pypi: PyMOL | Projects | Ecosyste.ms: Papers

10.1038/srep09375

Enhanced photocurrent production by bio-dyes of photosynthetic macromolecules on designed TiO2 film
Cited by: 54
Author(s): Daoyong Yu, Mengfei Wang, Guangpu Zhu, Baosheng Ge, Shuang Liu, Fang Huang
Software Mentions: 1
Published: over 11 years ago

10.1038/srep09449

Structure and function of a Clostridium difficile sortase enzyme
Cited by: 22
Author(s): Christopher J. Chambers, April K. Roberts, Clifford C. Shone, K. Ravi Acharya
Software Mentions: 1
Published: over 11 years ago

10.1038/srep09641

Ryanodine receptors are targeted by anti-apoptotic Bcl-XL involving its BH4 domain and Lys87 from its BH3 domain
Cited by: 30
Author(s): Tim Vervliet, Irma Lemmens, Elien Vandermarliere, Elke Decrock, Hristina Ivanova, Giovanni Monaco, Vincenzo Sorrentino, Nael Nadif Kasri, Ludwig Missiaen, Lennart Martens, Humbert De Smedt, Luc Leybaert, Jan B. Parys, Jan Tavernier, Geert Bultynck
Software Mentions: 1
Published: over 11 years ago

10.1038/srep10447

Structural and functional characterization of a novel scFv anti-HSP60 of Strongyloides sp.
Cited by: 16
Author(s): Marcelo Arantes Levenhagen, Francisco Abad Santos, Patrícia Tiemi Fujimura, Ana Paula Caneiro, Julia Maria Costa‐Cruz, Luiz Ricardo Goulart
Software Mentions: 1
Published: about 11 years ago

10.1038/srep11581

Structural and Physical Basis for Anti-IgE Therapy
Cited by: 40
Author(s): Jon D. Wright, Hsing-Mao Chu, Chun‐Hsiang Huang, Che Ma, Tse Wen Chang, Carmay Lim
Software Mentions: 1
Published: about 11 years ago

10.1038/srep11629

Highly homologous proteins exert opposite biological activities by using different interaction interfaces
Cited by: 10
Author(s): Anat Amir, Martijn van Rosmalen, Guy Mayer, Mario Lebendiker, Tsafi Danieli, Assaf Friedler
Software Mentions: 1
Published: about 11 years ago

10.1038/srep11648

Molecular evolution of haemagglutinin (H) gene in measles virus
Cited by: 32
Author(s): Hirokazu Kimura, Masaaki Saitoh, Miho Kobayashi, Haruyuki Ishii, Takeshi Saraya, Daisuke Kurai, Hiroyuki Tsukagoshi, Komei Shirabe, Atsuyoshi Nishina, Kunihisa Kozawa, Makoto Kuroda, Fumihiko Takeuchi, Tsuyoshi Sekizuka, Hisanori Minakami, Akihide Ryo, Makoto Takeda
Software Mentions: 1
Published: about 11 years ago

10.1038/srep10270

Optimizing fluorescent protein trios for 3-Way FRET imaging of protein interactions in living cells
Cited by: 21
Author(s): Brandon L. Scott, Adam D. Hoppe
Software Mentions: 1
Published: about 11 years ago

10.1038/srep11674

Crystal Structures of a Hyperthermophilic Archaeal Homoserine Dehydrogenase Suggest a Novel Cofactor Binding Mode for Oxidoreductases
Cited by: 14
Author(s): Junji Hayashi, Shota Inoue, Kwang Jin Kim, Kazunari Yoneda, Yutaka Kawarabayasi, Toshihisa Ohshima, Haruhiko Sakuraba
Software Mentions: 1
Published: about 11 years ago

10.1038/srep12052

Ortho-methylated 3-hydroxypyridines hinder hen egg-white lysozyme fibrillogenesis
Cited by: 16
Author(s): Luca Marino, Kris Pauwels, Rodrigo Casasnovas, Pilar Sanchís, Bartolomé Vilanova, Francisco Muñoz, Josefa Donoso, Miquel Adrover
Software Mentions: 1
Published: about 11 years ago

10.1038/srep12583

Molecular mechanisms of the non-coenzyme action of thiamin in brain: biochemical, structural and pathway analysis
Cited by: 90
Author(s): Garik Mkrtchyan, Vasily A. Aleshin, Yu. M. Parkhomenko, Thilo Kaehne, Martino L. di Salvo, Alessia Parroni, Roberto Contestabile, А. I. Vovk, Lucien Bettendorff, Victoria I. Bunik
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep12905

Conserved features in TamA enable interaction with TamB to drive the activity of the translocation and assembly module
Cited by: 31
Author(s): Joel Selkrig, Matthew J. Belousoff, Stephen J. Headey, Eva Heinz, Takuya Shiota, Hsin‐Hui Shen, Simone A. Beckham, Rebecca S. Bamert, Minh-Duy Phan, Mark A. Schembri, Matthew C. J. Wilce, M.J. Scanlon, Richard A. Strugnell, Trevor Lithgow
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep13038

Two single amino acid substitutions in the intervening region of Newcastle disease virus HN protein attenuate viral replication and pathogenicity
Cited by: 12
Author(s): Bin Liu, Yanhong Ji, Lin Zheng, Yue Fu, Rihab Muhammad Dafallah, Qing Zhu
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep12828

Changes to the dynamic nature of hemagglutinin and the emergence of the 2009 pandemic H1N1 influenza virus
Cited by: 9
Author(s): Sun‐Woo Yoon, Noam Chen, Mariette Ducatez, Ryan McBride, Subrata Barman, Thomas Fabrizio, Robert G. Webster, Türkan Haliloğlu, James C. Paulson, Charles J. Russell, Tomer Hertz, Nir Ben‐Tal, Richard J. Webby
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep13180

Investigation of Inhibition Mechanism of Chemokine Receptor CCR5 by Micro-second Molecular Dynamics Simulations
Cited by: 40
Author(s): Ramin Ekhteiari Salmas, Mine Yurtsever, Serdar Durdağı
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep13435

Engineering catechol 1, 2-dioxygenase by design for improving the performance of the cis, cis-muconic acid synthetic pathway in Escherichia coli
Cited by: 20
Author(s): Han Liang, Li Pi, Jixue Sun, Yuanqing Wu, Yuanyuan Zhang, Wujiu Chen, Jianping Lin, Qinhong Wang, Yanhe Ma
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep13586

Solution structure of the transmembrane domain of the mouse erythropoietin receptor in detergent micelles
Cited by: 19
Author(s): Qingxin Li, Yiik Diew Wong, Michelle Yueqi Lee, Yan Li, CongBao Kang
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep13397

Structural analysis of Clostridium botulinum neurotoxin type D as a platform for the development of targeted secretion inhibitors
Cited by: 12
Author(s): Geoffrey Masuyer, Jonathan Davies, Kevin B. Moore, John A. Chaddock, K. Ravi Acharya
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep13684

Combinatorial Pharmacophore Modeling of Multidrug and Toxin Extrusion Transporter 1 Inhibitors: a Theoretical Perspective for Understanding Multiple Inhibitory Mechanisms
Cited by: 15
Author(s): Xu Yue, Xian Liu, Yulan Wang, Nannan Zhou, Jiantang Peng, Likun Gong, Jing Ren, Cheng Luo, Xiaomin Luo, Hualiang Jiang, Kaixian Chen, Mingyue Zheng
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep13909

Structural basis of redox-dependent substrate binding of protein disulfide isomerase
Cited by: 28
Author(s): Maho Yagi-Utsumi, Tadashi Satoh, Koichi Kato
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep14086

The glucocorticoid mometasone furoate is a novel FXR ligand that decreases inflammatory but not metabolic gene expression
Cited by: 23
Author(s): Ingrid T.G.W. Bijsmans, Chiara Guercini, José M. Ramos Pittol, Wienand Omta, Alexandra Milona, Daphne Lelieveld, David A. Egan, Roberto Pellicciari, Antimo Gioiello, Saskia W.C. van Mil
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep14214

A structural dissection of large protein-protein crystal packing contacts
Cited by: 35
Author(s): Jiesi Luo, Zhongyu Liu, Yanzhi Guo, Menglong Li
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep14427

Arrhythmogenic effects of mutated L-type Ca2+-channels on an optogenetically paced muscular pump in Caenorhabditis elegans
Cited by: 17
Author(s): Christina Schüler, Ernst Fischer, Lior Shaltiel, Wagner Steuer Costa, Alexander Gottschalk
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep13742

Structural basis of Ac-SDKP hydrolysis by Angiotensin-I converting enzyme
Cited by: 17
Author(s): Geoffrey Masuyer, Ross G. Douglas, Edward D. Sturrock, K. Ravi Acharya
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep14669

Pre-amyloid oligomers of the proteotoxic RepA-WH1 prionoid assemble at the bacterial nucleoid
Cited by: 19
Author(s): María Moreno-del Álamo, Susana Moreno Dı́az de la Espina, M. Elena Fernández-Tresguerres, Rafael Giraldo
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep14733

USP15 regulates SMURF2 kinetics through C-lobe mediated deubiquitination
Cited by: 48
Author(s): Prasanna Vasudevan Iyengar, Patrick Jaynes, Laura Rodón, Dilraj Lama, KT Law, Yoon Pin Lim, Chandra Verma, Joan Seoane, Pieter J.A. Eichhorn
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep14973

Target-Driven Evolution of Scorpion Toxins
Cited by: 31
Author(s): Shangfei Zhang, Bin Gao, Shunyi Zhu
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep14836

Rational Design of Benzylidenehydrazinyl-Substituted Thiazole Derivatives as Potent Inhibitors of Human Dihydroorotate Dehydrogenase with in Vivo Anti-arthritic Activity
Cited by: 18
Author(s): Shiliang Li, Guoqin Luan, Xiaohu Ren, Wenlin Song, Liuxin Xu, Minghao Xu, Jia‐Ying Zhu, Dong Dong, Yanyan Diao, Xiaofeng Liu, Lili Zhu, Rui Wang, Zhenjiang Zhao, Yufang Xu, Honglin Li
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep15055

Structure of importin-α bound to a non-classical nuclear localization signal of the influenza A virus nucleoprotein
Cited by: 44
Author(s): Ryohei Nakada, Hidemi Hirano, Yasushi Matsuura
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep14990

Structural Analysis of the Pin1-CPEB1 interaction and its potential role in CPEB1 degradation
Cited by: 13
Author(s): Constanze Schelhorn, Pau Martin‐Malpartida, David Suñol, María J. Macias
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep15073

Crystal structural basis for Rv0315, an immunostimulatory antigen and inactive beta-1,3-glucanase of Mycobacterium tuberculosis
Cited by: 7
Author(s): Wanyu Dong, Junhua Huang, Yanan Li, Yubei Tan, Zhou Shen, Yinglin Song, Dan Wang, Shaobo Xiao, Huanchun Chen, Zhen F. Fu, Guiqing Peng
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep15660

New Insights into the RNA-Binding and E3 Ubiquitin Ligase Activities of Roquins
Cited by: 27
Author(s): Qi Zhang, Fan Li, Feng Hou, Aiping Dong, Yun Xing Wang, Yufeng Tong
Software Mentions: 1
Published: over 10 years ago

10.1038/srep15678

Identification of novel alleles of the rice blast resistance gene Pi54
Cited by: 35
Author(s): Kumar Vasudevan, Wilhelm Gruissem, Navreet K. Bhullar
Software Mentions: 1
Published: over 10 years ago

10.1038/srep15531

Sequence analysis, expression profiles and function of thioredoxin 2 and thioredoxin reductase 1 in resistance to nucleopolyhedrovirus in Helicoverpa armigera
Cited by: 12
Author(s): Songdou Zhang, Zhen Li, Xiaoge Nian, Fengming Wu, Zhizhang Shen, Boyu Zhang, Qingwen Zhang, Xiaoxia Liu
Software Mentions: 1
Published: over 10 years ago

10.1038/srep15859

Annexin A2 binds to endosomes and negatively regulates TLR4-triggered inflammatory responses via the TRAM-TRIF pathway
Cited by: 63
Author(s): Shuang Zhang, Min Yu, Qiang Guo, Rongpeng Li, Guo‐Bo Li, Shirui Tan, Xuefeng Li, Yuquan Wei, Min Wu
Software Mentions: 1
Published: over 10 years ago

10.1038/srep16076

Comparative genomics and experimental evolution of Escherichia coli BL21(DE3) strains reveal the landscape of toxicity escape from membrane protein overproduction
Cited by: 63
Author(s): Soon Kyeong Kwon, Seong Keun Kim, Dong Hoon Lee, Jihyun F. Kim
Software Mentions: 1
Published: over 10 years ago

10.1038/srep16198

Substrate recognition and catalysis by LytB, a pneumococcal peptidoglycan hydrolase involved in virulence
Cited by: 28
Author(s): Palma Rico-Lastres, Roberto Díez-Martínez, Manuel Iglesias-Bexiga, Noemí Bustamante, Christine Aldridge, Dušan Hesek, Mijoon Lee, Shahriar Mobashery, Joe Gray, Waldemar Vollmer, Pedro García, Margarita Menéndez
Software Mentions: 1
Published: over 10 years ago

10.1038/srep13829

Identification of residues important for substrate uptake in a glucose transporter from the filamentous fungus Trichoderma reesei
Cited by: 23
Author(s): Weixin Zhang, Yanli Cao, Jing Gong, Xinhe Bao, Guanjun Chen, Weifeng Liu
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep16520

Determinants of ligand binding and catalytic activity in the myelin enzyme 2′,3′-cyclic nucleotide 3′-phosphodiesterase
Cited by: 25
Author(s): Arne Raasakka, Matti Myllykoski, Saara Laulumaa, M. Lehtimaki, Michael Härtlein, Martine Moulin, Inari Kursula, Petri Kursula
Software Mentions: 1
Published: over 10 years ago

10.1038/srep16605

Structure-based drug design targeting the cell membrane receptor GPBAR1: exploiting the bile acid scaffold towards selective agonism
Cited by: 23
Author(s): Francesco Saverio Di Leva, Carmen Festa, Barbara Renga, Valentina Sepe, Ettore Novellino, Stefano Fiorucci, Angela Zampella, Vittorio Limongelli
Software Mentions: 1
Published: over 10 years ago

10.1038/srep16330

Structural basis of pyrimidine-pyrimidone (6–4) photoproduct recognition by UV-DDB in the nucleosome
Cited by: 39
Author(s): Akihisa Osakabe, Hiroaki Tachiwana, Wataru Kagawa, Naoki Horikoshi, Sakuya Matsumoto, Mayu Hasegawa, Naoyuki Matsumoto, Tatsuya Toga, Junpei Yamamoto, Fumio Hanaoka, Nicolas H. Thomä, Kaoru Sugasawa, Shigenori Iwai, Hitoshi Kurumizaka
Software Mentions: 1
Published: over 10 years ago

10.1038/srep10877

Characterization of two-step deglycosylation via oxidation by glycoside oxidoreductase and defining their subfamily
Cited by: 6
Author(s): Eun‐Mi Kim, Jung-Won Seo, Kiheon Baek, Byung‐Gee Kim
Software Mentions: 1
Published: about 11 years ago

10.1038/srep12754

Crystal structure of E. coli endonuclease V, an essential enzyme for deamination repair
Cited by: 11
Author(s): Zhemin Zhang, Qian Jia, Chun Zhou, Wei Xie
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep17296

A mechanism of glucose tolerance and stimulation of GH1 β-glucosidases
Cited by: 60
Author(s): Yang Yang, Xinxin Zhang, Qiang Yin, Wei Fang, Zemin Fang, Xiaotang Wang, Xuecheng Zhang, Yazhong Xiao
Software Mentions: 1
Published: over 10 years ago

10.1038/srep17341

Assembly of the MHC I peptide-loading complex determined by a conserved ionic lock-switch
Cited by: 19
Author(s): Andreas Blees, Katrin Reichel, Simon Trowitzsch, Olivier Fisette, Christoph Bock, Rupert Abele, Gerhard Hummer, Lars V. Schäfer, Robert Tampé
Software Mentions: 1
Published: over 10 years ago

10.1038/srep17298

Structural delineation of stem-loop RNA binding by human TAF15 protein
Cited by: 10
Author(s): Kashyap Maruthi, Akshay Kumar Ganguly, Neel Sarovar Bhavesh
Software Mentions: 1
Published: over 10 years ago

10.1038/srep16943

Crystal structure of CobK reveals strand-swapping between Rossmann-fold domains and molecular basis of the reduced precorrin product trap
Cited by: 7
Author(s): Shuang Gu, Oleksandr Sushko, Evelyne Deery, Martin J. Warren, Richard W. Pickersgill
Software Mentions: 1
Published: over 10 years ago

10.1038/srep17288

Selective targeting of nuclear receptor FXR by avermectin analogues with therapeutic effects on nonalcoholic fatty liver disease
Cited by: 37
Author(s): Lihua Jin, Rui Wang, Yujia Zhu, Weili Zheng, Han Yan, Feng Guo, Frank Bin Ye, Yong Li
Software Mentions: 1
Published: over 10 years ago

10.1038/srep17332

Neurodegenerative disease-associated mutants of a human mitochondrial aminoacyl-tRNA synthetase present individual molecular signatures
Cited by: 23
Author(s): Claude Sauter, Bernard Lorber, Agnès Gaudry, Loukmane Karim, Hagen Schwenzer, Frank Wien, Pierre Roblin, Catherine Florentz, Marie Sissler
Software Mentions: 1
Published: over 10 years ago

10.1038/srep17466

Resistance Mechanisms and Molecular Docking Studies of Four Novel QoI Fungicides in Peronophythora litchii
Cited by: 22
Author(s): Yuxin Zhou, Lei Chen, Jian Hu, Hongxia Duan, Dong Lin, Pengfei Liu, Qingyong Meng, Bin Li, SI Nai-guo, Changling Liu, Xili Liu
Software Mentions: 1
Published: over 10 years ago

10.1038/srep18167

Disassembly of the self-assembled, double-ring structure of proteasome α7 homo-tetradecamer by α6
Cited by: 23
Author(s): Kentaro Ishii, Masanori Noda, Hirokazu Yagi, Ratsupa Thammaporn, Supaphorn Seetaha, Tadashi Satoh, Koichi Kato, Susumu Uchiyama
Software Mentions: 1
Published: over 10 years ago

10.1038/srep18329

GFP-complementation assay to detect functional CPP and protein delivery into living cells
Cited by: 48
Author(s): Nadia Milech, Brooke Allison Cattell Longville, Paula Cunningham, Marie N. Scobie, Heique Marlis Bogdawa, Scott Winslow, Mark Anastasas, Theresa Connor, Ferrer Ong, Shane R. Stone, Maria Kerfoot, Tatjana Heinrich, Karen M. Kroeger, Yew‐Foon Tan, Katrin Hoffmann, Wayne R. Thomas, Paul M. Watt, R.M. Hopkins
Software Mentions: 1
Published: over 10 years ago

10.1038/srep18357

Subsite-specific contributions of different aromatic residues in the active site architecture of glycoside hydrolase family 12
Cited by: 23
Author(s): Xiaomei Zhang, Shuai Wang, Xiuyun Wu, Shijia Liu, Dandan Li, Hao Xu, Pin Gao, Guanjun Chen, Lushan Wang
Software Mentions: 1
Published: over 10 years ago

10.1038/srep18397

An engineered scorpion toxin analogue with improved Kv1.3 selectivity displays reduced conformational flexibility
Cited by: 21
Author(s): Ádám Bartók, Krisztina Fehér, Andrea Bodor, Kinga Rákosi, Gábor Tóth, Katalin E. Kövér, György Panyi, Zoltán Varga
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-017-10337-7

Studies on the regulatory mechanism of isocitrate dehydrogenase 2 using acetylation mimics
Cited by: 24
Author(s): Yuqun Xu, Lingwen Liu, Akira Nakamura, Shinichi Someya, Takuya Miyakawa, Masaru Tanokura
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-10246-9

Elucidation of potential sites for antibody engineering by fluctuation editing
Cited by: 15
Author(s): Saeko Yanaka, Yoshitaka Moriwaki, Kouhei Tsumoto, Kenji Sugase
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-10265-6

TCR–like antibodies mediate complement and antibody-dependent cellular cytotoxicity against Epstein-Barr virus–transformed B lymphoblastoid cells expressing different HLA-A*02 microvariants
Cited by: 11
Author(s): Junyun Lai, Joanna Ai Ling Choo, Wei Jian Tan, Chien Tei Too, Min Zin Oo, Manuel Adrian Suter, Fatima Mustafa, Nalini Srinivasan, Conrad En Zuo Chan, Andrew Lim, Youjia Zhong, Soh Ha Chan, Brendon J. Hanson, Nicholas R. J. Gascoigne, Paul A. MacAry
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-10917-7

1α,20S-Dihydroxyvitamin D3 Interacts with Vitamin D Receptor: Crystal Structure and Route of Chemical Synthesis
Cited by: 21
Author(s): Zongtao Lin, Hao Chen, Anna Y. Belorusova, John C. Bollinger, Edith K.Y. Tang, Zorica Janjetovic, Tae Kang Kim, Zhongzhi Wu, Duane D. Miller, Andrzej Slominski, Arnold E. Postlethwaite, Robert C. Tuckey, Natacha Rochel, Wei Li
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-10737-9

De novo design of antibody complementarity determining regions binding a FLAG tetra-peptide
Cited by: 25
Author(s): Kevin C. Entzminger, Ji Young Hyun, Robert J. Pantazes, Athéna C. Patterson-Orazem, Ahlam Qerqez, Zach Frye, Randall A. Hughes, Andrew D. Ellington, Raquel L. Lieberman, Costas D. Maranas, Jennifer A. Maynard
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-10906-w

Effect of amino acid mutations on the conformational dynamics of amyloidogenic immunoglobulin light-chains: A combined NMR and in silico study
Cited by: 4
Author(s): Sujoy Mukherjee, Simon P. Pondaven, Kieran Hand, Jillian Madine, Christopher P. Jaroniec
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-10741-z

Disease mutations reveal residues critical to the interaction of P4-ATPases with lipid substrates
Cited by: 20
Author(s): Rasmus Hvidbjerg Gantzel, Louise S. Mogensen, Stine A. Mikkelsen, Bente Vilsen, Robert S. Molday, Anna L. Vestergaard, Jens Peter Andersen
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-10932-8

Halotolerant aminopeptidase M29 from Mesorhizobium SEMIA 3007 with biotechnological potential and its impact on biofilm synthesis
Cited by: 6
Author(s): Elwi Guillermo Machado Sierra, Mariana Rangel Pereira, Thaís Carvalho Maester, Elisângela Soares Gomes-Pepe, E.R. Mendoza, Eliana Gertrudes de Macedo Lemos
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-11219-8

Structural basis for functional selectivity and ligand recognition revealed by crystal structures of human secreted phospholipase A2 group IIE
Cited by: 14
Author(s): Shulin Hou, Tingting Xu, Jinxin Xu, Linbing Qu, Yong Xu, Ling Chen, Jinsong Liu
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-11472-x

Rigidly connected multispecific artificial binders with adjustable geometries
Cited by: 26
Author(s): Yufan Wu, A. Batyuk, Annemarie Honegger, Fabian Brandl, Peer R. E. Mittl, Andreas Plückthun
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-11018-1

Synergy of two low-affinity NLSs determines the high avidity of influenza A virus nucleoprotein NP for human importin α isoforms
Cited by: 18
Author(s): Wei Wu, Rajeshwer S. Sankhala, Tyler J. Florio, Lixin Zhou, Nhan L. T. Nguyen, Ravi K. Lokareddy, Gino Cingolani, Nelly Panté
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-11736-6

Structural insights into the Middle East respiratory syndrome coronavirus 4a protein and its dsRNA binding mechanism
Cited by: 20
Author(s): Maria Batool, Masaud Shah, Mahesh Chandra Patra, Dhanusha Yesudhas, Sangdun Choi
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-12090-3

Rethinking the Origin of Primates by Reconstructing Their Diel Activity Patterns Using Genetics and Morphology
Cited by: 17
Author(s): Yeming Wu, Haifeng Wang, Haitao Wang, Elizabeth A. Hadly
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-11952-0

Phosphorylation of Suppressor of Hairless impedes its DNA-binding activity
Cited by: 11
Author(s): Anja C. Nagel, Jasmin S. Auer, Adriana Schulz, Jens Pfannstiel, Zhenyu Yuan, Courtney Collins, Rhett A. Kovall, Anette Preiss
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-12174-0

Enabling stop codon read-through translation in bacteria as a probe for amyloid aggregation
Cited by: 5
Author(s): Laura Molina García, Rafael Giraldo
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-10583-9

A Dual-Specific Targeting Approach Based on the Simultaneous Recognition of Duplex and Quadruplex Motifs
Cited by: 29
Author(s): Thi Quynh Ngoc Nguyen, Kah Wai Lim, Anh Tuân Phan
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-11416-5

Very-Low-Density Lipoprotein of Metabolic Syndrome Modulates Gap Junctions and Slows Cardiac Conduction
Cited by: 18
Author(s): Hsiang‐Chun Lee, Chih-Chieh Chen, Wei–Chung Tsai, Hsiang‐Ju Lin, Yi-Lin Shiao, Sheng‐Hsiung Sheu, Bin‐Nan Wu, Chu‐Huang Chen, Wen‐Ter Lai
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-10839-4

Antibacterial and immunomodulatory activities of insect defensins-DLP2 and DLP4 against multidrug-resistant Staphylococcus aureus
Cited by: 59
Author(s): Zhanzhan Li, Ruoyu Mao, Da Teng, Ya Hao, Huixian Chen, Xiumin Wang, Xiao Wang, Na Yang, Jianhua Wang
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-12283-w

Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT
Cited by: 35
Author(s): Tadashi Satoh, Chihong Song, Tong Zhu, T. Toshimori, Kazuyoshi Murata, Yuzo Hayashi, Hironari Kamikubo, Takayuki Uchihashi, Koichi Kato
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-12999-9

Autosomal dominant transmission of complicated hereditary spastic paraplegia due to a dominant negative mutation of KIF1A, SPG30 gene
Cited by: 36
Author(s): Chong Kun Cheon, Sohee Lim, Yoo-Mi Kim, Doyoun Kim, Na-Yoon Lee, Tae-Myung Yoon, Nam-Soon Kim, Eunjoon Kim, Jae-Ran Lee
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-13155-z

Activation-Induced Conformational Changes of Dopamine D3 Receptor Promote the Formation of the Internal Water Channel
Cited by: 8
Author(s): Wei-Hsiang Weng, Ya-Tzu Li, Hao-Jen Hsu
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-13371-7

Plasma-Generated OH Radical Production for Analyzing Three-Dimensional Structure in Protein Therapeutics
Cited by: 32
Author(s): Benjamin B. Minkoff, Joshua M. Blatz, Faraz A. Choudhury, D. M. Benjamin, J. L. Shohet, Michael R. Sussman
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-12530-0

Crystal structure of the flexible tandem repeat domain of bacterial cellulose synthesis subunit C
Cited by: 26
Author(s): Shingo Nojima, Atsushi Fujishima, Koji Kato, Kayoko Ohuchi, Nobutaka Shimizu, Kazuya Yonezawa, Kenji Tajima, Min Yao
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-13427-8

Characterization of Fluorescein Arsenical Hairpin (FlAsH) as a Probe for Single-Molecule Fluorescence Spectroscopy
Cited by: 12
Author(s): Dennis D. Fernandes, Jasbir Bamrah, Senthilkumar Kailasam, Gregory-Neal W. Gomes, Yuchong Li, Hans-Joachim Wieden, Claudiu C. Gradinaru
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-13135-3

Molecular Mechanisms of the Binding and Specificity of Streptococcus Pneumoniae Sortase C Enzymes for Pilin Subunits
Cited by: 7
Author(s): Emmanuel B. Naziga, Jeff Wereszczynski
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-13709-1

Interfering with the high-affinity interaction between wheat amylase trypsin inhibitor CM3 and toll-like receptor 4: in silico and biosensor-based studies
Cited by: 32
Author(s): Massimiliano Cuccioloni, Matteo Mozzicafreddo, Laura Bonfili, Valentina Cecarini, Mara Giangrossi, Maurizio Falconi, Shin-Ichiroh Saitoh, Anna Maria Eleuteri, Mauro Angeletti
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-13557-z

Structural analysis of PIM1 kinase complexes with ATP-competitive inhibitors
Cited by: 18
Author(s): Jozefina Bogusz, Karol Źrubek, Krzysztof P. Rembacz, P. Grudnik, Przemysław Golik, Małgorzata Romanowska, Benedykt Władyka, Grzegorz Dubin
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-13750-0

Expression and function of Abcg4 in the mouse blood-brain barrier: role in restricting the brain entry of amyloid-β peptide
Cited by: 29
Author(s): Agnès Dodacki, Matthew D. Wortman, Bruno Saubaméa, Stéphanie Chasseigneaux, Sophie Nicolic, Nathalie Prince, Murielle Lochus, Anne-Laure Raveu, Xavier Declèves, Jean‐Michel Scherrmann, Shailendra B. Patel, Fanchon Bourasset
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-14011-w

Substrate recognition by two different P450s: Evidence for conserved roles in a common fold
Cited by: 10
Author(s): Drew Tietz, Allison M. Colthart, Susan Sondej Pochapsky, Thomas C. Pochapsky
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-13845-8

Conformational effects of N-glycan core fucosylation of immunoglobulin G Fc region on its interaction with Fcγ receptor IIIa
Cited by: 54
Author(s): Yoshitake Sakae, Tadashi Satoh, Hirokazu Yagi, Saeko Yanaka, Takumi Yamaguchi, Yuya Isoda, Shigeru Iida, Yuko Okamoto, Koichi Kato
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-14731-z

Combined x-ray crystallography and computational modeling approach to investigate the Hsp90 C-terminal peptide binding to FKBP51
Cited by: 26
Author(s): Rajnish Kumar, M. Moche, Bengt Winblad, Pavel F. Pavlov
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-14112-6

Nanobodies effectively modulate the enzymatic activity of CD38 and allow specific imaging of CD38+ tumors in mouse models in vivo
Cited by: 53
Author(s): William Fumey, Julia Koenigsdorf, Valentin Kunick, Stephan Menzel, Kerstin Schütze, Mandy Unger, Levin Schriewer, Friedrich Haag, Gerhard Adam, Anna Oberle, Mascha Binder, Ralf Fliegert, Andreas H. Guse, Yong Zhao, Hon Cheung Lee, Fabio Malavasi, Fernando A. Goldbaum, Rob van Hegelsom, Catelijne Stortelers, Peter Bannas, Friedrich Koch-Nolte
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-15341-5

Substrate Specificity and Allosteric Regulation of a d-Lactate Dehydrogenase from a Unicellular Cyanobacterium are Altered by an Amino Acid Substitution
Cited by: 15
Author(s): Shoki Ito, Masahiro Takeya, Takashi Osanai
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-15774-y

Structural Basis for DNA Recognition of a Single-stranded DNA-binding Protein from Enterobacter Phage Enc34
Cited by: 12
Author(s): Elina Cernooka, J. Rumnieks, Kaspars Tārs, Andris Kazāks
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-15614-z

PLA2-like proteins myotoxic mechanism: a dynamic model description
Cited by: 30
Author(s): Rafael J. Borges, Ney Lemke, Marcos R.M. Fontes
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-15733-7

Inhibition activity of a traditional Chinese herbal formula Huang-Lian-Jie-Du-Tang and its major components found in its plasma profile on neuraminidase-1
Cited by: 22
Author(s): Xuelin Zhou, Haotian Li, Zhilong Shi, Sijia Gao, Shizhang Wei, Kun Li, Jiabo Wang, Jianyu Li, Ruilin Wang, Ming Gong, Zhao Yan, Xiaohe Xiao
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-15837-0

Structure of FlgK reveals the divergence of the bacterial Hook-Filament Junction of Campylobacter
Cited by: 9
Author(s): Paula V. Bulieris, Nausad H. Shaikh, Peter L. Freddolino, Fadel A. Samatey
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-16203-w

Influences of lone-pair electrons on directionality of hydrogen bonds formed by hydrophilic amino acid side chains in molecular dynamics simulation
Cited by: 17
Author(s): Tomotaka Oroguchi, Masayoshi Nakasako
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-16123-9

Intrinsic short-tailed azole resistance in mucormycetes is due to an evolutionary conserved aminoacid substitution of the lanosterol 14α-demethylase
Cited by: 53
Author(s): Rita Caramalho, Joel D. A. Tyndall, Brian C. Monk, Thomas Larentis, Cornelia Lass‐Flörl, Michaela Lackner
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-16413-2

Structural basis of cholesterol binding by a novel clade of dendritic cell modulators from ticks
Cited by: 10
Author(s): Pietro Roversi, Steven Johnson, Stephen G. Preston, Miles A. Nunn, Guido C. Paesen, Jonathan M. Austyn, Patricia A. Nuttall, Susan M. Lea
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-16388-0

Second messenger analogues highlight unexpected substrate sensitivity of CD38: total synthesis of the hybrid “L-cyclic inosine 5′-diphosphate ribose”
Cited by: 4
Author(s): Joanna M. Watt, Richard Graeff, Mark Thomas, Barry V. L. Potter
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-16029-6

Identification of the Binding Sites on Rab5 and p110beta Phosphatidylinositol 3-kinase
Cited by: 5
Author(s): Dielle E. Whitecross, Deborah H. Anderson
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-15711-z

Design and applications of a clamp for Green Fluorescent Protein with picomolar affinity
Cited by: 45
Author(s): Simon Hansen, Jakob C. Stüber, Patrick Erñst, Alexander W. Koch, Daniel Bojar, A. Batyuk, Andreas Plückthun
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-15997-z

Features of reactive cysteines discovered through computation: from kinase inhibition to enrichment around protein degrons
Cited by: 19
Author(s): Nicholas Fowler, Christopher F. Blanford, Sam P. de Visser, Jim Warwicker
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-16953-7

Concurrent structural and biophysical traits link with immunoglobulin light chains amyloid propensity
Cited by: 47
Author(s): Luca Oberti, Paola Rognoni, Alberto Barbiroli, Francesca Lavatelli, Rosaria Russo, Martina Maritan, Giovanni Palladini, Martino Bolognesi, Giampaolo Merlini, Stéfano Ricagno
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-16841-0

Rational engineering of a native hyperthermostable lactonase into a broad spectrum phosphotriesterase
Cited by: 36
Author(s): Pauline Jacquet, Julien Hiblot, David Daudé, Céline Bergonzi, Guillaume Gotthard, Nicholas Armstrong, Éric Chabrière, Mikael Elias
Software Mentions: 1
Published: over 8 years ago

Projects: pypi: PyMOL

Science Score: 90/100

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Papers Mentioning PyMOL 8,266