10.3390/toxins13080508

Evaluation of Anti-PT Antibody Response after Pertussis Vaccination and Infection: The Importance of Both Quantity and Quality
Cited by: 8
Author(s): Alex‐Mikael Barkoff, Aapo Knuutila, Jussi Mertsola, Qiushui He
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.tibs.2008.07.006

The CCN family of proteins: structure–function relationships
Cited by: 358
Author(s): Kenneth P. Holbourn, K. Ravi Acharya, Bernard Perbal
Software Mentions: 1
Published: almost 18 years ago

10.1016/j.tim.2016.07.001

Driving Apart and Segregating Genomes in Archaea
Cited by: 25
Author(s): Daniela Barillà
Software Mentions: 1
Published: over 9 years ago

10.1186/s40794-021-00147-1

Immunoinformatics approach for multi-epitope vaccine design against structural proteins and ORF1a polyprotein of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2)
Cited by: 14
Author(s): Khalid Mohamed Adam
Software Mentions: 1
Published: about 5 years ago

10.3390/tropicalmed3020063

Outer Membrane Protein A Conservation among Orientia tsutsugamushi Isolates Suggests Its Potential as a Protective Antigen and Diagnostic Target
Cited by: 5
Author(s): Sean M. Evans, Haley E. Adcox, Lauren VieBrock, Ryan S. Green, Alison Luce-Fedrow, Suschsmita Chattopadhyay, Ju Jiang, Richard T. Marconi, Daniel Paris, Allen L. Richards, Jason A. Carlyon
Software Mentions: 1
Published: about 8 years ago

10.3390/tropicalmed5040179

In Silico Structural and Functional Characterization of HtrA Proteins of Leptospira spp.: Possible Implications in Pathogenesis
Cited by: 2
Author(s): Brenda B. Daroz, Luis G. V. Fernandes, Aline F. Teixeira, Ana L. T. O. Nascimento
Software Mentions: 1
Published: over 5 years ago

10.3906/biy-2002-20

Model prediction of a Kunitz-type trypsin inhibitor protein from seeds of Acacianilotica L. with strong antimicrobial and insecticidal activity
Cited by: 8
Author(s): Sohaib Mehmood, Muhammad Imran, Asghar Ali, Aisha Munawar, Binish Khaliq, Farzeen Anwar, Qamar Saeed, Friedrich Buck, Saber M. Hussain, Ahsan Saeed, Muhammad Ashraf, Ahmed Akrem
Software Mentions: 1
Published: almost 6 years ago

10.3906/kim-2101-25

Novel Mannich bases with strong carbonic anhydrases and acetylcholinesterase inhibition effects: 3-(aminomethyl)-6-{3-[4-(trifluoromethyl)phenyl]acryloyl}-2(3H)- benzoxazolones
Cited by: 13
Author(s): Sinan Bilginer, Barış Anıl, Mehmet Koca, Yeliz Demir, İlhami Gülçın
Software Mentions: 1
Published: about 5 years ago

10.1101/2020.03.15.992883

A Cryptic Site of Vulnerability on the Receptor Binding Domain of the SARS-CoV-2 Spike Glycoprotein
Cited by: 28
Author(s): Michael Joyce, Rajeshwer S. Sankhala, Wei‐Hung Chen, Misook Choe, Hongjun Bai, Agnes Hajduczki, Lianying Yan, Spencer L Sterling, Caroline E. Peterson, Ethan C Green, Catherine Arnott Smith, Natalia de Val, Mihret F. Amare, Paul T. Scott, E. Laing, Christopher C. Broder, Morgane Rolland, Nelson L. Michael, Kayvon Modjarrad
Software Mentions: 1
Published: over 6 years ago

10.1101/2020.06.17.156554

Cryo-EM structure of the SARS-CoV-2 3a ion channel in lipid nanodiscs
Cited by: 65
Author(s): David Kern, Ben Sorum, Sonali Mali, Christopher Hoel, Savitha Sridharan, Jonathan Remis, Daniel B. Toso, Abhay Kotecha, Diana M. Bautista, Stephen G. Brohawn
Software Mentions: 1
Published: about 6 years ago

10.1101/2020.08.11.244863

Cryo-EM Structures of the SARS-CoV-2 Endoribonuclease Nsp15
Cited by: 5
Author(s): Monica C. Pillon, Meredith N. Frazier, Lucas Dillard, Jason Williams, Seda Kocaman, Lalith Perera, Jacob Gordon, Mack Sobhany, Allen Hsu, Venkata P. Dandey, Mario J. Borgnia, Robin E. Stanley
Software Mentions: 1
Published: almost 6 years ago

10.1101/2020.08.14.251496

Rational Design of SARS-CoV-2 Spike Glycoproteins To Increase Immunogenicity By T Cell Epitope Engineering
Cited by: 2
Author(s): Edison Ong, Xiaoqiang Huang, Robin Pearce, Yang Zhang, Yongqun He
Software Mentions: 1
Published: almost 6 years ago

10.1101/2021.03.15.435551

Discovery of SARS-CoV-2 papain-like protease inhibitors through a combination of high-throughput screening and FlipGFP-based reporter assay
Cited by: 1
Author(s): Zhouhui Xia, M. Sacco, Chunlong Ma, Julia Alma Townsend, Naoya Kitamura, Yanmei Hu, Mandy Ba, Tommy Szeto, Xiujun Zhang, Xiangzhi Meng, Fu‐Shun Zhang, Yan Xiang, Michael T. Marty, Yu Chen, Jun Wang
Software Mentions: 1
Published: over 5 years ago

10.1101/2021.04.09.439169

Regulation of the Dimerization and Activity of SARS-CoV-2 Main Protease through Reversible Glutathionylation of Cysteine 300
Cited by: 0
Author(s): David A. Davis, Haydar Bulut, Prabha Shrestha, Amulya Yaparla, Hannah K. Jaeger, Shin-ichiro Hattori, Paul T. Wingfield, Hiroaki Mitsuya, Robert Yarchoan
Software Mentions: 1
Published: over 5 years ago

10.1101/2021.05.09.443331

SARS-CoV-2 ferritin nanoparticle vaccines elicit broad SARS coronavirus immunogenicity
Cited by: 12
Author(s): Michael Joyce, Wei‐Hung Chen, Rajeshwer S. Sankhala, Agnes Hajduczki, Paul Thomas, Misook Choe, William C. Chang, Caroline E. Peterson, Elizabeth Martinez, Elaine Morrison, Catherine Arnott Smith, Aslaa Ahmed, Lindsay Wieczorek, Alexander R.A. Anderson, Rita E. Chen, James Brett Case, Yifan Li, Therese Oertel, Lorean Rosado, Akshaya Ganesh, Connor Whalen, Joshua M. Carmen, Letzibeth Mendez-Rivera, Christopher P. Karch, Neelakshi Gohain, Zuzana Villar, David W. McCurdy, Zoltán Beck, Jiae Kim, Shikha Shrivastava, Ousman Jobe, Vincent Dussupt, Sebastian Molnar, Ursula Tran, Chandrika B. Kannadka, Michelle Zemil, Htet Khanh, Weimin Wu, Matthew A. Cole, Debra K. Duso, Larry W. Kummer, Tricia J. Lang, Shania E. Muncil, Jeffrey R. Currier, Shelly J. Krebs, Victoria R. Polonis, Saravanan Rajan, Patrick M. McTamney, Mark T. Esser, William W. Reiley, Morgane Rolland, Natalia de Val, Michael S. Diamond, Gregory D. Gromowski, Gary R. Matyas, Mangala Rao, Nelson L. Michael, Kayvon Modjarrad
Software Mentions: 1
Published: about 5 years ago

10.1101/2021.08.02.454546

Structural Basis and Mode of Action for Two Broadly Neutralizing Antibodies Against SARS-CoV-2 Emerging Variants of Concern
Cited by: 10
Author(s): Walther Mothes, Wen-Wei Li, Yaozong Chen, Jérémie Prévost, Irfan Ullah, Maolin Lu, Shang Yu Gong, Alexandra Tauzin, Romain Gasser, Dani Vézina, Sai Priya Anand, Guillaume Goyette, Debashree Chaterjee, Shilei Ding, W.D. Tolbert, Michael W Grunst, Yuxia Bo, Shijian Zhang, Jonathan Richard, Fei Zhou, Rick Huang, Lothar Esser, Allison Zeher, Marceline Côté, Priti Kumar, Joseph Sodroski, Di Xia, Pradeep D. Uchil, M. Pazgier, Andrés Finzi
Software Mentions: 1
Published: almost 5 years ago

10.1101/2021.08.25.457692

The Lambda variant of SARS-CoV-2 has a better chance than the Delta variant to escape vaccines
Cited by: 23
Author(s): Haolin Liu, Pengcheng Wei, Qianqian Zhang, Katja Aviszus, Jared Linderberger, John Yang, Junfeng Liu, Zhongzhou Chen, Hassan Waheed, Lyndon Reynoso, Gregory P. Downey, Stephen K. Frankel, John W. Kappler, Philippa Marrack, Gongyi Zhang
Software Mentions: 1
Published: almost 5 years ago

10.1101/2021.08.25.457627

Effects of Spike Mutations in SARS-CoV-2 Variants of Concern on Human or Animal ACE2-Mediated Virus Entry and Neutralization
Cited by: 6
Author(s): Yun-Jeong Kim, Natasha N. Gaudreault, David A. Meekins, Krishani Dinali Perera, Dashzeveg Bold, Jessie D. Trujillo, Igor Morozov, Chester McDowell, Kyeong‐Ok Chang, Jüergen A. Richt
Software Mentions: 1
Published: almost 5 years ago

10.1128/mBio.01123-16

Dengue Virus Envelope Dimer Epitope Monoclonal Antibodies Isolated from Dengue Patients Are Protective against Zika Virus
Cited by: 196
Author(s): Jesica Swanstrom, Jessica A. Plante, Kenneth S. Plante, Ellen Young, Eileen McGowan, Emily N. Gallichotte, Douglas G. Widman, Mark T. Heise, A. M. de Silva, Ralph S. Baric
Software Mentions: 1
Published: almost 10 years ago

10.1128/mBio.00240-16

SpoVG Is a Conserved RNA-Binding Protein That Regulates Listeria monocytogenes Lysozyme Resistance, Virulence, and Swarming Motility
Cited by: 34
Author(s): Thomas Burke, Daniel A. Portnoy
Software Mentions: 1
Published: about 10 years ago

10.1128/mBio.01537-16

Mycobacteriophages as Incubators for Intein Dissemination and Evolution
Cited by: 22
Author(s): Danielle S. Kelley, Christopher Lennon, Sea-Phages, Marlene Belfort, О. С. Новикова
Software Mentions: 1
Published: over 9 years ago

10.1128/mBio.01785-16

Identification of YbeY-Protein Interactions Involved in 16S rRNA Maturation and Stress Regulation in Escherichia coli
Cited by: 48
Author(s): Maarten Vercruysse, Caroline Köhrer, Yang Shen, Sandra Proulx, Anubrata Ghosal, Bryan William Davies, Uttam L. RajBhandary, Graham C. Walker
Software Mentions: 1
Published: over 9 years ago

10.1128/mBio.02189-16

Toxoplasma DJ-1 Regulates Organelle Secretion by a Direct Interaction with Calcium-Dependent Protein Kinase 1
Cited by: 14
Author(s): Matthew A. Child, Megan Garland, Ian T. Foe, Peter Madzelan, Moritz Treeck, Wouter A. van der Linden, Kristina Oresic Bender, Eranthie Weerapana, Mark A. Wilson, John C. Boothroyd, Michael L. Reese, Matthew Bogyo
Software Mentions: 1
Published: over 9 years ago

10.1128/mBio.00078-17

Antibody against Microbial Neuraminidases Recognizes Human Sialidase 3 (NEU3): the Neuraminidase/Sialidase Superfamily Revisited
Cited by: 8
Author(s): Chiguang Feng, Jihong Li, Greg Snyder, Wei Huang, Simeon E. Goldblum, Wilbur H. Chen, Lai-Xi Wang, Bruce A. McClane, Alan S. Cross
Software Mentions: 1
Published: about 9 years ago

10.1128/mBio.00570-17

Functional Role of Lanthanides in Enzymatic Activity and Transcriptional Regulation of Pyrroloquinoline Quinone-Dependent Alcohol Dehydrogenases in <i>Pseudomonas putida</i> KT2440
Cited by: 112
Author(s): Matthias Wehrmann, Patrick Billard, Audrey Martin-Mériadec, Asfaw Zegeye, Janosch Klebensberger
Software Mentions: 1
Published: about 9 years ago

10.1128/mBio.01344-17

Structural Basis of Type 2 Secretion System Engagement between the Inner and Outer Bacterial Membranes
Cited by: 45
Author(s): Iain D. Hay, Matthew J. Belousoff, Trevor Lithgow
Software Mentions: 1
Published: over 8 years ago

10.1128/mBio.02158-17

Molecular Insights into Function and Competitive Inhibition of <i>Pseudomonas aeruginosa</i> Multiple Virulence Factor Regulator
Cited by: 46
Author(s): Tomoe Kitao, François Lépine, Seda Babloudi, F. Walte, Stefan Steinbacher, K. Maskos, M. Blaesse, Michele Negri, Michael J. Pucci, Bob Zahler, Antonio Felici, Laurence G. Rahme
Software Mentions: 1
Published: over 8 years ago

10.1128/mBio.01663-17

<i>Mycoplasma pneumoniae</i> Community-Acquired Respiratory Distress Syndrome Toxin Uses a Novel KELED Sequence for Retrograde Transport and Subsequent Cytotoxicity
Cited by: 13
Author(s): Kumaraguruparan Ramasamy, Sowmya Balasubramanian, Manickam Krishnan, Lavanya Pandranki, Alexander B. Taylor, P. John Hart, Joel B. Baseman, Thirumalai R Kannan
Software Mentions: 1
Published: over 8 years ago

10.1128/mBio.02332-17

NAction! How Can Neuraminidase-Based Immunity Contribute to Better Influenza Virus Vaccines?
Cited by: 173
Author(s): Florian Krammer, Ron A. M. Fouchier, Maryna C. Eichelberger, Richard J. Webby, Kathryn Shaw-Saliba, Hongquan Wan, Patrick C. Wilson, Richard W. Compans, Ioanna Skountzou, Arnold S. Monto
Software Mentions: 1
Published: about 8 years ago

10.1128/mBio.01422-18

Reverse Genetics for Type I Feline Coronavirus Field Isolate To Study the Molecular Pathogenesis of Feline Infectious Peritonitis
Cited by: 12
Author(s): Rosina Ehmann, Claudia Kristen-Burmann, Barbara Bank-Wolf, Matthias König, Christiane Herden, Torsten Hain, Heinz-Jürgen Thiel, John Ziebuhr, Gergely Tekes
Software Mentions: 1
Published: almost 8 years ago

10.1128/mBio.01905-18

Identification of Novel Protein Lysine Acetyltransferases in Escherichia coli
Cited by: 70
Author(s): David G. Christensen, Jesse G. Meyer, Jackson Baumgartner, Alexandria K. D’Souza, Karen E. Nelson, Samuel H. Payne, Misty L. Kuhn, Birgit Schilling, Alan J. Wolfe
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.01193-18

Suppression of Drug Resistance Reveals a Genetic Mechanism of Metabolic Plasticity in Malaria Parasites
Cited by: 15
Author(s): Ann M. Guggisberg, Philip Frasse, Andrew J. Jezewski, Natasha M. Kafai, Aakash Y. Gandhi, Samuel J. Erlinger, Audrey Odom John
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.02101-17

Synergistic Lethality of a Binary Inhibitor of Mycobacterium tuberculosis KasA
Cited by: 35
Author(s): Pradeep Kumar, Glenn C. Capodagli, Divya Awasthi, Riju Shrestha, Karishma Maharaja, Paridhi Sukheja, Shao Gang Li, Daigo Inoyama, Matthew Zimmerman, Hsin Pin Ho Liang, Jansy Sarathy, Marizel Mina, George Rasic, Riccardo Russo, Alexander L. Perryman, Todd Richmann, Aditi Gupta, Eric Singleton, Sheetal Verma, Shahid Husain, Patricia Soteropoulos, Zhe Wang, Roxanne Morris, Gene Porter, Gautam Agnihotri, Padmini Salgame, Sean Ekins, Kyu Y. Rhee, Nancy Connell, Véronique Dartois, Matthew B. Neiditch, Joel S. Freundlich, David Alland
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.00214-19

Staphylococcal Superantigens Stimulate Epithelial Cells through CD40 To Produce Chemokines
Cited by: 25
Author(s): Patrick M. Schlievert, Michael P. Cahill, Bruce S. Hostager, Amanda J. Brosnahan, Aloysius J. Klingelhutz, Françoise A. Gourronc, Gail A. Bishop, Donald Y.M. Leung
Software Mentions: 1
Published: about 7 years ago

10.1128/mBio.00385-19

Genetic Screen in Chlamydia muridarum Reveals Role for an Interferon-Induced Host Cell Death Program in Antimicrobial Inclusion Rupture
Cited by: 19
Author(s): Amanda M. Giebel, Hu Shuai, Krithika Rajaram, Ryan Finethy, Evelyn Toh, Julie A. Brothwell, Sandra G. Morrison, Robert J. Suchland, Barry D. Stein, Jörn Coers, Richard P. Morrison, David E. Nelson
Software Mentions: 1
Published: about 7 years ago

10.1128/mBio.01334-19

Antifungal Activity of the Enterococcus faecalis Peptide EntV Requires Protease Cleavage and Disulfide Bond Formation
Cited by: 27
Author(s): Armand O. Brown, Carrie E. Graham, Melissa R. Cruz, Kavindra V. Singh, Barbara E. Murray, Michael Lorenz, Danielle A. Garsin
Software Mentions: 1
Published: almost 7 years ago

10.1128/mBio.00734-19

Sudan Ebolavirus VP35-NP Crystal Structure Reveals a Potential Target for Pan-Filovirus Treatment
Cited by: 8
Author(s): Sara Landeras-Bueno, Shun-ichiro Oda, Michael Norris, Zhe Salie, Javier Guenaga, Richard T. Wyatt, Erica Ollmann Saphire
Software Mentions: 1
Published: almost 7 years ago

10.1128/mBio.01537-19

Selection of Cyanobacterial ( <i>Synechococcus</i> sp. Strain PCC 6301) RubisCO Variants with Improved Functional Properties That Confer Enhanced CO ₂ -Dependent Growth of Rhodobacter capsulatus, a Photosynthetic Bacterium
Cited by: 21
Author(s): Sriram Satagopan, Katherine A. Huening, F. Robert Tabita
Software Mentions: 1
Published: almost 7 years ago

10.1128/mBio.00790-19

A Vibrio cholerae BolA-Like Protein Is Required for Proper Cell Shape and Cell Envelope Integrity
Cited by: 24
Author(s): Aurore Fleurie, Abdelrahim Zoued, Laura Álvarez, Kelly M. Hines, Felipe Cava, Libin Xu, Brigid M. Davis, Matthew K. Waldor
Software Mentions: 1
Published: almost 7 years ago

10.1128/mBio.01794-19

Influenza Virus Polymerase Mutation Stabilizes a Foreign Gene Inserted into the Virus Genome by Enhancing the Transcription/Replication Efficiency of the Modified Segment
Cited by: 5
Author(s): Yuri Furusawa, S. Yamada, Tiago José da Silva Lopes, Jayeeta Dutta, Zenab Khan, Divya Kriti, Harm van Bakel, Yoshihiro Kawaoka
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.02343-19

Antibodies to Cryptic Epitopes in Distant Homologues Underpin a Mechanism of Heterologous Immunity between<i>Plasmodium vivax</i>PvDBP and<i>Plasmodium falciparum</i>VAR2CSA
Cited by: 18
Author(s): Catherine J. Mitran, Angie Mena, Sédami Gnidehou, Shanna L. Banman, Eliana Arango, Bárbara A. S. Lima, Hazel Lugo, Aravindhan Ganesan, Ali Salanti, Anthony K. Mbonye, Francis B. Ntumngia, Khaled Barakat, John Adams, Flora Satiko Kano, Luzia H. Carvalho, Amanda Maestre, Michael F. Good, Stephanie K. Yanow
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.02822-19

A Conserved Regulatory Circuit Controls Large Adhesins in Vibrio cholerae
Cited by: 26
Author(s): Giordan Kitts, Krista M. Giglio, David Zamorano‐Sánchez, Jin Hwan Park, Loni Townsley, Richard B. Cooley, Benjamin R. Wucher, Karl E. Klose, Carey D. Nadell, Fitnat H. Yildiz, Holger Sondermann
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.02721-19

Bottom-Up Fabrication of Protein Nanowires via Controlled Self-Assembly of Recombinant <i>Geobacter</i> Pilins
Cited by: 16
Author(s): Krista Cosert, Angelines Castro-Forero, Rebecca J. Steidl, R. Mark Worden, Gemma Reguera
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.03203-19

Hijacking the Fusion Complex of Human Parainfluenza Virus as an Antiviral Strategy
Cited by: 15
Author(s): Tara C. Marcink, Elon Yariv, Ksenia Rybkina, Vicente Más, Francesca T. Bovier, Amédée des Georges, Alex Greninger, Christopher A. Alabi, Matteo Porotto, Nir Ben‐Tal, Anne Moscona
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.03230-19

Pyocin S5 Import into Pseudomonas aeruginosa Reveals a Generic Mode of Bacteriocin Transport
Cited by: 37
Author(s): Hannah Michaela Behrens, E.D. Lowe, Joseph Gault, Nicholas G. Housden, Renata Kaminska, Timm Weber, Catriona M A Thompson, Gaëtan L. A. Mislin, Isabelle J. Schalk, Daniel Walker, Carol V. Robinson, Colin Kleanthous
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.02749-19

Cryo-electron Microscopy Structure and Transport Mechanism of a Wall Teichoic Acid ABC Transporter
Cited by: 31
Author(s): Li Chen, Wentao Hou, Tao Fan, Banghui Liu, Ting Pan, Yuhui Li, Yong-Liang Jiang, Wen Wen, Zhipeng Chen, Linfeng Sun, Cong‐Zhao Zhou, Yuxing Chen
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.00603-20

Global Trends in Proteome Remodeling of the Outer Membrane Modulate Antimicrobial Permeability in Klebsiella pneumoniae
Cited by: 30
Author(s): Andrea Rocker, Jake A. Lacey, Matthew J. Belousoff, Jonathan J. Wilksch, Richard A. Strugnell, Mark R. Davies, Trevor Lithgow
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.00488-20

Structural Analysis of an <scp>l</scp> -Cysteine Desulfurase from an Ssp DNA Phosphorothioation System
Cited by: 8
Author(s): Liqiong Liu, Shu‐Heng Jiang, Xing Mai, Chao Chen, Chongde Lai, Na Li, Guangfeng Liu, Dan Wu, Haiyan Gao, Hong Luan, Pan Tan, Shi Chen, Zixin Deng, Geng Wu, Lianrong Wang
Software Mentions: 1
Published: about 6 years ago

10.1016/j.jmb.2009.12.047

The Indispensable N-Terminal Half of eIF3j/HCR1 Cooperates with its Structurally Conserved Binding Partner eIF3b/PRT1-RRM and with eIF1A in Stringent AUG Selection
Cited by: 76
Author(s): Latifa ElAntak, Susan Wagner, Anna Herrmannová, Martina Karásková, Edit Rutkai, Peter J. Lukavsky, Leoš Shivaya Valášek
Software Mentions: 1
Published: over 16 years ago

10.1016/j.jmb.2010.06.025

Structure and Reactivity of Bacillus subtilis MenD Catalyzing the First Committed Step in Menaquinone Biosynthesis
Cited by: 33
Author(s): Alice Dawson, Minjiao Chen, Paul K. Fyfe, Zhihong Guo, William N. Hunter
Software Mentions: 1
Published: almost 16 years ago

10.1016/j.jmb.2009.09.006

RelB and RelE of Escherichia coli Form a Tight Complex That Represses Transcription via the Ribbon–Helix–Helix Motif in RelB
Cited by: 107
Author(s): Martin Overgaard, Jonas Borch, Kenn Gerdes
Software Mentions: 1
Published: over 16 years ago

10.1016/j.jmb.2019.04.009

Can Predicted Protein 3D Structures Provide Reliable Insights into whether Missense Variants Are Disease Associated?
Cited by: 300
Author(s): Sirawit Ittisoponpisan, Suhail A. Islam, Tarun Khanna, Eman Alhuzimi, Alessia David, Michael J.E. Sternberg
Software Mentions: 1
Published: about 7 years ago

10.1016/j.jmb.2010.05.053

An Alternative Conformation of the T-Cell Receptor α Constant Region
Cited by: 14
Author(s): Gijs I van Boxel, S. Holmes, Lars Fugger, E Y Jones
Software Mentions: 1
Published: about 16 years ago

10.1016/j.jmb.2008.01.030

Structure of the Tandem Fibronectin Type 3 Domains of Neural Cell Adhesion Molecule
Cited by: 37
Author(s): Federico Carafoli, Jane L. Saffell, Erhard Hohenester
Software Mentions: 1
Published: over 18 years ago

10.1016/j.jmb.2015.03.010

The Pentameric Nucleoplasmin Fold Is Present in Drosophila FKBP39 and a Large Number of Chromatin-Related Proteins
Cited by: 29
Author(s): Christian Edlich‐Muth, Jean-Baptiste Artero, Philip Callow, Marcin R. Przewloka, Aleksandra A. Watson, Wei Zhang, David M. Glover, Janusz Dębski, Michał Dadlez, Adam Round, V. Trevor Forsyth, Ernest D. Laue
Software Mentions: 1
Published: about 11 years ago

10.1016/j.jmb.2011.01.034

The DNA-Binding Domain of Human PARP-1 Interacts with DNA Single-Strand Breaks as a Monomer through Its Second Zinc Finger
Cited by: 132
Author(s): Sebastian Eustermann, Hortense Videler, Ji‐Chun Yang, Paul T. Cole, Dominika T. Gruszka, Dmitry B. Veprintsev, David Neuhaus
Software Mentions: 1
Published: over 15 years ago

10.1016/j.jmb.2012.08.005

Structural Basis for ASPP2 Recognition by the Tumor Suppressor p73
Cited by: 20
Author(s): P. Canning, Frank von Delft, Alex N. Bullock
Software Mentions: 1
Published: over 13 years ago

10.1016/j.jmb.2010.07.007

Allosteric Remodelling of the Histone H3 Binding Pocket in the Pygo2 PHD Finger Triggered by Its Binding to the B9L/BCL9 Co-Factor
Cited by: 40
Author(s): Teresa L. Miller, Trevor J. Rutherford, Christopher M. Johnson, Marc Fiedler, Mariann Bienz
Software Mentions: 1
Published: almost 16 years ago

10.1016/j.jmb.2009.09.061

The Structure of the N-Terminus of Kindlin-1: A Domain Important for αIIbβ3 Integrin Activation
Cited by: 82
Author(s): Benjamin T. Goult, Mohamed Bouaouina, David S. Harburger, Neil Bate, Bipin Patel, Nicholas J. Anthis, Iain D. Campbell, David A. Calderwood, Igor Barsukov, G. C. K. Roberts, David R. Critchley
Software Mentions: 1
Published: over 16 years ago

10.1016/j.jmb.2019.06.003

CHAP: A Versatile Tool for the Structural and Functional Annotation of Ion Channel Pores
Cited by: 90
Author(s): Gianni Klesse, Shanlin Rao, Mark S.P. Sansom, Stephen J. Tucker
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.jmb.2009.01.069

Crystallographic and Cellular Characterisation of Two Mechanisms Stabilising the Native Fold of α1-Antitrypsin: Implications for Disease and Drug Design
Cited by: 34
Author(s): Bibek Gooptu, Elena Miranda, Irene Nobeli, Meera Mallya, A. Purkiss, Sarah C. Leigh Brown, Charlotte Summers, Russell L. Phillips, David A. Lomas, Tracey E. Barrett
Software Mentions: 1
Published: over 17 years ago

10.1016/j.jmb.2015.03.021

Structure of a Single-Chain Fv Bound to the 17 N-Terminal Residues of Huntingtin Provides Insights into Pathogenic Amyloid Formation and Suppression
Cited by: 21
Author(s): Erwin De Genst, Dimitri Y. Chirgadze, Fabrice Klein, David Butler, Dijana Matak-Vinković, Yvon Trottier, James S. Huston, Anne Messer, Christopher M. Dobson
Software Mentions: 1
Published: about 11 years ago

10.1016/j.jmb.2008.03.077

Thioredoxin A Active-Site Mutants Form Mixed Disulfide Dimers That Resemble Enzyme–Substrate Reaction Intermediates
Cited by: 20
Author(s): Thijs R. H. M. Kouwen, Juni Andréll, Rianne Schrijver, Jean-Yves F. Dubois, M.J. Maher, So Iwata, E.P. Carpenter, Jan Maarten van Dijl
Software Mentions: 1
Published: about 18 years ago

10.1016/j.jmb.2014.11.009

Distinct Features of Cap Binding by eIF4E1b Proteins
Cited by: 21
Author(s): Dorota Kubacka, Ricardo Núñez Miguel, Nicola Minshall, Edward Darżynkiewicz, Nancy Standart, Joanna Zuberek
Software Mentions: 1
Published: over 11 years ago

10.1016/j.jmb.2010.01.074

Protein Folding Requires Crowd Control in a Simulated Cell
Cited by: 76
Author(s): Benjamin R. Jefferys, Lawrence A. Kelley, Michael J.E. Sternberg
Software Mentions: 1
Published: over 16 years ago

10.1016/j.jmb.2010.03.008

Structural and Functional Analysis of the Engineered Type I DNA Methyltransferase EcoR124INT
Cited by: 11
Author(s): James E. Taylor, Philip Callow, Anna Swiderska, Geoff Kneale
Software Mentions: 1
Published: about 16 years ago

10.1016/j.jmb.2016.07.003

Chopping and Changing: the Evolution of the Flavin-dependent Monooxygenases
Cited by: 65
Author(s): María Laura Mascotti, Maximiliano Juri Ayub, Nicholas Furnham, Janet M. Thornton, Roman A. Laskowski
Software Mentions: 1
Published: about 10 years ago

10.1016/j.jmb.2011.03.033

Structural Analysis of a Novel Class of R–M Controller Proteins: C.Csp231I from Citrobacter sp. RFL231
Cited by: 12
Author(s): J.E. McGeehan, Simon Streeter, Sarah Thresh, James E. Taylor, M.B. Shevtsov, Geoff Kneale
Software Mentions: 1
Published: about 15 years ago

10.1016/j.jmb.2012.01.043

Micrococcal Nuclease Does Not Substantially Bias Nucleosome Mapping
Cited by: 69
Author(s): James Allan, Ross M. Fraser, Tom Owen-Hughes, David Keszenman-Pereyra
Software Mentions: 1
Published: over 14 years ago

10.1016/j.jmb.2013.09.018

Subunit Positioning and Stator Filament Stiffness in Regulation and Power Transmission in the V1 Motor of the Manduca sexta V-ATPase
Cited by: 22
Author(s): Stephen P. Muench, Sjors H.W. Scheres, Markus Huss, Clair Phillips, Olga Vitavska, Helmut Wieczorek, John Trinick, Michael A. Harrison
Software Mentions: 1
Published: over 12 years ago

10.1016/j.jmb.2019.04.022

Mechanisms of σ54-Dependent Transcription Initiation and Regulation
Cited by: 42
Author(s): Amy E. Danson, Milija Jovanovic, Martin Buck, Xiaodong Zhang
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.jmb.2008.04.070

Ribonuclease A Homologues of the Zebrafish: Polymorphism, Crystal Structures of Two Representatives and their Evolutionary Implications
Cited by: 23
Author(s): K. Kazakou, Daniel E. Holloway, Stephen H. Prior, Vasanta Subramanian, K. Ravi Acharya
Software Mentions: 1
Published: about 18 years ago

10.1016/j.jmb.2012.07.010

Gating Movement of Acetylcholine Receptor Caught by Plunge-Freezing
Cited by: 174
Author(s): Nigel Unwin, Yoshinori Fujiyoshi
Software Mentions: 1
Published: almost 14 years ago

10.1016/j.jmb.2011.02.020

Crystal Structure of R120G Disease Mutant of Human αB-Crystallin Domain Dimer Shows Closure of a Groove
Cited by: 106
Author(s): Alice R. Clark, C.E. Naylor, Claire Bagnéris, Nicholas H. Keep, C. Slingsby
Software Mentions: 1
Published: over 15 years ago

10.1016/j.jmb.2008.12.033

Insights into the Conformational Variability and Regulation of Human Nek2 Kinase
Cited by: 48
Author(s): Isaac M. Westwood, Donna-Marie Cheary, Joanne E. Baxter, Mark W. Richards, R.L.M. van Montfort, Andrew M. Fry, Richard Bayliss
Software Mentions: 1
Published: over 17 years ago

10.1016/j.jmb.2010.06.028

Interactions of the Melanocortin-4 Receptor with the Peptide Agonist NDP-MSH
Cited by: 20
Author(s): Kathryn Chapman, Gemma K. Kinsella, Alan Cox, Dan Donnelly, John B. C. Findlay
Software Mentions: 1
Published: almost 16 years ago

10.1530/JME-16-0024

Antiestrogens: structure-activity relationships and use in breast cancer treatment
Cited by: 61
Author(s): Tatiana Traboulsi, Mohamed El Ezzy, James L. Gleason, Sylvie Mader
Software Mentions: 1
Published: over 9 years ago

10.1007/s00239-014-9639-7

One origin for metallo-β-lactamase activity, or two? An investigation assessing a diverse set of reconstructed ancestral sequences based on a sample of phylogenetic trees
Cited by: 21
Author(s): Rosanna Grace Alderson, Daniel Barker, John B. O. Mitchell
Software Mentions: 1
Published: almost 12 years ago

10.1186/1750-2187-6-2

Activation of &lt;em&gt;K-RAS&lt;/em&gt; by co-mutation of codons 19 and 20 is transforming
Cited by: 24
Author(s): Adam Naguib, Catherine H. Wilson, David J. Adams, Mark J. Arends
Software Mentions: 1
Published: over 15 years ago

10.1186/1750-2187-8-3

Determinants at the N- and C-termini of Gα&lt;sub&gt;12&lt;/sub&gt; required for activation of Rho-mediated signaling
Cited by: 9
Author(s): Benjamin J. Ritchie, William C. Smolski, Ellyn R Montgomery, Elizabeth S. Fisher, Tina Young Choi, Calla Olson, Lori A Foster, Thomas E. Meigs
Software Mentions: 1
Published: over 13 years ago

10.3892/ol.2013.1679

Analysis of the anticancer activity of curcuminoids, thiotryptophan and 4-phenoxyphenol derivatives
Cited by: 18
Author(s): Shireen Parsai, Rick W. Keck, Ewa Skrzypczak‐Jankun, Jerzy Jankun
Software Mentions: 1
Published: over 12 years ago

10.7554/eLife.01211

Multiple interfaces between a serine recombinase and an enhancer control site-specific DNA inversion
Cited by: 20
Author(s): Meghan M. McLean, Yong Keun Chang, Gautam Dhar, John K. Heiss, Reid C. Johnson
Software Mentions: 1
Published: over 12 years ago

10.7554/eLife.39451

Redox-dependent rearrangements of the NiFeS cluster of carbon monoxide dehydrogenase
Cited by: 42
Author(s): E.C. Wittenborn, Mériem Merrouch, Chie Ueda, Laura Fradale, Christophe Léger, Vincent Fourmond, Maria-Eirini Pandelia, Sébastien Dementin, Catherine L. Drennan
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.54469

R-spondins engage heparan sulfate proteoglycans to potentiate WNT signaling
Cited by: 32
Author(s): Ramin Dubey, Peter van Kerkhof, Ingrid Jordens, Tomas Malinauskas, Ganesh V. Pusapati, Joseph K McKenna, Dan Li, Jan E. Carette, Mitchell Ho, Christian Siebold, Madelon M. Maurice, Andres M. Lebensohn, Rajat Rohatgi
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.13909

Quality control in oocytes by p63 is based on a spring-loaded activation mechanism on the molecular and cellular level
Cited by: 52
Author(s): Daniel Coutandin, Christian Osterburg, Ratnesh Kumar Srivastav, Manuela Sumyk, Sebastian Kehrloesser, Jakob Gebel, Marcel Tuppi, Jens Hannewald, Björn Malte Schäfer, E. Salah, Sebastian Mathea, Uta Müller-Kuller, James Doutch, Manuel Grez, Stefan Knapp, Volker Dötsch
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.03433

Analysis of the crystal structure of an active MCM hexamer
Cited by: 52
Author(s): Justin M. Miller, Buenafe T. Arachea, L.B. Epling, Eric J. Enemark
Software Mentions: 1
Published: almost 12 years ago

10.7554/eLife.37138

Human gut Bacteroides capture vitamin B12 via cell surface-exposed lipoproteins
Cited by: 51
Author(s): Aaron G. Wexler, Whitman B. Schofield, Patrick H. Degnan, Ewa Folta‐Stogniew, Natasha A. Barry, Andrew L. Goodman
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.11134

cryo-EM structures of the E. coli replicative DNA polymerase reveal its dynamic interactions with the DNA sliding clamp, exonuclease and τ
Cited by: 76
Author(s): Rafael Fernández-Leiro, Julian Conrad, Sjors H.W. Scheres, Meindert H. Lamers
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.01993

A conserved MCM single-stranded DNA binding element is essential for replication initiation
Cited by: 70
Author(s): C.A. Froelich, Sung-Myung Kang, L.B. Epling, Stephen P. Bell, Eric J. Enemark
Software Mentions: 1
Published: over 12 years ago

10.7554/eLife.20198

Relief of autoinhibition by conformational switch explains enzyme activation by a catalytically dead paralog
Cited by: 18
Author(s): Oleg A. Volkov, Lisa N. Kinch, Carson Ariagno, Xingming Deng, Shihua Zhong, Nick V. Grishin, Diana R. Tomchick, James Z. Chen, Margaret A. Phillips
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.12548

Structural basis for activation, assembly and membrane binding of ESCRT-III Snf7 filaments
Cited by: 118
Author(s): Shaogeng Tang, W. Mike Henne, Peter P. Borbat, Nicholas J. Buchkovich, Jack H. Freed, Yuxin Mao, J. Christopher Fromme, Scott D. Emr
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.17877

Exosome complex orchestrates developmental signaling to balance proliferation and differentiation during erythropoiesis
Cited by: 29
Author(s): Skye C McIver, Koichi R. Katsumura, Elsa Davids, Peng Liu, Yoon-A Kang, David T. Yang, Emery H. Bresnick
Software Mentions: 1
Published: almost 10 years ago

10.7554/eLife.51636

SIRT6 is a DNA double-strand break sensor
Cited by: 79
Author(s): Lior Onn, Miguel Portillo, Stefan Ilić, Gal Cleitman, Daniel Stein, Shai Kaluski, Ido Shirat, Zeev Slobodnik, Monica Einav, Fabian Erdel, Barak Akabayov, Debra Toiber
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.65699

Cryo-EM structure of the yeast TREX complex and coordination with the SR-like protein Gbp2
Cited by: 13
Author(s): Yihu Xie, Bradley P. Clarke, Yong Joon Kim, Austin L. Ivey, Pate S. Hill, Yi Shi, Yi Ren
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.34055

Cdc48-like protein of actinobacteria (Cpa) is a novel proteasome interactor in mycobacteria and related organisms
Cited by: 13
Author(s): Michał Ziemski, Ahmad Jomaa, Daniel Mayer, Sonja Rutz, Christoph Giese, Dmitry B. Veprintsev, Eilika Weber‐Ban
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.29154

Site-specific monoubiquitination downregulates Rab5 by disrupting effector binding and guanine nucleotide conversion
Cited by: 23
Author(s): Dong Hyuk Shin, Wooju Na, Ji Hyung Lee, Gyuhee Kim, Jiseok Baek, Seok Hee Park, Cheol Yong Choi, Sang-Ho Lee
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.64056

Molecular insights into substrate recognition and discrimination by the N-terminal domain of Lon AAA+ protease
Cited by: 13
Author(s): Shiou‐Ru Tzeng, Yin-Chu Tseng, Chien‐Chu Lin, Chia-Ying Hsu, Shing‐Jong Huang, Yi-Ting Kuo, Chin-Fu Chang
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.60030

Structure of MlaFB uncovers novel mechanisms of ABC transporter regulation
Cited by: 31
Author(s): Ljuvica Kolich, Ya-Ting Chang, Nicolas Coudray, Sabrina I. Giacometti, M.R. MacRae, Georgia L. Isom, Evelyn M Teran, Gira Bhabha, D.C. Ekiert
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.64411

Characterization and functional analysis of cathelicidin-MH, a novel frog-derived peptide with anti-septicemic properties
Cited by: 22
Author(s): Jinwei Chai, Xin Chen, Tiaofei Ye, Baishuang Zeng, Qingye Zeng, Jiena Wu, Barbora Kaščáková, Larissa Almeida Martins, Tatyana Prudniková, Ivana Kutá Smatanová, Michail Kotsyfakis, Xueqing Xu
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.12095

The acidic domain of the endothelial membrane protein GPIHBP1 stabilizes lipoprotein lipase activity by preventing unfolding of its catalytic domain
Cited by: 67
Author(s): Simon Mysling, Kristian Kølby Kristensen, Mikael Larsson, Anne P. Beigneux, Henrik Gårdsvoll, Loren G. Fong, André Bensadouen, Thomas J. D. Jørgensen, Stephen G. Young, Michael Ploug
Software Mentions: 1
Published: over 10 years ago