pypi: PyMOL | Projects | Ecosyste.ms: Papers

10.1073/pnas.2102092118

PilB from Streptococcus sanguinis is a bimodular type IV pilin with a direct role in adhesion
Cited by: 17
Author(s): Claire Raynaud, Devon Sheppard, Jamie-Lee Berry, Ishwori Gurung, Vladimir Pelicic
Software Mentions: 1
Published: about 5 years ago

10.1073/pnas.2024146118

High-mass MALDI-MS unravels ligand-mediated G protein–coupling selectivity to GPCRs
Cited by: 8
Author(s): Na Wu, Agnieszka Olechwier, C Brunner, Patricia C. Edwards, Ching‐Ju Tsai, Christopher G. Tate, Gebhard F. X. Schertler, Gisbert Schneider, Xavier Deupí, Renato Zenobi, Pikyee Ma
Software Mentions: 1
Published: almost 5 years ago

10.1007/s13238-014-0072-x

Development of an activity-directed selection system enabled significant improvement of the carboxylation efficiency of Rubisco
Cited by: 49
Author(s): Cai Zhang, Guoxia Liu, Junli Zhang, Yin Li
Software Mentions: 1
Published: about 12 years ago

10.1007/s13238-013-0012-1

Crystal structure of E. coli arginyl-tRNA synthetase and ligand binding studies revealed key residues in arginine recognition
Cited by: 6
Author(s): Kelei Bi, Yongchun Zheng, Feng Gao, Jianshu Dong, Jiangyun Wang, Yi Wang, Weimin Gong
Software Mentions: 1
Published: over 12 years ago

10.1007/s13238-014-0044-1

Structural insights into the assembly of the 30S ribosomal subunit in vivo: functional role of S5 and location of the 17S rRNA precursor sequence
Cited by: 26
Author(s): Zhixiu Yang, Qiang Guo, Simon Goto, Yuling Chen, Ningning Li, Kaige Yan, Yixiao Zhang, Akira Muto, Haiteng Deng, Hyouta Himeno, Jianlin Lei, Ning Gao
Software Mentions: 1
Published: over 12 years ago

10.1007/s13238-014-0078-4

The PHD1 finger of KDM5B recognizes unmodified H3K4 during the demethylation of histone H3K4me2/3 by KDM5B
Cited by: 60
Author(s): Yanyan Zhang, Huirong Yang, Xiaomao Guo, Naiyan Rong, Song Yang, Youwei Xu, Wenxian Lan, Xu Zhang, Maili Liu, Yanhui Xu, Chunyang Cao
Software Mentions: 1
Published: about 12 years ago

10.1007/s13238-014-0115-3

Investigation of a special neutralizing epitope of HEV E2s
Cited by: 2
Author(s): Min You, Xin Lü, Yi Yang, Xiao Zhang, Yingwei Chen, Hai Yu, Shaowei Li, Jun Zhang, Zhiqiang An, Wenxin Luo, Ningshao Xia
Software Mentions: 1
Published: over 11 years ago

10.1007/s13238-016-0284-3

Cataract-causing mutation S228P promotes βB1-crystallin aggregation and degradation by separating two interacting loops in C-terminal domain
Cited by: 29
Author(s): Liqun Qi, Lidan Hu, Huihui Liu, Haiyun Li, Xiao-Yao Leng, Yong-Bin Yan
Software Mentions: 1
Published: about 10 years ago

10.1007/s13238-016-0296-z

Structural characterization of coatomer in its cytosolic state
Cited by: 12
Author(s): Shengliu Wang, Yujia Zhai, Xiaoyun Pang, Tongxin Niu, Yue-He Ding, Meng‐Qiu Dong, Victor Hsu, Zhe Sun, Fei Sun
Software Mentions: 1
Published: almost 10 years ago

10.1007/s13238-017-0433-3

Glycosylation engineering of therapeutic IgG antibodies: challenges for the safety, functionality and efficacy
Cited by: 143
Author(s): Yusuke Mimura, Toshihiko Katoh, Radka Saldova, Róisín O’Flaherty, Takeki Izumi, Yuka Mimura‐Kimura, Toshiaki Utsunomiya, Yoichi Mizukami, Kenji Yamamoto, Tsuneo Matsumoto, Pauline M. Rudd
Software Mentions: 1
Published: about 9 years ago

10.1007/s13238-017-0473-8

IgG Fc engineering to modulate antibody effector functions
Cited by: 216
Author(s): Xinhua Wang, Mary Mathieu, Randall J. Brezski
Software Mentions: 1
Published: almost 9 years ago

10.1007/s13238-020-00712-y

Structures of a P4-ATPase lipid flippase in lipid bilayers
Cited by: 31
Author(s): Yilin He, Jinkun Xu, Xiaofei Wu, Li Long
Software Mentions: 1
Published: over 6 years ago

10.1093/protein/gzt022

Engineered antibody Fc variant with selectively enhanced Fc RIIb binding over both Fc RIIaR131 and Fc RIIaH131
Cited by: 95
Author(s): Futa Mimoto, Hitoshi Katada, Shojiro Kadono, Tomoyuki Igawa, Taichi Kuramochi, Masaru Muraoka, Youichiro Wada, Kenta Haraya, Taro Miyazaki, Kunihiro Hattori
Software Mentions: 1
Published: about 13 years ago

10.1093/protein/gzv021

Solution structure of a soluble fragment derived from a membrane protein by shotgun proteolysis
Cited by: 4
Author(s): Mark D. Allen, Mary Christie, Peter Jones, Benjamin T. Porebski, Brendan Roome, Stefan Freund, Ashley M. Buckle, Mark Bycroft, Daniel Christ
Software Mentions: 1
Published: over 11 years ago

10.1093/protein/gzw049

Engineering a minimal G protein to facilitate crystallisation of G protein-coupled receptors in their active conformation
Cited by: 78
Author(s): Byron Carpenter, Christopher G. Tate
Software Mentions: 1
Published: almost 10 years ago

10.1002/pro.3573

Insights from the crystal structure of the chicken CREB3 bZIP suggest that members of the CREB3 subfamily transcription factors may be activated in response to oxidative stress
Cited by: 2
Author(s): Keshalini Sabaratnam, Max Renner, Guido C. Paesen, K. Harlos, Venugopal Nair, Raymond J. Owens, Jonathan M. Grimes
Software Mentions: 1
Published: over 7 years ago

10.1002/pro.3739

Binding of FAD and tryptophan to the tryptophan 6‐halogenase Thal is negatively coupled
Cited by: 16
Author(s): A. Moritzer, Hartmut H. Niemann
Software Mentions: 1
Published: over 6 years ago

10.1002/pro.3746

VarSite: Disease variants and protein structure
Cited by: 67
Author(s): Roman A. Laskowski, James Stephenson, Ian Sillitoe, Christine A. Orengo, Janet M. Thornton
Software Mentions: 1
Published: over 6 years ago

10.1002/pro.2896

On the satisfaction of backbone-carbonyl lone pairs of electrons in protein structures
Cited by: 21
Author(s): Gail J. Bartlett, Derek N. Woolfson
Software Mentions: 1
Published: over 10 years ago

10.1002/pro.3797

Type I fatty acid synthase trapped in the octanoyl‐bound state
Cited by: 22
Author(s): Alexander Rittner, Karthik S. Paithankar, Aaron Himmler, Martin Grininger
Software Mentions: 1
Published: over 6 years ago

10.1002/pro.3083

Oligomerization domains in the glycan-binding receptors DC-SIGN and DC-SIGNR: Sequence variation and stability differences
Cited by: 8
Author(s): Ália dos Santos, Andreas Hadjivasiliou, Felipe Ossa, Novandy K. Lim, Aylin Turgut, Maureen E. Taylor, Kurt Drickamer
Software Mentions: 1
Published: over 9 years ago

10.1002/pro.3820

Structure of the BRK domain of the SWI/SNF chromatin remodeling complex subunit BRG1 reveals a potential role in protein–protein interactions
Cited by: 16
Author(s): Jennifer Allen, Mark Bycroft, Giovanna Zinzalla
Software Mentions: 1
Published: over 6 years ago

10.1002/pro.3904

Cryo‐electron microscopy structure of <scp>CLHM1</scp> ion channel from <scp> Caenorhabditis elegans </scp>
Cited by: 9
Author(s): Wanxia Yang, Youwang Wang, Jing Guo, Lingli He, Ye Zhou, Hui Zheng, Zhongfan Liu, Ping Zhu, Xuejun C. Zhang
Software Mentions: 1
Published: about 6 years ago

10.1002/pro.3305

Crystal structure of the Legionella pneumophila Lpg2936 in complex with the cofactor S-adenosyl-L-methionine reveals novel insights into the mechanism of RsmE family methyltransferases
Cited by: 6
Author(s): Nikos Pinotsis, Gabriel Waksman
Software Mentions: 1
Published: over 8 years ago

10.1002/pro.3902

<scp>PyXlinkViewer</scp>: A flexible tool for visualization of protein chemical crosslinking data within the <scp>PyMOL</scp> molecular graphics system
Cited by: 45
Author(s): Bob Schiffrin, Sheena E. Radford, David J. Brockwell, Antonio N. Calabrese
Software Mentions: 1
Published: about 6 years ago

10.1002/pro.3970

The <scp>AbDesign</scp> computational pipeline for modular backbone assembly and design of binders and enzymes
Cited by: 14
Author(s): Rosalie Lipsh‐Sokolik, Dina Listov, Sarel J. Fleishman
Software Mentions: 1
Published: over 5 years ago

10.1002/pro.4064

Extension of a de novo TIM barrel with a rationally designed secondary structure element
Cited by: 6
Author(s): Jonas Gregor Wiese, S. Shanmugaratnam, Birte Höcker
Software Mentions: 1
Published: over 5 years ago

10.1002/prot.23011

Revisiting gap locations in amino acid sequence alignments and a proposal for a method to improve them by introducing solvent accessibility
Cited by: 25
Author(s): Atsushi Hijikata, Kei Yura, Tosiyuki Noguti, Mitiko Ḡo
Software Mentions: 1
Published: over 15 years ago

10.1002/prot.23118

A genetically encoded, high‐signal‐to‐noise maltose sensor
Cited by: 88
Author(s): Jonathan S. Marvin, Eric R. Schreiter, Ileabett Echevarría, Loren L. Looger
Software Mentions: 1
Published: almost 15 years ago

10.1002/prot.25805

Target highlights in CASP13: Experimental target structures through the eyes of their authors
Cited by: 10
Author(s): Rosalba Lepore, Andriy Kryshtafovych, Markus Alahuhta, Harshul Arora Verasztó, Yannick J. Bomble, J.C. Bufton, Alex N. Bullock, Cody Caba, Heidi B. Cao, Owen R. Davies, Ambroise Desfosses, Matthew Dunne, Krzysztof Fidelis, Celia W. Goulding, Manickam Gurusaran, Irina Gutsche, Christopher John Harding, M.D. Hartmann, Christopher S. Hayes, A. Joachimiak, P.G. Leiman, P. Loppnau, Andrew L. Lovering, В.В. Лунин, K. Michalska, Ignacio Mir‐Sanchis, Alok K. Mitra, John Moult, George N. Phillips, Daniel Pinkas, Phoebe A. Rice, Yufeng Tong, Maya Topf, Jonathan D. Walton, Torsten Schwede
Software Mentions: 1
Published: almost 7 years ago

10.1002/prot.25770

An NMR and MD study of complexes of bacteriophage lambda lysozyme with tetra‐ and hexa‐N‐acetylchitohexaose
Cited by: 3
Author(s): Ayşegül Turupcu, Alice M. Bowen, Alexandre Di Paolo, André Matagne, Chris Oostenbrink, Christina Redfield, Lorna J. Smith
Software Mentions: 1
Published: almost 7 years ago

10.1002/prot.24318

Molecular function prediction for a family exhibiting evolutionary tendencies toward substrate specificity swapping: Recurrence of tyrosine aminotransferase activity in the Iα subfamily
Cited by: 6
Author(s): Kathryn E. Muratore, Barbara E. Engelhardt, John R. Srouji, Michael I. Jordan, Steven E. Brenner, Jack F. Kirsch
Software Mentions: 1
Published: about 13 years ago

10.1002/prot.24377

Evaluation of predictions in the CASP10 model refinement category
Cited by: 97
Author(s): Timothy Nugent, Domenico Cozzetto, David T. Jones
Software Mentions: 1
Published: over 12 years ago

10.1186/1477-5956-9-27

Clinical and Technical Phosphoproteomic Research
Cited by: 17
Author(s): Elena López, I. López, Antônio Walter Ferreira, Julia Sequí
Software Mentions: 1
Published: over 15 years ago

10.14800/rd.1336

DEAH-RHA helicase•Znf cofactor systems in kinetoplastid RNA editing and evolutionarily distant RNA processes
Cited by: 3
Author(s): Jorge Cruz‐Reyes, Blaine H. M. Mooers, Zakaria Abu-Adas, Vijoy Kumar, Shelly Gulati
Software Mentions: 1
Published: about 10 years ago

10.1039/c9cb00017h

A mechanism-inspired UDP-N-acetylglucosamine pyrophosphorylase inhibitor
Cited by: 15
Author(s): O.G. Raimi, R. Hurtado‐Guerrero, Vladimir S. Borodkin, Andrew T. Ferenbach, Michael D. Urbaniak, Michael A. J. Ferguson, Daan M. F. van Aalten
Software Mentions: 1
Published: over 6 years ago

10.1039/d0cb00229a

Mapping the energy landscape of protein–ligand binding via linear free energy relationships determined by protein NMR relaxation dispersion
Cited by: 3
Author(s): Olof Stenström, Carl Diehl, Kristofer Modig, Ulf J. Nilsson, Mikael Akke
Software Mentions: 1
Published: over 5 years ago

10.1039/d0cb00056f

Haemoglobin(βK120C)–albumin trimer as an artificial O2carrier with sufficient haemoglobin allostery
Cited by: 6
Author(s): Yoshitsugu Morita, Asuka Saito, Jun Yamaguchi, Teruyuki Komatsu
Software Mentions: 1
Published: over 6 years ago

10.1098/rsos.140120

Structures of pyruvate kinases display evolutionarily divergent allosteric strategies
Cited by: 20
Author(s): Hugh P. Morgan, Weiguo Zhong, I.W. McNae, Paul A.M. Michels, Linda A. Fothergill‐Gilmore, Malcolm D. Walkinshaw
Software Mentions: 1
Published: almost 12 years ago

10.1098/rsos.160112

Orientation of tyrosine side chain in neurotoxic Aβ differs in two different secondary structures of the peptide
Cited by: 7
Author(s): Swagata Das, Supriya Das, Anupam Roy, Samir Kumar Pal, Nakul C. Maiti
Software Mentions: 1
Published: almost 10 years ago

10.1098/rsos.171059

Mechanistic insights into molecular evolution of species-specific differential glycosaminoglycan binding surfaces in growth-related oncogene chemokines
Cited by: 12
Author(s): Khushboo Gulati, Minal Jamsandekar, Krishna Mohan Poluri
Software Mentions: 1
Published: almost 9 years ago

10.1098/rsos.201652

Screening of anti- Acinetobacter baumannii phytochemicals, based on the potential inhibitory effect on OmpA and OmpW functions
Cited by: 8
Author(s): Shahab Shahryari, Parvin Mohammadnejad, Kambiz Akbari Noghabi
Software Mentions: 1
Published: almost 5 years ago

10.1515/raon-2015-0035

Gamma-enolase: a well-known tumour marker, with a less-known role in cancer
Cited by: 64
Author(s): Tjaša Vižin, Janko Kos
Software Mentions: 1
Published: almost 11 years ago

10.1016/j.redox.2018.08.007

Cholesterol secosterol aldehyde adduction and aggregation of Cu,Zn-superoxide dismutase: Potential implications in ALS
Cited by: 19
Author(s): Lucas S. Dantas, Adriano B. Chaves‐Filho, Fernando Rodrigues Coelho, Thiago C. Genaro-Mattos, Keri A. Tallman, Ned A. Porter, Ohára Augusto, Sayuri Miyamoto
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.redox.2018.101079

Mitochondrial Sco proteins are involved in oxidative stress defense
Cited by: 20
Author(s): Aslihan Ekim Kocabey, Luise Kost, Maria Gehlhar, Gerhard Rödel, Uta Gey
Software Mentions: 1
Published: over 7 years ago

10.1016/j.redox.2019.101179

Using resonance synchronous spectroscopy to characterize the reactivity and electrophilicity of biologically relevant sulfane sulfur
Cited by: 26
Author(s): Huanjie Li, Huaiwei Liu, Zhigang Chen, Rui Zhao, Qingda Wang, Mingxue Ran, Yongzhen Xia, Xin Hu, Jihua Liu, Ming Xian, Luying Xun
Software Mentions: 1
Published: about 7 years ago

10.1016/j.redox.2019.101213

Redox properties and human serum albumin binding of nitro-oleic acid
Cited by: 14
Author(s): Martina Zatloukalová, Miloš Mojović, Aleksandra Pavićević, Martin Kabeláč, Bruce Α. Freeman, Michaela Pekarová, Jan Vacek
Software Mentions: 1
Published: about 7 years ago

10.1038/srep38710

NMR studies on the interactions between yeast Vta1 and Did2 during the multivesicular bodies sorting pathway
Cited by: 2
Author(s): Jie Shen, Zhuo Yang, Jiaolong Wang, Bin Zhao, Wenxian Lan, Handong Wang, Xu Zhang, Cody J. Wild, Maili Liu, Zhaohui Xu, Chunyang Cao
Software Mentions: 1
Published: over 9 years ago

10.1038/srep38413

Probing the role of cation-π interaction in the thermotolerance and catalytic performance of endo-polygalacturonases
Cited by: 10
Author(s): Tao Tu, Yeqing Li, Xiaoyun Su, Kun Meng, Rui Ma, Yuan Wang, Bin Yao, Zhemin Lin, Huiying Luo
Software Mentions: 1
Published: over 9 years ago

10.1038/srep38031

Functional and structural characterization of a novel putative cysteine protease cell wall-modifying multi-domain enzyme selected from a microbial metagenome
Cited by: 10
Author(s): Muhammad Faheem, Diogo Martins-de-Sa, Julia Freitas Daltro Vidal, Alice Cunha Morales Álvares, J. Brandão-Neto, Louise E. Bird, Mark D. Tully, Frank von Delft, Betulia M. Souto, Betânia Ferraz Quirino, Sônia Maria de Freitas, J.A.R.G. Barbosa
Software Mentions: 1
Published: over 9 years ago

10.1038/srep38121

Chickpea transcription factor CaTLP1 interacts with protein kinases, modulates ROS accumulation and promotes ABA-mediated stomatal closure
Cited by: 12
Author(s): Vijay Wardhan, Ashish Pandey, Subhra Chakraborty, Niranjan Chakraborty
Software Mentions: 1
Published: over 9 years ago

10.1038/srep39010

The Identification and Characterization of Two Novel Epitopes on the Nucleocapsid Protein of the Porcine Epidemic Diarrhea Virus
Cited by: 28
Author(s): Kang Wang, Chun Xie, Jianan Zhang, Wenchao Zhang, Dong Yang, Lingxue Yu, Yifeng Jiang, Yang Shen, Fei Gao, Yang Zhou, Yue Zhou, Guangzhi Tong
Software Mentions: 1
Published: over 9 years ago

10.1038/srep35915

The Crystal Structure of Monovalent Streptavidin
Cited by: 11
Author(s): Min Zhang, Sanjib Biswas, Wenbin Deng, Hongjun Yu
Software Mentions: 1
Published: over 9 years ago

10.1038/srep40165

The mechanism of catalysis by type-II NADH:quinone oxidoreductases
Cited by: 44
Author(s): James N. Blaza, Hannah R. Bridges, D. Aragão, Elyse Dunn, Adam Heikal, Gregory M. Cook, Yoshio Nakatani, Judy Hirst
Software Mentions: 1
Published: over 9 years ago

10.1038/srep40292

X-ray Structure and Enzymatic Activity Profile of a Core Papain-like Protease of MERS Coronavirus with utility for structure-based drug design
Cited by: 34
Author(s): Jozlyn R. Clasman, Yahira M. Báez-Santos, Robert C. Mettelman, Amornrat O’Brien, Susan C. Baker, Andrew D. Mesecar
Software Mentions: 1
Published: over 9 years ago

10.1038/srep40675

Single PA mutation as a high yield determinant of avian influenza vaccines
Cited by: 7
Author(s): Ilseob Lee, Sang Hyun Kim, Sehee Park, Jin‐Young Bae, Kyoung Shin Yoo, Soo Hyeon Yun, Joo Yeon Lee, Kisoon Kim, Chun Kang, Man Seong Park
Software Mentions: 1
Published: over 9 years ago

10.1038/srep40801

The Matrix protein M1 from influenza C virus induces tubular membrane invaginations in an in vitro cell membrane model
Cited by: 20
Author(s): David Saletti, Jens Radzimanowski, Grégory Effantin, Daniel Midtvedt, Stéphanie Mangenot, Winfríed Weissenhorn, Patricia Bassereau, Marta Bally
Software Mentions: 1
Published: over 9 years ago

10.1038/srep41329

Computational predictors fail to identify amino acid substitution effects at rheostat positions
Cited by: 42
Author(s): Max J. Miller, Yana Bromberg, Liskin Swint‐Kruse
Software Mentions: 1
Published: over 9 years ago

10.1038/srep41783

Polymorphism of apyrimidinic DNA structures in the nucleosome
Cited by: 9
Author(s): Akihisa Osakabe, Yasuhiro Arimura, Sakuya Matsumoto, Naoki Horikoshi, Kaoru Sugasawa, Hitoshi Kurumizaka
Software Mentions: 1
Published: over 9 years ago

10.1038/srep41002

Development of a human vasopressin V1a-receptor antagonist from an evolutionary-related insect neuropeptide
Cited by: 34
Author(s): Maria Giulia Di Giglio, Markus Muttenthaler, Kasper Harpsøe, Zita Liutkevičiūtė, Peter Keov, Thomas Eder, Thomas Rattei, Sarah Arrowsmith, Susan Wray, Aleš Marek, Tomáš Elbert, Paul F. Alewood, David E. Gloriam, Christian W. Gruber
Software Mentions: 1
Published: over 9 years ago

10.1038/srep41811

New Insights on Signal Propagation by Sensory Rhodopsin II/Transducer Complex
Cited by: 23
Author(s): Andrii Ishchenko, Ekaterina Round, Valentin Borshchevskiy, Sergei Grudinin, Ivan Gushchin, Johann P. Klare, Alina Remeeva, Vitaly Polovinkin, P. Utrobin, Taras Balandin, Martin Engelhard, Georg Büldt, Valentin Gordeliy
Software Mentions: 1
Published: over 9 years ago

10.1038/srep41996

Structural insights into human angiogenin variants implicated in Parkinson’s disease and Amyotrophic Lateral Sclerosis
Cited by: 33
Author(s): W.J. Bradshaw, Saima Rehman, Thuy Thi Thu Pham, N. Thiyagarajan, Rebecca L. Lee, Vasanta Subramanian, K. Ravi Acharya
Software Mentions: 1
Published: over 9 years ago

10.1038/srep41751

Quantification of Detergents Complexed with Membrane Proteins
Cited by: 58
Author(s): Vincent Chaptal, Frédéric Delolme, Arnaud Kilburg, Sandrine Magnard, Cédric Montigny, Martin Picard, Charlène Prier, Luca Monticelli, Olivier Bornert, Morgane Agez, Stéphanie Ravaud, Cédric Orelle, Renaud Wagner, Anass Jawhari, Isabelle Broutin, Eva Pebay‐Peyroula, Jean‐Michel Jault, H. Ronald Kaback, Marc le Maire, Pierre Falson
Software Mentions: 1
Published: over 9 years ago

10.1038/srep41772

Involvement of β-defensin 130 (DEFB130) in the macrophage microbicidal mechanisms for killing Plasmodium falciparum
Cited by: 9
Author(s): Mohamad Alaa Terkawi, Ryo Takano, Akinori Furukawa, Fumi Murakoshi, Kentaro Kato
Software Mentions: 1
Published: over 9 years ago

10.1038/srep42494

Arabidopsis thaliana dehydroascorbate reductase 2: Conformational flexibility during catalysis
Cited by: 11
Author(s): Nandita Bodra, Diana Young, Leonardo Astolfi Rosado, Anna Palló, Khadija Wahni, Frank De Proft, Jingjing Huang, Frank Van Breusegem, Joris Messens
Software Mentions: 1
Published: over 9 years ago

10.1038/srep42671

Mechanistic insight into the substrate specificity of 1,2-β-oligoglucan phosphorylase from Lachnoclostridium phytofermentans
Cited by: 20
Author(s): Masahiro Nakajima, Norihiro Tanaka, Naomichi Furukawa, Takanori Nihira, Y. Kodutsumi, Yuta Takahashi, Norihiko Sugimoto, Akimasa Miyanaga, Shinya Fushinobu, Hayao Taguchi, Hiroyuki Nakai
Software Mentions: 1
Published: over 9 years ago

10.1038/srep43043

Membrane targeting of TIRAP is negatively regulated by phosphorylation in its phosphoinositide-binding motif
Cited by: 14
Author(s): Xiaolin Zhao, Wen Xiong, S. Y. Xiao, Tuo-Xian Tang, Jeffrey F. Ellena, Geoffrey S. Armstrong, Carla V. Finkielstein, Daniel G. S. Capelluto
Software Mentions: 1
Published: over 9 years ago

10.1038/srep43290

Hyodeoxycholic acid derivatives as liver X receptor α and G-protein-coupled bile acid receptor agonists
Cited by: 27
Author(s): Simona De Marino, Adriana Carino, Dario Masullo, Claudia Finamore, Silvia Marchianò, Sabrina Cipriani, Francesco Saverio Di Leva, Bruno Catalanotti, Ettore Novellino, Vittorio Limongelli, Stefano Fiorucci, Angela Zampella
Software Mentions: 1
Published: over 9 years ago

10.1038/srep43398

Discovery and Optimization of Novel 5-Indolyl-7-arylimidazo[1,2-a]pyridine-8-carbonitrile Derivatives as Potent Antitubulin Agents Targeting Colchicine-binding Site
Cited by: 12
Author(s): Xin Zhai, Xiaoqiang Wang, Jiao Wang, Jin Liu, Daiying Zuo, Nan Jiang, Tianfang Zeng, Xiuxiu Yang, Tongfei Jing, Ping Gong
Software Mentions: 1
Published: over 9 years ago

10.1038/srep43906

Molecular basis for the role of oncogenic histone mutations in modulating H3K36 methylation
Cited by: 54
Author(s): Yinglu Zhang, Chun-Min Shan, Jiyong Wang, Kehan Bao, Liang Tong, Songtao Jia
Software Mentions: 1
Published: over 9 years ago

10.1038/srep43935

Inhibition of PHD3 by salidroside promotes neovascularization through cell–cell communications mediated by muscle-secreted angiogenic factors
Cited by: 31
Author(s): Jing Zhang, Vivi Kasim, Yudan Xie, Can Huang, Julita Sisjayawan, Agnes Dwi Ariyanti, Xue-Song Yan, Xiaoyan Wu, Caiping Liu, Li Yang, Makoto Miyagishi, Shourong Wu
Software Mentions: 1
Published: over 9 years ago

10.1038/srep44029

The Adhesion of Lactobacillus salivarius REN to a Human Intestinal Epithelial Cell Line Requires S-layer Proteins
Cited by: 24
Author(s): Ran Wang, Libin Jiang, Ming Zhang, Liang Zhao, Yanling Hao, Huiyuan Guo, Yue Sang, Hao Zhang, Fazheng Ren
Software Mentions: 1
Published: over 9 years ago

10.1038/srep44278

Killing of Staphylococcus aureus and Salmonella enteritidis and neutralization of lipopolysaccharide by 17-residue bovine lactoferricins: improved activity of Trp/Ala-containing molecules
Cited by: 18
Author(s): Ya Hao, Na Yang, Xiumin Wang, Da Teng, Ruoyu Mao, Xiao Wang, Zhanzhan Li, Jianhua Wang
Software Mentions: 1
Published: over 9 years ago

10.1038/srep44751

A conserved inter-domain communication mechanism regulates the ATPase activity of the AAA-protein Drg1
Cited by: 4
Author(s): Michael Prattes, Mathias Loibl, Gertrude Zisser, Daniel Luschnig, Lisa Kappel, Ingrid Rössler, Manuela Grassegger, Altijana Hromic, Elmar Krieger, Karl Gruber, Brigitte Pertschy, Helmut Bergler
Software Mentions: 1
Published: over 9 years ago

10.1038/srep44779

Identification of cancer-associated missense mutations in hace1 that impair cell growth control and Rac1 ubiquitylation
Cited by: 20
Author(s): Emilie Andrio, Romain Lotte, Daniel Hamaoui, Jacqueline Cherfils, Anne Doye, Mads Daugaard, Poul H. Sorensen, Fréd́eric Bost, Raymond Ruimy, Amel Mettouchi, Emmanuel Lemichez
Software Mentions: 1
Published: over 9 years ago

10.1038/srep45020

Rassf Proteins as Modulators of Mst1 Kinase Activity
Cited by: 22
Author(s): A. Bitra, Srinivas Sistla, Jessy Mariam, Harshada Malvi, Ruchi Anand
Software Mentions: 1
Published: over 9 years ago

10.1038/srep45089

Isolation and characterization of the E. coli membrane protein production strain Mutant56(DE3)
Cited by: 36
Author(s): Thomas Baumgarten, Susan Schlegel, Samuel Wagner, Mirjam Löw, Jonas Eriksson, Ida Bonde, Markus J. Herrgård, Hermann J. Heipieper, Morten H. H. Nørholm, Dirk Jan Slotboom, Jan‐Willem de Gier
Software Mentions: 1
Published: over 9 years ago

10.1038/srep44709

Cavity filling mutations at the thyroxine-binding site dramatically increase transthyretin stability and prevent its aggregation
Cited by: 14
Author(s): Ricardo Sant’Anna, Maria Rosário Almeida, Nathalia Varejão, Pablo Gallego, Sebastián Esperante, Priscila S. Ferreira, Alda Pereira-Henriques, Fernando L. Palhano, Mamede de Carvalho, Débora Foguel, David Reverter, Maria João Saraiva, Salvador Ventura
Software Mentions: 1
Published: over 9 years ago

10.1038/srep45540

NMDA receptor antagonism with novel indolyl, 2-(1,1-Dimethyl-1,3-dihydro-benzo[e]indol-2-ylidene)-malonaldehyde, reduces seizures duration in a rat model of epilepsy
Cited by: 16
Author(s): Hussin A. Rothan, Elham Amini, Fadihl L. Faraj, Mojtaba Golpich, Teow Chong Teoh, Khadijeh Gholami, Rohana Yusof
Software Mentions: 1
Published: over 9 years ago

10.1038/srep45627

Novel conjugates of aminoadamantanes with carbazole derivatives as potential multitarget agents for AD treatment
Cited by: 52
Author(s): С. О. Бачурин, E. F. Shevtsova, Галина Ф. Махаева, V. V. Grigoriev, Natalia P. Boltneva, N. V. Kovaleva, Sofya V. Lushchekina, P. N. Shevtsov, Margarita E. Neganova, Olga Redkozubova, Elena Bovina, A. V. Gabrel’yan, Владимир Петрович Фисенко, В. Б. Соколов, А. Yu. Aksinenko, Valentina Echeverrı́a, George E. Barreto, Gjumrakch Aliev
Software Mentions: 1
Published: over 9 years ago

10.1038/srep45643

Carbon nanotube filled with magnetic iron oxide and modified with polyamidoamine dendrimers for immobilizing lipase toward application in biodiesel production
Cited by: 55
Author(s): Yanli Fan, Feng Su, Kai Li, Changbin Ke, Yunjun Yan
Software Mentions: 1
Published: over 9 years ago

10.1038/srep45701

Discovery of the first dual GSK3β inhibitor/Nrf2 inducer. A new multitarget therapeutic strategy for Alzheimer’s disease
Cited by: 53
Author(s): Isabel Gameiro, Patrycja Michalska, Giammarco Tenti, Ángel Cores, Izaskun Buendía, Ana I. Rojo, Nikolaos Georgakopoulos, Jesús M. Hernández‐Guijo, M. Teresa Ramos, G Margaret Wells, Manuela G. López, Antonio Cuadrado, J. Carlos Menéndez, Rafael León
Software Mentions: 1
Published: over 9 years ago

10.1038/srep46005

Structural insights into the production of 3-hydroxypropionic acid by aldehyde dehydrogenase from Azospirillum brasilense
Cited by: 15
Author(s): Hyeoncheol Francis Son, Sunghoon Park, Tae Hyeon Yoo, Gyoo Yeol Jung, Kyungjin Kim
Software Mentions: 1
Published: over 9 years ago

10.1038/srep46045

Allosteric inhibition of aminopeptidase N functions related to tumor growth and virus infection
Cited by: 23
Author(s): César Santiago, Gaurav Mudgal, Juan Reguera, Rosario Recacha, Sébastien Albrecht, Luis Enjuanes, José M. Casasnovas
Software Mentions: 1
Published: over 9 years ago

10.1038/srep46282

The structure of Lactococcus lactis thioredoxin reductase reveals molecular features of photo-oxidative damage
Cited by: 9
Author(s): Nicklas Skjoldager, M.B. Bang, Martin Rykær, Olof Björnberg, Michael J. Davies, Birte Svensson, Pernille Harris, Per Hägglund
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-00188-7

Tryptophan end-tagging for promoted lipopolysaccharide interactions and anti-inflammatory effects
Cited by: 12
Author(s): Shalini Singh, Aritreyee Datta, Artur Schmidtchen, Anirban Bhunia, Martin Malmsten
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-00767-8

Structural Insight into the Specific DNA Template Binding to DnaG primase in Bacteria
Cited by: 11
Author(s): Yingqin Zhou, Haiyun Luo, Zhongchuan Liu, Mu Yang, Xiaoyun Pang, Fei Sun, Ganggang Wang
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-00764-x

Modelling the three-dimensional structure of the right-terminal domain of pospiviroids
Cited by: 8
Author(s): Gerhard Steger
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-00954-7

Interplay of buried histidine protonation and protein stability in prion misfolding
Cited by: 15
Author(s): Anatoly Malevanets, P. Andrew Chong, D. Flemming Hansen, Paul Rizk, Yulong Sun, Hong Lin, Ranjith Muhandiram, Avijit Chakrabartty, Lewis E. Kay, Julie D. Forman-Kay, Shoshana J. Wodak
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-01049-z

The GPR139 reference agonists 1a and 7c, and tryptophan and phenylalanine share a common binding site
Cited by: 21
Author(s): Anne Cathrine Nøhr, Willem Jespers, Mohamed A. Shehata, Leonard Floryan, Vignir Ísberg, Knud Erik Andersen, Johan Åqvist, Hugo Gutiérrez‐de‐Terán, Hans Bräuner‐Osborne, David E. Gloriam
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-01087-7

Long lasting neutralization of C5 by SKY59, a novel recycling antibody, is a potential therapy for complement-mediated diseases
Cited by: 69
Author(s): Taku Fukuzawa, Zenjiro Sampei, Kenta Haraya, Yoshinao Ruike, Meiri Shida-Kawazoe, Yuichiro Shimizu, Siok Wan Gan, Masayasu Irie, Yoshinori Tsuboi, Hitoshi Tai, Tetsushi Sakiyama, Akihisa Sakamoto, Shinya Ishii, Atsuhiko Maeda, Yuki Iwayanagi, Norihito Shibahara, Mitsuko Shibuya, Gisaku Nakamura, Takeru Nambu, Akira Hayasaka, Futa Mimoto, Yuu Okura, Yuji Hori, Kiyoshi Habu, Manabu Wada, Takaaki Miura, Tatsuhiko Tachibana, Kazuo Honda, Hiroyuki Tsunoda, Takio Kitazawa, Yojiro Kawabe, Tomoyuki Igawa, Kunihiro Hattori, Jun-ichi Nezu
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-01497-7

Blue-light reception through quaternary transitions
Cited by: 21
Author(s): Christopher Engelhard, Ralph P. Diensthuber, Andreas Möglich, Robert Bittl
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-01491-z

Hydration effects on the efficacy of the Epidermal growth factor receptor kinase inhibitor afatinib
Cited by: 15
Author(s): Srinivasaraghavan Kannan, Mohan R. Pradhan, Garima Tiwari, Wei-Chong Tan, Balram Chowbay, Eng Huat Tan, Daniel Shao-Weng Tan, Chandra Verma
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-01880-4

Symmetry breaking during homodimeric assembly activates an E3 ubiquitin ligase
Cited by: 18
Author(s): Zhaofeng Ye, Patrick G. Needham, Samuel K. Estabrooks, Susan K. Whitaker, Brandon L. Garcia, Saurav Misra, Jeffrey L. Brodsky, Carlos J. Camacho
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-02219-9

Crystal structure of TAZ-TEAD complex reveals a distinct interaction mode from that of YAP-TEAD complex
Cited by: 72
Author(s): Hung Yi Kristal Kaan, Siew Wee Chan, Siew Kim Joyce Tan, Feng Guo, Chun Jye Lim, Wanjin Hong, Haiwei Song
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-02322-x

The molecular determinants for distinguishing between ubiquitin and NEDD8 by USP2
Cited by: 8
Author(s): Yung-Cheng Shin, Jou-Han Chen, Shih‐Chung Chang
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-02677-1

Probing the Roles of Calcium-Binding Sites during the Folding of Human Peptidylarginine Deiminase 4
Cited by: 15
Author(s): Yiliang Liu, Chien-Yun Lee, Yu-Ni Huang, Huiyi Chen, Guang‐Yaw Liu, Hui‐Chih Hung
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-01737-w

In silico analyses of deleterious missense SNPs of human apolipoprotein E3
Cited by: 24
Author(s): Állan S. Pires, William F. Porto, Octávio L. Franco, Sérgio Amorim de Alencar
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-02489-3

A Benzothiazole Derivative (5g) Induces DNA Damage And Potent G2/M Arrest In Cancer Cells
Cited by: 20
Author(s): Mahesh Hegde, Supriya V. Vartak, C. Kavitha, Hanumappa Ananda, Prasanna D. Shivaramu, Vidya Gopalakrishnan, Bibha Choudhary, Kanchugarakoppal S. Rangappa, Sathees C. Raghavan
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-02900-z

The malate sensing two-component system MaeKR is a non-canonical class of sensory complex for C4-dicarboxylates
Cited by: 5
Author(s): Laura Miguel-Romero, Patricia Casino, José María Landete, Vicente Monedero, Manuel Zúñiga, Alberto Marina
Software Mentions: 1
Published: about 9 years ago

Projects: pypi: PyMOL

Science Score: 90/100

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Papers Mentioning PyMOL 8,266