10.1074/jbc.RA119.011098

Neutrophil myeloperoxidase harbors distinct site-specific peculiarities in its glycosylation
Cited by: 34
Author(s): Karli R. Reiding, Vojtěch Franc, Minke G. Huitema, Elisabeth Brouwer, Peter Heeringa, Albert J. R. Heck
Software Mentions: 1
Published: over 6 years ago

10.1074/jbc.RA119.012078

Single-molecule imaging analysis reveals the mechanism of a high-catalytic-activity mutant of chitinase A from Serratia marcescens
Cited by: 10
Author(s): Akasit Visootsat, Akihiko Nakamura, Paul Vignon, Hiroki Watanabe, Takayuki Uchihashi, Ryota Iino
Software Mentions: 1
Published: over 6 years ago

10.1074/jbc.RA119.010221

A transient amphipathic helix in the prodomain of PCSK9 facilitates binding to low-density lipoprotein particles
Cited by: 14
Author(s): Samantha K. Sarkar, Alexander C. Y. Foo, Angela Matyas, Ikhuosho Asikhia, Tanja Kosenko, Natalie K. Goto, Ariela Vergara-Jaque, Thomas A. Lagace
Software Mentions: 1
Published: over 6 years ago

10.1074/jbc.RA119.010645

HLA-DM catalytically enhances peptide dissociation by sensing peptide–MHC class II interactions throughout the peptide-binding cleft
Cited by: 9
Author(s): Eduardo Reyes-Vargas, Adam P. Barker, Zemin Zhou, He Xiao, Peter E. Jensen
Software Mentions: 1
Published: over 6 years ago

10.1074/jbc.RA120.012783

Mammalian lectin arrays for screening host–microbe interactions
Cited by: 12
Author(s): Sabine A. F. Jégouzo, Conor Nelson, Thomas Hardwick, Suet‐Ping Wong, Noel Kuan Kiat Lau, Gaik Kin Emily Neoh, Rocío Castellanos-Rueda, Zhiyao Huang, Benjamin Mignot, Aanya Hirdaramani, Annie Howitt, Kathryn Frewin, Zheng Ming Shen, Rhys Fox, Rachel Wong, Momoko Ando, Lauren Emony, Henderson Zhu, Angela Holder, Dirk Werling, Nitya Krishnan, Abigail Clements, Maureen E. Taylor, Kurt Drickamer
Software Mentions: 1
Published: over 6 years ago

10.1074/jbc.RA120.012695

Effects of deficiency in the RLBP1-encoded visual cycle protein CRALBP on visual dysfunction in humans and mice
Cited by: 23
Author(s): José Ronaldo Lima de Carvalho, Hye Jin Kim, Keiko Ueda, Jin Zhao, Aaron P. Owji, Tingting Yang, Stephen H. Tsang, Janet R. Sparrow
Software Mentions: 1
Published: about 6 years ago

10.1074/jbc.RA120.012892

eGFP-tagged Wnt-3a enables functional analysis of Wnt trafficking and signaling and kinetic assessment of Wnt binding to full-length Frizzled
Cited by: 21
Author(s): Janine Wesslowski, Paweł Kozielewicz, Xianxian Wang, Haijun Cui, Hannes Schihada, D Kranz, Pradhipa Karuna M, Pavel A. Levkin, Julia Christina Gross, Michael Boutros, Gunnar Schulte, Gary Davidson
Software Mentions: 1
Published: about 6 years ago

10.1074/jbc.RA120.013136

The structure and reactivity of the HoxEFU complex from the cyanobacterium Synechocystis sp. PCC 6803
Cited by: 14
Author(s): Jacob H. Artz, Monika Tokmina‐Lukaszewska, David W. Mulder, Carolyn E. Lubner, Kirstin Gutekunst, Jens Appel, Brian Bothner, Marko Boehm, Paul W. King
Software Mentions: 1
Published: about 6 years ago

10.1074/jbc.REV120.011473

Role of the lipid bilayer in outer membrane protein folding in Gram-negative bacteria
Cited by: 73
Author(s): Jim E. Horne, David J. Brockwell, Sheena E. Radford
Software Mentions: 1
Published: about 6 years ago

10.1074/jbc.RA120.014016

T cell receptor interactions with human leukocyte antigen govern indirect peptide selectivity for the cancer testis antigen MAGE-A4
Cited by: 18
Author(s): C.H. Coles, Catriona McMurran, Alun G. Lloyd, M. Benjamin Hock, Linda Hibbert, M.C.C. Raman, Conor Hayes, P.J. Lupardus, D.K. Cole, Stephen Harper
Software Mentions: 1
Published: almost 6 years ago

10.1074/jbc.RA119.009811

Intracerebroventricular enzyme replacement therapy with β-galactosidase reverses brain pathologies due to GM1 gangliosidosis in mice
Cited by: 27
Author(s): Joseph C. Chen, Amanda Luu, Nathan Wise, Rolando De Angelis, Vishal Agrawal, Linley Mangini, Jon Vincelette, Britta Handyside, Harry J. Sterling, Melanie J. Lo, Hio Wong, Nicole Galicia, Glenn Pacheco, Jeremy Van Vleet, Alexander Giaramita, Sylvia Fong, Sushmita Roy, Chuck Hague, Roger Lawrence, Sherry Bullens, Terri Christianson, Alessandra d’Azzo, Brett E. Crawford, Stuart Bunting, Jonathan H. LeBowitz, Gouri Yogalingam
Software Mentions: 1
Published: almost 6 years ago

10.1074/jbc.RA120.014135

Characterizing the binding and function of TARP γ8-selective AMPA receptor modulators
Cited by: 17
Author(s): Jan-Niklas Dohrke, Jake F. Watson, Kristian Birchall, Ingo H. Greger
Software Mentions: 1
Published: almost 6 years ago

10.1074/jbc.RA120.014177

Tandem sialoglycan-binding modules in a Streptococcus sanguinis serine-rich repeat adhesin create target dependent avidity effects
Cited by: 2
Author(s): Haley Stubbs, Barbara A. Bensing, Izumi Yamakawa, Pankaj Sharma, Hai Yu, Xi Chen, Paul M. Sullam, T.M. Iverson
Software Mentions: 1
Published: almost 6 years ago

10.1074/jbc.RA120.014792

Domain architecture divergence leads to functional divergence in binding and catalytic domains of bacterial and fungal cellobiohydrolases
Cited by: 11
Author(s): Akihiko Nakamura, Daiki Ishiwata, Akasit Visootsat, Taku Uchiyama, Kimihiko Mizutani, Satoshi Kaneko, Takeshi Murata, Kiyohiko Igarashi, Ryota Iino
Software Mentions: 1
Published: almost 6 years ago

10.1074/jbc.RA120.014366

Evolutionary selection of a 19-stranded mitochondrial β-barrel scaffold bears structural and functional significance
Cited by: 12
Author(s): Shashank Srivastava, Radhakrishnan Mahalakshmi
Software Mentions: 1
Published: almost 6 years ago

10.1074/jbc.RA120.014705

The C-terminal region of the plasmid partitioning protein TubY is a tetramer that can bind membranes and DNA
Cited by: 1
Author(s): Ikuko Hayashi
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.RA120.015645

Mapping the transition state for a binding reaction between ancient intrinsically disordered proteins
Cited by: 10
Author(s): Elin Karlsson, Cristina Paissoni, Amanda M. Erkelens, Zeinab Amiri-Tehranizadeh, Frieda A. Sorgenfrei, Eva Andersson, Weihua Ye, Carlo Camilloni, Per Jemth
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.RA120.014695

Mouse Ifit1b is a cap1-RNA–binding protein that inhibits mouse coronavirus translation and is regulated by complexing with Ifit1c
Cited by: 4
Author(s): Harriet V Mears, Trevor R. Sweeney
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.RA120.014145

The cation diffusion facilitator protein MamM's cytoplasmic domain exhibits metal-type dependent binding modes and discriminates against Mn2+
Cited by: 3
Author(s): S. Barber-Zucker, Jenny Hall, Afonso Froes, Sofiya Kolusheva, Fraser MacMillan, Raz Zarivach
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.RA120.014780

Identification of compounds that bind the centriolar protein SAS-6 and inhibit its oligomerization
Cited by: 2
Author(s): J. Busch, Minos‐Timotheos Matsoukas, Maria Musgaard, Georgios A. Spyroulias, Philip C. Biggin, Ioannis Vakonakis
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.RA120.014883

Nitro-fatty acids as activators of hSIRT6 deacetylase activity
Cited by: 13
Author(s): Mara Carreño, Mariana Bresque, Matías Machado, Leonardo Santos, Rosario Durán, Darío A. Vitturi, Carlos Escande, Ana Denicola
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.RA120.016105

Molecular characterization of the RNA-protein complex directing −2/−1 programmed ribosomal frameshifting during arterivirus replicase expression
Cited by: 9
Author(s): Ankoor Patel, Emmely E. Treffers, Markus Meier, Trushar R. Patel, Jörg Stetefeld, Eric J. Snijder, Brian L. Mark
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.RA119.012056

Exploitation of dihydroorotate dehydrogenase (DHODH) and p53 activation as therapeutic targets: A case study in polypharmacology
Cited by: 9
Author(s): Marcus J.G.W. Ladds, Gergana Popova, Andrés Pastor Fernández, Srinivasaraghavan Kannan, Ingeborg M.M. van Leeuwen, Maria Håkansson, Björn Walse, Fredrik Tholander, Ravi Bhatia, Chandra Verma, David P. Lane, Sonia Laı́n
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.RA120.015553

GUCY2D mutations in retinal guanylyl cyclase 1 provide biochemical reasons for dominant cone–rod dystrophy but not for stationary night blindness
Cited by: 9
Author(s): Igor V. Peshenko, Elena V. Olshevskaya, Alexander M. Dizhoor
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.RA120.016457

Determinants of replication protein A subunit interactions revealed using a phosphomimetic peptide
Cited by: 3
Author(s): Sung‐Jin Lee, Jeongbeen Heo, Chin‐Ju Park
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.RA120.016149

Unique active-site and subsite features in the arabinogalactan-degrading GH43 exo-β-1,3-galactanase from Phanerochaete chrysosporium
Cited by: 3
Author(s): Kiminori Matsuyama, N. Kishine, Zui Fujimoto, Naoki Sunagawa, Toshihisa Kotake, Yoichi Tsumuraya, Masahiro Samejima, Kiyohiko Igarashi, Satoshi Kaneko
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.RA120.016352

The evolution and mechanism of GPCR proton sensing
Cited by: 24
Author(s): Jacob B. Rowe, Nicholas J. Kapolka, Geoffrey J. Taghon, William M. Morgan, Daniel G. Isom
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.RA120.015952

Crystal structures of γ-glutamylmethylamide synthetase provide insight into bacterial metabolism of oceanic monomethylamine
Cited by: 2
Author(s): Ning Wang, Xiu-Lan Chen, Chao Gao, Ming Peng, Peng Wang, Na Zhang, Fuchuan Li, Gui‐Peng Yang, Qing-Tao Shen, Shengying Li, Yin Chen, Yuzhong Zhang, Chunyang Li
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.RA120.016297

Ancestral reconstruction of mammalian FMO1 enables structural determination, revealing unique features that explain its catalytic properties
Cited by: 9
Author(s): Gautier Bailleul, Callum R. Nicoll, María Laura Mascotti, Andrea Mattevi, Marco W. Fraaije
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.RA120.015996

Structural basis for antigen recognition by methylated lysine–specific antibodies
Cited by: 6
Author(s): M. Ishii, Makoto Nakakido, José M. M. Caaveiro, Daisuke Kuroda, C.J. Okumura, Toshiaki Maruyama, Kevin C. Entzminger, Kouhei Tsumoto
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.RA120.016542

Structure of transmembrane prolyl 4-hydroxylase reveals unique organization of EF and dioxygenase domains
Cited by: 4
Author(s): Matti Myllykoski, Aleksi Sutinen, M.K. Koski, J.P. Kallio, Arne Raasakka, Johanna Myllyharju, Rik K. Wierenga, Peppi Koivunen
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.RA120.014956

Mutational analysis of the alpha subunit of eIF2B provides insights into the role of eIF2B bodies in translational control and VWM disease
Cited by: 6
Author(s): Karl Norris, Rachel E Hodgson, Tawni Dornelles, Kyle Allen, Benjamin Abell, Mark P. Ashe, Susan G. Campbell
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.RA120.016271

Crystal structure of higher plant heme oxygenase-1 and its mechanism of interaction with ferredoxin
Cited by: 7
Author(s): Rei Tohda, Hideaki Tanaka, Risa Mutoh, Xuhong Zhang, Young-Ho Lee, Tsuyoshi Konuma, Takahisa Ikegami, Catharina T. Migita, Genji Kurisu
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100255

A general chemical crosslinking strategy for structural analyses of weakly interacting proteins applied to preTCR–pMHC complexes
Cited by: 3
Author(s): Réka Mizsei, Xiaolong Li, Wan-Na Chen, Mónika Szabó, Jia-Huai Wang, Gerhard Wagner, Ellis L. Reinherz, Robert J. Mallis
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.RA120.016393

Structural basis for multifunctional roles of human Ints3 C-terminal domain
Cited by: 10
Author(s): Jian Li, Xiaofeng Ma, Surajit Banerjee, Sankar Baruah, Nicholas Schnicker, Eunmiri Roh, Weiya Ma, Kangdong Liu, Ann M. Bode, Zigang Dong
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.RA120.016818

Structure and mechanism of Staphylococcus aureus oleate hydratase (OhyA)
Cited by: 12
Author(s): C.D. Radka, Justin L. Batte, Matthew W. Frank, Brandon Young, Charles O. Rock
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.RA120.015932

Biochemical and crystallographic investigations into isonitrile formation by a nonheme iron-dependent oxidase/decarboxylase
Cited by: 14
Author(s): R. Jonnalagadda, Antonio Del Rio Flores, Wenlong Cai, Rimsha Mehmood, Maanasa Narayanamoorthy, Chaoxiang Ren, Jan Paulo T. Zaragoza, Heather J. Kulik, Wenjun Zhang, Catherine L. Drennan
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100343

Defective binding of SPINK1 variants is an uncommon mechanism for impaired trypsin inhibition in chronic pancreatitis
Cited by: 15
Author(s): András Szabó, Vanda Toldi, Lívia Diána Gazda, Alexandra Demcsák, József Tőzsér, Miklós Sahin‐Tóth
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100361

Disruption of the integrin-linked kinase (ILK) pseudokinase domain affects kidney development in mice
Cited by: 5
Author(s): Nada Bulus, Kyle L. Brown, Glenda Mernaugh, Anika Böttcher, Xinyu Dong, Charles R. Sanders, Ambra Pozzi, Reinhard Fässler, Roy Zent
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100308

Structural characterization of Myxococcus xanthus MglC, a component of the polarity control system, and its interactions with its paralog MglB
Cited by: 5
Author(s): Srajan Kapoor, Akriti Kodesia, Nidhi Kalidas, . Ashish, Krishan Gopal Thakur
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100360

Cross-linking and modification of fibronectin by peroxynitrous acid: Mapping and quantification of damage provides a new model for domain interactions
Cited by: 11
Author(s): Michele Mariotti, Adelina Rogowska-Wrzesińska, Per Hägglund, Michael J. Davies
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100350

Binding of calcium and magnesium to human cardiac troponin C
Cited by: 12
Author(s): Kaveh Rayani, Justin T Seffernick, Alison Yueh Li, Jonathan P. Davis, Anne M. Spuches, Filip Van Petegem, R. John Solaro, Steffen Lindert, Glen F. Tibbits
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100427

DNA ligase I fidelity mediates the mutagenic ligation of pol β oxidized and mismatch nucleotide insertion products in base excision repair
Cited by: 10
Author(s): Pradnya Kamble, Kalen Hall, Mahesh Chandak, Qun Tang, Melike Çağlayan
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100472

An experimental strategy to probe Gq contribution to signal transduction in living cells
Cited by: 16
Author(s): Julian Patt, Judith Alenfelder, Eva Marie Pfeil, Jan H. Voß, Nicole Merten, Funda Eryilmaz, Nina Heycke, Uli Rick, Asuka Inoue, Stefan Kehraus, Xavier Deupí, Christa E. Müller, Gabriele M. König, Max Crüsemann, Evi Kostenis
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100463

Characterization of two enzymes from Psychrobacter cryohalolentis that are required for the biosynthesis of an unusual diacetamido-d-sugar
Cited by: 6
Author(s): M.P. Linehan, James B. Thoden, Hazel M. Holden
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100492

Structure of 3-mercaptopropionic acid dioxygenase with a substrate analog reveals bidentate substrate binding at the iron center
Cited by: 10
Author(s): Nicholas J York, Molly M. Lockart, Sinjinee Sardar, Nimesh Khadka, Wuxian Shi, Ronald E. Stenkamp, Jianye Zhang, Philip D. Kiser, Brad S. Pierce
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100458

Ca2+-saturated calmodulin binds tightly to the N-terminal domain of A-type fibroblast growth factor homologous factors
Cited by: 9
Author(s): Ryan Mahling, Cade R. Rahlf, Samuel C. Hansen, Matthew R. Hayden, Madeline A. Shea
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100545

TGF-β-induced cell motility requires downregulation of ARHGAPs to sustain Rac1 activity
Cited by: 3
Author(s): Mitsuyoshi Motizuki, Daizo Koinuma, Takashi Yokoyama, Yoshio Itoh, Chiho Omata, Kohei Miyazono, Masao Saitoh, Keiji Miyazawa
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100612

Functional mechanisms of MYRF DNA-binding domain mutations implicated in birth defects
Cited by: 7
Author(s): Chuandong Fan, Hongjoo An, Mohamed Sharif, Dongkyeong Kim, Yungki Park
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100693

Intrinsically disordered substrates dictate SPOP subnuclear localization and ubiquitination activity
Cited by: 13
Author(s): Grace A. Usher, Nafiseh Sabri, Roman Rohac, Amie K. Boal, Tanja Mittag, Scott A. Showalter
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100749

Moving beyond static snapshots: Protein dynamics and the Protein Data Bank
Cited by: 28
Author(s): Mitchell D. Miller, G.N. Phillips
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100715

Regulation of tau internalization, degradation, and seeding by LRP1 reveals multiple pathways for tau catabolism
Cited by: 42
Author(s): Joanna M. Cooper, Aurélien Lathuilière, Mary Migliorini, Allison L. Arai, Mashhood Wani, Simon Dujardin, Selen C. Muratoglu, Bradley T. Hyman, Dudley K. Strickland
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100658

Molecular basis for diaryldiamine selectivity and competition with tRNA in a type 2 methionyl-tRNA synthetase from a Gram-negative bacterium
Cited by: 4
Author(s): Gustavo Fernando Mercaldi, Maxuel O. Andrade, Jackeline de Lima Zanella, Artur T. Cordeiro, Celso Eduardo Benedetti
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100758

Structural and functional analysis of lignostilbene dioxygenases from Sphingobium sp. SYK-6
Cited by: 7
Author(s): Eugene Kuatsjah, Anson Chan, Rui Katahira, Stefan J. Haugen, Gregg T. Beckham, M.E.P. Murphy, Lindsay D. Eltis
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100772

Crystal structure and mutational analysis of the human TRIM7 B30.2 domain provide insights into the molecular basis of its binding to glycogenin-1
Cited by: 5
Author(s): Christian J. Muñoz Sosa, Federico M. Issoglio, M.E. Carrizo
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100798

Functional impact of intramolecular cleavage and dissociation of adhesion G protein–coupled receptor GPR133 (ADGRD1) on canonical signaling
Cited by: 19
Author(s): Joshua D. Frenster, Gabriele Stephan, Niklas Ravn-Boess, Devin Bready, Jordan Wilcox, Bjoern Kieslich, Caroline Wilde, Norbert Sträter, Giselle R. Wiggin, Ines Liebscher, Torsten Schöneberg, Dimitris G. Placantonakis
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100829

Long-range allostery mediates cooperative adenine nucleotide binding by the Ski2-like RNA helicase Brr2
Cited by: 2
Author(s): Eva Absmeier, Karen Vester, Tahereh Ghane, Dmitry Burakovskiy, Pohl Milón, Petra Imhof, Marina V. Rodnina, K.F. Santos, Markus C. Wahl
Software Mentions: 1
Published: about 5 years ago

10.1016/j.jbc.2021.100842

Molecular chaperone RAP interacts with LRP1 in a dynamic bivalent mode and enhances folding of ligand-binding regions of other LDLR family receptors
Cited by: 4
Author(s): Ekaterina Marakasova, Philip Olivares, Elena Karnaukhova, Haarin Chun, Nancy Hernandez, James H Kurasawa, Gabriela U. Hassink, Svetlana A Shestopal, Dudley K. Strickland, Andrey G. Sarafanov
Software Mentions: 1
Published: about 5 years ago

10.1016/j.jbc.2021.100899

Regulation of a pentameric ligand-gated ion channel by a semiconserved cationic lipid-binding site
Cited by: 11
Author(s): Akshay Sridhar, Sarah C. R. Lummis, Diletta Pasini, Aujan Mehregan, Marijke Brams, Kumiko Kambara, Daniel Bertrand, Erik Lindahl, Rebecca J. Howard, Chris Ulens
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.jbc.2021.100928

GSK137, a potent small-molecule BCL6 inhibitor with in vivo activity, suppresses antibody responses in mice
Cited by: 9
Author(s): Andrew C. Pearce, Mark J. Bamford, Ruth Barber, Angela Bridges, M.A. Convery, Constantinos Demetriou, Siân Evans, Thomas Gobbetti, David Hirst, Duncan S. Holmes, Jonathan P. Hutchinson, Sandrine Jayne, Larissa Lezina, Michael T. McCabe, Cassie Messenger, J. Morley, Melissa C. Musso, Paul Scott‐Stevens, Ana Sousa Manso, J. A. Schofield, Tom Slocombe, Don O. Somers, Ann L. Walker, Anastasia Wyce, Xiping Zhang, Simon D. Wagner
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.jbc.2021.100966

Structural details of monoclonal antibody m971 recognition of the membrane-proximal domain of CD22
Cited by: 7
Author(s): June Ereño‐Orbea, Xianglei Liu, Taylor Sicard, Iga Kucharska, Wei Li, Dorota Borovsky, Hong Cui, Feng Yang, Dimiter S. Dimitrov, Jean-Philippe Julien
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.jbc.2021.100981

Sequence variation in the β7–β8 loop of bacterial class A sortase enzymes alters substrate selectivity
Cited by: 10
Author(s): Isabel M. Piper, Sarah A. Struyvenberg, Jordan D. Valgardson, D. Alex Johnson, Melody Gao, Kerrylyn Johnston, Justin E. Svendsen, Hanna M. Kodama, Kelli L. Hvorecny, John M. Antos, J.F. Amacher
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.jbc.2021.101028

Minimal protein-only RNase P structure reveals insights into tRNA precursor recognition and catalysis
Cited by: 8
Author(s): Takamasa Teramoto, Takeshi Koyasu, Naruhiko Adachi, Masato Kawasaki, Toshio Moriya, T. Numata, Toshiya Senda, Yoshimitsu Kakuta
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.jbc.2021.101039

Disease-associated mutations impacting BC-loop flexibility trigger long-range transthyretin tetramer destabilization and aggregation
Cited by: 7
Author(s): Sebastián Esperante, Nathalia Varejão, Francisca Pinheiro, Ricardo Sant’Anna, Juan Román Luque‐Ortega, Carlos Alfonso, Valentina Sora, Elena Papaleo, Germán Rivas, David Reverter, Salvador Ventura
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.jbc.2021.101069

A three-pocket model for substrate coordination and selectivity by the nucleotide sugar transporters SLC35A1 and SLC35A2
Cited by: 2
Author(s): Danyang Li, Somshuvra Mukhopadhyay
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.jbc.2021.101095

PROFICS: A bacterial selection system for directed evolution of proteases
Cited by: 2
Author(s): Christina Kröß, Petra Engele, Bernhard Sprenger, Andreas Fischer, Nico Lingg, Magdalena Baier, Christoph Öhlknecht, Bettina Lier, Chris Oostenbrink, Monika Cserjan‐Puschmann, Gerald Striedner, Alois Jungbauer, Rainer Schneider
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.jbc.2021.101084

Structural and functional variation of chitin-binding domains of a lytic polysaccharide monooxygenase from Cellvibrio japonicus
Cited by: 11
Author(s): Eva Madland, Zarah Forsberg, Yong Wang, Kresten Lindorff‐Larsen, Axel Niebisch, Jan Modregger, Vincent G. H. Eijsink, Finn Lillelund Aachmann, Gastón Courtade
Software Mentions: 1
Published: almost 5 years ago

10.1007/s00775-018-1575-3

On how the binding cavity of AsqJ dioxygenase controls the desaturation reaction regioselectivity: a QM/MM study
Cited by: 26
Author(s): Zuzanna Wojdyła, Tomasz Borowski
Software Mentions: 1
Published: about 8 years ago

10.1007/s00775-018-1586-0

Preparation and characterization of metal-substituted carotenoid cleavage oxygenases
Cited by: 10
Author(s): Xuewu Sui, Erik R. Farquhar, Hannah Hill, Johannes von Lintig, Wuxian Shi, Philip D. Kiser
Software Mentions: 1
Published: about 8 years ago

10.1007/s00775-018-1583-3

Ether cross-link formation in the R2-like ligand-binding oxidase
Cited by: 8
Author(s): Julia J. Griese, Rui M. Branca, Vivek Srinivas, Martin Högbom
Software Mentions: 1
Published: about 8 years ago

10.1007/s00775-019-01703-z

Redox-induced structural changes in the di-iron and di-manganese forms of Bacillus anthracis ribonucleotide reductase subunit NrdF suggest a mechanism for gating of radical access
Cited by: 9
Author(s): K. Grave, Wietske Lambert, Gustav Berggren, Julia J. Griese, M.D. Bennett, D.T. Logan, Martin Högbom
Software Mentions: 1
Published: almost 7 years ago

10.1007/s00775-020-01759-2

Distinctive structural properties of THB11, a pentacoordinate Chlamydomonas reinhardtii truncated hemoglobin with N- and C-terminal extensions
Cited by: 2
Author(s): Dennis Huwald, Sabrina Duda, Raphael Gasper, V. Oliéric, Eckhard Hofmann, Anja Hemschemeier
Software Mentions: 1
Published: over 6 years ago

10.1007/s00775-020-01782-3

The Bacillus anthracis class Ib ribonucleotide reductase subunit NrdF intrinsically selects manganese over iron
Cited by: 14
Author(s): K. Grave, Julia J. Griese, Gustav Berggren, M.D. Bennett, Martin Högbom
Software Mentions: 1
Published: about 6 years ago

10.1007/s00775-020-01790-3

Metalation: nature’s challenge in bioinorganic chemistry
Cited by: 12
Author(s): Nigel J. Robinson, Arthur Glasfeld
Software Mentions: 1
Published: about 6 years ago

10.1007/s00775-020-01784-1

A traffic light enzyme: acetate binding reversibly switches chlorite dismutase from a red- to a green-colored heme protein
Cited by: 2
Author(s): Durga Mahor, Julia Püschmann, Menno van den Haak, Pepijn J. Kooij, David L. J. van Den Ouden, Marc J. F. Strampraad, Bérnard Srour, Peter‐Leon Hagedoorn
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.ppat.1008190

DNA replication protein Cdc45 directly interacts with PCNA via its PIP box in Leishmania donovani and the Cdc45 PIP box is essential for cell survival
Cited by: 5
Author(s): Arti Yadav, Varshni Sharma, Jyoti Pal, Pallavi Gulati, Manisha Goel, Udita Chandra, Neelam Bansal, Swati Saha
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.ppat.1008647

Engineered receptors for human cytomegalovirus that are orthogonal to normal human biology
Cited by: 10
Author(s): Jihye Park, Kevin S. Gill, Ali Asghar Aghajani, Jeremiah D. Heredia, Hannah Choi, Adam Oberstein, Erik Procko
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.ppat.1008702

Dissecting distinct proteolytic activities of FMDV Lpro implicates cleavage and degradation of RLR signaling proteins, not its deISGylase/DUB activity, in type I interferon suppression
Cited by: 23
Author(s): Lenneke de Visser, Chiara Aloise, Kirby N. Swatek, Gisselle N. Medina, Karin M. Olek, Huib H. Rabouw, Raoul J. de Groot, Martijn A. Langereis, Teresa de los Santos, David Komander, Tim Skern, Frank J. M. van Kuppeveld
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.ppat.1008743

A cross-reactive antibody protects against Ross River virus musculoskeletal disease despite rapid neutralization escape in mice
Cited by: 8
Author(s): Julie M. Fox, Ling Huang, Stephen Tahan, Laura A. Powell, James E. Crowe, David Wang, Michael S. Diamond
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.ppat.1008773

NS5-V372A and NS5-H386Y variations are responsible for differences in interferon α/β induction and co-contribute to the replication advantage of Japanese encephalitis virus genotype I over genotype III in ducklings
Cited by: 17
Author(s): Chenxi Li, Di Di, Hui Huang, Xin Wang, Qiqi Xia, Xiaochun Ma, Ke Liu, Beibei Li, Donghua Shao, Yafeng Qiu, Zongjie Li, Jianchao Wei, Zhiyong Ma
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.ppat.1008857

Emergence of genotype C1 Enterovirus A71 and its link with antigenic variation of virus in Taiwan
Cited by: 12
Author(s): Kuan Ying A. Huang, Peng Huang, Yhu Chering Huang, Shu Yang, Kuo Chien Tsao, Cheng Hsun Chiu, Shin Ru Shih, Tzou Yien Lin
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.ppat.1008943

Convergent structural features of respiratory syncytial virus neutralizing antibodies and plasticity of the site V epitope on prefusion F
Cited by: 5
Author(s): Wayne Harshbarger, Sai Tian, Newton Wahome, Ankita Balsaraf, Deep Bhattacharya, Desheng Jiang, R. Pandey, Kunal Tungare, Kristian Friedrich, N. Mehzabeen, Marco Biancucci, Diana Chinchilla-Olszar, Corey P. Mallett, Ying Huang, Zihao Wang, Matthew J. Bottomley, E. Malito, Sumana Chandramouli
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009038

Tick-transmitted thogotovirus gains high virulence by a single MxA escape mutation in the viral nucleoprotein
Cited by: 6
Author(s): Jonas Fuchs, Alexander Oschwald, Laura Graf, Georg Kochs
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009100

Structural basis of RNA recognition by the SARS-CoV-2 nucleocapsid phosphoprotein
Cited by: 166
Author(s): Dhurvas Chandrasekaran Dinesh, Dominika Chalupská, Jan Šilhán, Eliška Koutná, Radim Nencka, Václav Veverka, Evžen Bouřa
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009169

Rationally designed Human Cytomegalovirus gB nanoparticle vaccine with improved immunogenicity
Cited by: 11
Author(s): Michela Perotti, Jessica Marcandalli, Davide Demurtas, Federica Sallusto, Laurent Perez
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009222

A novel sialic acid-binding adhesin present in multiple species contributes to the pathogenesis of Infective endocarditis
Cited by: 9
Author(s): Meztlli O. Gaytán, Anirudh Singh, Shireen A. Woodiga, Surina Patel, Seon-Sook An, Arturo Vera‐Ponce de León, Sean McGrath, Anthony R. Miller, Jocelyn M. Bush, Mark van der Linden, Vincent Magrini, Richard K. Wilson, Todd Kitten, Serina King
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009244

N-Glycans and sulfated glycosaminoglycans contribute to the action of diverse Tc toxins on mammalian cells
Cited by: 7
Author(s): Nan Song, Lihong Chen, Xingmei Ren, Nicholas R. Waterfield, Jian Yang, Guowei Yang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009102

Genome-wide dissection reveals diverse pathogenic roles of bacterial Tc toxins
Cited by: 18
Author(s): Nan Song, Lihong Chen, Zhemin Zhou, Xingmei Ren, Bo Liu, Siyu Zhou, Caihong Wang, Yun Wu, Nicholas R. Waterfield, Jian Yang, Guowei Yang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009407

A cross-neutralizing antibody between HIV-1 and influenza virus
Cited by: 19
Author(s): Chang-Chun David Lee, Yasunori Watanabe, Nicholas C. Wu, Julianna Han, Sonu Kumar, Tossapol Pholcharee, Gemma E. Seabright, Joel D. Allen, Chih-Wei Lin, Ji-Rong Yang, Ming‐Tsan Liu, Chung‐Yi Wu, Andrew B. Ward, Max Crispin, Ian A. Wilson
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009642

Structurally distinct external solvent-exposed domains drive replication of major human prions
Cited by: 5
Author(s): Mohammad Khursheed Siddiqi, Chae Kim, Tracy Haldiman, Miroslava Kacirova, Benlian Wang, Jen Bohon, Mark R. Chance, Janna Kiselar, Jiri Safar
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009624

Structural and genetic convergence of HIV-1 neutralizing antibodies in vaccinated non-human primates
Cited by: 2
Author(s): Fangping Cai, Wei‐Hung Chen, Weimin Wu, Julia A. Jones, Misook Choe, Neelakshi Gohain, Xiaoying Shen, Celia C. LaBranche, Amanda Eaton, Laura L. Sutherland, Esther M. Lee, Giovanna Hernandéz, Nelson R. Wu, Richard M. Scearce, Michael S. Seaman, M. Anthony Moody, Sampa Santra, Kevin Wiehe, Georgia D. Tomaras, Kshitij Wagh, Bette Korber, Mattia Bonsignori, David C. Montefiori, Barton F. Haynes, Natalia de Val, Michael Joyce, Kevin O. Saunders
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009543

Structurally related but genetically unrelated antibody lineages converge on an immunodominant HIV-1 Env neutralizing determinant following trimer immunization
Cited by: 5
Author(s): Safia Aljedani, Tyler Liban, Karen Tran, Ganesh E. Phad, Suruchi Singh, Viktoriya Dubrovskaya, Pradeepa Pushparaj, Paola Martinez-Murillo, Justas Rodarte, Alexander Mileant, Vidya Mangala Prasad, Rachel Kinzelman, Sijy O’Dell, John R. Mascola, Kelly K. Lee, Gunilla B. Karlsson Hedestam, Richard T. Wyatt, Marie Pancera
Software Mentions: 1
Published: almost 5 years ago

10.1186/1757-5036-2-2

An effective all-atom potential for proteins
Cited by: 64
Author(s): Anders Irbäck, Simon Mitternacht, Sandipan Mohanty
Software Mentions: 1
Published: over 17 years ago

10.1155/2017/4313561

Chiglitazar Preferentially Regulates Gene Expression via Configuration-Restricted Binding and Phosphorylation Inhibition of PPAR<i>γ</i>
Cited by: 24
Author(s): Desi Pan, Wei Wang, Nansong Liu, Qian‐Jiao Yang, Kun Zhang, Jing-Zhong Zhu, Shan Song, Zhibin Li, Zhiqiang Ning, Laiqiang Huang, Xianping Lu
Software Mentions: 1
Published: over 9 years ago

10.1155/2020/9657380

The PPAR<i>Ω</i>Pocket: Renewed Opportunities for Drug Development
Cited by: 9
Author(s): Åsmund Kaupang, Trond Vidar Hansen
Software Mentions: 1
Published: about 6 years ago

10.3390/polym10060615

Modulation of the Catalytic Properties of Lipase B from Candida antarctica by Immobilization on Tailor-Made Magnetic Iron Oxide Nanoparticles: The Key Role of Nanocarrier Surface Engineering
Cited by: 18
Author(s): Mario Viñambres, Marco Filice, Marzia Marciello
Software Mentions: 1
Published: about 8 years ago

10.3390/polym9090454

To Tie or Not to Tie? That Is the Question
Cited by: 38
Author(s): Paweł Dąbrowski-Tumański, Joanna I. Sułkowska
Software Mentions: 1
Published: almost 9 years ago

10.3390/polym11040707

Statistical Properties of Lasso-Shape Polymers and Their Implications for Complex Lasso Proteins Function
Cited by: 7
Author(s): Paweł Dąbrowski-Tumański, Bartosz Ambroży Greń, Joanna I. Sułkowska
Software Mentions: 1
Published: about 7 years ago

10.3390/polym11050801

A Way to Increase the Bioaccesibility and Photostability of Roflumilast, a COPD Treatment, by Cyclodextrin Monomers
Cited by: 15
Author(s): Adrián Matencio, Samanta Hernández-García, Francisco García-Carmona, José Manuel López‐Nicolás
Software Mentions: 1
Published: about 7 years ago

10.3390/polym11122104

Chemically Denatured Structures of Porcine Pepsin using Small-Angle X-ray Scattering
Cited by: 9
Author(s): Yecheol Rho, Jun Ha Kim, Byoungseok Min, Kyeong Sik Jin
Software Mentions: 1
Published: over 6 years ago