10.1371/journal.pone.0131943

ParAB Partition Dynamics in Firmicutes: Nucleoid Bound ParA Captures and Tethers ParB-Plasmid Complexes
Cited by: 10
Author(s): Virginia S. Lioy, Andrea Volante, Nora Soberón, Rudi Lurz, Silvia Ayora, Juan C. Alonso
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0029525

Aminoacyl-tRNA-Charged Eukaryotic Elongation Factor 1A Is the Bona Fide Substrate for Legionella pneumophila Effector Glucosyltransferases
Cited by: 25
Author(s): Tina Tzivelekidis, Thomas Jank, Corinna Pohl, Andreas Schlösser, Sabine Rospert, Charlotte R. Knudsen, Marina V. Rodnina, Yury Belyi, Klaus Aktories
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0130172

Rice stripe1-2 and stripe1-3 Mutants Encoding the Small Subunit of Ribonucleotide Reductase Are Temperature Sensitive and Are Required for Chlorophyll Biosynthesis
Cited by: 8
Author(s): Xiaoqiong Chen, Ling Zhu, Xinping Long, Kangxi Du, Xiuhua Ran, Xiaoyun Cui, Quanju Xiang, Hongyu Zhang, Peizhou Xu, Xiaoyun Wu
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0110965

A Polyketide Synthase Acyltransferase Domain Structure Suggests a Recognition Mechanism for Its Hydroxymalonyl-Acyl Carrier Protein Substrate
Cited by: 23
Author(s): Hyunjun Park, Brian M. Kevany, David H. Dyer, Michael G. Thomas, Katrina T. Forest
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0017159

Functional Role of Glutamine 28 and Arginine 39 in Double Stranded RNA Cleavage by Human Pancreatic Ribonuclease
Cited by: 16
Author(s): Tabish Rehman, Punyatirtha Dey, Md. Imtaiyaz Hassan, Faizan Ahmad, Janendra K. Batra
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0186570

Protein dynamics and structural waters in bromodomains
Cited by: 16
Author(s): Xiaoxiao Zhang, Kai Chen, Yun‐Dong Wu, Olaf Wiest
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0190452

Identification of a protective B-cell epitope of the Staphylococcus aureus GapC protein by screening a phage-displayed random peptide library
Cited by: 5
Author(s): Mengyao Wang, Lu Zhai, Weiwu Yu, Yuhua Wei, Lizi Wang, Shuo Liu, Wanyu Li, Xiaoting Li, Simiao Yu, Marc E. Rothenberg, Hua Zhang, Chen Jing, Zhenyue Feng, Liquan Yu, Yudong Cui
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0031852

Low-Resolution Molecular Models Reveal the Oligomeric State of the PPAR and the Conformational Organization of Its Domains in Solution
Cited by: 22
Author(s): Amanda Bernardes, Fernanda Aparecida Heleno Batista, Mário de Oliveira Neto, Ana Carolina M. Figueira, Paul Webb, Daniel Menezes Saidemberg, Mário Sérgio Palma, Igor Polikarpov
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0204776

Structure and applications of novel influenza HA tri-stalk protein for evaluation of HA stem-specific immunity
Cited by: 10
Author(s): I-Na Lu, Anna Kirsteina, Sophie Farinelle, Stéphanie Willième, Kaspars Tārs, Claude P. Muller, Andris Kazāks
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0103632

Kinetic and Sequence-Structure-Function Analysis of LinB Enzyme Variants with β- and δ-Hexachlorocyclohexane
Cited by: 3
Author(s): Rinku Pandey, Del Lucent, Kavita Kumari, Pooja Sharma, Rup Lal, John G. Oakeshott, Gyanendra Pandey
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0121860

An In Silico Insight into Novel Therapeutic Interaction of LTNF Peptide-LT10 and Design of Structure Based Peptidomimetics for Putative Anti-Diabetic Activity
Cited by: 10
Author(s): Sonali Chavan, Deepti D. Deobagkar
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0205557

Amino acid signatures in the HLA class II peptide-binding region associated with protection/susceptibility to the severe West Nile Virus disease
Cited by: 7
Author(s): Constantina Sarri, Γεώργιος Παπαδόπουλος, Anna Papa, Athanasios Tsakris, Danai Pervanidou, A Baka, C. Politis, Charalambos Billinis, Christos Hadjichristodoulou, Zissis Mamuris, Malwest
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0096967

Glycoengineering of Interferon-β 1a Improves Its Biophysical and Pharmacokinetic Properties
Cited by: 25
Author(s): Kyoung Song, In‐Soo Yoon, Nam Ah Kim, Dong Hwan Kim, Jongmin Lee, Hee Jung Lee, Saehyung Lee, Sung-Hyun Choi, Min‐Koo Choi, Ha Hyung Kim, Seong Hoon Jeong, Woo Sung Son, Dae‐Duk Kim, Young Kee Shin
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0079562

Dynamic Interplay between the Periplasmic and Transmembrane Domains of GspL and GspM in the Type II Secretion System
Cited by: 33
Author(s): Mathilde Lallemand, Frédéric H. Login, Natalia Guschinskaya, Camille Pineau, Géraldine Effantin, Xavier Robert, Vladimir E. Shevchik
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0120887

Structural Basis for Ubiquitin Recognition by Ubiquitin-Binding Zinc Finger of FAAP20
Cited by: 11
Author(s): Aya Toma, Tomio S. Takahashi, Yusuke Sato, Atsushi Yamagata, Sakurako Goto-Ito, Shinichiro Nakada, Atsuhiko Fukuto, Yasunori Horikoshi, Satoshi Tashiro, Shuya Fukai
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0077226

Molecular Characterization of Monoclonal Antibodies that Inhibit Acetylcholinesterase by Targeting the Peripheral Site and Backdoor Region
Cited by: 9
Author(s): Yves Bourne, Ludovic Renault, Sosthène Essono, Grégoire Mondielli, Patricia Lamourette, Didier Boquet, Jacques Grassi, Pierre Marchot
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0067517

Metal Binding Is Critical for the Folding and Function of Laminin Binding Protein, Lmb of Streptococcus agalactiae
Cited by: 15
Author(s): Preethi Ragunathan, D Sridaran, Anja Weigel, Sarah Shabayek, Barbara Spellerberg, Karthe Ponnuraj
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0092822

Glycan Masking of Hemagglutinin for Adenovirus Vector and Recombinant Protein Immunizations Elicits Broadly Neutralizing Antibodies against H5N1 Avian Influenza Viruses
Cited by: 41
Author(s): S. H. Lin, Wen-Chun Liu, Jia-Tsrong Jan, Suh-Chin Wu
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0073518

Functional Display of Platelet-Binding VWF Fragments on Filamentous Bacteriophage
Cited by: 8
Author(s): Andrew Yee, Fen Lai Tan, David Ginsburg
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0023502

Probing the Role of Protein Surface Charge in the Activation of PrfA, the Central Regulator of Listeria monocytogenes Pathogenesis
Cited by: 21
Author(s): Bobbi Xayarath, Karl Volz, Jennifer I. Smart, Nancy E. Freitag
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0036770

In Silico Prediction and Analysis of Caenorhabditis EF-hand Containing Proteins
Cited by: 9
Author(s): Manish Kumar, Shadab Ahmad, Ejaz Ahmad, Muheet Alam Saifi, Rizwan Hasan Khan
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0077207

Zebavidin - An Avidin-Like Protein from Zebrafish
Cited by: 20
Author(s): Barbara Taskinen, Joanna Zmurko, Markus Ojanen, Sampo Kukkurainen, Parthiban Marimuthu, Juha Määttä, Jenni Leppiniemi, Janne Jänis, Mataleena Parikka, Hannu Turpeinen, Mika Rämet, Marko Pesu, Mark S. Johnson, Markku S. Kulomaa, Tomi T. Airenne, Vesa P. Hytönen
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0060294

An Archaeal Homolog of Proteasome Assembly Factor Functions as a Proteasome Activator
Cited by: 20
Author(s): Kentaro Kumoi, Tadashi Satoh, Kazuyoshi Murata, Takeshi Hiromoto, Tsunehiro Mizushima, Yukiko Kamiya, Masanori Noda, Susumu Uchiyama, Hirokazu Yagi, Koichi Kato
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0088191

Antibody Recognition of Shiga Toxins (Stxs): Computational Identification of the Epitopes of Stx2 Subunit A to the Antibodies 11E10 and S2C4
Cited by: 6
Author(s): Yongjun Jiao, Fiona S. Legge, Xianying Zeng, Herbert Treutlein, Jun Zeng
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0023342

Molecular Dynamics Analysis Reveals Structural Insights into Mechanism of Nicotine N-Demethylation Catalyzed by Tobacco Cytochrome P450 Mono-Oxygenase
Cited by: 12
Author(s): Shan Wang, Shuo Yang, Baiyi An, Shichen Wang, Yuejia Yin, Yang Lu, Ying Xü, Dongyun Hao
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0035792

IspE Inhibitors Identified by a Combination of In Silico and In Vitro High-Throughput Screening
Cited by: 17
Author(s): N. Tidten-Luksch, Raffaella Grimaldi, Leah S. Torrie, Julie A. Frearson, William N. Hunter, Ruth Brenk
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0052306

Epitope Dampening Monotypic Measles Virus Hemagglutinin Glycoprotein Results in Resistance to Cocktail of Monoclonal Antibodies
Cited by: 23
Author(s): Patrycja Lech, Gregory J. Tobin, Ruth V. Bushnell, Emily Gutschenritter, Linh Pham, Rebecca A. Nace, Els Verhoeyen, François–Loïc Cosset, Claude P. Muller, Stephen J. Russell, Peter L. Nara
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0175321

Effects of the RGD loop and C-terminus of rhodostomin on regulating integrin αIIbβ3 recognition
Cited by: 7
Author(s): Yao Chang, Jia Hau Shiu, Chen‐Hung Huang, Yi Chun Chen, Chiu Yueh Chen, Yung Sheng Chang, Woei Jer Chuang
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0120417

Large-Scale Evolutionary Analyses on SecB Subunits of Bacterial Sec System
Cited by: 4
Author(s): Shaomin Yan, Guang Wu
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0062540

Candidate Gene Study of TRAIL and TRAIL Receptors: Association with Response to Interferon Beta Therapy in Multiple Sclerosis Patients
Cited by: 17
Author(s): Carlos Lopez‐Gómez, Almudena Pino-Ángeles, Teresa Órpez-Zafra, María Jesús Pinto-Medel, Begoña Oliver-Martos, Jesús Ortega-Pinazo, Carlos Arnáiz, Cristina Guijarro-Castro, Jezabel Varadé, Roberto Álvarez‐Lafuente, Elena Urcelay, Francisca Sánchez‐Jiménez, Óscar Fernández, Laura Leyva
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0157591

Molecular Cloning of HbPR-1 Gene from Rubber Tree, Expression of HbPR-1 Gene in Nicotiana benthamiana and Its Inhibition of Phytophthora palmivora
Cited by: 11
Author(s): Uraiwan Khunjan, Kitiya Ekchaweng, Tanate Panrat, Mingxing Tian, Nunta Churngchow
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0162790

The Effect of Tethers on Artificial Cell Membranes: A Coarse-Grained Molecular Dynamics Study
Cited by: 11
Author(s): William Hoiles, R. N. Gupta, Bruce Cornell, Charles G. Cranfield, Vikram Krishnamurthy
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0167932

Bg10: A Novel Metagenomics Alcohol-Tolerant and Glucose-Stimulated GH1 ß-Glucosidase Suitable for Lactose-Free Milk Preparation
Cited by: 16
Author(s): Elisângela Soares Gomes-Pepe, Elwi Guillermo Machado Sierra, Mariana Rangel Pereira, Tereza Cristina Luque Castellane, Eliana Gertrudes de Macedo Lemos
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0082458

Structural Insights into RbmA, a Biofilm Scaffolding Protein of V. Cholerae
Cited by: 33
Author(s): M. Maestre-Reyna, Wen‐Jin Wu, Andrew H.J. Wang
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0134640

The Imidazoquinoline Toll-Like Receptor-7/8 Agonist Hybrid-2 Potently Induces Cytokine Production by Human Newborn and Adult Leukocytes
Cited by: 42
Author(s): Lakshmi Ganapathi, Simon D. van Haren, David J. Dowling, Ilana Bergelson, Nikunj M. Shukla, Subbalakshmi S. Malladi, Rajalakshmi Balakrishna, Hiromi Tanji, Umeharu Ohto, Toshiyuki Shimizu, Sunil A. David, Ofer Levy
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0033709

Computable Features Required to Evaluate the Efficacy of Drugs and a Universal Algorithm to Find Optimally Effective Drug in a Drug Complex
Cited by: 2
Author(s): Kui Wang, Wei Cui, Gang Hu, Jianzhao Gao, Zhonghua Wu, Xingye Qiu, Jishou Ruan, Yi Feng, Zhi Qi, Yiming Shao, Jack A. Tuszyński
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0032212

Single Cycle Structure-Based Humanization of an Anti-Nerve Growth Factor Therapeutic Antibody
Cited by: 9
Author(s): Sonia Covaceuszach, Sara Marinelli, I. Krastanova, Gabriele Ugolini, Flaminia Pavone, Doriano Lamba, Antonino Cattaneo
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0045437

Solution Structure of MSL2 CXC Domain Reveals an Unusual Zn3Cys9 Cluster and Similarity to Pre-SET Domains of Histone Lysine Methyltransferases
Cited by: 18
Author(s): Sanduo Zheng, Jia Wang, Yingang Feng, Jinfeng Wang, Keqiong Ye
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0104790

PMCA4 (ATP2B4) Mutation in Familial Spastic Paraplegia
Cited by: 28
Author(s): Miaoxin Li, Philip Wing Lok Ho, Shirley Yin Yu Pang, Zero Ho Man Tse, Michelle Kung, Pak C. Sham, Shu Leong Ho
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0090557

NMR Characterization of the Near Native and Unfolded States of the PTB Domain of Dok1: Alternate Conformations and Residual Clusters
Cited by: 6
Author(s): Sebanti Gupta, Surajit Bhattacharjya
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0070358

Crystal Structure of Pim1 Kinase in Complex with a Pyrido[4,3-D]Pyrimidine Derivative Suggests a Unique Binding Mode
Cited by: 8
Author(s): Sang Jae Lee, Byeong-Gu Han, Jea-Won Cho, Jang‐Sik Choi, Jaekyoo Lee, Ho-Juhn Song, Jai‐Kyoung Koh, Byung Il Lee
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0019253

Critical Factors Governing the Difference in Antizyme-Binding Affinities between Human Ornithine Decarboxylase and Antizyme Inhibitor
Cited by: 19
Author(s): Yen Chin Liu, Yiliang Liu, Jia-Yang Su, Guang‐Yaw Liu, Hui‐Chih Hung
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0057804

Hydrogen Bond Strengths in Phosphorylated and Sulfated Amino Acid Residues
Cited by: 23
Author(s): Chaya S. Rapp, Hadassa Klerman, Emily J. Levine, Christopher L. McClendon
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0157286

Molecular Dynamics Simulations and Structural Analysis to Decipher Functional Impact of a Twenty Residue Insert in the Ternary Complex of Mus musculus TdT Isoform
Cited by: 9
Author(s): Eshita Mutt, Ramanathan Sowdhamini
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0181091

Evolution of the cAMP-dependent protein kinase (PKA) catalytic subunit isoforms
Cited by: 38
Author(s): Kristoffer Søberg, Line Victoria Moen, Bjørn Steen Skålhegg, Jon K. Laerdahl
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0039252

Prediction of Metal Ion–Binding Sites in Proteins Using the Fragment Transformation Method
Cited by: 91
Author(s): Chih-Hao Lu, Yu‐Feng Lin, Jau-Ji Lin, Chao Yu
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0055478

A Compensatory Mutation Provides Resistance to Disparate HIV Fusion Inhibitor Peptides and Enhances Membrane Fusion
Cited by: 11
Author(s): Matthew P. Wood, Amy L. Cole, Piotr Ruchala, Alan J. Waring, Lisa C. Rohan, Preston A. Marx, Patrick M. Tarwater, Phalguni Gupta, Alexander M. Cole
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0107309

Structural Insights into the Recognition of Phosphopeptide by the FHA Domain of Kanadaptin
Cited by: 5
Author(s): Qingping Xu, Marc C. Deller, T.K. Nielsen, Joanna C Grant, Scott A. Lesley, Marc‐André Elsliger, Ashley M. Deacon, Ian A. Wilson
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0050028

PEGylation Extends Circulation Half-Life While Preserving In Vitro and In Vivo Activity of Tissue Inhibitor of Metalloproteinases-1 (TIMP-1)
Cited by: 37
Author(s): Jyotica Batra, James C. Robinson, Christine Mehner, Alexandra Hockla, Erin Miller, Derek C. Radisky, Evette S. Radisky
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0240345

Large scale genomic analysis of 3067 SARS-CoV-2 genomes reveals a clonal geo-distribution and a rich genetic variations of hotspots mutations
Cited by: 58
Author(s): Meriem Laamarti, Tarek Alouane, Souad Kartti, Mohammed Walid Chemao-Elfihri, Mohammed Hakmi, Abdelomunim Essabbar, Mohamed Laamarti, Haitam Hlali, Houda Bendani, Nassma Boumajdi, Oussama Benhrif, Loubna Allam, Naïma El Hafidi, Rachid El Jaoudi, Imane Allali, Nabila Marchoudi, Jamal Fekkak, Houda Benrahma, Chakib Nejjari, Saaïd Amzazi, Lahcen Belyamani, Azeddine Ibrahimi
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0016228

Laboratory-Evolved Mutants of an Exogenous Global Regulator, IrrE from Deinococcus radiodurans, Enhance Stress Tolerances of Escherichia coli
Cited by: 63
Author(s): Tingjian Chen, Jianqing Wang, Rong Yang, Jicong Li, Min Lin, Zhanglin Lin
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0074574

Modeling the Conformational Changes Underlying Channel Opening in CFTR
Cited by: 45
Author(s): Kazi Shefaet Rahman, Guiying Cui, Stephen C. Harvey, Nael A. McCarty
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0114580

Chemical Display of Pyrimidine Bases Flipped Out by Modification-Dependent Restriction Endonucleases of MspJI and PvuRts1I Families
Cited by: 6
Author(s): Evelina Zagorskaitė, Giedrius Sasnauskas
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0095989

Comparative Structural Modeling of Six Old Yellow Enzymes (OYEs) from the Necrotrophic Fungus Ascochyta rabiei : Insight into Novel OYE Classes with Differences in Cofactor Binding, Organization of Active Site Residues and Stereopreferences
Cited by: 19
Author(s): Shadab Nizam, Rajesh Kumar Gazara, Sandhya Verma, K. B. Singh, Praveen Kumar Verma
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0022163

Proton Pump Inhibitors Inhibit Metformin Uptake by Organic Cation Transporters (OCTs)
Cited by: 142
Author(s): Anne T. Nies, Ute Hofmann, Claudia Resch, Elke Schaeffeler, Maria Rius, Matthias Schwab
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0052802

Oryza sativa COI Homologues Restore Jasmonate Signal Transduction in Arabidopsis coi1-1 Mutants
Cited by: 67
Author(s): Han Yong Lee, Ju-Seok Seo, Jang Hee Cho, Harin Jung, Ju-Kon Kim, Jong Seob Lee, Sangkee Rhee, Yang Do Choi
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0011515

Rationalisation of the Differences between APOBEC3G Structures from Crystallography and NMR Studies by Molecular Dynamics Simulations
Cited by: 17
Author(s): Flavia Autore, Julien R. C. Bergeron, Michael H. Malim, Franca Fraternali, Hendrik Huthoff
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0036212

Proteome-Wide Analysis of Single-Nucleotide Variations in the N-Glycosylation Sequon of Human Genes
Cited by: 32
Author(s): Raja Mazumder, Krishna S. Morampudi, Mona Motwani, Sona Vasudevan, Radoslav Goldman
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0083586

Efficicent (R)-Phenylethanol Production with Enantioselectivity-Alerted (S)-Carbonyl Reductase II and NADPH Regeneration
Cited by: 14
Author(s): Rongzhen Zhang, Botao Zhang, Yan Xu, Yaohui Li, Ming Li, Hongbo Liang, Rong Xiao
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0075272

Differential Active Site Loop Conformations Mediate Promiscuous Activities in the Lactonase SsoPox
Cited by: 82
Author(s): Julien Hiblot, Guillaume Gotthard, Mikael Elias, Éric Chabrière
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0154619

Independent Evolution of Six Families of Halogenating Enzymes
Cited by: 15
Author(s): Gang‐Ming Xu, Bin‐Gui Wang
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0010064

Metal-Free ALS Variants of Dimeric Human Cu,Zn-Superoxide Dismutase Have Enhanced Populations of Monomeric Species
Cited by: 48
Author(s): Anna-Karin E. Svensson, Osman Bilsel, Can Kayatekin, Jessica A. Adefusika, Jill A. Zitzewitz, C. Robert Matthews
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0009568

Identifying Unexpected Therapeutic Targets via Chemical-Protein Interactome
Cited by: 46
Author(s): Lun Yang, Jian Chen, Leming Shi, Michael P. Hudock, Kejian Wang, Lin He
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0067465

Structural Studies of a Bacterial tRNAHIS Guanylyltransferase (Thg1)-Like Protein, with Nucleotide in the Activation and Nucleotidyl Transfer Sites
Cited by: 15
Author(s): Samantha J. Hyde, Bhalchandra S. Rao, B.E. Eckenroth, Jane E. Jackman, Sylvie Doublié
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0114793

Purification, Cloning, Characterization, and N-Glycosylation Analysis of a Novel β-Fructosidase from Aspergillus oryzae FS4 Synthesizing Levan- and Neolevan-Type Fructooligosaccharides
Cited by: 13
Author(s): Lixin Xu, Dongxue Wang, Lili Lu, Lan Jin, Jiawei Liu, Deyong Song, Zhongwu Guo, Min Xiao
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0174410

In silico design of the first DNA-independent mechanism-based inhibitor of mammalian DNA methyltransferase Dnmt1
Cited by: 21
Author(s): Vedran Miletić, Ivica Odorčić, Patrik Nikolić, Željko M. Svedružić
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0202989

Next generation sequencing reveals a novel nonsense mutation in MSX1 gene related to oligodontia
Cited by: 17
Author(s): Ondřej Bonczek, Peter Bielik, Přemysl Krejčí, Tomáš Zeman, Lydie IzakovičováHollá, Jana Šoukalová, Jiřı́ Vaněk, Tereza Gerguri, Vladimír J. Balcar, Omar Šerý
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0019411

Structural Basis for Variant-Specific Neuroligin-Binding by α-Neurexin
Cited by: 17
Author(s): Hiroki Tanaka, Terukazu Nogi, Norio Yasui, Katsunori Iwasaki, Junichi Takagi
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0134418

Translation Elongation Factor Tuf of Acinetobacter baumannii Is a Plasminogen-Binding Protein
Cited by: 28
Author(s): Arno Koenigs, Peter F. Zipfel, Peter Kraiczy
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0066936

Substrate Channel Flexibility in Pseudomonas aeruginosa MurB Accommodates Two Distinct Substrates
Cited by: 5
Author(s): Ming Wei Chen, Bernhard Lohkamp, R. Schnell, Julien Lescar, Günter Schneider
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0119967

Polymorphisms of Chicken TLR3 and 7 in Different Breeds
Cited by: 16
Author(s): Wenke Ruan, An Jian, Yongfeng Wu
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0136969

Flexible Structure of Peptide-Bound Filamin A Mechanosensor Domain Pair 20–21
Cited by: 13
Author(s): Jonne Seppälä, Helena Tossavainen, Nebojša Rodić, Perttu Permi, Ulla Pentikäinen, Jari Ylänne
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0143963

Isolation, N-glycosylations and Function of a Hyaluronidase-Like Enzyme from the Venom of the Spider Cupiennius salei
Cited by: 23
Author(s): Olivier Biner, Christian Trachsel, Aline Moser, Lukas S. Kopp, Nicolas Langenegger, Urs Kämpfer, Christoph von Ballmoos, Wolfgang Nentwig, Stefan Schürch, Johann Schaller, Lucia Kuhn‐Nentwig
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0098365

Structural and Mutagenic Analysis of the RM Controller Protein C.Esp1396I
Cited by: 2
Author(s): Richard N. A. Martin, J.E. McGeehan, Geoff Kneale
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0087125

NMR Spectroscopic and Bioinformatic Analyses of the LTBP1 C-Terminus Reveal a Highly Dynamic Domain Organisation
Cited by: 9
Author(s): I. M. Robertson, Penny A. Handford, Christina Redfield
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0238969

Correction: Phage Display of the Serpin Alpha-1 Proteinase Inhibitor Randomized at Consecutive Residues in the Reactive Centre Loop and Biopanned with or without Thrombin
Cited by: 0
Author(s): Benjamin M. T. Scott, Wadim L. Matochko, Richard F. Gierczak, Varsha Bhakta, Ratmir Derda, William P. Sheffield
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0082024

In Silico, In Vitro and In Vivo Analysis of Binding Affinity between N and C-Domains of Clostridium perfringens Alpha Toxin
Cited by: 22
Author(s): Siva R. Uppalapati, Joseph J. Kingston, Insaf Ahmed Qureshi, H. S. Murali, Harsh Vardhan Batra
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0079590

Crystal Structure of the Pleckstrin Homology Domain from the Ceramide Transfer Protein: Implications for Conformational Change upon Ligand Binding
Cited by: 21
Author(s): Jennifer Prashek, Trung Truong, Xiaolan Yao
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0039652

HCV Genotypes Are Differently Prone to the Development of Resistance to Linear and Macrocyclic Protease Inhibitors
Cited by: 78
Author(s): Valeria Cento, Carmen Mirabelli, Romina Salpini, Salvatore Dimonte, Anna Artese, Giosuè Costa, Fabio Mercurio, Valentina Svicher, Lucia Parrotta, Ada Bertoli, Marco Ciotti, D. Di Paolo, C. Sarrecchia, Massimo Andreoni, Stefano Alcaro, M. Angélico, Carlo Federico Perno, Francesca Ceccherini‐Silberstein
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0097633

A Conserved Motif in the Linker Domain of STAT1 Transcription Factor Is Required for Both Recognition and Release from High-Affinity DNA-Binding Sites
Cited by: 9
Author(s): Bettina Hüntelmann, Julia Staab, Christoph Herrmann‐Lingen, Thomas Meyer
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0080197

Molecular Modeling Reveals the Novel Inhibition Mechanism and Binding Mode of Three Natural Compounds to Staphylococcal α-Hemolysin
Cited by: 38
Author(s): Jiazhang Qiu, Dacheng Wang, Yu Zhang, Jing Dong, Jianfeng Wang, Xiaodi Niu
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0060498

Engineering Agatoxin, a Cystine-Knot Peptide from Spider Venom, as a Molecular Probe for In Vivo Tumor Imaging
Cited by: 43
Author(s): Sarah Moore, Cheuk Lun Leung, Heidi K. Norton, Jennifer R. Cochran
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0012597

Molecular Modeling Study for Interaction between Bacillus subtilis Obg and Nucleotides
Cited by: 8
Author(s): Yuno Lee, Woo Young Bang, Songmi Kim, Prettina Lazar, Chul Wook Kim, Jeong Dong Bahk, Keun Woo Lee
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0153337

Characterization of the FtsZ C-Terminal Variable (CTV) Region in Z-Ring Assembly and Interaction with the Z-Ring Stabilizer ZapD in E. coli Cytokinesis
Cited by: 11
Author(s): Kai-Feng Huang, Aaron Mychack, Lukasz Tchorzewski, Anuradha Janakiraman
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0032217

Structural Characterisation of Tpx from Yersinia pseudotuberculosis Reveals Insights into the Binding of Salicylidene Acylhydrazide Compounds
Cited by: 17
Author(s): Mads Gabrielsen, Katherine S. H. Beckham, Victoria A. Feher, Caroline E. Zetterström, Dai Wang, Sylke Müller, Mikael Elofsson, Rommie E. Amaro, Olwyn Byron, Andrew J. Roe
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0008553

Predicting the Antigenic Structure of the Pandemic (H1N1) 2009 Influenza Virus Hemagglutinin
Cited by: 147
Author(s): Manabu Igarashi, Kimihito Ito, Reiko Yoshida, Daisuke Tomabechi, Hiroshi Kida, Ayato Takada
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0021608

Functional Expression of Spider Neurotoxic Peptide Huwentoxin-I in E. coli
Cited by: 20
Author(s): Er Meng, Tianfu Cai, Wenying Li, Hui Zhang, Yanbo Liu, Kuan Peng, Songping Liang, Dongyi Zhang
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0104520

The Impact of Nitration on the Structure and Immunogenicity of the Major Birch Pollen Allergen Bet v 1.0101
Cited by: 62
Author(s): Chloé Ackaert, S. Kofler, Jutta Horejs‐Hoeck, Nora Zulehner, Claudia Asam, Susanne von Grafenstein, Julian E. Fuchs, Peter Briza, Klaus R. Liedl, Barbara Bohle, Fátima Ferreira, Hans Brandstetter, Gertie Janneke Oostingh, Albert Duschl
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0032392

A Novel Serpin with Antithrombin-Like Activity in Branchiostoma japonicum: Implications for the Presence of a Primitive Coagulation System
Cited by: 7
Author(s): Yeqing Chao, Chunxin Fan, Yujun Liang, Bei Gao, Shicui Zhang
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0036960

Enzymatic Activities and DNA Substrate Specificity of Mycobacterium tuberculosis DNA Helicase XPB
Cited by: 20
Author(s): Seetha V. Balasingham, Ephrem Debebe Zegeye, Håvard Homberset, Marie L. Rossi, Jon K. Laerdahl, Vilhelm A. Bohr, Tone Tønjum
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0250902

Biochemical evidence of epicuticular wax compounds involved in cotton-whitefly interaction
Cited by: 4
Author(s): Muhammad Ali, Muhammad Azmat Ullah Khan, Abdul Qayyum Rao, Atia Iqbal, Salah Ud Din, Ahmad Ali Shahid
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0206955

Characterisation of a type II functionally-deficient variant of alpha-1-antitrypsin discovered in the general population
Cited by: 9
Author(s): Mattia Laffranchi, Emma Elliston, Fabrizio Gangemi, Romina Berardelli, David A. Lomas, James A. Irving, Annamaria Fra
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0034529

Characterization of Multi-Functional Properties and Conformational Analysis of MutS2 from Thermotoga maritima MSB8
Cited by: 5
Author(s): Eui-Young Jeong, Hang-Hyun Jo, Tae Kyun Kim, Changill Ban
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0052790

Piperidinols That Show Anti-Tubercular Activity as Inhibitors of Arylamine N-Acetyltransferase: An Essential Enzyme for Mycobacterial Survival Inside Macrophages
Cited by: 24
Author(s): Areej Abuhammad, Elizabeth Fullam, E.D. Lowe, David Staunton, Akane Kawamura, Isaac M. Westwood, Sanjib Bhakta, A. Christopher Garner, David Wilson, Peter Seden, Stephen G. Davies, Angela J. Russell, Elspeth F. Garman, Edith Sim
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0040307

Characteristic Features of Kynurenine Aminotransferase Allosterically Regulated by (Alpha)-Ketoglutarate in Cooperation with Kynurenine
Cited by: 9
Author(s): Ken Okada, Clement Angkawidjaja, Yuichi Koga, Kazufumi Takano, Shigenori Kanaya
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0074425

Development of Novel Rifampicin-Derived P-Glycoprotein Activators/Inducers. Synthesis, In Silico Analysis and Application in the RBE4 Cell Model, Using Paraquat as Substrate
Cited by: 20
Author(s): Vânia Vilas-Boas, Renata Silva, Andreia Palmeira, Emı́lia Sousa, Luı́sa M. Ferreira, Paula S. Branco, Félix Carvalho, Maria de Lourdes Bastos, Fernando Remião
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0067244

Active-State Models of Ternary GPCR Complexes: Determinants of Selective Receptor-G-Protein Coupling
Cited by: 39
Author(s): Ralf C. Kling, Harald Lanig, Timothy Clark, Peter Gmeiner
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0026727

Context Mediates Antimicrobial Efficacy of Kinocidin Congener Peptide RP-1
Cited by: 16
Author(s): Nannette Y. Yount, Sidney Cohen, Deborah Kupferwasser, Alan J. Waring, Piotr Ruchala, Sanjai Sharma, Karlman Wasserman, Chun‐Ling Jung, Michael R. Yeaman
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0081074

Dissection of the TssB-TssC Interface during Type VI Secretion Sheath Complex Formation
Cited by: 19
Author(s): Xiang Y. Zhang, Yannick R. Brunet, Laureen Logger, Badreddine Douzi, Christian Cambillau, Laure Journet, Éric Cascales
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0119207

Protein-Binding RNA Aptamers Affect Molecular Interactions Distantly from Their Binding Sites
Cited by: 19
Author(s): Daniel M. Dupont, Cathrine K. Thuesen, Kenneth A. Bøtkjær, Manja A. Behrens, Karen Dam, H. Sørensen, Jan Skov Pedersen, Michael Ploug, Jan K. Jensen, Peter A. Andreasen
Software Mentions: 1
Published: over 11 years ago