicholas C. Wu, Ruian Ke, Claude Loverdo, V. Chu, Shawna Truong, Roland Remenyi, Zugen Chen, Yushen Du, Sheng Su, Laith Q. Al‐Mawsawi, Ting Wu, Shu Hua Chen, Chung Yen Lin, Weidong Zhong, James O. Lloyd‐Smith, Ren Sun
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.ppat.1004091

Structural Differences Explain Diverse Functions of Plasmodium Actins
Cited by: 60
Author(s): Juha Vahokoski, Saligram Prabhakar Bhargav, Ambroise Desfosses, Maria Andreadaki, Esa-Pekka Kumpula, S. Munico Martinez, Alexander Ignatev, Simone Lepper, Friedrich Frischknecht, Inga Sidén‐Kiamos, Carsten Sachse, Inari Kursula
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.ppat.1004107

Co-assembly of Viral Envelope Glycoproteins Regulates Their Polarized Sorting in Neurons
Cited by: 20
Author(s): Rafael Mattera, Ginny G. Farı́as, Gonzalo A. Mardones, Juan S. Bonifacino
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.ppat.1004174

Selective Chemical Inhibition of agr Quorum Sensing in Staphylococcus aureus Promotes Host Defense with Minimal Impact on Resistance
Cited by: 267
Author(s): Erin K. Sully, Natalia Małachowa, Bradley O. Elmore, Susan Alexander, Jon Femling, Brian M. Gray, Frank R. DeLeo, Michael Otto, Ambrose L. Cheung, Bruce S. Edwards, Larry A. Sklar, Alexander R. Horswill, Pamela R. Hall, Hattie D. Gresham
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.ppat.1004204

Biogenesis of Influenza A Virus Hemagglutinin Cross-Protective Stem Epitopes
Cited by: 8
Author(s): Javier G. Magadán, Meghan O. Altman, William L. Ince, Heather D. Hickman, James Stevens, Aaron Chevalier, David Baker, Patrick C. Wilson, Rafi Ahmed, Jack R. Bennink, Jonathan W. Yewdell
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.ppat.1004338

Plasmodium falciparum Infection Induces Expression of a Mosquito Salivary Protein (Agaphelin) That Targets Neutrophil Function and Inhibits Thrombosis without Impairing Hemostasis
Cited by: 28
Author(s): Michael Waisberg, Alvaro Molina-Cruz, Daniella M. Mizurini, Nidhi Gera, Beatriz Coutinho de Sousa, Dongying Ma, Ana Carolina Leal, Tainá Gomes, Michail Kotsyfakis, José M. C. Ribeiro, Jan Lukszo, Karine Reiter, Stephen F. Porcella, Carlo José Freire Oliveira, Robson Q. Monteiro, Carolina Barillas‐Mury, Susan K. Pierce, Ivo M.B. Francischetti
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.ppat.1004362

EhCoactosin Stabilizes Actin Filaments in the Protist Parasite Entamoeba histolytica
Cited by: 23
Author(s): Narendra Kumar, Somlata, Mohit Mazumder, Priyanka Dutta, Sankar Maiti, S. Gourinath
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.ppat.1004453

APOBEC3D and APOBEC3F Potently Promote HIV-1 Diversification and Evolution in Humanized Mouse Model
Cited by: 79
Author(s): Kei Sato, Junko Takeuchi, Naoko Misawa, Tatsuro Izumi, Tomoko Kobayashi, Yuichi Kimura, Shingo Iwami, Akifumi Takaori‐Kondo, Wei Hu, Kazuyuki Aihara, Mamoru Ito, Dong Sung An, Vinay K. Pathak, Yoshio Koyanagi
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.ppat.1004459

Host Cofactors and Pharmacologic Ligands Share an Essential Interface in HIV-1 Capsid That Is Lost upon Disassembly
Cited by: 225
Author(s): Amanda J. Price, D.A. Jacques, William A. McEwan, Adam J. Fletcher, Sebastian Essig, Jason W. Chin, Upul D. Halambage, Christopher Aiken, Leo C. James
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.ppat.1004475

Host-Specific Parvovirus Evolution in Nature Is Recapitulated by In Vitro Adaptation to Different Carnivore Species
Cited by: 101
Author(s): Andrew B. Allison, D Köhler, Alicia N. Ortega, Elizabeth A. Hoover, Daniel M. Grove, Edward C. Holmes, Colin R. Parrish
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.ppat.1004657

Human Adenovirus 52 Uses Sialic Acid-containing Glycoproteins and the Coxsackie and Adenovirus Receptor for Binding to Target Cells
Cited by: 60
Author(s): Annasara Lenman, A. Manuel Liaci, Yan Liu, Carin Årdahl, A. Rajan, Emma Nilsson, Will Bradford, Lisa Kaeshammer, Mary Smith McCrory Jones, Lars Frångsmyr, Ten Feizi, Thilo Stehle, Niklas Arnberg
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.ppat.1004674

Molecular and Functional Analyses of a Maize Autoactive NB-LRR Protein Identify Precise Structural Requirements for Activity
Cited by: 107
Author(s): Guan Feng Wang, Jiabing Ji, Farid EI-Kasmi, Jeffery L. Dangl, Gurmukh S. Johal, Peter Balint‐Kurti
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.ppat.1004639

Crystal Structures of the Carboxyl cGMP Binding Domain of the Plasmodium falciparum cGMP-dependent Protein Kinase Reveal a Novel Capping Triad Crucial for Merozoite Egress
Cited by: 24
Author(s): Jeong Joo Kim, Christian Flueck, Eugen Franz, Eduardo Sanabria-Figueroa, Eloise Thompson, Robin Lorenz, Daniela Bertinetti, David A. Baker, Friedrich W. Herberg, Choel Kim
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.ppat.1004857

Inhibition and Reversal of Microbial Attachment by an Antibody with Parasteric Activity against the FimH Adhesin of Uropathogenic E. coli
Cited by: 42
Author(s): Dagmara I. Kisiela, Hovhannes Avagyan, Della Friend, Jalan Aachal, Sudeep Gupta, Gianluca Interlandi, Yan Liu, Veronika Tchesnokova, Victoria B. Rodriguez, John P. Sumida, Roland K. Strong, Xue-Ru Wu, Wendy E. Thomas, Evgeni V. Sokurenko
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.ppat.1004669

Essential Domains of Anaplasma phagocytophilum Invasins Utilized to Infect Mammalian Host Cells
Cited by: 32
Author(s): David Seidman, Kathryn S. Hebert, Hilary K. Truchan, Daniel P. Miller, Brittney K. Tegels, Richard T. Marconi, Jason A. Carlyon
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.ppat.1005045

Dimerization-Induced Allosteric Changes of the Oxyanion-Hole Loop Activate the Pseudorabies Virus Assemblin pUL26N, a Herpesvirus Serine Protease
Cited by: 14
Author(s): Martin Zühlsdorf, Sebastiaan Werten, Barbara G. Klupp, Gottfried J. Palm, Thomas C. Mettenleiter, W. Hinrichs
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.ppat.1005067

Human Enterovirus Nonstructural Protein 2CATPase Functions as Both an RNA Helicase and ATP-Independent RNA Chaperone
Cited by: 68
Author(s): Hongjie Xia, Peipei Wang, Guang Chuan Wang, Jie Yang, Sun Xianlin, Wenzhe Wu, Yang Qiu, Ting Shu, Xiaolu Zhao, Lei Yin, Cheng‐Feng Qin, Yuanyang Hu, Xi Zhou
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.ppat.1005071

A Pyranose-2-Phosphate Motif Is Responsible for Both Antibiotic Import and Quorum-Sensing Regulation in Agrobacterium tumefaciens
Cited by: 28
Author(s): Abbas El Sahili, Si Zhe Li, Julien Lang, Cornelia Virus, Sara Planamente, Mohammed Ahmar, B.G. Guimarães, Magali Aumont-Niçaise, Armelle Vigouroux, Laurent Soulère, John S. Reader, Yves Queneau, Denis Faure, S. Morera
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.ppat.1005112

Trichodysplasia spinulosa-Associated Polyomavirus Uses a Displaced Binding Site on VP1 to Engage Sialylated Glycolipids
Cited by: 19
Author(s): L.J. Stroh, Gretchen V. Gee, Bärbel S. Blaum, Aisling S. Dugan, Mariet C.W. Feltkamp, Walter J. Atwood, Thilo Stehle
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.ppat.1005228

Structure Analysis Uncovers a Highly Diverse but Structurally Conserved Effector Family in Phytopathogenic Fungi
Cited by: 169
Author(s): Karine de Guillen, Diana Ortiz, Jérôme Gracy, Elisabeth Fournier, Thomas Kroj, André Padilla
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.ppat.1005401

Differential Toxicity of Antibodies to the Prion Protein
Cited by: 53
Author(s): Regina Reimann, Tiziana Sonati, Simone Hornemann, U. Herrmann, Michael Arand, Simon Hawke, Adriano Aguzzi
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.ppat.1005641

Receptor-Targeted Nipah Virus Glycoproteins Improve Cell-Type Selective Gene Delivery and Reveal a Preference for Membrane-Proximal Cell Attachment
Cited by: 56
Author(s): R. Bender, Anke Muth, Irene C. Schneider, Thorsten Friedel, Jessica Hartmann, Andreas Plückthun, Andrea Maisner, Christian J. Buchholz
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.ppat.1005826

The Invertebrate Lysozyme Effector ILYS-3 Is Systemically Activated in Response to Danger Signals and Confers Antimicrobial Protection in C. elegans
Cited by: 29
Author(s): Maria J. Gravato-Nobre, Filipa Vaz, Sérgio R. Filipe, Ronald Chalmers, Jonathan Hodgkin
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.ppat.1005886

The C-terminal 18 Amino Acid Region of Dengue Virus NS5 Regulates its Subcellular Localization and Contains a Conserved Arginine Residue Essential for Infectious Virus Production
Cited by: 65
Author(s): Moon Y. F. Tay, Kate Smith, Ivan Hong Wee Ng, Kitti Wing Ki Chan, Yongxiang Zhao, Eng Eong Ooi, Julien Lescar, Dahai Luo, David A. Jans, Jade K. Forwood, Subhash G. Vasudevan
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.ppat.1005896

Costimulatory Effects of an Immunodominant Parasite Antigen Paradoxically Prevent Induction of Optimal CD8 T Cell Protective Immunity
Cited by: 7
Author(s): Christopher S. Eickhoff, Xiuli Zhang, José Ronnie Vasconcelos, Reinhard Motz, Nicole Sullivan, Kelly O’Shea, Nicola Pozzi, David W. Gohara, Jennifer R. Blase, Enrico Di, Daniel F. Hoft
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.ppat.1006079

Vaccinia Virus Immunomodulator A46: A Lipid and Protein-Binding Scaffold for Sequestering Host TIR-Domain Proteins
Cited by: 19
Author(s): Sofiya Fedosyuk, G.A. Bezerra, Katharina Radakovics, Terry Smith, Massimo Sammito, Nina Bobik, Adam Round, Lynn F. Ten Eyck, Kristina Djinović-Carugo, Isabel Usón, Tim Skern
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.ppat.1006134

A positive-strand RNA virus uses alternative protein-protein interactions within a viral protease/cofactor complex to switch between RNA replication and virion morphogenesis
Cited by: 21
Author(s): Danilo Dubrau, M. Alejandra Tortorici, F.A. Rey, Norbert Tautz
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.ppat.1006372

Potent and selective inhibition of pathogenic viruses by engineered ubiquitin variants
Cited by: 46
Author(s): Wei Zhang, Ben A. Bailey-Elkin, Robert C. M. Knaap, Baldeep Khare, Tim J. Dalebout, Garrett G R J Johnson, Puck B. van Kasteren, Nigel J. McLeish, Jun Gu, Wenguang He, Marjolein Kikkert, Brian L. Mark, Sachdev S. Sidhu
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.ppat.1006533

Structural basis of Zn(II) induced metal detoxification and antibiotic resistance by histidine kinase CzcS in Pseudomonas aeruginosa
Cited by: 20
Author(s): Dan Wang, Weizhong Chen, Shanqing Huang, Yafeng He, Xichun Liu, Qingyuan Hu, T. Wei, Hong Sang, Jianhua Gan, Hao Chen
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.ppat.1006512

From bacterial killing to immune modulation: Recent insights into the functions of lysozyme
Cited by: 457
Author(s): Stephanie A. Ragland, Alison K. Criss
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.ppat.1006705

Membrane alterations induced by nonstructural proteins of human norovirus
Cited by: 61
Author(s): Sylvie Y. Doerflinger, Mirko Cortese, Inés Romero-Brey, Zach Menne, Thibault Tubiana, Christian Schenk, Peter A. White, Ralf Bartenschlager, Stéphane Bressanelli, Grant S. Hansman, Volker Lohmann
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1006729

Subtle variation within conserved effector operon gene products contributes to T6SS-mediated killing and immunity
Cited by: 22
Author(s): Christopher J. Alteri, Stephanie D. Himpsl, Kevin Y. Zhu, Haley L. Hershey, Ninette Musili, Jessa E. Miller, Harry L. T. Mobley
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1006897

RavN is a member of a previously unrecognized group of Legionella pneumophila E3 ubiquitin ligases
Cited by: 27
Author(s): Yi‐Han Lin, María Lucas, Timothy R. Evans, Guillermo Abascal-Palacios, Alexandra G. Doms, Nicole A. Beauchene, Adriana L. Rojas, Aitor Hierro, Matthias P. Machner
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1006850

Host-parasite co-metabolic activation of antitrypanosomal aminomethyl-benzoxaboroles
Cited by: 24
Author(s): Ning Zhang, Martin Zoltner, Ka-Fai Leung, Paul Scullion, Sebastian Hutchinson, Ricardo Canavate del Pino, Isabel M. Vincent, Yongkang Zhang, Yvonne R. Freund, M.R.K. Alley, Robert T. Jacobs, Kevin D. Read, Michael P. Barrett, David Horn
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1007118

Crosstalk between the serine/threonine kinase StkP and the response regulator ComE controls the stress response and intracellular survival of Streptococcus pneumoniae
Cited by: 24
Author(s): Germán E. Piñas, Nicolás M. Reinoso-Vizcaíno, Nubia Y. Yandar Barahona, Paulo R. Cortes, Rosario Durán, Chandan Badapanda, Ankita Rathore, Darío Román Bichara, Melina B. Cian, Nadia B. Olivero, Daniel R. Pérez, Josè Echenique
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.ppat.1007278

Select gp120 V2 domain specific antibodies derived from HIV and SIV infection and vaccination inhibit gp120 binding to α4β7
Cited by: 26
Author(s): Sakaorat Lertjuthaporn, Claudia Cicala, Donald Van Ryk, Matthew Liu, Jason Yolitz, Darmood Wei, Fatima Nawaz, Andrew D. Doyle, Brooke Horowitch, Chung Park, Shan Lu, Yang Lou, Shixia Wang, Ruimin Pan, Xunqing Jiang, François Villinger, Siddappa N. Byrareddy, Philip J. Santangelo, Lynn Morris, Constantinos Kurt Wibmer, Kristin K. Biris, Rosemarie D. Mason, Jason Gorman, Joseph Hiatt, Elena Martinelli, Mario Roederer, Dai Fujikawa, Giacomo Gorini, Genoveffa Franchini, Anush Arakelyan, Aftab A. Ansari, Kovit Pattanapanyasat, Xiang‐Peng Kong, Anthony S. Fauci, James Arthos
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.ppat.1007377

Transcription apparatus of the yeast virus-like elements: Architecture, function, and evolutionary origin
Cited by: 10
Author(s): Michal Sýkora, Martin Pospíšek, Josef F. Novak, Silvia Mrvová, Libor Krásný, Václav Vopálenský
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.ppat.1007379

Unveiling the structural features that determine the dual methyltransferase activities of Streptococcus pneumoniae RlmCD
Cited by: 0
Author(s): Yiyang Jiang, Hailong Yu, Fudong Li, Lin Cheng, Lingru Zhu, Yunyu Shi, Qingguo Gong
Software Mentions: 1
Published: over 7 years ago