Projects: pypi: PyMOL

https://packages.ecosyste.ms/registries/pypi.org/packages/PyMOL


1 version
Latest release: almost 3 years ago
5 dependent packages

Science Score: 90/100
Starting Score: 100 points
Bonuses:
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem

Very Likely Science (90)

Papers Mentioning PyMOL 8,266

10.1107/S2053230X2001208X
Structure of the substrate-binding domain of <i>Plasmodium falciparum</i> heat-shock protein 70-x
Cited by: 8
Author(s): Julia Schmidt, Ioannis Vakonakis
Software Mentions: 1
Published: almost 6 years ago
10.1107/S2053230X18015662
Structural studies of a glycoside hydrolase family 3 β-glucosidase from the model fungus<i>Neurospora crassa</i>
Cited by: 6
Author(s): Saeid Karkehabadi, Henrik Hansson, N.E. Mikkelsen, Steve Kim, Thijs Kaper, Mats Sandgren, Mikael Gudmundsson
Software Mentions: 1
Published: over 7 years ago
10.1107/S2053230X16016149
Natural and non-natural amino-acid side-chain substitutions: affinity and diffraction studies of meditope–Fab complexes
Cited by: 7
Author(s): K.P. Bzymek, Kendra A. Avery, Yuelong Ma, David Horne, John C. Williams
Software Mentions: 1
Published: over 9 years ago
10.1107/S2053230X14004695
Structure of human nucleosome containing the testis-specific histone variant TSH2B
Cited by: 18
Author(s): Takashi Urahama, Naoki Horikoshi, Akihisa Osakabe, Hiroaki Tachiwana, Hitoshi Kurumizaka
Software Mentions: 1
Published: over 12 years ago
10.1107/S2053230X15013102
The structure of Tim50(164–361) suggests the mechanism by which Tim50 receives mitochondrial presequences
Cited by: 9
Author(s): Jingzhi Li, Bingdong Sha
Software Mentions: 1
Published: almost 11 years ago
10.1107/S2053230X15016076
Structure of a catalytic dimer of the α- and β-subunits of the F-ATPase from<i>Paracoccus denitrificans</i>at 2.3 Å resolution
Cited by: 8
Author(s): Edgar Morales-Ríos, M.G. Montgomery, Andrew G. W. Leslie, José J. García-Trejo, John E. Walker
Software Mentions: 1
Published: almost 11 years ago
10.1107/S2053230X16007597
High-resolution NMR structures of the domains ofSaccharomyces cerevisiaeTho1
Cited by: 0
Author(s): Julian O. B. Jacobsen, Mark D. Allen, Stefan Freund, Mark Bycroft
Software Mentions: 1
Published: about 10 years ago
10.1107/S2053230X21006853
Crystal structure of the TLDc domain of human NCOA7-AS
Cited by: 2
Author(s): Mary Arnaud-Arnould, Marine Tauziet, Olivier Moncorgé, Caroline Goujon, Mickaël Blaise
Software Mentions: 1
Published: almost 5 years ago
10.1107/S2053230X18011019
Structure of the GH9 glucosidase/glucosaminidase from<i>Vibrio cholerae</i>
Cited by: 3
Author(s): Liang Wu, G.J. Davies
Software Mentions: 1
Published: almost 8 years ago
10.1107/S2053230X18009834
Structure of the Fc fragment of the NIST reference antibody RM8671
Cited by: 10
Author(s): D.T. Gallagher, Connor Galvin, Ioannis Karageorgos
Software Mentions: 1
Published: almost 8 years ago
10.1107/S2053230X20006676
Structure of heme <i>d</i> <sub>1</sub>-free <i>cd</i> <sub>1</sub> nitrite reductase NirS
Cited by: 0
Author(s): Thomas Klünemann, Wulf Blankenfeldt
Software Mentions: 1
Published: about 6 years ago
10.1107/S2053230X20015216
The X-ray crystal structure of the N-terminal domain of Ssr4, a Schizosaccharomyces pombe chromatin-remodelling protein
Cited by: 2
Author(s): Janet Newman, Thomas Nebl, Hung Nguyen Van, Thomas S. Peat
Software Mentions: 1
Published: over 5 years ago
10.1107/S2053230X2001122X
A new soaking procedure for X-ray crystallographic structural determination of protein–peptide complexes
Cited by: 2
Author(s): Alice Ballone, Roxanne Lau, F.P.A. Zweipfenning, C. Ottmann
Software Mentions: 1
Published: almost 6 years ago
10.1107/S2053230X18006581
Spin ballet for sweet encounters: saturation-transfer difference NMR and X-ray crystallography complement each other in the elucidation of protein–glycan interactions
Cited by: 19
Author(s): Bärbel S. Blaum, Ursula Neu, Thomas Peters, Thilo Stehle
Software Mentions: 1
Published: almost 8 years ago
10.1107/S2053230X20001132
High-resolution crystal structures of <i>Escherichia coli</i> FtsZ bound to GDP and GTP
Cited by: 18
Author(s): Maria A. Schumacher, Tomoo Ohashi, Lauren C. Corbin, Harold P. Erickson
Software Mentions: 1
Published: over 6 years ago
10.1107/S2053230X21006658
The identification and structural analysis of potential 14-3-3 interaction sites on the bone regulator protein Schnurri-3
Cited by: 1
Author(s): Lorenzo Soini, S. Leysen, Thomas Crabbe, Jeremy Davis, C. Ottmann
Software Mentions: 1
Published: almost 5 years ago
10.1107/S2053230X21006002
Crystal structures of HER3 extracellular domain 4 in complex with the designed ankyrin-repeat protein D5
Cited by: 3
Author(s): Filip Radom, Clemens Vonrhein, Peer R. E. Mittl, Andreas Plückthun
Software Mentions: 1
Published: about 5 years ago
10.1107/S2053230X21003952
Crystallographic analysis and phasing of iron-assimilating protein 1 (FEA1) from Chlamydomonas reinhardtii
Cited by: 0
Author(s): Linda Juniar, Vida Adlfar, Michael Hippler, Hideaki Tanaka, Genji Kurisu
Software Mentions: 1
Published: about 5 years ago
10.1107/S2053230X15013709
Structure of the SPRY domain of the human RNA helicase DDX1, a putative interaction platform within a DEAD-box protein
Cited by: 12
Author(s): Julian N. Kellner, Anton Meinhart
Software Mentions: 1
Published: almost 11 years ago
10.1107/S2053230X15010614
Structures of<i>Pseudomonas aeruginosa</i>β-ketoacyl-(acyl-carrier-protein) synthase II (FabF) and a C164Q mutant provide templates for antibacterial drug discovery and identify a buried potassium ion and a ligand-binding site that is an artefact of the crystal form
Cited by: 4
Author(s): Bernhard Baum, Laura S. M. Lecker, Martin Zoltner, Elmar Jaenicke, R. Schnell, William N. Hunter, Ruth Brenk
Software Mentions: 1
Published: almost 11 years ago
10.1107/S2053230X19010902
Structure of GTP cyclohydrolase I from<i>Listeria monocytogenes</i>, a potential anti-infective drug target
Cited by: 4
Author(s): Sonja Schüssler, Ilka Haase, Markus Perbandt, Boris Illarionov, Alexandra Siemens, Klaus Richter, Adelbert Bacher, Markus Fischer, Tobias Gräwert
Software Mentions: 1
Published: almost 7 years ago
10.1107/S2053230X2100203X
Crystal structure of human CRM1, covalently modified by 2-mercaptoethanol on Cys528, in complex with RanGTP
Cited by: 1
Author(s): Alaa Shaikhqasem, Kerstin Schmitt, Oliver Valerius
Software Mentions: 1
Published: over 5 years ago
10.1107/S2053230X17017848
Structure of the mouse acidic amino acid decarboxylase GADL1
Cited by: 7
Author(s): Arne Raasakka, Elaheh Mahootchi, Ingeborg Winge, Weisha Luan, Petri Kursula, Jan Haavik
Software Mentions: 1
Published: over 8 years ago
10.1107/S2053230X17001601
Crystal structure of full-length<i>Zika virus</i>NS5 protein reveals a conformation similar to<i>Japanese encephalitis virus</i>NS5
Cited by: 76
Author(s): Anup K. Upadhyay, Matthew Cyr, K.L. Longenecker, Rakesh Tripathi, Chaohong Sun, Dale J. Kempf
Software Mentions: 1
Published: over 9 years ago
10.1107/S2053230X19011488
Structure of the dihydrolipoamide succinyltransferase catalytic domain from<i>Escherichia coli</i>in a novel crystal form: a tale of a common protein crystallization contaminant
Cited by: 6
Author(s): Babak Andi, Alexei S. Soares, Wuxian Shi, Martin R. Fuchs, Seán McSweeney, Qun Liu
Software Mentions: 1
Published: almost 7 years ago
10.1107/S2053230X16013686
Crystal and solution structural studies of mouse phospholipid hydroperoxide glutathione peroxidase 4
Cited by: 17
Author(s): Robert Janowski, Sandra Scanu, Dierk Niessing, Tobias Madl
Software Mentions: 1
Published: almost 10 years ago
10.1107/S2053230X17017381
Structure and stability of theHuman respiratory syncytial virusM2–1RNA-binding core domain reveals a compact and cooperative folding unit
Cited by: 4
Author(s): Ivana G. Molina, Inokentijs Josts, Yasser Almeida‐Hernández, Sebastián Esperante, Mariano Salgueiro, M.M. Garcia Alai, Gonzalo de Prat‐Gay, Henning Tidow
Software Mentions: 1
Published: over 8 years ago
10.1107/S2053230X14010930
A new crystal form of a hyperthermophilic endocellulase
Cited by: 5
Author(s): Mikio Kataoka, Kazuhiko Ishikawa
Software Mentions: 1
Published: about 12 years ago
10.1107/S2053230X17005957
Crystal structure of CD27 in complex with a neutralizing noncompeting antibody
Cited by: 9
Author(s): Alexey Teplyakov, Galina Obmolova, T. Malia, Gary L. Gilliland
Software Mentions: 1
Published: about 9 years ago
10.1107/S2053230X20001168
The thermodynamic profile and molecular interactions of a C(9)-cytisine derivative-binding acetylcholine-binding protein from Aplysia californica
Cited by: 1
Author(s): S. Davis, Hugo Rego Campello, Timothy Gallagher, William N. Hunter
Software Mentions: 1
Published: over 6 years ago
10.1107/S2053230X15012893
Crystallization and crystallographic studies of kallistatin
Cited by: 2
Author(s): Fanghua Lin, Aiwu Zhou, Zhenquan Wei
Software Mentions: 1
Published: almost 11 years ago
10.1107/S2053230X15010183
Structure of the human MLH1 N-terminus: implications for predisposition to Lynch syndrome
Cited by: 21
Author(s): Hong Wu, Hong Zeng, Robert Lam, W. Tempel, Iain Kerr, Jinrong Min
Software Mentions: 1
Published: almost 11 years ago
10.1107/S2053230X14009911
Structure of<i>Rhodococcus equi</i>virulence-associated protein B (VapB) reveals an eight-stranded antiparallel β-barrel consisting of two Greek-key motifs
Cited by: 15
Author(s): Christina Geerds, Jens Wohlmann, Albert Haas, Hartmut H. Niemann
Software Mentions: 1
Published: about 12 years ago
10.1107/S2053230X21008086
Site 2 of the Yersinia pestis substrate-binding protein YfeA is a dynamic surface metal-binding site
Cited by: 1
Author(s): C.D. Radka, Stephen G. Aller
Software Mentions: 1
Published: almost 5 years ago
10.1107/S2053230X14015088
Structural basis for the inhibition of poly(ADP-ribose) polymerases 1 and 2 by BMN 673, a potent inhibitor derived from dihydropyridophthalazinone
Cited by: 41
Author(s): Mika Aoyagi-Scharber, A.S. Gardberg, Bryan K. Yip, Bing Wang, Yuqiao Shen, Paul Fitzpatrick
Software Mentions: 1
Published: almost 12 years ago
10.1107/S2053230X2000922X
Expression, purification and crystal structure determination of a ferredoxin reductase from the actinobacterium<i>Thermobifida fusca</i>
Cited by: 1
Author(s): Jhon Alexander Rodriguez Buitrago, Thomas Klünemann, Wulf Blankenfeldt, Anett Schallmey
Software Mentions: 1
Published: almost 6 years ago
10.1107/S2053230X16013418
Crystal structure of yeast monothiol glutaredoxin Grx6 in complex with a glutathione-coordinated [2Fe–2S] cluster
Cited by: 12
Author(s): Mohnad Abdalla, Ya-Nan Dai, Biao Chang, Cheng Wang, Dong Cao, Kang Zhou, Wafa Bel Haj Ali, Yuxing Chen, Cong Zhou
Software Mentions: 1
Published: almost 10 years ago
10.1107/S2053230X1500549X
Structure of<i>Plasmodium falciparum</i>orotate phosphoribosyltransferase with autologous inhibitory protein–protein interactions
Cited by: 8
Author(s): Sanjiv Kumar, Kalyanaraman Krishnamoorthy, Devaraja G. Mudeppa, Pradipsinh K. Rathod
Software Mentions: 1
Published: about 11 years ago
10.1107/S2053230X15017896
Structure of the HIV-1 reverse transcriptase Q151M mutant: insights into the inhibitor resistance of HIV-1 reverse transcriptase and the structure of the nucleotide-binding pocket of<i>Hepatitis B virus</i>polymerase
Cited by: 7
Author(s): Akiyoshi Nakamura, Noriko Tamura, Y. Yasutake
Software Mentions: 1
Published: over 10 years ago
10.1107/S2053230X2100738X
Conformational changes of loops highlight a potential binding site in <i>Rhodococcus equi</i> VapB
Cited by: 2
Author(s): Christina Geerds, Albert Haas, Hartmut H. Niemann
Software Mentions: 1
Published: almost 5 years ago
10.1107/S1744309109012767
<i>Geobacillus stearothermophilus</i>6-phosphogluconate dehydrogenase complexed with 6-phosphogluconate
Cited by: 10
Author(s): Scott Cameron, Viviane Paula Martini, J. Iulek, William N. Hunter
Software Mentions: 1
Published: about 17 years ago
10.1107/S1744309111029009
Inhibitor-bound complexes of dihydrofolate reductase-thymidylate synthase from<i>Babesia bovis</i>
Cited by: 15
Author(s): Darren W. Begley, Thomas E. Edwards, Amy Raymond, Eric R Smith, Robert C. Hartley, Jan Abendroth, Banumathi Sankaran, Donald D. Lorimer, Peter J. Myler, Bart L. Staker, Lance Stewart
Software Mentions: 1
Published: almost 15 years ago
10.1107/S174430911102690X
Structure of fumarate hydratase from<i>Rickettsia prowazekii</i>, the agent of typhus and suspected relative of the mitochondria
Cited by: 3
Author(s): Isabelle Phan, Sandhya Subramanian, Christian A. Olsen, Thomas E. Edwards, Wenjin Guo, Yang Zhang, Wesley C. Van Voorhis, Lance Stewart, Peter J. Myler
Software Mentions: 1
Published: almost 15 years ago
10.1107/S1744309111004349
Structures of phosphopantetheine adenylyltransferase from<i>Burkholderia pseudomallei</i>
Cited by: 12
Author(s): Thomas E. Edwards, D.J. Leibly, Janhavi Bhandari, Jacob B. Statnekov, Isabelle Phan, Shellie H. Dieterich, Jan Abendroth, Bart L. Staker, Wesley C. Van Voorhis, Peter J. Myler, Lance Stewart
Software Mentions: 1
Published: almost 15 years ago
10.1107/S1744309108024044
Structure of the catalytic domain of<i>Streptococcus pneumoniae</i>sialidase NanA
Cited by: 39
Author(s): Guogang Xu, Xuejun Li, Peter W. Andrew, G.L. Taylor
Software Mentions: 1
Published: almost 18 years ago
10.1107/S1744309111027424
<i>Gene Composer</i>in a structural genomics environment
Cited by: 5
Author(s): Don Lorimer, Amy Raymond, Mark B. Mixon, Alex B. Burgin, Bart L. Staker, Lance Stewart
Software Mentions: 1
Published: almost 15 years ago
10.1107/S1744309111004386
NMR structure of an acyl-carrier protein from<i>Borrelia burgdorferi</i>
Cited by: 5
Author(s): Ravi Pratap Barnwal, Wesley C. Van Voorhis, Gabriele Varani
Software Mentions: 1
Published: almost 15 years ago
10.1107/S174430911302126X
Structural analysis of DNA–protein complexes regulating the restriction–modification system<i>Esp</i>1396I
Cited by: 6
Author(s): Richard N. A. Martin, J.E. McGeehan, Neil J. Ball, Simon Streeter, Sarah Thresh, Geoff Kneale
Software Mentions: 1
Published: almost 13 years ago
10.1107/S1744309110020166
Structures of three members of Pfam PF02663 (FmdE) implicated in microbial methanogenesis reveal a conserved α+β core domain and an auxiliary C-terminal treble-clef zinc finger
Cited by: 7
Author(s): Herbert L. Axelrod, Debanu Das, Polat Abdubek, Tamara Astakhova, Constantina Bakolitsa, Dennis Carlton, Connie Chen, Hsiu Ju Chiu, Thomas Clayton, Marc C. Deller, Lian Duan, Kyle Ellrott, Carol L. Farr, Julie Feuerhelm, Joanna C Grant, Anna Grzechnik, Gye Won Han, Lukasz Jaroszewski, Kevin K. Jin, Heath E. Klock, Mark W. Knuth, Piotr Koźbiał, Sanjeev Krishna, Abhinav Kumar, Winnie Lam, David Marciano, Daniel McMullan, Mitchell D. Miller, Andrew Morse, Edward Nigoghossian, Amanda Nopakun, Linda Okach, Christina Puckett, Ron Reyes, Natasha Sefcovic, Henry J Tien, Christine B Trame, H. van den Bedem, Dana Weekes, Tiffany Wooten, Qingping Xu, Keith O. Hodgson, John Wooley, Marc‐André Elsliger, Ashley M. Deacon, Adam Godzik, Scott A. Lesley, Ian A. Wilson
Software Mentions: 1
Published: almost 16 years ago
10.1107/S1744309111006336
Solution structure of an arsenate reductase-related protein, YffB, from<i>Brucella melitensis</i>, the etiological agent responsible for brucellosis
Cited by: 4
Author(s): Garry W. Buchko, Stephen N. Hewitt, Alberto J. Napuli, Wesley C. Van Voorhis, Peter J. Myler
Software Mentions: 1
Published: almost 15 years ago
10.1107/S1744309109046788
The structure of BVU2987 from<i>Bacteroides vulgatus</i>reveals a superfamily of bacterial periplasmic proteins with possible inhibitory function
Cited by: 8
Author(s): Debanu Das, Alex Bateman, Dennis Carlton, Mitchell D. Miller, Polat Abdubek, Tamara Astakhova, Herbert L. Axelrod, Constantina Bakolitsa, Connie Chen, Hsiu Ju Chiu, Michelle Chiu, Thomas Clayton, Marc C. Deller, Lian Duan, Kyle Ellrott, Dustin C. Ernst, Carol L. Farr, Julie Feuerhelm, Joanna C Grant, Anna Grzechnik, Gye Won Han, Lukasz Jaroszewski, Kevin K. Jin, Heath E. Klock, Mark W. Knuth, Piotr Koźbiał, Sanjeev Krishna, Abhinav Kumar, David Marciano, Daniel McMullan, Andrew Morse, Edward Nigoghossian, Amanda Nopakun, Linda Okach, Christina Puckett, Ron Reyes, Christopher L. Rife, Natasha Sefcovic, Henry J Tien, Christine B Trame, H. van den Bedem, Dana Weekes, Tiffany Wooten, Qingping Xu, Keith O. Hodgson, John Wooley, Marc‐André Elsliger, Ashley M. Deacon, Adam Godzik, Scott A. Lesley, Ian A. Wilson
Software Mentions: 1
Published: over 16 years ago
10.1107/S1744309108037056
Purification, crystallization and X-ray structures of the two manganese superoxide dismutases from<i>Caenorhabditis elegans</i>
Cited by: 16
Author(s): Chi H. Trinh, Thérèse Hunter, Emma E. Stewart, Simon E. V. Phillips, Gary J. Hunter
Software Mentions: 1
Published: over 17 years ago
10.1107/S1744309113026857
Structures of<i>Saccharomyces cerevisiae</i><scp>D</scp>-arabinose dehydrogenase Ara1 and its complex with NADPH: implications for cofactor-assisted substrate recognition
Cited by: 5
Author(s): Xinning Hu, Pengchao Guo, Jinming Ma, Weifang Li
Software Mentions: 1
Published: over 12 years ago
10.1107/S1744309109022672
The structure of the first representative of Pfam family PF09836 reveals a two-domain organization and suggests involvement in transcriptional regulation
Cited by: 8
Author(s): Debanu Das, Nick V. Grishin, Abhinav Kumar, Dennis Carlton, Constantina Bakolitsa, Mitchell D. Miller, Polat Abdubek, Tamara Astakhova, Herbert L. Axelrod, Prasad Burra, Connie Chen, Hsiu Ju Chiu, Michelle Chiu, Thomas Clayton, Marc C. Deller, Lian Duan, Kyle Ellrott, Dustin C. Ernst, Carol L. Farr, Julie Feuerhelm, Anna Grzechnik, Slawomir K. Grzechnik, Joanna C Grant, Gye Won Han, Lukasz Jaroszewski, Kevin K. Jin, Hope A. Johnson, Heath E. Klock, Mark W. Knuth, Piotr Koźbiał, Sanjeev Krishna, David Marciano, Daniel McMullan, Andrew Morse, Edward Nigoghossian, Amanda Nopakun, Linda Okach, Silvya Oommachen, Jessica Paulsen, Christina Puckett, Ron Reyes, Christopher L. Rife, Natasha Sefcovic, Henry J Tien, Christine B Trame, H. van den Bedem, Dana Weekes, Tiffany Wooten, Qingping Xu, Keith O. Hodgson, John Wooley, Marc‐André Elsliger, Ashley M. Deacon, Adam Godzik, Scott A. Lesley, Ian A. Wilson
Software Mentions: 1
Published: over 16 years ago
10.1107/S1744309113003369
Structure of the hypothetical DUF1811-family protein GK0453 from<i>Geobacillus kaustophilus</i>HTA426
Cited by: 0
Author(s): Balasundaram Padmanabhan, Yoshihiro Nakamura, S.V. Antonyuk, R.W. Strange, S.S. Hasnain, Shigeyuki Yokoyama, Yoshitaka Bessho
Software Mentions: 1
Published: over 13 years ago
10.1107/S1744309111009493
Structures of a putative ζ-class glutathione<i>S</i>-transferase from the pathogenic fungus<i>Coccidioides immitis</i>
Cited by: 6
Author(s): Thomas E. Edwards, Cassie M. Bryan, D.J. Leibly, Shellie H. Dieterich, Jan Abendroth, Banumathi Sankaran, Dhileep Sivam, Bart L. Staker, Wesley C. Van Voorhis, Peter J. Myler, Lance Stewart
Software Mentions: 1
Published: almost 15 years ago
10.1107/S174430911004724X
Structure of recombinant<i>Leishmania donovani</i>pteridine reductase reveals a disordered active site
Cited by: 22
Author(s): K.L. Barrack, L.B. Tulloch, Lynsey-Ann Burke, Paul K. Fyfe, William N. Hunter
Software Mentions: 1
Published: over 15 years ago
10.1107/S174430911101894X
Structure of fructose bisphosphate aldolase from<i>Bartonella henselae</i>bound to fructose 1,6-bisphosphate
Cited by: 4
Author(s): A.S. Gardberg, Jan Abendroth, Janhavi Bhandari, Banumathi Sankaran, Bart L. Staker
Software Mentions: 1
Published: almost 15 years ago
10.1107/S1744309111040267
Therapeutic target-site variability in α<sub>1</sub>-antitrypsin characterized at high resolution
Cited by: 38
Author(s): Anathe O.M. Patschull, Lakshmi Segu, Mun Peak Nyon, David A. Lomas, Irene Nobeli, Tracey E. Barrett, Bibek Gooptu
Software Mentions: 1
Published: over 14 years ago
10.1107/S1744309108044114
Substrate binding induces structural changes in cytochrome P450cam
Cited by: 10
Author(s): Keisuke Sakurai, Hideo Shimada, Takashi Hayashi, Tomitake Tsukihara
Software Mentions: 1
Published: over 17 years ago
10.1107/S1744309113030613
Structure of the uracil complex of<i>Vaccinia virus</i>uracil DNA glycosylase
Cited by: 6
Author(s): Norbert Schormann, Surajit Banerjee, Robert P. Ricciardi, Debasish Chattopadhyay
Software Mentions: 1
Published: over 12 years ago
10.1107/S1744309110002514
The structure of SSO2064, the first representative of Pfam family PF01796, reveals a novel two-domain zinc-ribbon OB-fold architecture with a potential acyl-CoA-binding role
Cited by: 17
Author(s): Sanjeev Krishna, L. Aravind, Constantina Bakolitsa, J.M. Caruthers, Dennis Carlton, Mitchell D. Miller, Polat Abdubek, Tamara Astakhova, Herbert L. Axelrod, Hsiu Ju Chiu, Thomas Clayton, Marc C. Deller, Lian Duan, Julie Feuerhelm, Joanna C Grant, Gye Won Han, Lukasz Jaroszewski, Kevin K. Jin, Heath E. Klock, Mark W. Knuth, Abhinav Kumar, David Marciano, Daniel McMullan, Andrew Morse, Edward Nigoghossian, Linda Okach, Ron Reyes, Christopher L. Rife, H. van den Bedem, Dana Weekes, Qingping Xu, Keith O. Hodgson, John Wooley, Marc‐André Elsliger, Ashley M. Deacon, Adam Godzik, Scott A. Lesley, Ian A. Wilson
Software Mentions: 1
Published: over 16 years ago
10.1107/S1744309111012346
Comparative analysis of glutaredoxin domains from bacterial opportunistic pathogens
Cited by: 9
Author(s): Thomas C. Leeper, Suxin Zhang, Wesley C. Van Voorhis, Peter J. Myler, Gabriele Varani
Software Mentions: 1
Published: almost 15 years ago
10.1107/S1744309110021688
The structure of<i>Haemophilus influenzae</i>prephenate dehydrogenase suggests unique features of bifunctional TyrA enzymes
Cited by: 13
Author(s): Hsiu Ju Chiu, Polat Abdubek, Tamara Astakhova, Herbert L. Axelrod, Dennis Carlton, Thomas Clayton, Debanu Das, Marc C. Deller, Lian Duan, Julie Feuerhelm, Joanna C Grant, Anna Grzechnik, Gye Won Han, Lukasz Jaroszewski, Kevin K. Jin, Heath E. Klock, Mark W. Knuth, Piotr Koźbiał, Sanjeev Krishna, Abhinav Kumar, David Marciano, Daniel McMullan, Mitchell D. Miller, Andrew Morse, Edward Nigoghossian, Linda Okach, Ron Reyes, Henry J Tien, Christine B Trame, Henry van den Bedem, Dana Weekes, Qingping Xu, Keith O. Hodgson, John Wooley, Marc‐André Elsliger, Ashley M. Deacon, Adam Godzik, Scott A. Lesley, Ian A. Wilson
Software Mentions: 1
Published: almost 16 years ago
10.1107/S1744309108036373
Structure of a xenon derivative of<i>Escherichia coli</i>copper amine oxidase: confirmation of the proposed oxygen-entry pathway
Cited by: 14
Author(s): P. Pirrat, Mark A. Smith, Arwen R. Pearson, Michael J. McPherson, Simon E. V. Phillips
Software Mentions: 1
Published: over 17 years ago
10.1107/S1744309109018168
The structure of KPN03535 (gi|152972051), a novel putative lipoprotein from<i>Klebsiella pneumoniae</i>, reveals an OB-fold
Cited by: 2
Author(s): Debanu Das, Piotr Koźbiał, Gye Won Han, Dennis Carlton, Lukasz Jaroszewski, Polat Abdubek, Tamara Astakhova, Herbert L. Axelrod, Constantina Bakolitsa, Connie Chen, Hsiu Ju Chiu, Michelle Chiu, Thomas Clayton, Marc C. Deller, Lian Duan, Kyle Ellrott, Marc‐André Elsliger, Dustin C. Ernst, Carol L. Farr, Julie Feuerhelm, Anna Grzechnik, Joanna C Grant, Kevin K. Jin, Hope A. Johnson, Heath E. Klock, Mark W. Knuth, Sanjeev Krishna, Abhinav Kumar, David Marciano, Daniel McMullan, Mitchell D. Miller, Andrew Morse, Edward Nigoghossian, Amanda Nopakun, Linda Okach, Silvya Oommachen, Jessica Paulsen, Christina Puckett, Ron Reyes, Christopher L. Rife, Natasha Sefcovic, Henry J Tien, Christine B Trame, H. van den Bedem, Dana Weekes, Tiffany Wooten, Qingping Xu, Keith O. Hodgson, John Wooley, Ashley M. Deacon, Adam Godzik, Scott A. Lesley, Ian A. Wilson
Software Mentions: 1
Published: over 16 years ago
10.1107/S1744309113031448
Two high-resolution structures of the human E3 ubiquitin ligase Siah1
Cited by: 9
Author(s): V. Rimsa, T.C. Eadsforth, William N. Hunter
Software Mentions: 1
Published: over 12 years ago
10.32607/20758251-2019-11-3-56-65
The Structural and Immunological Properties of Chimeric Proteins Containing HIV-1 MPER Sites
Cited by: 1
Author(s): А. П. Рудометов, Надежда Б. Рудометова, Д. Н. Щербаков, Alexander A. Lomzov, О. Н. Каплина, Н. С. Щербакова, Alexander A. Ilyichev, Anastasia Bakulina, Larisa I. Karpenko
Software Mentions: 1
Published: almost 7 years ago
10.1186/2051-5960-2-55
Conformational specificity of the C4F6 SOD1 antibody; low frequency of reactivity in sporadic ALS cases
Cited by: 42
Author(s): Jacob I. Ayers, Guilian Xu, Olga Pletniková, Juan C. Troncoso, P. John Hart, David R. Borchelt
Software Mentions: 1
Published: about 12 years ago
10.1186/2051-5960-2-43
Oligomer-targeting with a conformational antibody fragment promotes toxicity in Aβ-expressing flies
Cited by: 9
Author(s): Jessica Wacker, Raik Rönicke, Martin Westermann, Melanie Wulff, Klaus G. Reymann, Christopher M. Dobson, Uwe Horn, Damian C. Crowther, Leila M. Luheshi, Marcus Fändrich
Software Mentions: 1
Published: over 12 years ago
10.1155/2019/6912914
<i>In Silico</i>Screening of Aptamers Configuration against Hepatitis B Surface Antigen
Cited by: 20
Author(s): M. Sabri, Azzmer Azzar Abdul Hamid, Sharifah Mariam Sayed Hitam, Mohd. Zulkhairi Abdul Rahim
Software Mentions: 1
Published: about 7 years ago
10.1155/2015/278197
A Highly Conserved GEQYQQLR Epitope Has Been Identified in the Nucleoprotein of Ebola Virus by Using an In Silico Approach
Cited by: 12
Author(s): Mohammad Tuhin Ali, Ovinu Kibria Islam
Software Mentions: 1
Published: over 11 years ago
10.15171/apb.2019.074
The Comparison Between the Mutated HuIFN-β 27-101 and the WildType Interferon β: the Comprehensive In Silico Study to Evaluate theEffect of Mutations on IFN-β
Cited by: 0
Author(s): Sayed Sharif Balkhi, Zohreh Hojati
Software Mentions: 1
Published: over 6 years ago
10.1002/advs.202002306
Curcumol Overcomes TRAIL Resistance of Non‐Small Cell Lung Cancer by Targeting NRH:Quinone Oxidoreductase 2 (NQO2)
Cited by: 32
Author(s): Jing Zhang, Ye Zhou, Nan Li, Wan-Ting Liu, Jun-Ze Liang, Yue Sun, Wei-Xia Zhang, Run-Dong Fang, Shengling Huang, Zhi Sun, Yang Wang, Qing‐Yu He
Software Mentions: 1
Published: almost 6 years ago
10.1002/advs.201700664
A Ultrasensitive Near-Infrared Fluorescent Probe Reveals Pyroglutamate Aminopeptidase 1 Can Be a New Inflammatory Cytokine
Cited by: 26
Author(s): Qiuyu Gong, Ruifen Zou, Jie Xing, Lingchao Xiang, Renshuai Zhang, Aiguo Wu
Software Mentions: 1
Published: over 8 years ago
10.1002/advs.202100832
Learning from Nature: From a Marine Natural Product to Synthetic Cyclooxygenase‐1 Inhibitors by Automated De Novo Design
Cited by: 12
Author(s): Lukas Friedrich, Gino Cingolani, Ying‐Hui Ko, Mariaclara Iaselli, Morena Miciaccia, Maria Grazia Perrone, Konstantin Neukirch, Veronika Bobinger, Daniel Merk, R. Hofstetter, Oliver Werz, Andreas Koeberle, Antonio Scilimati, Gisbert Schneider
Software Mentions: 1
Published: about 5 years ago
10.1002/advs.202003167
Association of Fluorescent Protein Pairs and Its Significant Impact on Fluorescence and Energy Transfer
Cited by: 7
Author(s): Jacob R. Pope, Rachel L. Johnson, William David Jamieson, Harley L. Worthy, Senthilkumar Kailasam, Rochelle D Ahmed, Ismail M. Taban, Husam Sabah Auhim, Daniel W. Watkins, P.J. Rizkallah, Oliver K. Castell, D. Dafydd Jones
Software Mentions: 1
Published: over 5 years ago
10.1002/advs.202004685
Functional Features and Current Applications of the RNA‐Targeting Type VI CRISPR‐Cas Systems
Cited by: 21
Author(s): Vanja Perčulija, Jie Lin, Bo Zhang, Songying Ouyang
Software Mentions: 1
Published: about 5 years ago
10.1002/advs.202003091
Avidity‐Based Selection of Tissue‐Specific CAR‐T Cells from a Combinatorial Cellular Library of CARs
Cited by: 8
Author(s): Peixiang Ma, Ping Ren, Chuyue Zhang, Jiaxing Tang, Yu Zheng, Xuekai Zhu, Kun Fan, Guanglei Li, Wei Zhu, Wei Sang, Chenyu Min, Wenzhang Chen, Xingxu Huang, Guang Yang, Richard A. Lerner
Software Mentions: 1
Published: over 5 years ago
10.18632/aging.203259
α-Cyperone (CYP) down-regulates NF-κB and MAPKs signaling, attenuating inflammation and extracellular matrix degradation in chondrocytes, to ameliorate osteoarthritis in mice
Cited by: 8
Author(s): Huawei Zhang, Sunlong Li, Jiajie Lu, Jie Jin, Gaosheng Zhu, Libo Wang, Yuhan Yan, Linjie He, Ben Wang, Xiangyang Wang, Huachen Yu
Software Mentions: 1
Published: about 5 years ago
10.1111/acel.13408
Mitochondrial mistranslation modulated by metabolic stress causes cardiovascular disease and reduced lifespan
Cited by: 8
Author(s): Tara R. Richman, Judith A. Ermer, Stefan J. Siira, Irina Kuznetsova, Christopher A. Brosnan, Giulia Rossetti, Jessica Baker, Kara L. Perks, Henrietta Cserné Szappanos, Helena M. Viola, Nicola Gray, Mark Larance, Livia C. Hool, Steven Zuryn, Oliver Rackham, Aleksandra Filipovska
Software Mentions: 1
Published: about 5 years ago
10.1111/acel.12390
Inhibition of elongin C promotes longevity and protein homeostasis via<scp>HIF</scp>‐1 in<i>C. elegans</i>
Cited by: 19
Author(s): Wooseon Hwang, Murat Artan, Mihwa Seo, Dong-Yeop Lee, Hong Gil Nam, Seung-Jae Lee
Software Mentions: 1
Published: almost 11 years ago
10.1186/alzrt277
Identification of structural determinants on tau protein essential for its pathological function: novel therapeutic target for tau immunotherapy in Alzheimer’s disease
Cited by: 93
Author(s): Eva Kontseková, Norbert Žilka, Branislav Kováčech, Rostislav Škrabana, Michal Novák
Software Mentions: 1
Published: over 12 years ago
10.1016/j.ajhg.2017.08.015
Biallelic C1QBP Mutations Cause Severe Neonatal-, Childhood-, or Later-Onset Cardiomyopathy Associated with Combined Respiratory-Chain Deficiencies
Cited by: 54
Author(s): René G. Feichtinger, Monika Oláhová, Yoshihito Kishita, Caterina Garone, Laura S. Kremer, Minoru Yagi, Takeshi Uchiumi, Alexis A. Jourdain, Kyle Thompson, Aaron R. D’Souza, Robert Kopajtich, Charlotte L. Alston, Johannes Koch, Wolfgang Sperl, Elisa Mastantuono, Tim M. Strom, Saskia B. Wortmann, Thomas Meitinger, Germaine Pierre, Patrick F. Chinnery, Zofia M.A. Chrzanowska-Lightowlers, Robert N. Lightowlers, Salvatore DiMauro, Sarah E. Calvo, Vamsi K. Mootha, Maurizio Moggio, Monica Sciacco, Giacomo Pietro Comi, Dario Ronchi, Kei Murayama, Akira Ohtake, Pedro Rebelo-Guiomar, Masakazu Kohda, Dongchon Kang, Johannes A. Mayr, Robert W. Taylor, Yasushi Okazaki, Michal Minczuk, Holger Prokisch
Software Mentions: 1
Published: almost 9 years ago
10.1016/j.ajhg.2020.01.018
Opposite Modulation of RAC1 by Mutations in TRIO Is Associated with Distinct, Domain-Specific Neurodevelopmental Disorders
Cited by: 51
Author(s): Sónia Barbosa, Stephanie Greville‐Heygate, Maxime Bonnet, Annie Godwin, Christine Fagotto‐Kaufmann, Andrey V. Kajava, Damien Laouteouet, Rebecca Mawby, Diana Baralle, Alexander J.M. Dingemans, Jayne Y. Hehir-Kwa, Marjorlaine Willems, Yline Capri, Sarju G. Mehta, Helen Cox, David Goudie, Fleur Vansenne, Peter D. Turnpenny, Marie Vincent, Benjamin Cogné, Gaëtan Lesca, Jozef Hertecant, Diana Rodriguez, Boris Keren, Lydie Bürglen, Marion Gérard, Audrey Putoux, Vincent Cantagrel, Karine Siquier-Pernet, Marlène Rio, Siddharth Banka, Ajoy K. Sarkar, Marcie Steeves, Michael Parker, Emma Clement, Sébastien Moutton, Frédéric Tran Mau-Them, Amélie Piton, Bert B.A. de Vries, Matthew Guille, Anne Debant, Susanne Schmidt, Diana Baralle
Software Mentions: 1
Published: over 6 years ago
10.1016/j.ajhg.2020.10.012
De Novo VPS4A Mutations Cause Multisystem Disease with Abnormal Neurodevelopment
Cited by: 32
Author(s): Catherine E. Rodger, Elisabetta Flex, Rachel Allison, Alba Sanchis-Juan, Marcia Anahí Hasenahuer, Serena Cecchetti, Courtney French, James R. Edgar, Giovanna Carpentieri, Andrea Ciolfi, Francesca Pantaleoni, Alessandro Bruselles, Roberta Onesimo, Giuseppe Zampino, Francesca Marcon, Ester Siniscalchi, Melissa Lees, Deepa Krishnakumar, Emma McCann, Dragana Yosifova, Joanna Jarvis, Michael C. Kruer, Warren A. Marks, Jonathan J. Campbell, Louise Allen, Stefano Gustincich, F. Lucy Raymond, Marco Tartaglia, Evan Reid
Software Mentions: 1
Published: over 5 years ago
10.1007/s00726-012-1376-x
Characterizing circular peptides in mixtures: sequence fragment assembly of cyclotides from a violet plant by MALDI-TOF/TOF mass spectrometry
Cited by: 45
Author(s): Hossein Hashempour, Johannes Koehbach, Norelle L. Daly, Alireza Ghassempour, Christian W. Gruber
Software Mentions: 1
Published: almost 14 years ago
10.1007/s00726-018-2654-z
Regulation of carbamoylphosphate synthesis in Escherichia coli: an amazing metabolite at the crossroad of arginine and pyrimidine biosynthesis
Cited by: 27
Author(s): Daniël Charlier, Phu Nguyen Le Minh, Martine Roovers
Software Mentions: 1
Published: almost 8 years ago
10.1016/j.ab.2009.07.004
Differential binding of tropomyosin isoforms to actin modified with m-maleimidobenzoyl-N-hydroxysuccinimide ester and fluorescein-5-isothiocyanate
Cited by: 5
Author(s): Radosław Skórzewski, Katarzyna Robaszkiewicz, Justyna Jarzębińska, Piotr Suder, Jerzy Silberring, Joanna Moraczewska
Software Mentions: 1
Published: over 16 years ago
10.1021/acs.analchem.1c01850
Evaluation of the Higher Order Structure of Biotherapeutics Embedded in Hydrogels for Bioprinting and Drug Release
Cited by: 5
Author(s): Domenico Rizzo, Linda Cerofolini, Anna Pérez-Ràfols, Stefano Giuntini, Fabio Baroni, Enrico Ravera, Claudio Luchinat, Marco Fragai
Software Mentions: 1
Published: almost 5 years ago
10.1002/anie.201803395
Cu[B<sub>2</sub>(SO<sub>4</sub>)<sub>4</sub>] and Cu[B(SO<sub>4</sub>)<sub>2</sub>(HSO<sub>4</sub>)]—Two Silicate Analogue Borosulfates Differing in their Dimensionality: A Comparative Study of Stability and Acidity
Cited by: 29
Author(s): Jörn Bruns, Maren Podewitz, Klaus R. Liedl, Oliver Janka, Rainer Pöttgen, Hubert Huppertz
Software Mentions: 1
Published: about 8 years ago
10.1002/anie.201403745
Direct Sensing of 5-Methylcytosine by Polymerase Chain Reaction
Cited by: 23
Author(s): Joos Aschenbrenner, Matthias Drum, Hüsnü Topal, Markus Wieland, Andreas Marx
Software Mentions: 1
Published: about 12 years ago
10.1002/anie.202101186
<i>E. coli</i> Nickel‐Iron Hydrogenase 1 Catalyses Non‐native Reduction of Flavins: Demonstration for Alkene Hydrogenation by Old Yellow Enzyme Ene‐reductases**
Cited by: 7
Author(s): Shiny Joseph Srinivasan, Sarah Cleary, M. A. Ramírez, Holly A. Reeve, Caroline E. Paul, Kylie A. Vincent
Software Mentions: 1
Published: about 5 years ago
10.1007/s10456-013-9389-y
A peptide derived from TIMP-3 inhibits multiple angiogenic growth factor receptors and tumour growth and inflammatory arthritis in mice
Cited by: 21
Author(s): Chen Yy, Nicola J. Brown, Russell Jones, Claire E. Lewis, Ahmed H. Mujamammi, Munitta Muthana, Michael Seed, Michael D. Barker
Software Mentions: 1
Published: almost 13 years ago
10.1080/07853890.2021.1918345
Multi-target mechanism of<i>Tripteryguim wilfordii</i>Hook for treatment of ankylosing spondylitis based on network pharmacology and molecular docking
Cited by: 25
Author(s): Jilei Zhang, Yixi Zhou, Zhiyuan Ma
Software Mentions: 1
Published: over 5 years ago
10.3390/antibiotics8040238
Increases in Hydrophilicity and Charge on the Polar Face of Alyteserin 1c Helix Change its Selectivity towards Gram-Positive Bacteria
Cited by: 26
Author(s): Yamil Liscano, Constaín H. Salamanca, Lina Vargas, Stefania Cantor, Valentina Laverde-Rojas, José Oñate-Garzón
Software Mentions: 1
Published: over 6 years ago
10.3390/antibiotics10060709
New Trimethoprim-Like Molecules: Bacteriological Evaluation and Insights into Their Action
Cited by: 5
Author(s): Marta Jorba, Marina Pedrola, Ouldouz Ghashghaei, Rocío Herráez, Lluís Campos-Vicens, F. Javier Luque, Miguel Viñas
Software Mentions: 1
Published: about 5 years ago
10.3390/antibiotics10091109
The Biology of Colicin M and Its Orthologs
Cited by: 8
Author(s): Dimitri Chérier, Delphine Patin, Didier Blanot, Thierry Touzé, Hélène Barreteau
Software Mentions: 1
Published: almost 5 years ago
10.3390/antibiotics9060313
Tiamulin-Resistant Mutants of the Thermophilic Bacterium Thermus thermophilus
Cited by: 4
Author(s): Erin E. Killeavy, G. Jogl, Steven T. Gregory
Software Mentions: 1
Published: about 6 years ago
10.3390/antibiotics8020070
Contributions of Net Charge on the PlyC Endolysin CHAP Domain
Cited by: 9
Author(s): Xiaoran Shang, Daniel Nelson
Software Mentions: 1
Published: about 7 years ago