10.18632/aging.103775

Coupled immune stratification and identification of therapeutic candidates in patients with lung adenocarcinoma
Cited by: 9
Author(s): Wenquan Hu, Guosheng Wang, Yundi Chen, Lonny Yarmus, Biao Liu, Yuan Wan
Software Mentions: 2
Published: almost 6 years ago

10.1107/S2052252514024117

Macromolecular<i>ab initio</i>phasing enforcing secondary and tertiary structure
Cited by: 44
Author(s): Claudia Millán, Massimo Sammito, Isabel Usón
Software Mentions: 2
Published: over 11 years ago

10.1107/S205225251800386X

Enzyme catalysis captured using multiple structures from one crystal at varying temperatures
Cited by: 25
Author(s): Sam Horrell, D. Kekilli, Kakali Sen, Robin L. Owen, Florian Dworkowski, S.V. Antonyuk, Thomas W. Keal, Chin W. Yong, Robert R. Eady, S.S. Hasnain, R.W. Strange, Hough
Software Mentions: 2
Published: over 8 years ago

10.1107/S2052252518018274

A cytosine modification mechanism revealed by the structure of a ternary complex of deoxycytidylate hydroxymethylase from bacteriophage T4 with its cofactor and substrate
Cited by: 4
Author(s): Si Hoon Park, Se Won Suh, Hyun Kyu Song
Software Mentions: 2
Published: over 7 years ago

10.3389/fimmu.2017.00771

Nanobody Technology: A Versatile Toolkit for Microscopic Imaging, Protein–Protein Interaction Analysis, and Protein Function Exploration
Cited by: 142
Author(s): Els Beghein, Jan Gettemans
Software Mentions: 2
Published: about 9 years ago

10.1107/S2052252518001616

X-ray and cryo-EM structures of inhibitor-bound cytochrome<i>bc</i>₁complexes for structure-based drug discovery
Cited by: 20
Author(s): K. Amporndanai, Rachel M. Johnson, Paul M. O’Neill, Colin W. G. Fishwick, A.H. Jamson, Shaun Rawson, Stephen P. Muench, S.S. Hasnain, S.V. Antonyuk
Software Mentions: 2
Published: over 8 years ago

10.1107/S2052252515021259

Rapid experimental SAD phasing and hot-spot identification with halogenated fragments
Cited by: 26
Author(s): J.D. Bauman, Jerry Joe Ebow Kingsley Harrison, Eddy Arnold
Software Mentions: 2
Published: over 10 years ago

10.1186/1475-2875-13-313

Immunization against a merozoite sheddase promotes multiple invasion of red blood cells and attenuates Plasmodium infection in mice
Cited by: 3
Author(s): Ryan C. Smith, Daisy D. Colón-López, Jürgen Bosch
Software Mentions: 2
Published: almost 12 years ago

10.18632/aging.103396

Identification of cardiovascular health gene variants related to longevity in a Chinese population
Cited by: 3
Author(s): Li Zhang, Chen Bai, Chao Nie, Xiaoquan Zhu, Huiping Yuan, Liang Sun, Qi Zhou, Xiaoling Li, Xuan Xian, Fan Yang, Guo‐Fang Pang, Yuan Lv, Xiaolin Ni, Chengping Hu, Ze Yang
Software Mentions: 2
Published: almost 6 years ago

10.1107/S2052252520013494

Molecular-replacement phasing using predicted protein structures from <i>AWSEM-Suite</i>
Cited by: 9
Author(s): Shuang Jin, Mitchell D. Miller, M. Chen, Nicholas P. Schafer, Xin Lin, X. Chen, George N. Phillips, Peter G. Wolynes
Software Mentions: 2
Published: over 5 years ago

10.1186/s12906-018-2116-x

Computational investigations of physicochemical, pharmacokinetic, toxicological properties and molecular docking of betulinic acid, a constituent of Corypha taliera (Roxb.) with Phospholipase A2 (PLA2)
Cited by: 37
Author(s): Mohammad Firoz Khan, Nusrat Nahar, Ridwan Bin Rashid, A. K. Chowdhury, Mohammad A. Rashid
Software Mentions: 2
Published: over 8 years ago

10.18632/aging.203098

Revealing the therapeutic targets and molecular mechanisms of emodin-treated coronavirus disease 2019 via a systematic study of network pharmacology
Cited by: 13
Author(s): Haixia Du, Jiaqi Zhu, Jing Chen, Huifen Zhou, Jiehong Yang, Haitong Wan
Software Mentions: 2
Published: about 5 years ago

10.1107/S2052252518017657

Nanobeam precession-assisted 3D electron diffraction reveals a new polymorph of hen egg-white lysozyme
Cited by: 52
Author(s): Arianna Lanza, Eleonora Margheritis, Enrico Mugnaioli, Valentina Cappello, Gianpiero Garau, Mauro Gemmi
Software Mentions: 2
Published: over 7 years ago

10.1186/s12906-015-0588-5

Molecular docking studies of (4Z, 12Z)-cyclopentadeca-4, 12-dienone from Grewia hirsuta with some targets related to type 2 diabetes
Cited by: 36
Author(s): Abirami Natarajan, Shanmugam Shobana, B. Sivakumar, Natarajan Balasubramanyan
Software Mentions: 2
Published: over 11 years ago

10.1107/S2052252519002926

Determination of the molecular basis for coprogen import by Gram-negative bacteria
Cited by: 16
Author(s): Rhys Grinter, Trevor Lithgow
Software Mentions: 2
Published: over 7 years ago

10.1107/S2052252519005372

The structural characterization of a glucosylglycerate hydrolase provides insights into the molecular mechanism of mycobacterial recovery from nitrogen starvation
Cited by: 4
Author(s): T.B. Cereija, Susana Alarico, Eva C. Lourenço, José A. Manso, M. Rita Ventura, Nuno Empadinhas, Sandra Macedo-Ribeiro, Pedro José Barbosa Pereira
Software Mentions: 2
Published: about 7 years ago

10.1107/S2059798319010878

X-ray structure of the direct electron transfer-type FAD glucose dehydrogenase catalytic subunit complexed with a hitchhiker protein
Cited by: 17
Author(s): Hiromi Yoshida, Katsuhiro Kojima, Masaki Shiota, Keiichi Yoshimatsu, Tomohiko Yamazaki, Stefano Ferri, Wakako Tsugawa, Shigehiro Kamitori, Koji Sode
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12862-021-01819-4

Searching for signatures of positive selection in cytochrome b gene associated with subterranean lifestyle in fast-evolving arvicolines (Arvicolinae, Cricetidae, Rodentia)
Cited by: 5
Author(s): Olga Bondareva, Nadezhda A. Potapova, Kirill A. Konovalov, Tatyana V. Petrova, Natalia I. Abramson
Software Mentions: 2
Published: about 5 years ago

10.1107/S2052252515008969

Structural studies of P-type ATPase–ligand complexes using an X-ray free-electron laser
Cited by: 21
Author(s): Maike Bublitz, Karol Nass, N.D. Drachmann, Anders J. Markvardsen, Matthias J. Gutmann, Thomas R. M. Barends, D. Mattle, Robert L. Shoeman, R. Bruce Doak, Sébastien Boutet, Marc Messerschmidt, M. Seibert, Garth J. Williams, L. Foucar, Linda Reinhard, Oleg Sitsel, J.L. Gregersen, Johannes Clausen, Thomas Boesen, Kamil Gotfryd, Kaituo Wang, Claus Olesen, Jesper Møller, Poul Nissen, Ilme Schlichting
Software Mentions: 2
Published: about 11 years ago

10.1107/S205225251900263X

High-viscosity injector-based pink-beam serial crystallography of microcrystals at a synchrotron radiation source
Cited by: 38
Author(s): José M. Martín-García, Liya Zhu, Derek Mendez, Ming-Yue Lee, Eugene Chun, Chufeng Li, Hao Hu, Ganesh Subramanian, David J. Kissick, Craig M. Ogata, Robert H. Henning, Andrii Ishchenko, Zachary Dobson, Shangji Zhang, Uwe Weierstall, John C. H. Spence, Petra Fromme, Nadia A. Zatsepin, Robert F. Fischetti, Vadim Cherezov, Wei Liu
Software Mentions: 2
Published: over 7 years ago

10.3389/fimmu.2021.625808

Structural Basis of VSIG3: The Ligand for VISTA
Cited by: 11
Author(s): Xiaoxue Xie, Caiping Chen, Wenting Chen, Jingwei Jiang, Lanlan Wang, Tingting Li, Hongbin Sun, Jun Li
Software Mentions: 2
Published: over 5 years ago

10.1107/S2052252516008903

Structure of a heterogeneous, glycosylated, lipid-bound,<i>in vivo</i>-grown protein crystal at atomic resolution from the viviparous cockroach<i>Diploptera punctata</i>
Cited by: 24
Author(s): Sanchari Banerjee, Nathan P. Coussens, François-Xavier Gallat, Nitish Sathyanarayanan, Jandhyam Srikanth, Kinji Yagi, James S.S. Gray, Stephen S. Tobe, Barbara Stay, Leonard M. G. Chavas, Ramaswamy Subramanian
Software Mentions: 2
Published: about 10 years ago

10.1107/S2052252517013124

Mix-and-diffuse serial synchrotron crystallography
Cited by: 90
Author(s): Kenneth R. Beyerlein, D. Dierksmeyer, Valerio Mariani, Manuela Kuhn, Iosifina Sarrou, Angelica Ottaviano, Salah Awel, J. Knoška, Silje Skeide Fuglerud, Olof Jönsson, Stephan Stern, Max O. Wiedorn, Oleksandr Yefanov, Luigi Adriano, Richard Bean, Anja Burkhardt, P. Fischer, Michaël Heymann, Daniel A. Horke, Katharina Jungnickel, Elena G. Kovaleva, O. Lorbeer, Markus Metz, Jan Meyer, Andrew J. Morgan, Kanupriya Pande, S. Panneerselvam, Carolin Seuring, A. Tolstikova, J. Lieske, S. Aplin, Manfred Roessle, Thomas A. White, Henry N. Chapman, A. Meents, D. Oberthüer
Software Mentions: 2
Published: almost 9 years ago

10.3389/fimmu.2018.00489

Computational Insight Into the Structural Organization of Full-Length Toll-Like Receptor 4 Dimer in a Model Phospholipid Bilayer
Cited by: 17
Author(s): Mahesh Chandra Patra, Hyuk‐Kwon Kwon, Maria Batool, Sangdun Choi
Software Mentions: 2
Published: over 8 years ago

10.1107/S2052252521003729

Putative hexameric glycosyltransferase functional unit revealed by the crystal structure of <i>Acinetobacter baumannii</i> MurG
Cited by: 1
Author(s): Kyoung Ho Jung, Sunghoon Kwon, Chang Min Kim, Jun Hyuck Lee, Hyun Ho Park
Software Mentions: 2
Published: about 5 years ago

10.3390/md17080479

Characterization of an Alkaline GH49 Dextranase from Marine Bacterium Arthrobacter oxydans KQ11 and Its Application in the Preparation of Isomalto-Oligosaccharide
Cited by: 14
Author(s): Hongfei Liu, Wei Ren, Mingsheng Ly, Haifeng Li, Shujun Wang
Software Mentions: 2
Published: almost 7 years ago

10.1107/S2059798321006513

Exploring ligand dynamics in protein crystal structures with ensemble refinement
Cited by: 3
Author(s): Octav Caldararu, Vilhelm Ekberg, D.T. Logan, Esko Oksanen, Ulf Ryde
Software Mentions: 2
Published: almost 5 years ago

10.3390/md17050295

A New Tyrosinase Inhibitor from the Red Alga Symphyocladia latiuscula (Harvey) Yamada (Rhodomelaceae)
Cited by: 23
Author(s): Pradeep Paudel, Aditi Wagle, Su Hui Seong, Hye Jin Park, Hyun Ah Jung, Jae Sue Choi
Software Mentions: 2
Published: about 7 years ago

10.1107/S2052252520013615

Joint neutron/X-ray crystal structure of a mechanistically relevant complex of perdeuterated urate oxidase and simulations provide insight into the hydration step of catalysis
Cited by: 5
Author(s): Lindsay McGregor, Tamás Földes, Soi Bui, Martine Moulin, Nicolas Coquelle, Matthew P. Blakeley, Edina Rosta, Roberto A. Steiner
Software Mentions: 2
Published: over 5 years ago

10.1016/j.jmb.2013.03.019

Structure of the Tubulin/FtsZ-Like Protein TubZ from Pseudomonas Bacteriophage ΦKZ
Cited by: 30
Author(s): C.H.S. Aylett, Thierry Izoré, Linda Amos, Jan Löwe
Software Mentions: 2
Published: about 13 years ago

10.1016/j.jmb.2013.09.016

Plug-and-Play Pairing via Defined Divalent Streptavidins
Cited by: 86
Author(s): M. Fairhead, Denis Krndija, E.D. Lowe, Mark Howarth
Software Mentions: 2
Published: over 12 years ago

10.1107/S2059798319011938

The flavin mononucleotide cofactor in α-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level
Cited by: 2
Author(s): S.Y. Lyu, Kuan Hung Lin, Hsien‐Wei Yeh, Yi Shan Li, Chun Man Huang, Yung Lin Wang, Hao Wei Shih, N.S. Hsu, Chang Jer Wu, Tsung Lin Li
Software Mentions: 2
Published: almost 7 years ago

10.1107/S2059798315022482

Initiating heavy-atom-based phasing by multi-dimensional molecular replacement
Cited by: 3
Author(s): Bjørn Panyella Pedersen, Pontus Gourdon, Xiangyu Liu, Jesper Lykkegaard Karlsen, Poul Nissen
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0026021

Structural and Biochemical Studies of Human 4-hydroxy-2-oxoglutarate Aldolase: Implications for Hydroxyproline Metabolism in Primary Hyperoxaluria
Cited by: 49
Author(s): Travis J. Riedel, Lynnette C. Johnson, John Knight, Roy R. Hantgan, Ross P. Holmes, W. Todd Lowther
Software Mentions: 2
Published: almost 15 years ago

10.1016/j.jmb.2011.11.007

Structure and Kinetic Stability of the p63 Tetramerization Domain
Cited by: 26
Author(s): Eviatar Natan, A.C. Joerger
Software Mentions: 2
Published: over 14 years ago

10.1016/j.jmb.2013.10.024

Flexible Gates Generate Occluded Intermediates in the Transport Cycle of LacY
Cited by: 63
Author(s): Lukas S. Stelzl, Philip W. Fowler, Mark S. P. Sansom, Oliver Beckstein
Software Mentions: 2
Published: over 12 years ago

10.3389/fimmu.2014.00022

Immunoglobulin and T Cell Receptor Genes: IMGT® and the Birth and Rise of Immunoinformatics
Cited by: 168
Author(s): Marie‐Paule Lefranc
Software Mentions: 2
Published: over 12 years ago

10.1016/j.jmb.2013.05.024

Characterization of 14-3-3-ζ Interactions with Integrin Tails
Cited by: 29
Author(s): Roman Bonet, Ioannis Vakonakis, Iain D. Campbell
Software Mentions: 2
Published: almost 13 years ago

10.3389/fmed.2021.694668

Saudi Familial Hypercholesterolemia Patients With Rare LDLR Stop Gain Variant Showed Variable Clinical Phenotype and Resistance to Multiple Drug Regimen
Cited by: 6
Author(s): Zuhier Awan, Omran M. Rashidi, Bandar Ali Al-Shehri, Kaiser Jamil, Ramu Elango, Jumana Y. Al‐Aama, Robert A. Hegele, Noor Ahmad Shaik
Software Mentions: 2
Published: about 5 years ago

10.3389/fmed.2021.724826

Novel MYO1D Missense Variant Identified Through Whole Exome Sequencing and Computational Biology Analysis Expands the Spectrum of Causal Genes of Laterality Defects
Cited by: 5
Author(s): Rabab Said Alsafwani, Khalidah Khalid Nasser, Thoraia Shinawi, Babajan Banaganapalli, Hanan Abdelhalim ElSokary, Zhaher F. Zaher, Noor Ahmad Shaik, Gaser Abdelmohsen, Jumana Y. Al‐Aama, Adam J. Shapiro, Osman O. Al‐Radi, Turki S Alahmadi
Software Mentions: 2
Published: almost 5 years ago

10.1016/j.jmb.2015.07.014

Structures of the Ultra-High-Affinity Protein–Protein Complexes of Pyocins S2 and AP41 and Their Cognate Immunity Proteins from Pseudomonas aeruginosa
Cited by: 25
Author(s): Amar Joshi, Rhys Grinter, Inokentijs Josts, Sabrina Chen, Justyna Aleksandra Wojdyla, E.D. Lowe, Renata Kaminska, Connor Sharp, Laura C. McCaughey, A.W. Roszak, Richard J. Cogdell, Olwyn Byron, Daniel Walker, Colin Kleanthous
Software Mentions: 2
Published: almost 11 years ago

10.3389/fmicb.2020.00583

The Interaction of RecA With Both CheA and CheW Is Required for Chemotaxis
Cited by: 3
Author(s): Elisabet Frutos-Grilo, María Marsal, Oihane Irazoki, Jordi Barbé, Susana Campoy
Software Mentions: 2
Published: over 6 years ago

10.1107/S2059798318009397

High-pressure protein crystal structure analysis of <i>Escherichia coli</i> dihydrofolate reductase complexed with folate and NADP⁺
Cited by: 16
Author(s): T. Nagae, Hiroyuki Yamada, Nobuhisa Watanabe
Software Mentions: 2
Published: almost 8 years ago

10.1186/1471-2148-8-336

The fate of the duplicated androgen receptor in fishes: a late neofunctionalization event?
Cited by: 77
Author(s): Véronique Douard, Frédéric Brunet, Bastien Boussau, Isabelle Ahrens-Fath, Virginie Vlaeminck-Guillem, Bernard Haendler, Vincent Laudet, Yann Guiguen
Software Mentions: 2
Published: over 17 years ago

10.1016/j.jmb.2010.01.035

Structural Basis of Substrate Binding in WsaF, a Rhamnosyltransferase from Geobacillus stearothermophilus
Cited by: 22
Author(s): Kerstin Steiner, Gregor Hagelueken, Paul Messner, Christina Schäffer, James H. Naismith
Software Mentions: 2
Published: over 16 years ago

10.1007/s13205-014-0216-y

Computational pipeline to identify and characterize functional mutations in ornithine transcarbamylase deficiency
Cited by: 6
Author(s): R. Magesh, C. George Priya Doss
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0076876

Inhibition of Influenza A Virus Infection In Vitro by Peptides Designed In Silico
Cited by: 23
Author(s): Rogelio López-Martínez, G. Lizbeth Ramírez-Salinas, José Correa‐Basurto, Blanca Lilia Barrón
Software Mentions: 2
Published: almost 13 years ago

10.3389/fmicb.2018.01750

Crystal Structures of R-Type Bacteriocin Sheath and Tube Proteins CD1363 and CD1364 From Clostridium difficile in the Pre-assembled State
Cited by: 12
Author(s): Nina Schwemmlein, Jan Pippel, E.M. Gazdag, Wulf Blankenfeldt
Software Mentions: 2
Published: almost 8 years ago

10.1016/j.jmb.2009.10.010

The Central Portion of Factor H (Modules 10–15) Is Compact and Contains a Structurally Deviant CCP Module
Cited by: 50
Author(s): Christoph Q. Schmidt, Andrew P. Herbert, Haydyn D. T. Mertens, Mara Guariento, Dinesh C. Soares, Dušan Uhrı́n, Arthur J. Rowe, Dmitri I. Svergun, Paul N. Barlow
Software Mentions: 2
Published: over 16 years ago

10.3389/fmicb.2018.01466

Insight Into the Interaction Between RNA Polymerase and VPg for Murine Norovirus Replication
Cited by: 10
Author(s): Jihye Lee, Beom Seok Park, Kang Rok Han, Scott B. Biering, Soo J Kim, Jayoung Choi, Jong Hyeon Seok, Intekhab Alam, Mi Sook Chung, Ho M. Kim, Seungmin Hwang, Kyung H. Kim
Software Mentions: 2
Published: about 8 years ago

10.3390/md19040191

Characterization of a New Biofunctional, Exolytic Alginate Lyase from Tamlana sp. s12 with High Catalytic Activity and Cold-Adapted Features
Cited by: 14
Author(s): Rui Yin, Yan-Jun Yi, Zhuo Chen, Baoxun Wang, Xue-Han Li, Yanxia Zhou
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.669220

Interrogating the Role of the Two Distinct Fructose-Bisphosphate Aldolases of Bacillus methanolicus by Site-Directed Mutagenesis of Key Amino Acids and Gene Repression by CRISPR Interference
Cited by: 6
Author(s): Kerstin Schultenkämper, Desirée D. Gütle, Marina Gil López, Laura B. Keller, Lin Zhang, Oliver Einsle, Jean‐Pierre Jacquot, Volker F. Wendisch
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2021.659808

A MexR Mutation Which Confers Aztreonam Resistance to Pseudomonas aeruginosa
Cited by: 9
Author(s): Zhenzhen Ma, Congjuan Xu, Xinxin Zhang, Dan Wang, Xiaolei Pan, Huimin Liu, Guangbo Zhu, Fang Bai, Zhihui Cheng, Weihui Wu, Yongxin Jin
Software Mentions: 2
Published: about 5 years ago

10.1016/j.jmb.2011.03.047

Interaction of the p53 DNA-Binding Domain with Its N-Terminal Extension Modulates the Stability of the p53 Tetramer
Cited by: 79
Author(s): Eviatar Natan, Çetin Baloğlu, Kevin Pagel, Stefan Freund, Nina Morgner, Carol V. Robinson, Alan R. Fersht, A.C. Joerger
Software Mentions: 2
Published: about 15 years ago

10.1016/j.jmb.2009.07.026

Crystal Structures of Wzb of Escherichia coli and CpsB of Streptococcus pneumoniae, Representatives of Two Families of Tyrosine Phosphatases that Regulate Capsule Assembly
Cited by: 69
Author(s): Gregor Hagelueken, Hexian Huang, Iain L. Mainprize, Chris Whitfield, James H. Naismith
Software Mentions: 2
Published: almost 17 years ago

10.1107/S2059798318017047

The crystal structure of the<i>N</i>-acetylglucosamine 2-epimerase from<i>Nostoc</i>sp. KVJ10 reveals the true dimer
Cited by: 5
Author(s): Marie Josée Haglund Halsør, U. Rothweiler, Bjørn Altermark, Inger Lin Uttakleiv Ræder
Software Mentions: 2
Published: over 7 years ago

10.1107/S2059798319009574

Biochemical and structural explorations of α-hydroxyacid oxidases reveal a four-electron oxidative decarboxylation reaction
Cited by: 4
Author(s): Hsien‐Wei Yeh, Kuan Hung Lin, S.Y. Lyu, Yi Shan Li, Chun Man Huang, Yung Lin Wang, Hao Wei Shih, N.S. Hsu, Chang Jer Wu, Tsung Lin Li
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12862-015-0581-0

Analysis of the erythropoietin of a Tibetan Plateau schizothoracine fish (Gymnocypris dobula) reveals enhanced cytoprotection function in hypoxic environments
Cited by: 26
Author(s): Qianghua Xu, Chi Zhang, Dongsheng Zhang, Huapeng Jiang, Syd S. Peng, Yang Liu, Kai Zhao, Congcong Wang, Liangbiao Chen
Software Mentions: 2
Published: over 10 years ago

10.1107/S1399004713033634

Multi-PAS domain-mediated protein oligomerization of PpsR from<i>Rhodobacter sphaeroides</i>
Cited by: 11
Author(s): Udo Heintz, Anton Meinhart, Andreas Winkler
Software Mentions: 2
Published: over 12 years ago

10.1016/j.jmb.2010.03.043

Solution Structure and Characterisation of the Human Pyruvate Dehydrogenase Complex Core Assembly
Cited by: 51
Author(s): Swetha Víjayakríshnan, Sharon M. Kelly, Robert J.C. Gilbert, Philip Callow, David Bhella, V. Trevor Forsyth, J. Gordon Lindsay, Olwyn Byron
Software Mentions: 2
Published: about 16 years ago

10.1107/S1399004715001443

Structure of the N-terminal domain of the protein Expansion: an `Expansion' to the Smad MH2 fold
Cited by: 8
Author(s): Mads Beich-Frandsen, Eric Aragón, Marta Llimargas, J. Benach, Antoni Riéra, Joan Pous, María J. Macias
Software Mentions: 2
Published: over 11 years ago

10.3389/fmicb.2018.03329

Structural and Physiological Exploration of Salmonella Typhi YfdX Uncovers Its Dual Function in Bacterial Antibiotic Stress and Virulence
Cited by: 6
Author(s): Hye Seon Lee, Mi Kyung Lee, Jun‐Seob Kim, Hae-Ran Lee, Hang‐Sik Shin, Moo‐Seung Lee, Kyeong Sik Jin, Cheol-Hee Kim, Bonsu Ku, Choong-Min Ryu, Seung Jun Kim
Software Mentions: 2
Published: over 7 years ago

10.1107/S2059798320016368

Macromolecular crystallography using microcrystal electron diffraction
Cited by: 9
Author(s): Max T. B. Clabbers, Hongyi Xu
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.632095

Integrated Proteomic and Transcriptomic Analyses Reveal the Roles of Brucella Homolog of BAX Inhibitor 1 in Cell Division and Membrane Homeostasis of Brucella suis S2
Cited by: 2
Author(s): Guangdong Zhang, Fangli Zhong, Lei Chen, Peipei Qin, Junmei Li, Feijie Zhi, Lulu Tian, Dong Zhou, Peng Lin, Huatao Chen, Kai-Fu Tang, Wei Liu, Yaping Jin, Aihua Wang
Software Mentions: 2
Published: over 5 years ago

10.1007/s00109-019-01755-3

Molecular modeling of LDLR aids interpretation of genomic variants
Cited by: 8
Author(s): Eric W. Klee, Michael T. Zimmermann
Software Mentions: 2
Published: over 7 years ago

10.1007/s00894-016-2982-4

Improvements in GROMACS plugin for PyMOL including implicit solvent simulations and displaying results of PCA analysis
Cited by: 17
Author(s): Tomasz Makarewicz, Rajmund Kaźmierkiewicz
Software Mentions: 2
Published: about 10 years ago

10.1007/s00894-012-1563-4

Principal component and clustering analysis on molecular dynamics data of the ribosomal L11·23S subdomain
Cited by: 94
Author(s): Antje Wolf, Karl N. Kirschner
Software Mentions: 2
Published: almost 14 years ago

10.1107/S2059798315021683

<i>In meso in situ</i>serial X-ray crystallography of soluble and membrane proteins at cryogenic temperatures
Cited by: 89
Author(s): Chia‐Ying Huang, V. Oliéric, Pikyee Ma, Nicole Howe, Lutz Vogeley, Xiangyu Liu, Rangana Warshamanage, T. Weinert, Ezequiel Panepucci, Brian K. Kobilka, Kay Diederichs, Meitian Wang, Martin Caffrey
Software Mentions: 2
Published: over 10 years ago

10.3389/fmicb.2021.679246

Genetic Characteristics of Human Parainfluenza Virus Types 1–4 From Patients With Clinical Respiratory Tract Infection in China
Cited by: 8
Author(s): Nan Shao, Bo Liu, Yan Xiao, Xinming Wang, Lili Ren, Jie Dong, Lu Sun, Yafang Zhu, Ting Zhang, Fan Yang
Software Mentions: 2
Published: almost 5 years ago

10.1186/1471-2148-13-117

Structural and evolutionary adaptation of rhoptry kinases and pseudokinases, a family of coccidian virulence factors
Cited by: 77
Author(s): Eric Talevich, Natarajan Kannan
Software Mentions: 2
Published: over 13 years ago

10.3389/fmicb.2020.605705

Discovery of an Antibiotic-Related Small Protein of Biocontrol Strain Pseudomonas sp. Os17 by a Genome-Mining Strategy
Cited by: 1
Author(s): Kasumi Takeuchi, Wataru Tsuchiya, Zui Fujimoto, Kosumi Yamada, Nobutaka Someya, Toshimasa Yamazaki
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.46041

Cryo-EM structure of the rhodopsin-Gαi-βγ complex reveals binding of the rhodopsin C-terminal tail to the gβ subunit
Cited by: 50
Author(s): Ching‐Ju Tsai, Jacopo Marino, Ricardo Adaixo, Filip Pamula, J. Muehle, Shoji Maeda, Tilman Flock, Nicholas M. I. Taylor, I. Mohammed, Hugues Matile, Roger Dawson, Xavier Deupí, Henning Stahlberg, Gebhard F. X. Schertler
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.24767

Erythropoietin signaling regulates heme biosynthesis
Cited by: 32
Author(s): Joon Chung, Johannes G. Wittig, Alireza Ghamari, Masako Maeda, Tamara A. Dailey, Hector A. Bergonia, Martin D. Kafina, Emma E. Coughlin, Catherine E. Minogue, Alexander S. Hebert, Liangtao Li, Jerry Kaplan, Harvey F. Lodish, Daniel E. Bauer, Stuart H. Orkin, Alan B. Cantor, Takahiro Maeda, John D. Phillips, Joshua J. Coon, David J. Pagliarini, Harry A. Dailey, Barry H. Paw
Software Mentions: 2
Published: about 9 years ago

10.7554/eLife.61803

A paucigranulocytic asthma host environment promotes the emergence of virulent influenza viral variants
Cited by: 4
Author(s): Katina D. Hulme, Anjana C. Karawita, Cassandra L. Pegg, Myrna J. M. Bunte, Helle Bielefeldt‐Ohmann, Conor J. Bloxham, Silvie Van den Hoecke, Yin Xiang Setoh, Bram Vrancken, Monique I. Spronken, Lauren E. Steele, Nathalie A. J. Verzele, Kyle R. Upton, Alexander A. Khromykh, Keng Yih Chew, Maria B. Sukkar, Simon Phipps, Kirsty R. Short
Software Mentions: 2
Published: over 5 years ago

10.1107/S1399004715018519

Sent packing: protein engineering generates a new crystal form of<i>Pseudomonas aeruginosa</i>DsbA1 with increased catalytic surface accessibility
Cited by: 5
Author(s): Róisín M. McMahon, M. Coincon, Stephanie Tay, Begoña Heras, Craig J. Morton, M.J. Scanlon, Jennifer L. Martin
Software Mentions: 2
Published: over 10 years ago

10.7554/eLife.06547

ULK3 regulates cytokinetic abscission by phosphorylating ESCRT-III proteins
Cited by: 78
Author(s): Anna Caballe, Dawn M Wenzel, Monica Agromayor, Steven L. Alam, Jack J. Skalicky, Magdalena Kloc, Jeremy G. Carlton, Leticia Labrador, Wesley I. Sundquist, Juan Martín-Serrano
Software Mentions: 2
Published: about 11 years ago

10.7554/eLife.61991

A broadly neutralizing macaque monoclonal antibody against the HIV-1 V3-Glycan patch
Cited by: 9
Author(s): Zijun Wang, Christopher O. Barnes, Rajeev Gautam, Julio C. C. Lorenzi, Christian T. Mayer, Thiago Y. Oliveira, Víctor Ramos, Melissa Cipolla, Kristie Gordon, Harry B. Gristick, Anthony P. West, Yoshiaki Nishimura, Henna Raina, Michael S. Seaman, Anna Gazumyan, Malcolm A. Martin, Pamela J. Björkman, Michel C. Nussenzweig, Amelia Escolano
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2015.01380

A Zinc-Dependent Protease AMZ-tk from a Thermophilic Archaeon is a New Member of the Archaemetzincin Protein Family
Cited by: 9
Author(s): Baolei Jia, Zhengqun Li, Jinliang Liu, Ying Sun, Xiaomeng Jia, Yuan Xuan, Jiayan Zhang, Che Ok Jeon
Software Mentions: 2
Published: over 10 years ago

10.7554/eLife.49572

Structure-based characterization of novel TRPV5 inhibitors
Cited by: 36
Author(s): Taylor Hughes, John Smith Del Rosario, Anoop Kapoor, Aysenur Yazici, Yevgen Yudin, Edwin C. Fluck, Marta Filizola, Tibor Rohács, Vera Y. Moiseenkova-Bell
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.38433

Structural relationship between the putative hair cell mechanotransduction channel TMC1 and TMEM16 proteins
Cited by: 80
Author(s): Ángela Ballesteros, Cristina Fenollar–Ferrer, Kenton J. Swartz
Software Mentions: 2
Published: almost 8 years ago

10.1002/anie.201604336

Unveiling (−)‐Englerin A as a Modulator of L‐Type Calcium Channels
Cited by: 37
Author(s): Tiago Rodrigues, Florian Sieglitz, Víctor J. Somovilla, Pedro M. S. D. Cal, Antony Galione, Francisco Corzana, Gonçalo J. L. Bernardes
Software Mentions: 2
Published: about 10 years ago

10.3389/fmicb.2017.00541

Crystal Structure of Glyceraldehyde-3-Phosphate Dehydrogenase from the Gram-Positive Bacterial Pathogen A. vaginae, an Immunoevasive Factor that Interacts with the Human C5a Anaphylatoxin
Cited by: 21
Author(s): Javier Querol-García, Francisco Fernández, Ana V. Marín, Sara Gómez, Daniel Fullà, Cecilia Melchor-Tafur, V. Franco-Hidalgo, Sebastián Albertí, Judith Juanhuix, Santiago Rodrı́guez de Córdoba, José R. Regueiro, M. Cristina Vega
Software Mentions: 2
Published: over 9 years ago

10.7554/eLife.65903

The crystal structure of bromide-bound GtACR1 reveals a pre-activated state in the transmembrane anion tunnel
Cited by: 10
Author(s): Hai Li, Chia‐Ying Huang, Elena G. Govorunova, Oleg A. Sineshchekov, Adrian Yi, Kenneth J. Rothschild, Meitian Wang, Lei Zheng, John L. Spudich
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.56451

Characterization of the kinetic cycle of an ABC transporter by single-molecule and cryo-EM analyses
Cited by: 47
Author(s): Ling Wang, Z.L. Johnson, Mark Wasserman, Jesper Levring, Jue Chen, Shixin Liu
Software Mentions: 2
Published: about 6 years ago

10.1107/S2059798316003065

A generic protocol for protein crystal dehydration using the HC1b humidity controller
Cited by: 14
Author(s): C.M.C. Lobley, James Sandy, Juan Sánchez-Weatherby, Marco Mazzorana, T. Krojer, Radosław P. Nowak, Thomas Sørensen
Software Mentions: 2
Published: about 10 years ago

10.7554/eLife.21600

Crenactin forms actin-like double helical filaments regulated by arcadin-2
Cited by: 31
Author(s): Thierry Izoré, Danguole Kureisaite-Ciziene, Stephen H. McLaughlin, Jan Löwe
Software Mentions: 2
Published: over 9 years ago

10.7554/eLife.02217

Structural basis for the assembly of the mitotic motor Kinesin-5 into bipolar tetramers
Cited by: 62
Author(s): Jonathan M. Scholey, Stanley Nithianantham, Jonathan M. Scholey, Jawdat Al-Bassam
Software Mentions: 2
Published: over 12 years ago

10.3389/fmicb.2018.01925

Characterization of ML-005, a Novel Metaproteomics-Derived Esterase
Cited by: 6
Author(s): Premankur Sukul, Natalie Lupilov, Lars I. Leichert
Software Mentions: 2
Published: almost 8 years ago

10.7554/eLife.41028

Molecular basis of synaptic specificity by immunoglobulin superfamily receptors in Drosophila
Cited by: 31
Author(s): Sibo Cheng, James A. Ashley, J.D. Kurleto, Meike Lobb-Rabe, Yeonhee Jenny Park, Robert A. Carrillo, Engin Özkan
Software Mentions: 2
Published: over 7 years ago

10.1080/19768354.2020.1808529

The immunostimulatory effect of indole-6-carboxaldehyde isolated from <i>Sargassum thunbergii</i> <b>(Mertens) Kuntze</b> in RAW 264.7 macrophages
Cited by: 5
Author(s): Cheol Park, Hyun Hwangbo, Hyesook Lee, Gi‐Young Kim, Hee‐Jae Cha, Sung Hyun Choi, Suhkmann Kim, Heui‐Soo Kim, Seok Joong Yun, Wun-Jae Kim, You‐Jin Jeon, Yung Hyun Choi
Software Mentions: 2
Published: about 6 years ago

10.7554/eLife.32952

SIRT2 deacetylase regulates the activity of GSK3 isoforms independent of inhibitory phosphorylation
Cited by: 36
Author(s): Mohsen Sarikhani, Sneha Mishra, Sangeeta Maity, Chaithanya Kotyada, Donald J. Wolfgeher, Mahesh P. Gupta, Mahavir Singh, Nagalingam R. Sundaresan
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2018.00649

Mechanistic and Structural Insights Into the Unique TetR-Dependent Regulation of a Drug Efflux Pump in Mycobacterium abscessus
Cited by: 24
Author(s): Matthias Richard, Ana Victoria Gutiérrez, Albertus Viljoen, Éric Ghigo, Mickaël Blaise, Laurent Kremer
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.32963

Two distinct DNA sequences recognized by transcription factors represent enthalpy and entropy optima
Cited by: 31
Author(s): Ekaterina Morgunova, Yimeng Yin, Pratyush Kumar Das, Arttu Jolma, Fei Zhu, A. Popov, You Xu, Lennart Nilsson, Jussi Taipale
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2017.02385

Structure–Function Relationship of Aminopeptidase P from Pseudomonas aeruginosa
Cited by: 11
Author(s): Peng Cheng, Li Liu, Changcheng Li, Libang He, Tao Li, Yanjiao Shen, Chao Gao, Ningyu Wang, Yong Xia, Yuanfeng Zhu, Yingjie Song, Qian Lei, Luoting Yu, Rui Bao
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.03604

Structural basis of nucleoside and nucleoside drug selectivity by concentrative nucleoside transporters
Cited by: 49
Author(s): Z.L. Johnson, Jun-Ho Lee, Kiyoun Lee, Minhee Lee, Deok-Ho Kwon, Jiyong Hong, Seok‐Yong Lee
Software Mentions: 2
Published: almost 12 years ago

10.7554/eLife.63524

Molecular structures of the eukaryotic retinal importer ABCA4
Cited by: 28
Author(s): Fangyu Liu, James Lee, Jue Chen
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.36340

Structural basis for potent and broad inhibition of HIV-1 RT by thiophene[3,2-d]pyrimidine non-nucleoside inhibitors
Cited by: 53
Author(s): Yang Yang, Dongwei Kang, Laura A. Nguyen, Z.B. Smithline, Christophe Pannecouque, Peng Zhan, Xinyong Liu, Thomas A. Steitz
Software Mentions: 2
Published: almost 8 years ago

10.7554/eLife.00184

Distinct gating mechanisms revealed by the structures of a multi-ligand gated K+ channel
Cited by: 22
Author(s): Chunguang Kong, Weizhong Zeng, Sheng Ye, Liping Chen, David Sauer, Y. Amy Lam, M.G. Derebe, Youxing Jiang
Software Mentions: 2
Published: over 13 years ago

10.7554/eLife.06792

Acidic pH and divalent cation sensing by PhoQ are dispensable for systemic salmonellae virulence
Cited by: 26
Author(s): Kevin G. Hicks, Scott P. Delbecq, Enea Sancho‐Vaello, Marie-Pierre Blanc, Katja K. Dove, Lynne R. Prost, Margaret E. Daley, Kornelius Zeth, Rachel E. Klevit, Samuel I. Miller
Software Mentions: 2
Published: about 11 years ago

10.1107/S2059798317015236

The crystal structure of the<i>Yersinia pestis</i>iron chaperone YiuA reveals a basic triad binding motif for the chelated metal
Cited by: 5
Author(s): C.D. Radka, Dongquan Chen, Lawrence J. DeLucas, Stephen G. Aller
Software Mentions: 2
Published: over 8 years ago