10.1038/s41598-017-02803-z

Construction of novel repeat proteins with rigid and predictable structures using a shared helix method
Cited by: 22
Author(s): Suk-Jun Youn, Nayoung Kwon, Ji Hyun Lee, Jin Hong Kim, Jin‐Woo Choi, Hayyoung Lee, Jie‐Oh Lee
Software Mentions: 2
Published: about 9 years ago

10.15252/emmm.201404077

Efficient transduction and optogenetic stimulation of retinal bipolar cells by a synthetic adeno‐associated virus capsid and promoter
Cited by: 142
Author(s): Thérèse Cronin, Luk Vandenberghe, Péter Hantz, Josephine Jüttner, Andreas Reimann, Ágota–Enikő Kacsó, Rachel M. Huckfeldt, Volker Busskamp, Hubertus Kohler, Pamela S. Lagali, Botond Roska, Jean Bennett
Software Mentions: 2
Published: almost 12 years ago

10.1038/s41598-017-03220-y

Bacterial protease uses distinct thermodynamic signatures for substrate recognition
Cited by: 13
Author(s): G.A. Bezerra, Yuko Ohara‐Nemoto, Irina Cornaciu, Sofiya Fedosyuk, Guillaume Hoffmann, Adam Round, José Antonio Márquez, Takayuki Nemoto, Kristina Djinović-Carugo
Software Mentions: 2
Published: about 9 years ago

10.1107/S2053230X17001376

Crystal structure of the type IV secretion system component CagX fromHelicobacter pylori
Cited by: 7
Author(s): Jin Zhang, Fan Fei, Yunmeng Zhao, Lifang Sun, Yadan Liu, Ronan Keegan, Michail N. Isupov, Yunkun Wu
Software Mentions: 2
Published: over 9 years ago

10.15252/emmm.201911248

A high‐affinity, bivalent <scp>PDZ</scp> domain inhibitor complexes <scp>PICK</scp> 1 to alleviate neuropathic pain
Cited by: 16
Author(s): Nikolaj Riis Christensen, Marta De Luca, Michael Brett Lever, Mette Richner, Astrid B Hansen, Gith Noes-Holt, Kathrine L. Jensen, Mette Rathje, Dennis Bo Jensen, Simon Erlendsson, Christian R. O. Bartling, Ina Ammendrup-Johnsen, Sofie Pedersen, Michèle Schönauer, Klaus B. Nissen, Søren Roi Midtgaard, Kaare Teilum, Andreas T. Sørensen, Anders Bach, Kristian Strømgaard, Claire Francesca Meehan, Christian Bjerggaard Vægter, Ulrik Gether, Kenneth L. Madsen
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0019510

Insight into the Interaction of Metal Ions with TroA from Streptococcus suis
Cited by: 52
Author(s): Beiwen Zheng, Qiangmin Zhang, Jia Gao, Haitao Han, Ming Li, Jing-Ren Zhang, Jianxun Qi, Jinghua Yan, George F. Gao
Software Mentions: 2
Published: about 15 years ago

10.1371/journal.pone.0151412

Monitoring Solution Structures of Peroxisome Proliferator-Activated Receptor β/δ upon Ligand Binding
Cited by: 13
Author(s): Rico Schwarz, Dirk Tänzler, Christian Ihling, Andrea Sinz
Software Mentions: 2
Published: over 10 years ago

10.1107/S2059798320010505

Crystal structures of human ENPP1 in apo and bound forms
Cited by: 18
Author(s): Matthew L. Dennis, Janet Newman, Olan Dolezal, Meghan Hattarki, Regina Surjadi, Stewart D. Nuttall, Tam Pham, Thomas Nebl, Michelle Camerino, Poh Sim Khoo, Brendon J. Monahan, T.S. Peat
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-017-03664-2

Antibacterial and detoxifying activity of NZ17074 analogues with multi-layers of selective antimicrobial actions against Escherichia coli and Salmonella enteritidis
Cited by: 48
Author(s): Na Yang, Xuehui Liu, Da Teng, Zhanzhan Li, Xiumin Wang, Ruoyu Mao, Xiao Wang, Ya Hao, Jianhua Wang
Software Mentions: 2
Published: about 9 years ago

10.1107/S2053230X15024437

Crystal structure of the flavoenzyme PA4991 fromPseudomonas aeruginosa
Cited by: 0
Author(s): Agata Jacewicz, R. Schnell, Ylva Lindqvist, Günter Schneider
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2105-14-S3-S12

Concomitant prediction of function and fold at the domain level with GO-based profiles
Cited by: 4
Author(s): Daniel López, Florencio Pazos
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0212339

Molecular features of steroid-binding antidins and their use for assaying serum progesterone
Cited by: 2
Author(s): Nitin Agrawal, Soili I. Lehtonen, Meri Uusi-Mäkelä, Purvi Jain, Sari Viitala, Juha Määttä, Niklas Kähkönen, Latifeh Azizi, Tiina A. Riihimäki, Markku S. Kulomaa, Mark S. Johnson, Vesa P. Hytönen, Tomi T. Airenne
Software Mentions: 2
Published: over 7 years ago

10.15252/embr.201540436

Structure and function of the N‐terminal domain of the human mitochondrial calcium uniporter
Cited by: 80
Author(s): Youngjin Lee, Choon Kee Min, Tae Kyun Kim, Heesang Song, Young‐Hun Lim, Dong-Wook Kim, Kyung Shik Shin, Minji Kang, Jung Youn Kang, Hyung‐Seop Youn, Jung‐Gyu Lee, Jin Yong An, Kyoung Ryoung Park, Jia Jia Lim, Ji Hun Kim, Zee Yong Park, Yeon‐Soo Kim, Jimin Wang, Do Han Kim, Soo Hyun Eom
Software Mentions: 2
Published: almost 11 years ago

10.1186/1471-2105-15-56

iview: an interactive WebGL visualizer for protein-ligand complex
Cited by: 54
Author(s): Hongjian Li, Kwong‐Sak Leung, Takanori Nakane, Man Hon Wong
Software Mentions: 2
Published: over 12 years ago

10.15252/embr.202052325

NeutrobodyPlex—monitoring SARS‐CoV‐2 neutralizing immune responses using nanobodies
Cited by: 35
Author(s): Teresa R. Wagner, E. Ostertag, Philipp Kaiser, Marius Gramlich, Natalia Ruétalo, Daniel Junker, Julia Haering, Bjoern Traenkle, Matthias Becker, Alex Dulovic, H Schweizer, Stefan Nueske, Armin M. Scholz, Anne Zeck, Katja Schenke‐Layland, Annika Nelde, Monika Strengert, Juliane S. Walz, Georg Zocher, Thilo Stehle, Michael Schindler, Nicole Schneiderhan‐Marra, Ulrich Rothbauer
Software Mentions: 2
Published: about 5 years ago

10.15252/embr.201745680

Active site alanine mutations convert deubiquitinases into high‐affinity ubiquitin‐binding proteins
Cited by: 40
Author(s): Marie E. Morrow, Michael T. Morgan, Marcello Clerici, Kateřina Growková, Ming Yan, David Komander, Titia K. Sixma, Michal Šimíček, Cynthia Wolberger
Software Mentions: 2
Published: almost 8 years ago

10.15252/embr.201847183

Structural basis of <scp>HEAT</scp> ‐kleisin interactions in the human condensin I subcomplex
Cited by: 18
Author(s): Kodai Hara, Kazuhisa Kinoshita, Tomoko Migita, Kei Murakami, Kenichiro Shimizu, K. Takeuchi, Takeshi Hirano, Hiroshi Hashimoto
Software Mentions: 2
Published: over 7 years ago

10.1107/S2053230X15001351

Improved crystallization and diffraction of caffeine-induced death suppressor protein 1 (Cid1)
Cited by: 1
Author(s): Luke A. Yates, Benjamin P. Durrant, M. Barber, K. Harlos, Sophie Fleurdépine, Chris J. Norbury, Robert J.C. Gilbert
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-017-05234-y

Structural and Biochemical Characterization of Apicomplexan Inorganic Pyrophosphatases
Cited by: 2
Author(s): Abhishek Jamwal, Manickam Yogavel, M. Z. Abdin, Swatantra Kumar Jain, Amit Sharma
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-05509-4

Structure of polyhydroxyalkanoate (PHA) synthase PhaC from Chromobacterium sp. USM2, producing biodegradable plastics
Cited by: 69
Author(s): Min Fey Chek, Sunyong Kim, Tomoyuki Mori, Hasni Arsad, Mohammed Razip Samian, Kumar Sudesh, Toshio Hakoshima
Software Mentions: 2
Published: almost 9 years ago

10.15252/embr.201847182

Multiple C2 domains and transmembrane region proteins ( <scp>MCTP</scp> s) tether membranes at plasmodesmata
Cited by: 78
Author(s): Marie Brault, J.P. Petit, Françoise Immel, William J Nicolas, Marie Glavier, Lysiane Brocard, Amèlia Gaston, Mathieu Fouché, Timothy J. Hawkins, Jean-Marc Crowet, Magali Grison, V. Germain, Marion Rocher, Max Kraner, Vikram Alva, Stéphane Claverol, Andrea Paterlini, Yrjö Helariutta, Magali Deleu, Laurence Lins, Jens Tilsner, Emmanuelle Bayer
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-017-05657-7

Plasticity in the Oxidative Folding Pathway of the High Affinity Nerita Versicolor Carboxypeptidase Inhibitor (NvCI)
Cited by: 4
Author(s): Sebastián Esperante, Giovanni Covaleda, Sebastián A. Trejo, Sílvia Bronsoms, Francesc X. Aviles, Salvador Ventura
Software Mentions: 2
Published: almost 9 years ago

10.1107/S2059798321000826

<i>Vagabond</i>: bond-based parametrization reduces overfitting for refinement of proteins
Cited by: 8
Author(s): H. Ginn
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-05627-z

X-ray crystallographic structure of a bacterial polysialyltransferase provides insight into the biosynthesis of capsular polysialic acid
Cited by: 12
Author(s): Christian Lizak, L.J. Worrall, Lars Baumann, Moritz M. Pfleiderer, Gesa Volkers, Tianjun Sun, Lyann Sim, Warren W. Wakarchuk, Stephen G. Withers, N.C.J. Strynadka
Software Mentions: 2
Published: almost 9 years ago

10.1107/S2059798316007907

Structural basis for acyl-group discrimination by human Gcn5L2
Cited by: 44
Author(s): Alison E. Ringel, Cynthia Wolberger
Software Mentions: 2
Published: about 10 years ago

10.1002/ece3.7582

The complete mitogenome of <i>Phymorhynchus</i> sp. (Neogastropoda, Conoidea, Raphitomidae) provides insights into the deep‐sea adaptive evolution of Conoidea
Cited by: 7
Author(s): Mei Yang, Dong Dong, Xinzheng Li
Software Mentions: 2
Published: about 5 years ago

10.1002/ece3.52

Regulatory versus coding signatures of natural selection in a candidate gene involved in the adaptive divergence of whitefish species pairs ( Coregonus spp.)
Cited by: 15
Author(s): Julie Jeukens, Louis Bernatchez
Software Mentions: 2
Published: over 14 years ago

10.1038/s41598-017-05268-2

Structural and Functional Analysis of Latex Clearing Protein (Lcp) Provides Insight into the Enzymatic Cleavage of Rubber
Cited by: 25
Author(s): Lorena Ilcu, Wolf Röther, Jakob Birke, Anton Brausemann, Oliver Einsle, Dieter Jendrossek
Software Mentions: 2
Published: almost 9 years ago

10.1080/22221751.2020.1781551

Virus strain from a mild COVID-19 patient in Hangzhou represents a new trend in SARS-CoV-2 evolution potentially related to Furin cleavage site
Cited by: 40
Author(s): Xi Jin, Kangli Xu, Penglei Jiang, Jiangshan Lian, Shaorui Hao, Hang‐Ping Yao, Hongyu Jia, Yimin Zhang, Lin Zheng, Nuoheng zheng, Dong Chen, Jinmei Yao, Jianhua Hu, Gao J, Liang Wen, Jian Shen, Yue Ren, Guodong Yu, Xiaoyan Wang, Yingfeng Lu, Xiaopeng Yu, Liang Yu, Da‐Xiong Xiang, Nanping Wu, Xiangyun Lu, Linfang Cheng, Fumin Liu, Haibo Wu, Changzhong Jin, Xiaofeng Yang, Pengxu Qian, Yunqing Qiu, Jifang Sheng, Tingbo Liang, Lanjuan Li, Yida Yang
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-017-06612-2

Evaluation of Sofosbuvir (β-D-2′-deoxy-2′-α-fluoro-2′-β-C-methyluridine) as an inhibitor of Dengue virus replication #
Cited by: 51
Author(s): Hongtao Xu, Susan P. Colby-Germinario, Said Hassounah, Clare Fogarty, Nathan Osman, Navaneethan Palanisamy, Ying-Shan Han, Maureen Oliveira, Yudong Quan, Mark A. Wainberg
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-06023-3

Search for non-lactam inhibitors of mtb β-lactamase led to its open shape in apo state: new concept for antibiotic design
Cited by: 10
Author(s): Amin Sagar, Nazia Haleem, Yaawar Mir Bashir, . Ashish
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-05594-5

Escape from humoral immunity is associated with treatment failure in HIV-1-infected patients receiving long-term antiretroviral therapy
Cited by: 6
Author(s): Yabo Ouyang, Qianqian Yin, Wei Li, Zhenpeng Li, Desheng Kong, Yanling Wu, Kui Hong, Hui Xing, Yiming Shao, Shibo Jiang, Tianlei Ying, Liying Ma
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-06278-w

Mechanisms and Specificity of Phenazine Biosynthesis Protein PhzF
Cited by: 11
Author(s): Christina Diederich, Mario Leypold, Martin Culka, Hansjörg Weber, Rolf Breinbauer, G. Matthias Ullmann, Wulf Blankenfeldt
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-06578-1

Structure of Chorismate Mutase-like Domain of DAHPS from Bacillus subtilis Complexed with Novel Inhibitor Reveals Conformational Plasticity of Active Site
Cited by: 11
Author(s): Shivendra Pratap, Aditya Dev, Vijay Kumar, Ravi Yadav, M. Narwal, Shailly Tomar, Pravindra Kumar
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-01705-4

Structural analysis of the regulatory mechanism of MarR protein Rv2887 in M. tuberculosis
Cited by: 16
Author(s): Yunrong Gao, Defeng Li, Joy Fleming, Ya‐Feng Zhou, Ying Liu, Jiao-Yu Deng, Lin Zhou, Jie Zhou, Guofeng Zhu, Xian-En Zhang, Dacheng Wang, Lijun Bi
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-06575-4

Predicting the functional consequences of non-synonymous single nucleotide polymorphisms in IL8 gene
Cited by: 70
Author(s): Tikam Chand Dakal, Deepak Kala, Gourav Dhiman, Vinod Kumar Yadav, A. Krokhotin, Nikolay V. Dokholyan
Software Mentions: 2
Published: almost 9 years ago

10.1080/22221751.2020.1865840

Structure of the multiple functional domains from coronavirus nonstructural protein 3
Cited by: 8
Author(s): Mengxia Li, Gang Ye, Yu Si, Zhou Shen, Zhu Liu, Yuejun Shi, Shaobo Xiao, Zhen F. Fu, Guiqing Peng
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-06446-y

A novel proton transfer mechanism in the SLC11 family of divalent metal ion transporters
Cited by: 27
Author(s): Jonai Pujol‐Giménez, Matthias A. Hediger, Gergely Gyimesi
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-07436-w

Aspergillus Secondary Metabolite Database, a resource to understand the Secondary metabolome of Aspergillus genus
Cited by: 57
Author(s): Varahalarao Vadlapudi, Nabajyoti Borah, Kanaka Raju Yellusani, Sriramya Gade, P. Sunder Ram Reddy, Maheshwari Rajamanikyam, Lakshmi Vempati, Satya Prakash Gubbala, Pankaj Chopra, Suryanarayana Murty Upadhyayula, Ramars Amanchy
Software Mentions: 2
Published: almost 9 years ago

10.1186/s13068-019-1449-0

An actinobacteria lytic polysaccharide monooxygenase acts on both cellulose and xylan to boost biomass saccharification
Cited by: 30
Author(s): Thamy Lívia Ribeiro Corrêa, Atílio Tomazini Júnior, L. D. Wolf, Marcos Silveira Buckeridge, Leandro Vieira dos Santos, Mário Tyago Murakami
Software Mentions: 2
Published: about 7 years ago

10.1107/S205979832001253X

Structure of a GH51 α-<scp>L</scp>-arabinofuranosidase from <i>Meripilus giganteus</i>: conserved substrate recognition from bacteria to fungi
Cited by: 7
Author(s): N.G.S. McGregor, J.P. Turkenburg, Kristian B. R. M. Krogh, Jens Erik Nielsen, Marta Artola, Keith A. Stubbs, Herman S. Overkleeft, G.J. Davies
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2105-15-75

Structure and computational analysis of a novel protein with metallopeptidase-like and circularly permuted winged-helix-turn-helix domains reveals a possible role in modified polysaccharide biosynthesis
Cited by: 1
Author(s): Debanu Das, Alexey G. Murzin, Neil D. Rawlings, Alex Bateman, Penelope Coggill, Alex Bateman, Adam Godzik, L. Aravind
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0081904

New Conformational State of NHERF1-CXCR2 Signaling Complex Captured by Crystal Lattice Trapping
Cited by: 10
Author(s): Yuanyuan Jiang, Guorong Lu, Laura Trescott, Yuning Hou, Xiaoqing Guan, Shuo Wang, Angelique Stamenkovich, J.S. Brunzelle, Nualpun Sirinupong, Chunying Li, Zhe Yang
Software Mentions: 2
Published: over 12 years ago

10.1080/22221751.2019.1707716

Structural characterization of glycinamide-RNase-transformylase T from <i>Mycobacterium tuberculosis</i>
Cited by: 1
Author(s): Chuanbo Cong, Zuliang Liu, Liguo Liu, Jianmin Wang, Qi Jin
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-017-08303-4

Structural characterization of CAS SH3 domain selectivity and regulation reveals new CAS interaction partners
Cited by: 12
Author(s): Jakub Gemperle, R. Hexnerova, Martin Lepšı́k, Petr Těšina, Michal Dibus, Marián Novotný, Jan Brábek, Václav Veverka, Daniel Rösel
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-08834-w

Structural analysis of Wss1 protein from saccharomyces cerevisiae
Cited by: 9
Author(s): Xiaoyun Yang, Yanhua Li, Zengqiang Gao, Zongqiang Li, Jianhua Xu, Wenjia Wang, Yuhui Dong
Software Mentions: 2
Published: almost 9 years ago

10.1080/22221751.2021.1899770

The preclinical inhibitor GS441524 in combination with GC376 efficaciously inhibited the proliferation of SARS-CoV-2 in the mouse respiratory tract
Cited by: 33
Author(s): Yuejun Shi, Lei Shuai, Zhiyuan Wen, Chong Wang, Yuanyuan Yan, Zhe Jiao, Fenglin Guo, Zhen F. Fu, Huanchun Chen, Zhigao Bu, Guiqing Peng
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2105-7-14

Local protein structure prediction using discriminative models
Cited by: 64
Author(s): Oliver Sander, Iris E. Sommer, Thomas Lengauer
Software Mentions: 2
Published: over 20 years ago

10.1038/s41598-017-08742-z

Identification and Characterization of a Bacterial Homolog of Chloride Intracellular Channel (CLIC) Protein
Cited by: 18
Author(s): Shubha Gururaja Rao, Devasena Ponnalagu, Sowmya Sukur, Harkewal Singh, Shridhar Sanghvi, Yixiao Mei, Ding Jun Jin, Harpreet Singh
Software Mentions: 2
Published: almost 9 years ago

10.1107/S2053230X15008584

Structure of human saposin A at lysosomal pH
Cited by: 11
Author(s): C.P. Hill, Randy J. Read, Janet E. Deane
Software Mentions: 2
Published: about 11 years ago

10.1186/s13068-018-1321-7

Cellulose-specific Type B carbohydrate binding modules: understanding oligomeric and non-crystalline substrate recognition mechanisms
Cited by: 4
Author(s): Abhishek A. Kognole, Christina M. Payne
Software Mentions: 2
Published: over 7 years ago

10.1107/S0907444912051670

Structural studies of<i>Pseudomonas</i>and<i>Chromobacterium</i>ω-aminotransferases provide insights into their differing substrate specificity
Cited by: 50
Author(s): C. Sayer, Michail N. Isupov, Aaron Westlake, Jennifer A. Littlechild
Software Mentions: 2
Published: over 13 years ago

10.1186/1471-2105-13-S4-S2

PyMod: sequence similarity searches, multiple sequence-structure alignments, and homology modeling within PyMOL
Cited by: 130
Author(s): Emanuele Bramucci, Alessandro Paiardini, Francesco Bossa, Stefano Pascarella
Software Mentions: 2
Published: over 14 years ago

10.1186/1754-6834-7-2

Ligninolytic peroxidase genes in the oyster mushroom genome: heterologous expression, molecular structure, catalytic and stability properties, and lignin-degrading ability
Cited by: 99
Author(s): Elena Fernández‐Fueyo, Francisco J. Ruíz-Dueñas, Marı́a Jesús Martı́nez, Antonio Romero, Kenneth E. Hammel, Francisco J. Medrano, Ángel T. Martı́nez
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0251459

Crystal and solution structures reveal oligomerization of individual capsid homology domains of Drosophila Arc
Cited by: 5
Author(s): Erik I. Hallin, Sigurbjörn Markússon, Lev Böttger, Andrew E. Torda, Clive R. Bramham, Petri Kursula
Software Mentions: 2
Published: about 5 years ago

10.1186/s13068-017-1006-7

Correlation of structure, function and protein dynamics in GH7 cellobiohydrolases from Trichoderma atroviride, T. reesei and T. harzianum
Cited by: 23
Author(s): Anna S. Borisova, Elena V. Eneyskaya, Suvamay Jana, Silke Flindt Badino, Jeppe Kari, Antonella Amore, Magnus Karlsson, Henrik Hansson, Mats Sandgren, Michael E. Himmel, Peter Westh, Christina M. Payne, Anna A. Kulminskaya, Jerry Ståhlberg
Software Mentions: 2
Published: over 8 years ago

10.1107/S2053230X1501657X

High-resolution structures of<i>Lactobacillus salivarius</i>transketolase in the presence and absence of thiamine pyrophosphate
Cited by: 1
Author(s): P. Lukacik, C.M.C. Lobley, Mario Bumann, Victoria Arena De Souza, Raymond J. Owens, Paul W. O’Toole, Martin A. Walsh
Software Mentions: 2
Published: almost 11 years ago

10.1038/s41598-018-28584-7

Structural and functional characterization of suramin-bound MjTX-I from Bothrops moojeni suggests a particular myotoxic mechanism
Cited by: 24
Author(s): Daniela P. Marchi-Salvador, Thiago R. Dreyer, Antoniel Augusto Severo Gomes, Walter Luís Garrido Cavalcante, Jorge M. Santos, César A. Gandin, Mário de Oliveira Neto, Márcia Gallacci, Marcos R.M. Fontes
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0004656

Unusual Armadillo Fold in the Human General Vesicular Transport Factor p115
Cited by: 25
Author(s): Harald Striegl, Yvette Roske, Daniel Kümmel, Udo Heinemann
Software Mentions: 2
Published: over 17 years ago

10.1038/s41598-018-28692-4

Structural analyses of FERM domain-mediated membrane localization of FARP1
Cited by: 11
Author(s): Yi Chun Kuo, Xiaojing He, Andrew J. Coleman, Yu‐Ju Chen, Pranathi Dasari, Thomas Biederer, Xuewu Zhang
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0080298

Diversification of Fungal Specific Class A Glutathione Transferases in Saprotrophic Fungi
Cited by: 37
Author(s): Yann Mathieu, P. Prosper, F. Favier, Luc Harvengt, Claude Didierjean, Jean‐Pierre Jacquot, Mélanie Morel‐Rouhier, Éric Gelhaye
Software Mentions: 2
Published: over 12 years ago

10.1038/s41598-018-29064-8

Structural dynamics of calmodulin-ryanodine receptor interactions: electron paramagnetic resonance using stereospecific spin labels
Cited by: 12
Author(s): Cheng Her, Andrew R. Thompson, Christine B. Karim, David D. Thomas
Software Mentions: 2
Published: almost 8 years ago

10.1289/ehp.1306902

Mimicking of Estradiol Binding by Flame Retardants and Their Metabolites: A Crystallographic Analysis
Cited by: 79
Author(s): R.A. Gosavi, Gabriel A. Knudsen, Linda S. Birnbaum, Lars C. Pedersen
Software Mentions: 2
Published: almost 13 years ago

10.1111/1462-2920.13036

Closing the gaps on the viral photosystem‐ <scp>I</scp> <i> psa <scp>DCAB</scp> </i> gene organization
Cited by: 7
Author(s): Sheila Roitman, José Flores‐Uribe, Alon Philosof, Ben Knowles, Forest Rohwer, J. Cesar Ignacio‐Espinoza, Matthew B. Sullivan, Francisco M. Cornejo‐Castillo, Pablo Sánchez, Silvia G. Acinas, Chris L. Dupont, Oded Béjà
Software Mentions: 2
Published: over 10 years ago

10.1107/S2053230X14003793

1.55 Å resolution X-ray crystal structure of Rv3902c fromMycobacterium tuberculosis
Cited by: 1
Author(s): Bharat Reddy, Derek Moates, Heung-Bok Kim, Todd Green, Chang-Yub Kim, Thomas C. Terwilliger, Lawrence J. DeLucas
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0181551

Solution NMR structure of the TRIM21 B-box2 and identification of residues involved in its interaction with the RING domain
Cited by: 8
Author(s): Amélie Wallenhammar, Madhanagopal Anandapadamanaban, Alexander Lemak, Claudio Mirabello, Patrik Lundström, Björn Wallner, Maria Sunnerhagen
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-018-29498-0

Identification, Characterization, and X-ray Crystallographic Analysis of a Novel Type of Lectin AJLec from the Sea Anemone Anthopleura japonica
Cited by: 8
Author(s): Hajime Unno, Azusa Nakamura, Shigeo Mori, Shuichiro Goda, Kensei Yamaguchi, Keiko Hiemori, Hiroaki Tateno, Tomomitsu Hatakeyama
Software Mentions: 2
Published: almost 8 years ago

10.1107/S0907444913002023

The structures of<i>Arabidopsis</i>Deg5 and Deg8 reveal new insights into HtrA proteases
Cited by: 13
Author(s): Wei Sun, Feng Gao, H. Fan, Xiaoyue Shan, Renhua Sun, Lin Liu, Weimin Gong
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0098634

Insights into Alpha-Hemolysin (Hla) Evolution and Expression among Staphylococcus aureus Clones with Hospital and Community Origin
Cited by: 31
Author(s): Ana Tavares, Julius Nielsen, Kasper Boye, Susanne Mie Rohde, Ana Cristina Paulo, Henrik Westh, Kristian Schønning, Hermı́nia de Lencastre, Maria Miragaia
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0242383

The crystal structure of mouse IRG1 suggests that cis-aconitate decarboxylase has an open and closed conformation
Cited by: 4
Author(s): Hye Lin Chun, So Yeon Lee, Ki-Hwa Kim, Chang Sup Lee, Tae‐Jin Oh, Hyun Ho Park
Software Mentions: 2
Published: over 5 years ago

10.1038/s41431-020-00728-2

NAA10 p.(N101K) disrupts N-terminal acetyltransferase complex NatA and is associated with developmental delay and hemihypertrophy
Cited by: 6
Author(s): Nina McTiernan, Harinder Gill, Carlos E. Prada, Harry Pachajoa, Juliana Lores, Causes Study, Thomas Arnesen
Software Mentions: 2
Published: almost 6 years ago

10.1186/1471-2105-13-55

CLIPS-1D: analysis of multiple sequence alignments to deduce for residue-positions a role in catalysis, ligand-binding, or protein structure
Cited by: 13
Author(s): Jan-Oliver Janda, Markus Busch, Fabian Kück, Mikhail Porfenenko, Rainer Merkl
Software Mentions: 2
Published: over 14 years ago

10.1107/S0907444913011323

Structure of the cobalamin-binding protein of a putative<i>O</i>-demethylase from<i>Desulfitobacterium hafniense</i>DCB-2
Cited by: 6
Author(s): Hanno Sjuts, Mark S. Dunstan, Karl Fisher, D. Leys
Software Mentions: 2
Published: almost 13 years ago

10.1016/j.ejmech.2018.04.035

Aminobenzothiazole derivatives stabilize the thermolabile p53 cancer mutant Y220C and show anticancer activity in p53-Y220C cell lines
Cited by: 52
Author(s): Matthias G. J. Baud, Matthias R. Bauer, Lorena Verduci, Felix A. Dingler, Ketan Patel, Debmalya Roy, A.C. Joerger, Alan R. Fersht
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-31808-5

Copper mediated amyloid-β binding to Transthyretin
Cited by: 24
Author(s): Lidia Ciccone, Carole Fruchart-Gaillard, Gilles Mourier, Martin Savko, Susanna Nencetti, Elisabetta Orlandini, Denis Servent, E.A. Stura, William Shepard
Software Mentions: 2
Published: almost 8 years ago

10.1107/S1399004715016429

Structure of AadA from<i>Salmonella enterica</i>: a monomeric aminoglycoside (3′′)(9) adenyltransferase
Cited by: 14
Author(s): Yang Chen, Joakim Näsvall, Shiying Wu, Dan I. Andersson, M. Selmer
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-018-32217-4

Genetic analysis of ATP13A2, PLA2G6 and FBXO7 in a cohort of Chinese patients with early-onset Parkinson’s disease
Cited by: 10
Author(s): Ting Shen, Jiali Pu, Hsin-Yi Lai, Lingjia Xu, Xiaoli Su, Yaping Yan, Yasi Jiang, Baorong Zhang
Software Mentions: 2
Published: almost 8 years ago

10.1155/2020/3219840

Screening for a Potential Therapeutic Agent from the Herbal Formula in the 4th Edition of the Chinese National Guidelines for the Initial-Stage Management of COVID-19 via Molecular Docking
Cited by: 13
Author(s): Yue Sun, Angela Wei Hong Yang, Andrew Hung, George Binh Lenon
Software Mentions: 2
Published: over 5 years ago

10.1107/S0907444913027534

Extending molecular-replacement solutions with<i>SHELXE</i>
Cited by: 80
Author(s): Andrea Thorn, George M. Sheldrick
Software Mentions: 2
Published: over 12 years ago

10.1186/1471-2105-9-109

Evolutionary Pareto-optimization of stably folding peptides
Cited by: 24
Author(s): Wolfram Gronwald, Tim Hohm, Daniel Hoffmann
Software Mentions: 2
Published: over 18 years ago

10.1038/s41598-018-32815-2

Allosteric Role of Substrate Occupancy Toward the Alignment of P-glycoprotein Nucleotide Binding Domains
Cited by: 13
Author(s): Lurong Pan, Stephen G. Aller
Software Mentions: 2
Published: almost 8 years ago

10.1155/2020/2396569

Systematically Exploring the Antitumor Mechanisms of Core Chinese Herbs on Hepatocellular Carcinoma: A Computational Study
Cited by: 4
Author(s): Zhulin Wu, Li He, Lianan Wang, Lisheng Peng
Software Mentions: 2
Published: almost 6 years ago

10.1155/2020/4863015

Uncovering the Mechanism of the Effects of <i>Pien-Tze-Huang</i> on Liver Cancer Using Network Pharmacology and Molecular Docking
Cited by: 5
Author(s): Shanghui Liu, Run Wang, Yan Lou, Jia Liu
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-018-33366-2

Increasing the distance between two monomers of topoisomerase IIβ under the action of antitumor agent 4β-sulfur-(benzimidazole) 4′-demethylepipodophyllotoxin
Cited by: 2
Author(s): Lin-Yang Sun, Liwen Zhu, Ya‐Jie Tang
Software Mentions: 2
Published: almost 8 years ago

10.1186/1471-2105-13-334

Protein interface classification by evolutionary analysis
Cited by: 126
Author(s): José M. Duarte, Adam Srebniak, Martin A. Schärer, Guido Capitani
Software Mentions: 2
Published: over 13 years ago

10.1038/s41598-018-33227-y

Endocrine therapy-resistant breast cancer model cells are inhibited by soybean glyceollin I through Eleanor non-coding RNA
Cited by: 19
Author(s): Takaya Yamamoto, Chiyomi Sakamoto, Hiroaki Tachiwana, Mitsuru Kumabe, Toshiro Matsui, Tadatoshi Yamashita, Masatoshi Shinagawa, Koji Ochiai, Noriko Saitoh, Mitsuyoshi Nakao
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2105-13-153

Molecular evolution of dihydrouridine synthases
Cited by: 28
Author(s): J. Kasprzak, Anna Czerwoniec, Janusz M. Bujnicki
Software Mentions: 2
Published: about 14 years ago

10.1186/1471-2105-12-313

Comprehensive, atomic-level characterization of structurally characterized protein-protein interactions: the PICCOLO database
Cited by: 56
Author(s): G. Richard J. Bickerton, Alícia P. Higueruelo, Tom L. Blundell
Software Mentions: 2
Published: almost 15 years ago

10.1186/s12859-014-0434-7

Structure and sequence analyses of Bacteroides proteins BVU_4064 and BF1687 reveal presence of two novel predominantly-beta domains, predicted to be involved in lipid and cell surface interactions
Cited by: 3
Author(s): Padmaja Natarajan, Marco Punta, Abhinav Kumar, Andrew Yeh, Adam Godzik, L. Aravind
Software Mentions: 2
Published: over 11 years ago

10.1155/2013/487158

Metabonomics Combined with UPLC-MS Chemical Profile for Discovery of Antidepressant Ingredients of a Traditional Chinese Medicines Formula, Chaihu-Shu-Gan-San
Cited by: 10
Author(s): Hongmei Jia, Zhiheng Su, Wei Long, Yuetao Liu, Xing Chang, Hongwu Zhang, Gang Ding, Yun Feng, Duan Cai, Zhong‐Mei Zou
Software Mentions: 2
Published: over 13 years ago

10.1186/s12859-016-1209-0

Protein secondary structure prediction using a small training set (compact model) combined with a Complex-valued neural network approach
Cited by: 29
Author(s): Shamima Rashid, Saras Saraswathi, Andrzej Kloczkowski, Suresh Sundaram, Andrzej Koliński
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0026021

Structural and Biochemical Studies of Human 4-hydroxy-2-oxoglutarate Aldolase: Implications for Hydroxyproline Metabolism in Primary Hyperoxaluria
Cited by: 49
Author(s): Travis J. Riedel, Lynnette C. Johnson, John Knight, Roy R. Hantgan, Ross P. Holmes, W. Todd Lowther
Software Mentions: 2
Published: almost 15 years ago

10.1038/s41598-018-35559-1

A biophysical study on the mechanism of interactions of DOX or PTX with α-lactalbumin as a delivery carrier
Cited by: 17
Author(s): Behdad Delavari, Fatemeh Mamashli, Bahareh Bigdeli, Atefeh Poursoleiman, Leila Karami, Zahra Zolmajd-Haghighi, Ali Ghasemi, Samaneh Samaei-Daryan, Morteza Hosseini, Thomas Haertlé, Vladimir I. Muronetz, Øyvind Halskau, Ali Akbar Moosavi-Movahedi, Bahram Goliaei, Ali Hossein Rezayan, Ali Akbar Saboury
Software Mentions: 2
Published: over 7 years ago

10.1107/S1744309111016551

Structures of the rat complement regulator CrrY
Cited by: 4
Author(s): Pietro Roversi, Steven Johnson, Joseph Caesar, Florence McLean, K.J. Leath, Stefanos A. Tsiftsoglou, B. Paul Morgan, Claire L. Harris, Robert B. Sim, Susan M. Lea
Software Mentions: 2
Published: about 15 years ago

10.1038/s41598-018-35590-2

Reconstructing the evolutionary history of F420-dependent dehydrogenases
Cited by: 17
Author(s): María Laura Mascotti, Hemant Kumar, Quốc Thái Nguyễn, Maximiliano Juri Ayub, Marco W. Fraaije
Software Mentions: 2
Published: over 7 years ago

10.1107/S1744309113012748

Further structural insights into the binding of complement factor H by complement regulator-acquiring surface protein 1 (CspA) of<i>Borrelia burgdorferi</i>
Cited by: 13
Author(s): Joseph Caesar, Reinhard Wallich, Peter Kraiczy, Peter F. Zipfel, Susan M. Lea
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0076876

Inhibition of Influenza A Virus Infection In Vitro by Peptides Designed In Silico
Cited by: 23
Author(s): Rogelio López-Martínez, G. Lizbeth Ramírez-Salinas, José Correa‐Basurto, Blanca Lilia Barrón
Software Mentions: 2
Published: over 12 years ago

10.1186/s13068-019-1457-0

The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases
Cited by: 77
Author(s): Leander Sützl, Gabriel Foley, Elizabeth M. J. Gillam, Mikael Bodén, Dietmar Haltrich
Software Mentions: 2
Published: about 7 years ago

10.1186/s12859-016-0918-8

Design, structure prediction and molecular dynamics simulation of a fusion construct containing malaria pre-erythrocytic vaccine candidate, PfCelTOS, and human interleukin 2 as adjuvant
Cited by: 21
Author(s): Shabnam Shamriz, Hamideh Ofoghi
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-018-36589-5

Kinetic and thermodynamic effects of phosphorylation on p53 binding to MDM2
Cited by: 23
Author(s): Shilpa Yadahalli, José L. Neira, Christopher M. Johnson, Yaw Sing Tan, Pamela J. E. Rowling, Anasuya Chattopadhyay, Chandra Verma, Laura S. Itzhaki
Software Mentions: 2
Published: over 7 years ago