10.1186/s12866-020-01805-8

The model cyanobacteria Anabaena sp. PCC 7120 possess an intact but partially degenerated gene cluster encoding gas vesicles
Cited by: 7
Author(s): Kun Cai, Bo-Ying Xu, Yong-Liang Jiang, Ying Wang, Yuxing Chen, Cong‐Zhao Zhou, Qiong Li
Software Mentions: 1
Published: about 6 years ago

10.1186/s12866-021-02172-8

The rumen eukaryotome is a source of novel antimicrobial peptides with therapeutic potential
Cited by: 9
Author(s): Lucy A. Onime, Linda Oyama, Benjamin Thomas, Jurnorain Gani, Peter G. Alexander, Kate Waddams, Alan Cookson, Narcís Fernández-Fuentes, Christopher J. Creevey, Sharon Huws
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2180-13-79

Two RND proteins involved in heavy metal efflux in Caulobacter crescentus belong to separate clusters within proteobacteria
Cited by: 30
Author(s): Estela Y. Valencia, Vânia Santos Braz, Cristiane R. Guzzo, Marilis V. Marques
Software Mentions: 1
Published: over 13 years ago

10.1186/s12866-020-01823-6

Discovery of 20 novel ribosomal leader candidates in bacteria and archaea
Cited by: 9
Author(s): Iris Eckert, Zasha Weinberg
Software Mentions: 1
Published: about 6 years ago

10.1186/s12866-016-0717-4

Corynebacterium pseudotuberculosis may be under anagenesis and biovar Equi forms biovar Ovis: a phylogenic inference from sequence and structural analysis
Cited by: 11
Author(s): Alberto de Oliveira, Teixeira Pammella, Marcela Santiago Pacheco de Azevedo, Syed Babar Jamal, Sandeep Tiwari, Síntia Almeida, Artur M. S. Silva, Debmalya Barh, Elaine Maria Seles Dorneles, Dionei Joaquim Haas, Marcos Bryan Heinemann, Preetam Ghosh, Andrey Pereira Lage, Henrique César Pereira Figueiredo, Rafaela Salgado Ferreira, Vasco Azevedo
Software Mentions: 1
Published: about 10 years ago

10.1186/s12866-018-1179-7

Genetic variability in the sdrD gene in Staphylococcus aureus from healthy nasal carriers
Cited by: 9
Author(s): Clement Ajayi, Espen Åberg, Fatemeh Askarian, Johanna U. Ericson Sollid, Mona Johannessen, Anne Merethe Hanssen
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2180-14-101

L-alanine-induced germination in Bacillus licheniformis -the impact of native gerA sequences
Cited by: 17
Author(s): Elisabeth Henie Madslien, Per Einar Granum, Janet Martha Blatny, Toril Lindbäck
Software Mentions: 1
Published: about 12 years ago

10.1186/1471-2180-10-295

Effects of site-directed mutagenesis of mglA on motility and swarming of Myxococcus xanthus
Cited by: 10
Author(s): Sarah A Fremgen, Neal S. Burke, Patricia L. Hartzell
Software Mentions: 1
Published: over 15 years ago

10.1186/s12866-016-0826-0

Bacteriophage tailspike protein based assay to monitor phase variable glucosylations in Salmonella O-antigens
Cited by: 36
Author(s): Andreas Schmidt, Wolfgang Rabsch, N.K. Broeker, Stefanie Barbirz
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12866-019-1577-5

Missense mutations in a transmembrane domain of the Komagataeibacter xylinus BcsA lead to changes in cellulose synthesis
Cited by: 10
Author(s): Luis Fernando Salgado, Silvia Blank, Reza Alipour Moghadam Esfahani, Janice L. Strap, Dario Bonetta
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12866-016-0853-x

In vivo functional and molecular characterization of the Penicillin-Binding Protein 4 (DacB) of Pseudomonas aeruginosa
Cited by: 13
Author(s): Cristian Gustavo Aguilera Rossi, Paulino Gómez‐Puertas, Juan A. Ayala
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12866-020-01912-6

Correlation of drug resistance with single nucleotide variations through genome analysis and experimental validation in a multi-drug resistant clinical isolate of M. tuberculosis
Cited by: 2
Author(s): Kausik Bhattacharyya, Vishal Nemaysh, Monika Joon, Ramendra Pratap, Mandira Varma-Basil, Mridula Bose, Vani Brahmachari
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2199-12-43

Characterization of the χψ subcomplex of Pseudomonas aeruginosa DNA polymerase III
Cited by: 5
Author(s): Sirine El Houry Mignan, Gregor Witte, Natalie Naue, Ute Curth
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2199-8-74

Rod-derived Cone Viability Factor-2 is a novel bifunctional-thioredoxin-like protein with therapeutic potential
Cited by: 60
Author(s): Frédéric Chalmel, Thierry Léveillard, C. Jaillard, Aurélie Lardenois, Naomi Berdugo, Emmanuelle Morel, Patrice Koehl, George N. Lambrou, Arne Holmgren, José‐Alain Sahel, Olivier Poch
Software Mentions: 1
Published: over 19 years ago

10.1186/s12860-019-0239-7

Binding of Brucella protein, Bp26, to select extracellular matrix molecules
Cited by: 8
Author(s): Yasmin ElTahir, Amna Al-Araimi, R. Nair, Kaija J. Autio, Hongmin Tu, Jack C. Leo, W. Al-Marzooqi, Eugene H. Johnson
Software Mentions: 1
Published: over 6 years ago

10.1186/s12860-019-0200-9

Ridge regression estimated linear probability model predictions of O-glycosylation in proteins with structural and sequence data
Cited by: 4
Author(s): Rajaram Gana, Sona Vasudevan
Software Mentions: 1
Published: about 7 years ago

10.1186/s12860-019-0219-y

In silico evidence of de novo interactions between ribosomal and Epstein - Barr virus proteins
Cited by: 2
Author(s): Edmund Ui Hang Sim, Shruti Prashant Talwar
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12860-019-0217-0

In silico prediction of structural changes in human papillomavirus type 16 (HPV16) E6 oncoprotein and its variants
Cited by: 8
Author(s): Hugo Alberto Rodríguez-Ruiz, Olga Lilia Garibay‐Cerdenares, Berenice Illades‐Aguiar, Sarita Montaño, Xiaowei Jiang, Marco Antonio Leyva‐Vázquez
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12860-019-0216-1

Characterization and engineering of a DNA polymerase reveals a single amino-acid substitution in the fingers subdomain to increase strand-displacement activity of A-family prokaryotic DNA polymerases
Cited by: 15
Author(s): Yvonne Piotrowski, Man Kumari Gurung, Atle Noralf Larsen
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12860-020-00293-y

Glutantβase: a database for improving the rational design of glucose-tolerant β-glucosidases
Cited by: 6
Author(s): Diego Mariano, Naiara Pantuza, Lucianna Helene Santos, Rafael E. O. Rocha, Leonardo Henrique França de Lima, Lucas Bleicher, Raquel Cardoso de Melo‐Minardi
Software Mentions: 1
Published: about 6 years ago

10.1186/s12860-019-0193-4

High resolution crystal structure of the FAK FERM domain reveals new insights on the Druggability of tyrosine 397 and the Src SH3 binding site
Cited by: 9
Author(s): Timothy Marlowe, Alexey Dementiev, Sheila Figel, Andrew Rivera, Michael T. Flavin, William G. Cance
Software Mentions: 1
Published: about 7 years ago

10.1186/s12891-020-03222-4

A novel p.A191D matrilin-3 variant in a Vietnamese family with multiple epiphyseal dysplasia: a case report
Cited by: 0
Author(s): Thuong Thi Ho, Linh Huyen Tran, Lan Thu Hoang, Phuong Kim Thi Doan, Trang Thi Kieu Nguyen, Trang Hong Nguyen, Hoai Thu Tran, Ha Hoang, Ha Hoang Chu, Anh Lan Thi Luong
Software Mentions: 1
Published: over 6 years ago

10.1186/s12868-018-0448-6

Differential modulation of human GABAC-ρ1 receptor by sulfur-containing compounds structurally related to taurine
Cited by: 4
Author(s): Lenin Ochoa-de la Paz, Martín González-Andrade, Herminia Pasantes‐Morales, Rodrigo Franco, Rubén Zamora-Alvarado, Edgar Zenteno, Hugo Quiróz-Mercado, Roberto Gonzales-Salinas, Rosario Gulías-Cañizo
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2202-9-S2-S9

Structure and regulation of MARK, a kinase involved in abnormal phosphorylation of Tau protein
Cited by: 53
Author(s): Thomas Timm, Alexander Marx, S. Panneerselvam, Eckhard Mandelkow, Eva‐Maria Mandelkow
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2415-14-108

A novel P20R mutation in the alpha-B crystallin gene causes autosomal dominant congenital posterior polar cataracts in a Chinese family
Cited by: 15
Author(s): Xinyi Xia, Qiuyue Wu, Li-mei An, Weiwei Li, Na Li, Tianfu Li, Cui Zhang, Ying‐Xia Cui, Xiaojun Li, Cong Xue
Software Mentions: 1
Published: almost 12 years ago

10.1186/2050-6511-15-68

Differences between murine arylamine N-acetyltransferase type 1 and human arylamine N-acetyltransferase type 2 defined by substrate specificity and inhibitor binding
Cited by: 11
Author(s): Nicola Laurieri, Akane Kawamura, Isaac M. Westwood, Amy Varney, Elizabeth Morris, Angela J. Russell, Lesley A. Stanley, Edith Sim
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2229-12-5

Analysis of ADP-glucose pyrophosphorylase expression during turion formation induced by abscisic acid in Spirodela polyrhiza (greater duckweed)
Cited by: 42
Author(s): Wenqin Wang, Joachim Messing
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2229-10-156

Structure-function relationships of wheat flavone O-methyltransferase: Homology modeling and site-directed mutagenesis
Cited by: 22
Author(s): Jian‐Min Zhou, Eunjung Lee, Francesca Kanapathy-Sinnaiaha, Younghee Park, Jack A. Kornblatt, Yoongho Lim, Ragai K. Ibrahim
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2229-14-161

The pathogenesis-related protein PR-4b from Theobroma cacao presents RNase activity, Ca2+ and Mg2+ dependent-DNase activity and antifungal action on Moniliophthora perniciosa
Cited by: 33
Author(s): Sara Pereira Menezes, Edson Mário de Andrade Silva, Eline Matos Lima, Aurizângela Oliveira de Sousa, Bruno Silva Andrade, Lívia Santos Lima Lemos, Karina Peres Gramacho, Abelmon da Silva Gesteira, Carlos Priminho Pirovani, Fabienne Micheli
Software Mentions: 1
Published: about 12 years ago

10.1186/s12870-018-1361-y

Molecular diversity and function of jasmintides from Jasminum sambac
Cited by: 7
Author(s): Geeta Kumari, Ka Ho Wong, Aida Serra, Joon Shin, Ho Sup Yoon, Siu Kwan Sze, James P. Tam
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2229-14-37

GIGANTUS1 (GTS1), a member of Transducin/WD40 protein superfamily, controls seed germination, growth and biomass accumulation through ribosome-biogenesis protein interactions in Arabidopsis thaliana
Cited by: 54
Author(s): Emma W. Gachomo, José Carlos Jiménez-López, Lyla Jno Baptiste, Simeon O. Kotchoni
Software Mentions: 1
Published: over 12 years ago

10.1186/s12870-015-0616-0

In vitro analyses of mitochondrial ATP/phosphate carriers from Arabidopsis thaliana revealed unexpected Ca2+-effects
Cited by: 25
Author(s): André Lorenz, Marcel Lorenz, Ute C. Vothknecht, Sandra Niopek-Witz, H. Ekkehard Neuhaus, Ilka Haferkamp
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12870-016-0732-5

Revisiting chromatin binding of the Arabidopsis UV-B photoreceptor UVR8
Cited by: 30
Author(s): Melanie Binkert, Carlos Daniel Crocco, Babatunde Ekundayo, Kelvin Lau, Sarah Raffelberg, Kimberley Tilbrook, Ruohe Yin, Richard Chappuis, Thomas Schalch, Roman Ulm
Software Mentions: 1
Published: over 10 years ago

10.1186/s12870-017-1042-2

Analysis of the lipid body proteome of the oleaginous alga Lobosphaera incisa
Cited by: 40
Author(s): Heike Siegler, Oliver Valerius, Till Ischebeck, Jennifer Popko, Nicolas J. Tourasse, Olivier Vallon, Inna Khozin‐Goldberg, Gerhard H. Braus, Ivo Feußner
Software Mentions: 1
Published: about 9 years ago

10.1186/s12870-014-0239-x

Positive Darwinian selection is a driving force for the diversification of terpenoid biosynthesis in the genus Oryza
Cited by: 28
Author(s): Hao Chen, Guanglin Li, Tobias G. Köllner, Qidong Jia, Jonathan Gershenzon, Feng Chen
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2229-14-149

Exploring the evolutionary route of the acquisition of betaine aldehyde dehydrogenase activity by plant ALDH10 enzymes: implications for the synthesis of the osmoprotectant glycine betaine
Cited by: 19
Author(s): Rosario A. Muñoz‐Clares, Héctor Riveros‐Rosas, Georgina Garza‐Ramos, Lilian González‐Segura, Carlos Mújica-Jiménez, Adriana Julián‐Sánchez
Software Mentions: 1
Published: over 12 years ago

10.1186/s12870-017-1007-5

Salicylic acid-related cotton (Gossypium arboreum) ribosomal protein GaRPL18 contributes to resistance to Verticillium dahliae
Cited by: 70
Author(s): Qian Gong, Zhaoen Yang, Xiaoqian Wang, Hamama Islam Butt, Eryong Chen, Shoupu He, Chaojun Zhang, Xueyan Zhang
Software Mentions: 1
Published: over 9 years ago

10.1186/s12870-019-1662-9

The expression of a tubby-like protein from Malus domestica (MdTLP7) enhances abiotic stress tolerance in Arabidopsis
Cited by: 20
Author(s): Jianing Xu, Shanshan Xing, Qinghua Sun, Chun-Yan Zhan, Xin Liu, Shizhong Zhang, Xiaoyun Wang
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2229-10-44

The Puf family of RNA-binding proteins in plants: phylogeny, structural modeling, activity and subcellular localization
Cited by: 76
Author(s): Patrick P.C. Tam, Isabelle Barrette-Ng, Dawn M. Simon, Michael W C Tam, Amanda L Ang, Douglas G. Muench
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2229-11-117

A single amino acid change within the R2 domain of the VvMYB5b transcription factor modulates affinity for protein partners and target promoters selectivity
Cited by: 34
Author(s): Imène Hichri, Laurent G. Deluc, François Barrieu, Jochen Bogs, Ali Ridha Mahjoub, Farid Regad, B. Gallois, T. Granier, Claudine Trossat-Magnin, Éric Gomès, Virginie Lauvergeat
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12870-019-1947-z

Evolutionary dynamic analyses on monocot flavonoid 3′-hydroxylase gene family reveal evidence of plant-environment interaction
Cited by: 20
Author(s): Yuping Jia, Bo Li, Yujuan Zhang, Xiaoqi Zhang, Yonghong Xu, Chengdao Li
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12870-019-2035-0

Molecular cloning and metabolomic characterization of the 5-enolpyruvylshikimate-3-phosphate synthase gene from Baphicacanthus cusia
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Author(s): Jian Yu, Yihan Zhang, Shuju Ning, Ye Qi, Hexin Tan, Ruibing Chen, Qitao Bu, Rui Zhang, Pei-Min Gong, Ma Xiang, Lei Zhang, Daozhi Wei
Software Mentions: 1
Published: over 6 years ago

10.1186/1753-6561-7-S7-S6

Highly precise protein-protein interaction prediction based on consensus between template-based and de novo docking methods
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Author(s): Masahito Ohue, Yasushi Matsuzaki, Takehiro Shimoda, Takashi Ishida, Yutaka Akiyama
Software Mentions: 1
Published: over 12 years ago

10.1186/1753-6561-8-S2-S3

FixingTIM: interactive exploration of sequence and structural data to identify functional mutations in protein families
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Author(s): Timothy Luciani, John Wenskovitch, Koonwah Chen, David Ryan Koes, Timothy Travers, G. Elisabeta Marai
Software Mentions: 1
Published: almost 12 years ago

10.1186/1753-6561-9-S1-A59

Revealing the impact of 17 mutations of human FMO3 protein associated with trimethylaminuria on its local spatial properties: a bioinformatic approach
Cited by: 0
Author(s): T. V. Borodina, SE Vakal
Software Mentions: 1
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10.1186/1756-0500-4-321

Homology modeling of mosquito cytochrome P450 enzymes involved in pyrethroid metabolism: insights into differences in substrate selectivity
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Author(s): Panida Lertkiatmongkol, Ekachai Jenwitheesuk, Pornpimol Rongnoparut
Software Mentions: 1
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10.1186/s13104-020-05364-z

In silico analysis of epitope-based CadF vaccine design against Campylobacter jejuni
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Author(s): Mona Moballegh Naseri, Saeed Shams, Mohammad Moballegh Naseri, Bita Bakhshi
Software Mentions: 1
Published: over 5 years ago

10.1186/1756-0500-7-713

Molecular cloning and in-silico characterization of high temperature stress responsive pAPX gene isolated from heat tolerant Indian wheat cv. Raj 3765
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Author(s): Jasdeep Chatrath Padaria, Harinder Vishwakarma, Koushik Biswas, Rahul Singh Jasrotia, Gyanendra Pratap Singh
Software Mentions: 1
Published: almost 12 years ago

10.1042/BCJ20210003

MAP4K4 expression in cardiomyocytes: multiple isoforms, multiple phosphorylations and interactions with striatins
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Author(s): Stephen J. Fuller, Nick S. Edmunds, Liam J. McGuffin, Michelle A Hardyman, Joshua J Cull, Hajed O Alharbi, Daniel N. Meijles, Peter H. Sugden, Angela Clerk
Software Mentions: 1
Published: about 5 years ago

10.1042/BCJ20200146

A bacteriophage mimic of the bacterial nucleoid-associated protein Fis
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Author(s): Soumyananda Chakraborti, Dhanasekaran Balakrishnan, Alexander J. Trotter, William Gittens, Ally Yang, Arttu Jolma, Joy R Paterson, S. Świątek, Jacek Plewka, Fiona A. Curtis, Laura Y. Bowers, Lars‐Olof Pålsson, Timothy R. Hughes, Michał Taube, Maciej Kozak, Jonathan G. Heddle, Gary J. Sharples
Software Mentions: 1
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10.1042/BCJ20200415

Nanobody generation and structural characterization of <i>Plasmodium falciparum</i> 6-cysteine protein Pf12p
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Author(s): M.H. Dietrich, Li‐Jin Chan, Amy Adair, Sravya Keremane, Phillip Pymm, Alvin W. Lo, Yu Cao, Wai‐Hong Tham
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10.1042/BJ20131344

Phosphorylation by Akt within the ST loop of AMPK-α1 down-regulates its activation in tumour cells
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Software Mentions: 1
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Structure and inhibitor specificity of the PCTAIRE-family kinase CDK16
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Author(s): Sarah E. Dixon-Clarke, Saifeldin N. Shehata, T. Krojer, Timothy D. Sharpe, Frank von Delft, Kei Sakamoto, Alex N. Bullock
Software Mentions: 1
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10.1042/BJ20121745

Exploring the structure and function of <i>Thermotoga maritima</i> CorA reveals the mechanism of gating and ion selectivity in Co2+/Mg2+ transport
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10.1042/BJ20150068

Diversity in the structures and ligand-binding sites of nematode fatty acid and retinol-binding proteins revealed by Na-FAR-1 from <i>Necator americanus</i>
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Software Mentions: 1
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10.1042/BCJ20160257

EssC: domain structures inform on the elusive translocation channel in the Type VII secretion system
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10.1042/BJ20131415

Structural and functional characterization of NanU, a novel high-affinity sialic acid-inducible binding protein of oral and gut-dwelling Bacteroidetes species
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10.1042/BCJ20200379

Mechanistic insights into Lhr helicase function in DNA repair
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Author(s): Ryan J. Buckley, Kevin Kramm, C.D.O. Cooper, Dina Grohmann, Edward L. Bolt
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10.1042/BJ20141569

An antibody raised against a pathogenic serpin variant induces mutant-like behaviour in the wild-type protein
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Author(s): James A. Irving, Elena Miranda, Imran Ul Haq, Juan Pérez, Vadim Kotov, Sarah V. Faull, Neda Motamedi-Shad, David A. Lomas
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10.1042/BJ20131650

Altered native stability is the dominant basis for susceptibility of α1-antitrypsin mutants to polymerization
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10.1042/BCJ20200423

An ATP-responsive metabolic cassette comprised of inositol tris/tetrakisphosphate kinase 1 (ITPK1) and inositol pentakisphosphate 2-kinase (IPK1) buffers diphosphosphoinositol phosphate levels
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10.1002/bmb.20991

An expanded framework for biomolecular visualization in the classroom: Learning goals and competencies
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10.1002/bmb.21218

A Research‐inspired biochemistry laboratory module–combining expression, purification, crystallization, structure‐solving, and characterization of a flavodoxin‐like protein
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10.21767/2471-8084.100051

Mechanistic Studies of 1-Deoxy-D-Xylulose-5-Phosphate Synthase from Deinococcus radiodurans
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Software Mentions: 1
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10.1016/j.bcp.2013.02.002

11β-Hydroxysteroid dehydrogenase type 1 contributes to the balance between 7-keto- and 7-hydroxy-oxysterols in vivo
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10.1016/j.bcp.2016.07.020

Structure-based identification and characterisation of structurally novel human P2X7 receptor antagonists
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Software Mentions: 1
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10.1155/2016/4360285

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Author(s): Teresa Milano, Sebastiana Angelaccio, Angela Tramonti, Martino L. di Salvo, Roberto Contestabile, Stefano Pascarella
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10.1155/2016/4101059

Geometric Simulation Approach for Grading and Assessing the Thermostability of CALBs
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10.1042/BST20160106

The importance of ribosome production, and the 5S RNP–MDM2 pathway, in health and disease
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10.1042/BST20180348

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Software Mentions: 1
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10.1042/BST20190563

Editor's cut: DNA cleavage by CRISPR RNA-guided nucleases Cas9 and Cas12a
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10.1021/acs.biochem.0c00910

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Software Mentions: 1
Published: over 5 years ago

10.1021/acs.biochem.0c00987

Solution and Membrane Interaction Dynamics of <i>Mycobacterium tuberculosis</i> Fatty Acyl-CoA Synthetase FadD13
Cited by: 1
Author(s): Camilla A.K. Lundgren, M. Lerche, Charlotta Norling, Martin Högbom
Software Mentions: 1
Published: about 5 years ago

10.1021/acs.biochem.0c00889

Polyanions Cause Protein Destabilization Similar to That in Live Cells
Cited by: 10
Author(s): Therese Sörensen, Sarah Leeb, Jens Danielsson, Mikael Oliveberg
Software Mentions: 1
Published: over 5 years ago

10.1016/j.bbamem.2016.12.012

Interfacial activation of M37 lipase: A multi-scale simulation study
Cited by: 21
Author(s): Nathalie Willems, Mickaël Lelimousin, Heidi Koldsø, Mark S. P. Sansom
Software Mentions: 1
Published: over 9 years ago

10.1016/j.bbamem.2018.01.017

Cardiolipin dynamics and binding to conserved residues in the mitochondrial ADP/ATP carrier
Cited by: 45
Author(s): Anna L. Duncan, Jonathan J. Ruprecht, Edmund R. S. Kunji, Alan J. Robinson
Software Mentions: 1
Published: about 8 years ago

10.1016/j.bbamem.2016.09.011

Control of human VDAC-2 scaffold dynamics by interfacial tryptophans is position specific
Cited by: 7
Author(s): Svetlana Rajkumar Maurya, Radhakrishnan Mahalakshmi
Software Mentions: 1
Published: over 9 years ago

10.1016/j.bbagen.2013.08.021

Chaperone-mediated native folding of a β-scorpion toxin in the periplasm of Escherichia coli
Cited by: 10
Author(s): Andrias O. O’Reilly, A.R. Cole, José Luiz de Souza Lopes, Angelika Lampert, B.A. Wallace
Software Mentions: 1
Published: over 12 years ago

10.1016/j.bbamem.2021.183601

An antibiotic-resistance conferring mutation in a neisserial porin: Structure, ion flux, and ampicillin binding
Cited by: 6
Author(s): Annika Bartsch, Callum M. Ives, Christof Kattner, Florian Pein, Manuel Diehn, Mikio Tanabe, Axel Munk, Ulrich Zachariae, Claudia Steinem, Salomé Llabrés
Software Mentions: 1
Published: about 5 years ago

10.1007/s10532-017-9786-9

Important amino acid residues of hexachlorocyclohexane dehydrochlorinases (LinA) for enantioselective transformation of hexachlorocyclohexane isomers.
Cited by: 8
Author(s): Nidhi Shrivastava, Ankit S. Macwan, Hans‐Peter E. Kohler, Ashwani Kumar
Software Mentions: 1
Published: about 9 years ago

10.1080/21655979.2020.1834726

Systems pharmacology in combination with proteomics reveals underlying mechanisms of Xihuang pill against triple-negative breast cancer
Cited by: 8
Author(s): Xingchao Xu, Jimei Zhang, Zhenhua Zhang, Meng Wang, Yaping Liu, Xiangqi Li
Software Mentions: 1
Published: over 6 years ago

10.1093/bioinformatics/btw071

SASpy: a PyMOL plugin for manipulation and refinement of hybrid models against small angle X-ray scattering data
Cited by: 30
Author(s): Alejandro Panjkovich, Dmitri I. Svergun
Software Mentions: 1
Published: over 10 years ago

10.1093/bioinformatics/btv616

IsoMIF Finder: online detection of binding site molecular interaction field similarities
Cited by: 18
Author(s): Matthieu Chartier, Etienne Adriansen, Rafaël Najmanovich
Software Mentions: 1
Published: over 10 years ago

10.1093/bioinformatics/btab094

Differentially conserved amino acid positions may reflect differences in SARS-CoV-2 and SARS-CoV behaviour
Cited by: 8
Author(s): Denisa Bojkova, Jake E McGreig, Katie-May McLaughlin, Stuart G Masterson, Magdalena Antczak, Marek Widera, Verena Krähling, Sandra Ciesek, Mark N. Wass, Martin Michaelis, Jindrich Cinatl
Software Mentions: 1
Published: over 5 years ago

10.1093/bioinformatics/btx345

Protein–Sol: a web tool for predicting protein solubility from sequence
Cited by: 334
Author(s): Max Hebditch, Manuel Alejandro Carballo-Amador, Spyros Charonis, Robin Curtis, Jim Warwicker
Software Mentions: 1
Published: about 9 years ago

10.1093/bioinformatics/btv458

NRGsuite: a PyMOL plugin to perform docking simulations in real time using FlexAID
Cited by: 52
Author(s): Francis Gaudreault, Louis‐Philippe Morency, Rafaël Najmanovich
Software Mentions: 1
Published: almost 11 years ago

10.1093/bioinformatics/btt326

GSATools: analysis of allosteric communication and functional local motions using a structural alphabet
Cited by: 44
Author(s): Alessandro Pandini, Arianna Fornili, Franca Fraternali, Jens Kleinjung
Software Mentions: 1
Published: about 13 years ago

10.1093/bioinformatics/bty968

BlendMol: advanced macromolecular visualization in Blender
Cited by: 28
Author(s): Jacob D. Durrant
Software Mentions: 1
Published: over 7 years ago

10.1093/bioinformatics/btaa677

Deuteros 2.0: peptide-level significance testing of data from hydrogen deuterium exchange mass spectrometry
Cited by: 53
Author(s): Andy M. Lau, Jürgen Claesen, Kjetil Hansen, Argyris Politis
Software Mentions: 1
Published: over 5 years ago

10.1093/bioinformatics/btaa104

Michela<scp>Ngl</scp>o: sculpting protein views on web pages without coding
Cited by: 19
Author(s): Matteo P. Ferla, Alistair T. Pagnamenta, David Damerell, Jenny C. Taylor, Brian D. Marsden
Software Mentions: 1
Published: over 6 years ago

10.1093/bioinformatics/bty834

Towards region-specific propagation of protein functions
Cited by: 6
Author(s): Da Chen Emily Koo, Richard Bonneau
Software Mentions: 1
Published: almost 8 years ago

10.1093/bioinformatics/bty818

PySFD: comprehensive molecular insights from significant feature differences detected among many simulated ensembles
Cited by: 3
Author(s): Sebastian Stolzenberg
Software Mentions: 1
Published: almost 8 years ago

10.1093/bioinformatics/btz062

Calculation of accurate interatomic contact surface areas for the quantitative analysis of non-bonded molecular interactions
Cited by: 46
Author(s): Judemir Ribeiro, Carlos Ríos-Vera, Francisco S. Melo, Andreas Schüller
Software Mentions: 1
Published: over 7 years ago

10.1093/bioinformatics/btv203

PDIviz: analysis and visualization of protein–DNA binding interfaces
Cited by: 15
Author(s): Judemir Ribeiro, Francisco S. Melo, Andreas Schüller
Software Mentions: 1
Published: over 11 years ago

10.1093/bioinformatics/btz739

Hexa-Longin domain scaffolds for inter-Rab signalling
Cited by: 5
Author(s): Luis Sánchez‐Pulido, Chris P. Ponting
Software Mentions: 1
Published: almost 7 years ago

10.1093/bioinformatics/btz022

Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry
Cited by: 61
Author(s): Andy M. Lau, Zainab Ahdash, Chloé Martens, Argyris Politis
Software Mentions: 1
Published: over 7 years ago

10.6026/97320630014511

Antibacterial Activity study of Musizin isolated from Rhamnus wightii Wight &amp; Arn.
Cited by: 2
Author(s): Tharsius Raja William Raja, Antony Stalin, Pachaiyappan Saravana Kumar, Jackson Amalraj, Poorva Narasimhan, Balakrishna Keduki, Veeramuthu Duraipandiyan, P. Palani, S. Ignacimuthu
Software Mentions: 1
Published: over 7 years ago

10.6026/97320630016183

Molecular modeling and docking analysis of aspirin with pde7b
Cited by: 3
Author(s): Arthi Balasundaram, Darling Chellathai David
Software Mentions: 1
Published: over 6 years ago