10.1371/journal.pone.0162790

The Effect of Tethers on Artificial Cell Membranes: A Coarse-Grained Molecular Dynamics Study
Cited by: 11
Author(s): William Hoiles, R. N. Gupta, Bruce Cornell, Charles G. Cranfield, Vikram Krishnamurthy
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0167932

Bg10: A Novel Metagenomics Alcohol-Tolerant and Glucose-Stimulated GH1 ß-Glucosidase Suitable for Lactose-Free Milk Preparation
Cited by: 16
Author(s): Elisângela Soares Gomes-Pepe, Elwi Guillermo Machado Sierra, Mariana Rangel Pereira, Tereza Cristina Luque Castellane, Eliana Gertrudes de Macedo Lemos
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0082458

Structural Insights into RbmA, a Biofilm Scaffolding Protein of V. Cholerae
Cited by: 33
Author(s): M. Maestre-Reyna, Wen‐Jin Wu, Andrew H.J. Wang
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0134640

The Imidazoquinoline Toll-Like Receptor-7/8 Agonist Hybrid-2 Potently Induces Cytokine Production by Human Newborn and Adult Leukocytes
Cited by: 42
Author(s): Lakshmi Ganapathi, Simon D. van Haren, David J. Dowling, Ilana Bergelson, Nikunj M. Shukla, Subbalakshmi S. Malladi, Rajalakshmi Balakrishna, Hiromi Tanji, Umeharu Ohto, Toshiyuki Shimizu, Sunil A. David, Ofer Levy
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0033709

Computable Features Required to Evaluate the Efficacy of Drugs and a Universal Algorithm to Find Optimally Effective Drug in a Drug Complex
Cited by: 2
Author(s): Kui Wang, Wei Cui, Gang Hu, Jianzhao Gao, Zhonghua Wu, Xingye Qiu, Jishou Ruan, Yi Feng, Zhi Qi, Yiming Shao, Jack A. Tuszyński
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0032212

Single Cycle Structure-Based Humanization of an Anti-Nerve Growth Factor Therapeutic Antibody
Cited by: 9
Author(s): Sonia Covaceuszach, Sara Marinelli, I. Krastanova, Gabriele Ugolini, Flaminia Pavone, Doriano Lamba, Antonino Cattaneo
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0045437

Solution Structure of MSL2 CXC Domain Reveals an Unusual Zn3Cys9 Cluster and Similarity to Pre-SET Domains of Histone Lysine Methyltransferases
Cited by: 18
Author(s): Sanduo Zheng, Jia Wang, Yingang Feng, Jinfeng Wang, Keqiong Ye
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0104790

PMCA4 (ATP2B4) Mutation in Familial Spastic Paraplegia
Cited by: 28
Author(s): Miaoxin Li, Philip Wing Lok Ho, Shirley Yin Yu Pang, Zero Ho Man Tse, Michelle Kung, Pak C. Sham, Shu Leong Ho
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0090557

NMR Characterization of the Near Native and Unfolded States of the PTB Domain of Dok1: Alternate Conformations and Residual Clusters
Cited by: 6
Author(s): Sebanti Gupta, Surajit Bhattacharjya
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0070358

Crystal Structure of Pim1 Kinase in Complex with a Pyrido[4,3-D]Pyrimidine Derivative Suggests a Unique Binding Mode
Cited by: 8
Author(s): Sang Jae Lee, Byeong-Gu Han, Jea-Won Cho, Jang‐Sik Choi, Jaekyoo Lee, Ho-Juhn Song, Jai‐Kyoung Koh, Byung Il Lee
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0019253

Critical Factors Governing the Difference in Antizyme-Binding Affinities between Human Ornithine Decarboxylase and Antizyme Inhibitor
Cited by: 19
Author(s): Yen Chin Liu, Yiliang Liu, Jia-Yang Su, Guang‐Yaw Liu, Hui‐Chih Hung
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0057804

Hydrogen Bond Strengths in Phosphorylated and Sulfated Amino Acid Residues
Cited by: 23
Author(s): Chaya S. Rapp, Hadassa Klerman, Emily J. Levine, Christopher L. McClendon
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0157286

Molecular Dynamics Simulations and Structural Analysis to Decipher Functional Impact of a Twenty Residue Insert in the Ternary Complex of Mus musculus TdT Isoform
Cited by: 9
Author(s): Eshita Mutt, Ramanathan Sowdhamini
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0181091

Evolution of the cAMP-dependent protein kinase (PKA) catalytic subunit isoforms
Cited by: 38
Author(s): Kristoffer Søberg, Line Victoria Moen, Bjørn Steen Skålhegg, Jon K. Laerdahl
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0039252

Prediction of Metal Ion–Binding Sites in Proteins Using the Fragment Transformation Method
Cited by: 91
Author(s): Chih-Hao Lu, Yu‐Feng Lin, Jau-Ji Lin, Chao Yu
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0055478

A Compensatory Mutation Provides Resistance to Disparate HIV Fusion Inhibitor Peptides and Enhances Membrane Fusion
Cited by: 11
Author(s): Matthew P. Wood, Amy L. Cole, Piotr Ruchala, Alan J. Waring, Lisa C. Rohan, Preston A. Marx, Patrick M. Tarwater, Phalguni Gupta, Alexander M. Cole
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0107309

Structural Insights into the Recognition of Phosphopeptide by the FHA Domain of Kanadaptin
Cited by: 5
Author(s): Qingping Xu, Marc C. Deller, T.K. Nielsen, Joanna C Grant, Scott A. Lesley, Marc‐André Elsliger, Ashley M. Deacon, Ian A. Wilson
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0050028

PEGylation Extends Circulation Half-Life While Preserving In Vitro and In Vivo Activity of Tissue Inhibitor of Metalloproteinases-1 (TIMP-1)
Cited by: 37
Author(s): Jyotica Batra, James C. Robinson, Christine Mehner, Alexandra Hockla, Erin Miller, Derek C. Radisky, Evette S. Radisky
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0240345

Large scale genomic analysis of 3067 SARS-CoV-2 genomes reveals a clonal geo-distribution and a rich genetic variations of hotspots mutations
Cited by: 58
Author(s): Meriem Laamarti, Tarek Alouane, Souad Kartti, Mohammed Walid Chemao-Elfihri, Mohammed Hakmi, Abdelomunim Essabbar, Mohamed Laamarti, Haitam Hlali, Houda Bendani, Nassma Boumajdi, Oussama Benhrif, Loubna Allam, Naïma El Hafidi, Rachid El Jaoudi, Imane Allali, Nabila Marchoudi, Jamal Fekkak, Houda Benrahma, Chakib Nejjari, Saaïd Amzazi, Lahcen Belyamani, Azeddine Ibrahimi
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0016228

Laboratory-Evolved Mutants of an Exogenous Global Regulator, IrrE from Deinococcus radiodurans, Enhance Stress Tolerances of Escherichia coli
Cited by: 63
Author(s): Tingjian Chen, Jianqing Wang, Rong Yang, Jicong Li, Min Lin, Zhanglin Lin
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0074574

Modeling the Conformational Changes Underlying Channel Opening in CFTR
Cited by: 45
Author(s): Kazi Shefaet Rahman, Guiying Cui, Stephen C. Harvey, Nael A. McCarty
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0114580

Chemical Display of Pyrimidine Bases Flipped Out by Modification-Dependent Restriction Endonucleases of MspJI and PvuRts1I Families
Cited by: 6
Author(s): Evelina Zagorskaitė, Giedrius Sasnauskas
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0095989

Comparative Structural Modeling of Six Old Yellow Enzymes (OYEs) from the Necrotrophic Fungus Ascochyta rabiei : Insight into Novel OYE Classes with Differences in Cofactor Binding, Organization of Active Site Residues and Stereopreferences
Cited by: 19
Author(s): Shadab Nizam, Rajesh Kumar Gazara, Sandhya Verma, K. B. Singh, Praveen Kumar Verma
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0022163

Proton Pump Inhibitors Inhibit Metformin Uptake by Organic Cation Transporters (OCTs)
Cited by: 142
Author(s): Anne T. Nies, Ute Hofmann, Claudia Resch, Elke Schaeffeler, Maria Rius, Matthias Schwab
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0052802

Oryza sativa COI Homologues Restore Jasmonate Signal Transduction in Arabidopsis coi1-1 Mutants
Cited by: 67
Author(s): Han Yong Lee, Ju-Seok Seo, Jang Hee Cho, Harin Jung, Ju-Kon Kim, Jong Seob Lee, Sangkee Rhee, Yang Do Choi
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0011515

Rationalisation of the Differences between APOBEC3G Structures from Crystallography and NMR Studies by Molecular Dynamics Simulations
Cited by: 17
Author(s): Flavia Autore, Julien R. C. Bergeron, Michael H. Malim, Franca Fraternali, Hendrik Huthoff
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0036212

Proteome-Wide Analysis of Single-Nucleotide Variations in the N-Glycosylation Sequon of Human Genes
Cited by: 32
Author(s): Raja Mazumder, Krishna S. Morampudi, Mona Motwani, Sona Vasudevan, Radoslav Goldman
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0083586

Efficicent (R)-Phenylethanol Production with Enantioselectivity-Alerted (S)-Carbonyl Reductase II and NADPH Regeneration
Cited by: 14
Author(s): Rongzhen Zhang, Botao Zhang, Yan Xu, Yaohui Li, Ming Li, Hongbo Liang, Rong Xiao
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0075272

Differential Active Site Loop Conformations Mediate Promiscuous Activities in the Lactonase SsoPox
Cited by: 82
Author(s): Julien Hiblot, Guillaume Gotthard, Mikael Elias, Éric Chabrière
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0154619

Independent Evolution of Six Families of Halogenating Enzymes
Cited by: 15
Author(s): Gang‐Ming Xu, Bin‐Gui Wang
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0010064

Metal-Free ALS Variants of Dimeric Human Cu,Zn-Superoxide Dismutase Have Enhanced Populations of Monomeric Species
Cited by: 48
Author(s): Anna-Karin E. Svensson, Osman Bilsel, Can Kayatekin, Jessica A. Adefusika, Jill A. Zitzewitz, C. Robert Matthews
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0009568

Identifying Unexpected Therapeutic Targets via Chemical-Protein Interactome
Cited by: 46
Author(s): Lun Yang, Jian Chen, Leming Shi, Michael P. Hudock, Kejian Wang, Lin He
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0067465

Structural Studies of a Bacterial tRNAHIS Guanylyltransferase (Thg1)-Like Protein, with Nucleotide in the Activation and Nucleotidyl Transfer Sites
Cited by: 15
Author(s): Samantha J. Hyde, Bhalchandra S. Rao, B.E. Eckenroth, Jane E. Jackman, Sylvie Doublié
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0114793

Purification, Cloning, Characterization, and N-Glycosylation Analysis of a Novel β-Fructosidase from Aspergillus oryzae FS4 Synthesizing Levan- and Neolevan-Type Fructooligosaccharides
Cited by: 13
Author(s): Lixin Xu, Dongxue Wang, Lili Lu, Lan Jin, Jiawei Liu, Deyong Song, Zhongwu Guo, Min Xiao
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0174410

In silico design of the first DNA-independent mechanism-based inhibitor of mammalian DNA methyltransferase Dnmt1
Cited by: 21
Author(s): Vedran Miletić, Ivica Odorčić, Patrik Nikolić, Željko M. Svedružić
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0202989

Next generation sequencing reveals a novel nonsense mutation in MSX1 gene related to oligodontia
Cited by: 17
Author(s): Ondřej Bonczek, Peter Bielik, Přemysl Krejčí, Tomáš Zeman, Lydie IzakovičováHollá, Jana Šoukalová, Jiřı́ Vaněk, Tereza Gerguri, Vladimír J. Balcar, Omar Šerý
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0019411

Structural Basis for Variant-Specific Neuroligin-Binding by α-Neurexin
Cited by: 17
Author(s): Hiroki Tanaka, Terukazu Nogi, Norio Yasui, Katsunori Iwasaki, Junichi Takagi
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0134418

Translation Elongation Factor Tuf of Acinetobacter baumannii Is a Plasminogen-Binding Protein
Cited by: 28
Author(s): Arno Koenigs, Peter F. Zipfel, Peter Kraiczy
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0066936

Substrate Channel Flexibility in Pseudomonas aeruginosa MurB Accommodates Two Distinct Substrates
Cited by: 5
Author(s): Ming Wei Chen, Bernhard Lohkamp, R. Schnell, Julien Lescar, Günter Schneider
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0119967

Polymorphisms of Chicken TLR3 and 7 in Different Breeds
Cited by: 16
Author(s): Wenke Ruan, An Jian, Yongfeng Wu
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0136969

Flexible Structure of Peptide-Bound Filamin A Mechanosensor Domain Pair 20–21
Cited by: 13
Author(s): Jonne Seppälä, Helena Tossavainen, Nebojša Rodić, Perttu Permi, Ulla Pentikäinen, Jari Ylänne
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0143963

Isolation, N-glycosylations and Function of a Hyaluronidase-Like Enzyme from the Venom of the Spider Cupiennius salei
Cited by: 23
Author(s): Olivier Biner, Christian Trachsel, Aline Moser, Lukas S. Kopp, Nicolas Langenegger, Urs Kämpfer, Christoph von Ballmoos, Wolfgang Nentwig, Stefan Schürch, Johann Schaller, Lucia Kuhn‐Nentwig
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0098365

Structural and Mutagenic Analysis of the RM Controller Protein C.Esp1396I
Cited by: 2
Author(s): Richard N. A. Martin, J.E. McGeehan, Geoff Kneale
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0087125

NMR Spectroscopic and Bioinformatic Analyses of the LTBP1 C-Terminus Reveal a Highly Dynamic Domain Organisation
Cited by: 9
Author(s): I. M. Robertson, Penny A. Handford, Christina Redfield
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0238969

Correction: Phage Display of the Serpin Alpha-1 Proteinase Inhibitor Randomized at Consecutive Residues in the Reactive Centre Loop and Biopanned with or without Thrombin
Cited by: 0
Author(s): Benjamin M. T. Scott, Wadim L. Matochko, Richard F. Gierczak, Varsha Bhakta, Ratmir Derda, William P. Sheffield
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0082024

In Silico, In Vitro and In Vivo Analysis of Binding Affinity between N and C-Domains of Clostridium perfringens Alpha Toxin
Cited by: 22
Author(s): Siva R. Uppalapati, Joseph J. Kingston, Insaf Ahmed Qureshi, H. S. Murali, Harsh Vardhan Batra
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0079590

Crystal Structure of the Pleckstrin Homology Domain from the Ceramide Transfer Protein: Implications for Conformational Change upon Ligand Binding
Cited by: 21
Author(s): Jennifer Prashek, Trung Truong, Xiaolan Yao
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0039652

HCV Genotypes Are Differently Prone to the Development of Resistance to Linear and Macrocyclic Protease Inhibitors
Cited by: 78
Author(s): Valeria Cento, Carmen Mirabelli, Romina Salpini, Salvatore Dimonte, Anna Artese, Giosuè Costa, Fabio Mercurio, Valentina Svicher, Lucia Parrotta, Ada Bertoli, Marco Ciotti, D. Di Paolo, C. Sarrecchia, Massimo Andreoni, Stefano Alcaro, M. Angélico, Carlo Federico Perno, Francesca Ceccherini‐Silberstein
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0097633

A Conserved Motif in the Linker Domain of STAT1 Transcription Factor Is Required for Both Recognition and Release from High-Affinity DNA-Binding Sites
Cited by: 9
Author(s): Bettina Hüntelmann, Julia Staab, Christoph Herrmann‐Lingen, Thomas Meyer
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0080197

Molecular Modeling Reveals the Novel Inhibition Mechanism and Binding Mode of Three Natural Compounds to Staphylococcal α-Hemolysin
Cited by: 38
Author(s): Jiazhang Qiu, Dacheng Wang, Yu Zhang, Jing Dong, Jianfeng Wang, Xiaodi Niu
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0060498

Engineering Agatoxin, a Cystine-Knot Peptide from Spider Venom, as a Molecular Probe for In Vivo Tumor Imaging
Cited by: 43
Author(s): Sarah Moore, Cheuk Lun Leung, Heidi K. Norton, Jennifer R. Cochran
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0012597

Molecular Modeling Study for Interaction between Bacillus subtilis Obg and Nucleotides
Cited by: 8
Author(s): Yuno Lee, Woo Young Bang, Songmi Kim, Prettina Lazar, Chul Wook Kim, Jeong Dong Bahk, Keun Woo Lee
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0153337

Characterization of the FtsZ C-Terminal Variable (CTV) Region in Z-Ring Assembly and Interaction with the Z-Ring Stabilizer ZapD in E. coli Cytokinesis
Cited by: 11
Author(s): Kai-Feng Huang, Aaron Mychack, Lukasz Tchorzewski, Anuradha Janakiraman
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0032217

Structural Characterisation of Tpx from Yersinia pseudotuberculosis Reveals Insights into the Binding of Salicylidene Acylhydrazide Compounds
Cited by: 17
Author(s): Mads Gabrielsen, Katherine S. H. Beckham, Victoria A. Feher, Caroline E. Zetterström, Dai Wang, Sylke Müller, Mikael Elofsson, Rommie E. Amaro, Olwyn Byron, Andrew J. Roe
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0008553

Predicting the Antigenic Structure of the Pandemic (H1N1) 2009 Influenza Virus Hemagglutinin
Cited by: 147
Author(s): Manabu Igarashi, Kimihito Ito, Reiko Yoshida, Daisuke Tomabechi, Hiroshi Kida, Ayato Takada
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0021608

Functional Expression of Spider Neurotoxic Peptide Huwentoxin-I in E. coli
Cited by: 20
Author(s): Er Meng, Tianfu Cai, Wenying Li, Hui Zhang, Yanbo Liu, Kuan Peng, Songping Liang, Dongyi Zhang
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0104520

The Impact of Nitration on the Structure and Immunogenicity of the Major Birch Pollen Allergen Bet v 1.0101
Cited by: 62
Author(s): Chloé Ackaert, S. Kofler, Jutta Horejs‐Hoeck, Nora Zulehner, Claudia Asam, Susanne von Grafenstein, Julian E. Fuchs, Peter Briza, Klaus R. Liedl, Barbara Bohle, Fátima Ferreira, Hans Brandstetter, Gertie Janneke Oostingh, Albert Duschl
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0032392

A Novel Serpin with Antithrombin-Like Activity in Branchiostoma japonicum: Implications for the Presence of a Primitive Coagulation System
Cited by: 7
Author(s): Yeqing Chao, Chunxin Fan, Yujun Liang, Bei Gao, Shicui Zhang
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0036960

Enzymatic Activities and DNA Substrate Specificity of Mycobacterium tuberculosis DNA Helicase XPB
Cited by: 20
Author(s): Seetha V. Balasingham, Ephrem Debebe Zegeye, Håvard Homberset, Marie L. Rossi, Jon K. Laerdahl, Vilhelm A. Bohr, Tone Tønjum
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0250902

Biochemical evidence of epicuticular wax compounds involved in cotton-whitefly interaction
Cited by: 4
Author(s): Muhammad Ali, Muhammad Azmat Ullah Khan, Abdul Qayyum Rao, Atia Iqbal, Salah Ud Din, Ahmad Ali Shahid
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0206955

Characterisation of a type II functionally-deficient variant of alpha-1-antitrypsin discovered in the general population
Cited by: 9
Author(s): Mattia Laffranchi, Emma Elliston, Fabrizio Gangemi, Romina Berardelli, David A. Lomas, James A. Irving, Annamaria Fra
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0034529

Characterization of Multi-Functional Properties and Conformational Analysis of MutS2 from Thermotoga maritima MSB8
Cited by: 5
Author(s): Eui-Young Jeong, Hang-Hyun Jo, Tae Kyun Kim, Changill Ban
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0052790

Piperidinols That Show Anti-Tubercular Activity as Inhibitors of Arylamine N-Acetyltransferase: An Essential Enzyme for Mycobacterial Survival Inside Macrophages
Cited by: 24
Author(s): Areej Abuhammad, Elizabeth Fullam, E.D. Lowe, David Staunton, Akane Kawamura, Isaac M. Westwood, Sanjib Bhakta, A. Christopher Garner, David Wilson, Peter Seden, Stephen G. Davies, Angela J. Russell, Elspeth F. Garman, Edith Sim
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0040307

Characteristic Features of Kynurenine Aminotransferase Allosterically Regulated by (Alpha)-Ketoglutarate in Cooperation with Kynurenine
Cited by: 9
Author(s): Ken Okada, Clement Angkawidjaja, Yuichi Koga, Kazufumi Takano, Shigenori Kanaya
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0074425

Development of Novel Rifampicin-Derived P-Glycoprotein Activators/Inducers. Synthesis, In Silico Analysis and Application in the RBE4 Cell Model, Using Paraquat as Substrate
Cited by: 20
Author(s): Vânia Vilas-Boas, Renata Silva, Andreia Palmeira, Emı́lia Sousa, Luı́sa M. Ferreira, Paula S. Branco, Félix Carvalho, Maria de Lourdes Bastos, Fernando Remião
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0067244

Active-State Models of Ternary GPCR Complexes: Determinants of Selective Receptor-G-Protein Coupling
Cited by: 39
Author(s): Ralf C. Kling, Harald Lanig, Timothy Clark, Peter Gmeiner
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0026727

Context Mediates Antimicrobial Efficacy of Kinocidin Congener Peptide RP-1
Cited by: 16
Author(s): Nannette Y. Yount, Sidney Cohen, Deborah Kupferwasser, Alan J. Waring, Piotr Ruchala, Sanjai Sharma, Karlman Wasserman, Chun‐Ling Jung, Michael R. Yeaman
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0081074

Dissection of the TssB-TssC Interface during Type VI Secretion Sheath Complex Formation
Cited by: 19
Author(s): Xiang Y. Zhang, Yannick R. Brunet, Laureen Logger, Badreddine Douzi, Christian Cambillau, Laure Journet, Éric Cascales
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0119207

Protein-Binding RNA Aptamers Affect Molecular Interactions Distantly from Their Binding Sites
Cited by: 19
Author(s): Daniel M. Dupont, Cathrine K. Thuesen, Kenneth A. Bøtkjær, Manja A. Behrens, Karen Dam, H. Sørensen, Jan Skov Pedersen, Michael Ploug, Jan K. Jensen, Peter A. Andreasen
Software Mentions: 1
Published: over 11 years ago

10.1016/j.chom.2020.03.024

VSV-Displayed HIV-1 Envelope Identifies Broadly Neutralizing Antibodies Class-Switched to IgG and IgA
Cited by: 22
Author(s): Manxue Jia, Rachel A. Liberatore, Yicheng Guo, Kuei-Chuan Chan, Ruimin Pan, Hong Liang, Eric Waltari, Eva Mittler, Kartik Chandran, Pradeep D. Uchil, Daniel E. Kaufmann, Michael S. Seaman, David D. Ho, Lawrence Shapiro, Zizhang Sheng, Xiang‐Peng Kong, Paul D. Bieniasz, Xueling Wu
Software Mentions: 1
Published: about 6 years ago

10.1016/j.chom.2019.09.016

Structural Basis for Broad HIV-1 Neutralization by the MPER-Specific Human Broadly Neutralizing Antibody LN01
Cited by: 51
Author(s): Dora Pinto, Craig Fenwick, Christophe Caillat, Chiara Silacci, Serafima Guseva, François Dehez, Christophe Chipot, Sonia Barbieri, Andrea Minola, David Jarrossay, Georgia D. Tomaras, Xiaoying Shen, Agostino Riva, Maciej Tarkowski, Olivier Schwartz, Timothée Bruel, Jérémy Dufloo, Michael S. Seaman, David C. Montefiori, Antonio Lanzavecchia, Davide Corti, Giuseppe Pantaleo, Winfríed Weissenhorn
Software Mentions: 1
Published: over 6 years ago

10.22074/cellj.2021.6903

Enhancement of The Stability of Human Growth Hormone by Using Tris(hydroxymethyl)aminomethane: Molecular Docking and Experimental Analysis.
Cited by: 0
Author(s): Siyavash Mirzaei, Hamid Mobedi, Hamid Gourabi, Mohammad Hosein Sanati, Sakine Khezli, Masoume Ighaeie, Hossein Omidian
Software Mentions: 1
Published: over 5 years ago

10.1016/j.cmet.2011.09.009

ADP Regulates SNF1, the Saccharomyces cerevisiae Homolog of AMP-Activated Protein Kinase
Cited by: 146
Author(s): Faith V. Mayer, Richard B. Heath, E. Underwood, Matthew J. Sanders, David Carmena, Rhonda R. McCartney, Fiona C. Leiper, Bing Xiao, Chun Jing, P.A. Walker, L.F. Haire, R.W. Ogrodowicz, Stephen R. Martin, Martin C. Schmidt, S.J. Gamblin, David Carling
Software Mentions: 1
Published: over 14 years ago

10.1038/s41423-021-00701-z

Dysregulated immunity in PID patients with low GARP expression on Tregs due to mutations in LRRC32
Cited by: 10
Author(s): Peter Lehmkuhl, Magdalena Gentz, Andres Caballero Garcia de Otezya, Bodo Grimbacher, Hendrik Schulze‐Koops, Alla Skapenko
Software Mentions: 1
Published: about 5 years ago

10.1038/s41423-020-0458-z

Key residues of the receptor binding motif in the spike protein of SARS-CoV-2 that interact with ACE2 and neutralizing antibodies
Cited by: 379
Author(s): Chunyan Yi, Xiaoyu Sun, Jing Ye, Longfei Ding, Meiqin Liu, Zhuo Yang, Xiao Lü, Yaguang Zhang, Liyang Ma, Wangpeng Gu, Aidong Qu, Jianqing Xu, Shi Z, Zhiyang Ling, Bing Sun
Software Mentions: 1
Published: about 6 years ago

10.1007/s00018-019-03347-3

Targeting intrinsically disordered proteins involved in cancer
Cited by: 66
Author(s): Patricia Santofimia‐Castaño, Bruno Rizzuti, Yi Xia, Olga Abián, Ling Peng, Adrián Velázquez‐Campoy, José L. Neira, Juan Iovanna
Software Mentions: 1
Published: over 6 years ago

10.1007/s00018-015-1917-z

Atg1 family kinases in autophagy initiation
Cited by: 97
Author(s): Nobuo N. Noda, Yūko Fujioka
Software Mentions: 1
Published: about 11 years ago

10.1007/s00018-014-1643-y

Turning points in the evolution of peroxidase–catalase superfamily: molecular phylogeny of hybrid heme peroxidases
Cited by: 57
Author(s): Marcel Zámocký, Bernhard Gasselhuber, Paul G. Furtmüller, Christian Obinger
Software Mentions: 1
Published: about 12 years ago

10.1007/s00018-020-03525-8

What turns CREB on? And off? And why does it matter?
Cited by: 77
Author(s): André Steven, Michael W. Friedrich, Paul Jank, Nadine Heimer, Jan Budczies, Carsten Denkert, Barbara Seliger
Software Mentions: 1
Published: about 6 years ago

10.1007/s00018-016-2131-3

The function of the two-pore channel TPC1 depends on dimerization of its carboxy-terminal helix
Cited by: 27
Author(s): Nina Larisch, Sonja A. Kirsch, Alexandra Schambony, Tanja Studtrucker, Rainer A. Böckmann, Petra Dietrich
Software Mentions: 1
Published: over 10 years ago

10.1007/s00018-018-2870-4

eIF2A, an initiator tRNA carrier refractory to eIF2α kinases, functions synergistically with eIF5B
Cited by: 28
Author(s): Eunah Kim, Joon Hyun Kim, Keunhee Seo, Ka Young Hong, Seon Woo A. An, Jun-Young Kwon, Seung-Jae Lee, Sung Key Jang
Software Mentions: 1
Published: about 8 years ago

10.1007/s00018-017-2677-8

Resculpting the binding pocket of APC superfamily LeuT-fold amino acid transporters
Cited by: 15
Author(s): Noel Edwards, Catriona M.H. Anderson, Nichola J Conlon, Andrew K. Watson, Richard S. Hall, Timothy R. Cheek, T. Martin Embley, David T. Thwaites
Software Mentions: 1
Published: over 8 years ago

10.1007/s00018-013-1258-8

Vaspin inhibits kallikrein 7 by serpin mechanism
Cited by: 113
Author(s): John T. Heiker, Nora Klöting, Peter Kovacs, E.B. Kuettner, Norbert Sträter, Stephan Schultz, Matthias Kern, Michael Stümvoll, Matthias Blüher, Annette G. Beck‐Sickinger
Software Mentions: 1
Published: over 13 years ago

10.1007/s00018-019-03065-w

Ciliary and cytoskeletal functions of an ancient monooxygenase essential for bioactive amidated peptide synthesis
Cited by: 16
Author(s): Dhivya Kumar, Richard E. Mains, Betty A. Eipper, Stephen M. King
Software Mentions: 1
Published: over 7 years ago

10.1007/s00018-020-03651-3

The transport pathway in the ABCG2 protein and its regulation revealed by molecular dynamics simulations
Cited by: 13
Author(s): Tibor Nagy, Ágota Tóth, Ágnes Telbisz, Balázs Sarkadi, Hedvig Tordai, Attila Tordai, Tamás Hegedűs
Software Mentions: 1
Published: almost 6 years ago

10.1111/cpr.12949

Network pharmacology and molecular docking analyses on Lianhua Qingwen capsule indicate Akt1 is a potential target to treat and prevent COVID‐19
Cited by: 132
Author(s): Qi‐Dong Xia, Xiufen Yang, Junlin Lu, Yuchao Lu, Yuanyuan Yang, Peng Zhou, Jia Hu, Cong Liu, Shaogang Wang
Software Mentions: 1
Published: over 5 years ago

10.1111/cpr.12732

Gamabufotalin induces a negative feedback loop connecting ATP1A3 expression and the AQP4 pathway to promote temozolomide sensitivity in glioblastoma cells by targeting the amino acid Thr794
Cited by: 8
Author(s): Yu‐Long Lan, Cheng Chen, Xun Wang, Jiacheng Lou, Jinyan Xing, Shuang Zou, Jiliang Hu, Wen Lyu, Bo Zhang
Software Mentions: 1
Published: over 6 years ago

10.1016/j.celrep.2018.11.080

A Wars2 Mutant Mouse Model Displays OXPHOS Deficiencies and Activation of Tissue-Specific Stress Response Pathways
Cited by: 33
Author(s): Thomas Agnew, Michelle Goldsworthy, Carlos Aguilar, Anna Morgan, Michelle Simon, Helen Hilton, Chris Esapa, Yixing Wu, Heather Cater, Liz Bentley, Cheryl L. Scudamore, Joanna Poulton, Karl Morten, Kyle Thompson, Langping He, Steve Brown, Robert W. Taylor, Michael R. Bowl, Roger D. Cox
Software Mentions: 1
Published: over 7 years ago

10.1016/j.celrep.2017.07.077

Improving the Immunogenicity of Native-like HIV-1 Envelope Trimers by Hyperstabilization
Cited by: 143
Author(s): Alba Torrents de la Peña, Jean-Philippe Julien, Steven W. de Taeye, Fernando Garcés, Miklós Guttman, Gabriel Ozorowski, Laura K. Pritchard, Anna‐Janina Behrens, Eden P. Go, Judith A. Burger, Edith E. Schermer, Kwinten Sliepen, Thomas J. Ketas, Pavel Pugach, Anila Yasmeen, Christopher A. Cottrell, Jonathan L. Torres, Charlotte D. Vavourakis, Marit J. van Gils, Celia C. LaBranche, David C. Montefiori, Heather Desaire, Max Crispin, Per Johan Klasse, Kelly K. Lee, John P. Moore, Andrew B. Ward, Ian A. Wilson, Rogier W. Sanders
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.celrep.2021.108929

Molecular mechanisms of APC/C release from spindle assembly checkpoint inhibition by APC/C SUMOylation
Cited by: 11
Author(s): Stanislau Yatskevich, Jessie S Kroonen, Claudio Alfieri, Thomas Tischer, Anna C. Howes, Linda Clijsters, Jing Yang, Ziguo Zhang, Kaige Yan, Alfred C.O. Vertegaal, David Barford
Software Mentions: 1
Published: over 5 years ago

10.1016/j.celrep.2019.09.074

Distinct Polymorphisms in HLA Class I Molecules Govern Their Susceptibility to Peptide Editing by TAPBPR
Cited by: 39
Author(s): F. Tudor Ilca, Linnea Drexhage, Gemma Brewin, Sarah Peacock, Louise H. Boyle
Software Mentions: 1
Published: over 6 years ago

10.1016/j.celrep.2018.10.006

Genetic Variation between Dengue Virus Type 4 Strains Impacts Human Antibody Binding and Neutralization
Cited by: 50
Author(s): Emily N. Gallichotte, Thomas J. Baric, Usha K. Nivarthi, Matthew J. Delacruz, Rachel L. Graham, Douglas G. Widman, Boyd Yount, Anna P. Durbin, Stephen S. Whitehead, Aravinda M. de Silva, Ralph S. Baric
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.celrep.2021.109487

Ketogenesis impact on liver metabolism revealed by proteomics of lysine β-hydroxybutyrylation
Cited by: 44
Author(s): Kevin B. Koronowski, Carolina Greco, He Huang, Jin-Kwang Kim, Jennifer L. Fribourgh, Priya Crosby, Lavina Mathur, Xuelian Ren, Carrie L. Partch, Cholsoon Jang, Feng Qiao, Yingming Zhao
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.celrep.2020.107909

Structural Insights into the SPRED1-Neurofibromin-KRAS Complex and Disruption of SPRED1-Neurofibromin Interaction by Oncogenic EGFR
Cited by: 39
Author(s): Wang Yan, Evan Markegard, Srisathiyanarayanan Dharmaiah, Thea D. Tlsty, Matthew Drew, Dominic Esposito, Klaus Scheffzek, Dwight V. Nissley, Frank McCormick, Dhirendra K. Simanshu
Software Mentions: 1
Published: about 6 years ago

10.1038/s41422-020-00442-0

A unique hormonal recognition feature of the human glucagon-like peptide-2 receptor
Cited by: 49
Author(s): Wen Sun, Li-Nan Chen, Qingtong Zhou, Lihua Zhao, Dehua Yang, Huibing Zhang, Zhaotong Cong, Dandan Shen, Fuqiang Zhao, Fulai Zhou, Xiaoqing Cai, Yan Chen, Yan Zhou, Sarina Gadgaard, Wijnand J C van der Velden, Suwen Zhao, Yi Jiang, Mette M. Rosenkilde, Hao Xu, Yan Zhang, Mingwei Wang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41422-020-0313-x

Structural basis for gating mechanism of Pannexin 1 channel
Cited by: 42
Author(s): Luqiu Mou, Meng Ke, Mengxiao Song, Yuanyue Shan, Qicai Xiao, Qingting Liu, Jialu Li, Ke Sun, Pu Liao, Li Guo, Jia Geng, Jianping Wu, Dong Deng
Software Mentions: 1
Published: over 6 years ago

10.1016/j.cellsig.2015.02.009

The cAMP sensors, EPAC1 and EPAC2, display distinct subcellular distributions despite sharing a common nuclear pore localisation signal
Cited by: 32
Author(s): Euan Parnell, Brian O. Smith, Stephen J. Yarwood
Software Mentions: 1
Published: about 11 years ago

10.15698/cst2017.10.104

VDAC1 at the crossroads of cell metabolism, apoptosis and cell stress
Cited by: 92
Author(s): Varda Shoshan‐Barmatz, Eduardo N. Maldonado, Yakov Krelin
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.tcsw.2019.100026

The interaction with fungal cell wall polysaccharides determines the salt tolerance of antifungal plant defensins
Cited by: 7
Author(s): Mark R. Bleackley, Charlotte S. Dawson, Jennifer A. E. Payne, Peta J. Harvey, K. Johan Rosengren, Pedro Quimbar, Donovan Garcia‐Ceron, Russell Lowe, Vincent Bulone, Nicole L. van der Weerden, David J. Craik, Marilyn A. Anderson
Software Mentions: 1
Published: over 6 years ago

10.3390/cells9020401

Probing Carbon Utilization of Cordyceps militaris by Sugar Transportome and Protein Structural Analysis
Cited by: 10
Author(s): Kanokwadee Sirithep, Fei Xiao, Nachon Raethong, Yuhan Zhang, Kobkul Laoteng, Guang Hu, Wanwipa Vongsangnak
Software Mentions: 1
Published: over 6 years ago