10.1038/s41598-021-91090-w

An alternative domain-swapped structure of the Pyrococcus horikoshii PolII mini-intein
Cited by: 1
Author(s): Jennie E. Williams, Mario V. Jaramillo, Li Zhong, Jing Zhao, Qianqian Wang, Hongmin Li, Kenneth V. Mills
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-91765-4

BING, a novel antimicrobial peptide isolated from Japanese medaka plasma, targets bacterial envelope stress response by suppressing cpxR expression
Cited by: 4
Author(s): Mingdong Dong, Shu Hin Kwok, Joseph L. Humble, Yimin Liang, Sze Wing Tang, Kin Hung Tang, Man Kit Tse, Josh Haipeng Lei, R. Rajkumar, Mohamad Koohi‐Moghadam, Doris Wai Ting Au, Hongyan Sun, Yun Wah Lam
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-93305-6

In silico designing of vaccine candidate against Clostridium difficile
Cited by: 8
Author(s): Srijita Basak, Debashrito Deb, Utkarsh Narsaria, Tamalika Kar, Filippo Castiglione, Indraneel Sanyal, Pratap D. Bade, Anurag P. Srivastava
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-021-96217-7

A multiscale approach for bridging the gap between potency, efficacy, and safety of small molecules directed at membrane proteins
Cited by: 7
Author(s): Rodrigo Aguayo‐Ortiz, Jeffery Creech, Eric N. Jiménez-Vázquez, Guadalupe Guerrero-Serna, Nulang Wang, A.M. Rocha, Todd J. Herron, L. Michel Espinoza-Fonseca
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-021-97828-w

Evaluation of the relationship between the 14-3-3ε protein and LvRab11 in the shrimp Litopenaeus vannamei during WSSV infection
Cited by: 1
Author(s): Guson Boonyoung, Tanate Panrat, Amornrat Phongdara, Warapond Wanna
Software Mentions: 2
Published: almost 5 years ago

10.1155/2016/9420692

Structural Exploration and Conformational Transitions in MDM2 upon DHFR Interaction fromHomo sapiens: A Computational Outlook for Malignancy via Epigenetic Disruption
Cited by: 4
Author(s): Arundhati Banerjee, Sujay Ray
Software Mentions: 2
Published: over 10 years ago

10.1186/s40064-016-2443-7

Hypothetical granulin-like molecule from Fasciola hepatica identified by bioinformatics analysis
Cited by: 3
Author(s): Claudia Machicado, Luis A. Marcos, Mirko Zimic
Software Mentions: 2
Published: about 10 years ago

10.1063/1.5086436

Time-resolved x-ray crystallography capture of a slow reaction tetrahydrofolate intermediate
Cited by: 4
Author(s): Heidi B. Cao, Jeffrey Skolnick
Software Mentions: 2
Published: over 7 years ago

10.1016/j.str.2013.04.008

Three-Dimensional RNA Structure of the Major HIV-1 Packaging Signal Region
Cited by: 30
Author(s): James Stephenson, Haitao Li, Julia C. Kenyon, Martyn F. Symmons, David Klenerman, Andrew M. L. Lever
Software Mentions: 2
Published: about 13 years ago

10.1016/j.str.2014.04.015

Structure of the LdcB LD-Carboxypeptidase Reveals the Molecular Basis of Peptidoglycan Recognition
Cited by: 31
Author(s): C.N. Hoyland, Christine Aldridge, Robert M. Cleverley, Marie Clémence Duchêne, G. Minasov, O. Onopriyenko, Karzan R. Sidiq, P.J. Stogios, W.F. Anderson, Richard A. Daniel, Alexei Savchenko, Waldemar Vollmer, Richard J. Lewis
Software Mentions: 2
Published: about 12 years ago

10.1016/j.str.2015.10.016

Exploiting Transient Protein States for the Design of Small-Molecule Stabilizers of Mutant p53
Cited by: 44
Author(s): A.C. Joerger, Matthias R. Bauer, Rainer Wilcken, Matthias G. J. Baud, Hannes Harbrecht, Thomas E. Exner, Frank M. Boeckler, John Spencer, Alan R. Fersht
Software Mentions: 2
Published: over 10 years ago

10.1016/j.str.2018.05.001

Structural Basis of Phosphatidic Acid Sensing by APH in Apicomplexan Parasites
Cited by: 22
Author(s): Nick Darvill, David Jean Dubois, Sarah L. Rouse, Pierre‐Mehdi Hammoudi, Thomas C. A. Blake, Stefi Benjamin, Bing Liu, Dominique Soldati‐Favre, Steve Matthews
Software Mentions: 2
Published: almost 8 years ago

10.1016/j.str.2018.12.007

Dynamic Role of the G Protein in Stabilizing the Active State of the Adenosine A2A Receptor
Cited by: 28
Author(s): Sangbae Lee, Anita K. Nivedha, Christopher G. Tate, Nagarajan Vaidehi
Software Mentions: 2
Published: over 7 years ago

10.1016/j.str.2019.11.005

Lipid Interactions of a Ciliary Membrane TRP Channel: Simulation and Structural Studies of Polycystin-2
Cited by: 32
Author(s): Qinrui Wang, Robin A. Corey, George Hedger, Prafulla Aryal, M. Grieben, Chady Nasrallah, Agnese Baronina, Ashley C.W. Pike, Jiye Shi, E.P. Carpenter, Mark S.P. Sansom
Software Mentions: 2
Published: over 6 years ago

10.1128/mBio.01577-20

Beyond Toxin Transport: Novel Role of ABC Transporter for Enzymatic Machinery of Cereulide NRPS Assembly Line
Cited by: 10
Author(s): Agnieszka Gacek‐Matthews, Zuzana Chromiková, Michael Sulyok, Genia Lücking, Imrich Barák, Monika Ehling‐Schulz
Software Mentions: 2
Published: over 5 years ago

10.1107/S2059798317016618

Molecular architectures of benzoic acid-specific type III polyketide synthases
Cited by: 11
Author(s): Charles Stewart, Kate Woods, Greg Macias, Andrew C. Allan, Roger P. Hellens, Joseph P. Noel
Software Mentions: 2
Published: over 8 years ago

10.18632/aging.103396

Identification of cardiovascular health gene variants related to longevity in a Chinese population
Cited by: 3
Author(s): Li Zhang, Chen Bai, Chao Nie, Xiaoquan Zhu, Huiping Yuan, Liang Sun, Qi Zhou, Xiaoling Li, Xuan Xian, Fan Yang, Guo‐Fang Pang, Yuan Lv, Xiaolin Ni, Chengping Hu, Ze Yang
Software Mentions: 2
Published: almost 6 years ago

10.18632/aging.203098

Revealing the therapeutic targets and molecular mechanisms of emodin-treated coronavirus disease 2019 via a systematic study of network pharmacology
Cited by: 13
Author(s): Haixia Du, Jiaqi Zhu, Jing Chen, Huifen Zhou, Jiehong Yang, Haitong Wan
Software Mentions: 2
Published: about 5 years ago

10.1128/mBio.02531-20

Structural Basis for a Neutralizing Antibody Response Elicited by a Recombinant Hantaan Virus Gn Immunogen
Cited by: 10
Author(s): Ilona Rissanen, Stefanie A. Krumm, Robert Stass, Annalis Whitaker, James E. Voss, Emily A. Bruce, Sylvia Rothenberger, Stefan Kunz, Dennis R. Burton, J.T. Huiskonen, Jason Botten, Thomas A. Bowden, Katie J. Doores
Software Mentions: 2
Published: almost 5 years ago

10.1074/jbc.M114.630681

Analysis of Human Dopamine D3 Receptor Quaternary Structure
Cited by: 23
Author(s): Sara Marsango, Gianluigi Caltabiano, Chantévy Pou, María José Varela Liste, Graeme Milligan
Software Mentions: 2
Published: about 11 years ago

10.1128/mSystems.00650-19

Horizontally Acquired Quorum-Sensing Regulators Recruited by the PhoP Regulatory Network Expand the Host Adaptation Repertoire in the Phytopathogen <i>Pectobacterium brasiliense</i>
Cited by: 10
Author(s): Daniel Bellieny-Rabelo, Ntombikayise Precious Nkomo, Divine Yufetar Shyntum, Lucy N. Moleleki
Software Mentions: 2
Published: over 6 years ago

10.1002/humu.23777

Mutations in<i>ELAC2</i>associated with hypertrophic cardiomyopathy impair mitochondrial tRNA 3′‐end processing
Cited by: 27
Author(s): Makenzie Saoura, Christopher Powell, Robert Kopajtich, Ahmad Alahmad, Haya H. Al-Balool, Buthaina Albash, Majid Alfadhel, Charlotte L. Alston, Enrico Bertini, Penelope E. Bonnen, Drago Bratkovic, Rosalba Carrozzo, Maria Alice Donati, Michela Di Nottia, Daniele Ghezzi, Amy Goldstein, Eric Haan, Rita Horvath, Joanne Hughes, Federica Invernizzi, Eleonora Lamantea, Benjamin Lucas, Kyla‐Gaye Pinnock, Maria Pujantell, Shamima Rahman, Pedro Rebelo‐Guiomar, Saikat Santra, Daniela Verrigni, Robert McFarland, Holger Prokisch, Robert W. Taylor, Louis Levinger, Michal Minczuk
Software Mentions: 2
Published: about 7 years ago

10.3390/molecules26040837

Exploring the Distinct Binding and Activation Mechanisms for Different CagA Oncoproteins and SHP2 by Molecular Dynamics Simulations
Cited by: 3
Author(s): Quan Wang, Wencheng Zhao, Xueqi Fu, Qing‐Chuan Zheng
Software Mentions: 2
Published: over 5 years ago

10.1186/s12883-021-02215-7

Study of the collagen type VI alpha 3 (COL6A3) gene in Parkinson’s disease
Cited by: 5
Author(s): Chong‐Yao Jin, Ran Zheng, Zhi‐Hao Lin, Nai‐Jia Xue, Ying Chen, Ting Gao, Yiqun Yan, Yi Fang, Yaping Yan, Xinzhen Yin, Jun Tian, Jiali Pu, Baorong Zhang
Software Mentions: 2
Published: about 5 years ago

10.1107/S2052252520001840

Structure of the MICU1–MICU2 heterodimer provides insights into the gatekeeping threshold shift
Cited by: 21
Author(s): Jongseo Park, Lee Young-Jin, Tae‐In Park, Jung Youn Kang, Sang A Mun, Minho Jin, Jamie O. Yang, Soo Hyun Eom
Software Mentions: 2
Published: over 6 years ago

10.1107/S2052252518018274

A cytosine modification mechanism revealed by the structure of a ternary complex of deoxycytidylate hydroxymethylase from bacteriophage T4 with its cofactor and substrate
Cited by: 4
Author(s): Si Hoon Park, Se Won Suh, Hyun Kyu Song
Software Mentions: 2
Published: over 7 years ago

10.1074/jbc.M115.682203

Structure of a CGI-58 Motif Provides the Molecular Basis of Lipid Droplet Anchoring
Cited by: 41
Author(s): Andras Boeszoermenyi, Harald M. Nagy, Haribabu Arthanari, Christoph Pillip, Hanna Lindermuth, Rafael E. Luna, Gerhard Wagner, Rudolf Zechner, Klaus Zangger, Monika Oberer
Software Mentions: 2
Published: almost 11 years ago

10.1074/jbc.M113.543546

Evidence for Steric Regulation of Fibrinogen Binding to Staphylococcus aureus Fibronectin-binding Protein A (FnBPA)
Cited by: 29
Author(s): Vaclav Stemberk, Richard Jones, Olga V. Moroz, Kate E. Atkin, Andrew M. Edwards, J.P. Turkenburg, Andrew Leech, Ruth C. Massey, Jennifer R. Potts
Software Mentions: 2
Published: about 12 years ago

10.1107/S1399004715002308

Capture and X-ray diffraction studies of protein microcrystals in a microfluidic trap array
Cited by: 67
Author(s): A.Y. Lyubimov, Thomas D. Murray, Antoine Koehl, Ismail Emre Araci, Monarin Uervirojnangkoorn, Oliver B. Zeldin, Aina E. Cohen, S. Michael Soltis, E.L. Baxter, Aaron S. Brewster, Nicholas K. Sauter, Axel T. Brunger, James M. Berger
Software Mentions: 2
Published: over 11 years ago

10.3389/fphar.2021.697704

Exploring the Potential Molecular Mechanism of Scutellaria baicalensis Georgi in the Treatment of Gastric Cancer Based on Network Pharmacological Analysis and Molecular Docking Technology
Cited by: 12
Author(s): Yi Tu, Qiong Wu, Jiarui He, Jiasheng Xu, Shasha Yu, Qingfei Wang, Yunqi Cheng, Qijun Yang, Shan Xu, Yi Cao
Software Mentions: 2
Published: almost 5 years ago

10.1107/S2052252519002926

Determination of the molecular basis for coprogen import by Gram-negative bacteria
Cited by: 16
Author(s): Rhys Grinter, Trevor Lithgow
Software Mentions: 2
Published: over 7 years ago

10.1074/jbc.M114.557900

Engagement of Nucleotide-binding Oligomerization Domain-containing Protein 1 (NOD1) by Receptor-interacting Protein 2 (RIP2) Is Insufficient for Signal Transduction
Cited by: 24
Author(s): Sophie Mayle, Joseph P. Boyle, Eiki Sekine, Birte Zurek, Thomas A. Kufer, Tom P. Monie
Software Mentions: 2
Published: almost 12 years ago

10.3389/fphar.2020.561834

Demystifying the Molecular Basis of Pyrazoloquinolinones Recognition at the Extracellular α1+/β3- Interface of the GABAA Receptor by Molecular Modeling
Cited by: 3
Author(s): Natesh Singh, Bruno O. Villoutreix
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12870-016-0900-7

Modulation of plant growth in vivo and identification of kinase substrates using an analog-sensitive variant of CYCLIN-DEPENDENT KINASE A;1
Cited by: 13
Author(s): Hirofumi Harashima, Nico Dißmeyer, Philippe Hammann, Yuko Nomura, Katharina Kramer, Hirofumi Nakagami, Arp Schnittger
Software Mentions: 2
Published: almost 10 years ago

10.1107/S2052252517013124

Mix-and-diffuse serial synchrotron crystallography
Cited by: 90
Author(s): Kenneth R. Beyerlein, D. Dierksmeyer, Valerio Mariani, Manuela Kuhn, Iosifina Sarrou, Angelica Ottaviano, Salah Awel, J. Knoška, Silje Skeide Fuglerud, Olof Jönsson, Stephan Stern, Max O. Wiedorn, Oleksandr Yefanov, Luigi Adriano, Richard Bean, Anja Burkhardt, P. Fischer, Michaël Heymann, Daniel A. Horke, Katharina Jungnickel, Elena G. Kovaleva, O. Lorbeer, Markus Metz, Jan Meyer, Andrew J. Morgan, Kanupriya Pande, S. Panneerselvam, Carolin Seuring, A. Tolstikova, J. Lieske, S. Aplin, Manfred Roessle, Thomas A. White, Henry N. Chapman, A. Meents, D. Oberthüer
Software Mentions: 2
Published: over 8 years ago

10.1107/S2052252520013615

Joint neutron/X-ray crystal structure of a mechanistically relevant complex of perdeuterated urate oxidase and simulations provide insight into the hydration step of catalysis
Cited by: 5
Author(s): Lindsay McGregor, Tamás Földes, Soi Bui, Martine Moulin, Nicolas Coquelle, Matthew P. Blakeley, Edina Rosta, Roberto A. Steiner
Software Mentions: 2
Published: over 5 years ago

10.1186/s12870-019-2136-9

Defining the function of SUMO system in pod development and abiotic stresses in Peanut
Cited by: 11
Author(s): Yiyang Liu, Jianqing Zhu, Sheng Sun, Feng Cui, Han Yan, Zhenying Peng, Xuejie Zhang, Shubo Wan, Guowei Li
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.49439

Decoding WW domain tandem-mediated target recognitions in tissue growth and cell polarity
Cited by: 33
Author(s): Zhijie Lin, Yang Zhou, Ruiling Xie, Zeyang Ji, Kun‐Liang Guan, Mingjie Zhang
Software Mentions: 2
Published: almost 7 years ago

10.1186/s13068-017-1009-4

Determination of the native features of the exoglucanase Cel48S from Clostridium thermocellum
Cited by: 21
Author(s): Yajun Li, Shiyue Liu, Sheng Dong, Renmin Li, Yingang Feng, Qiu Cui
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.56185

Moyamoya disease factor RNF213 is a giant E3 ligase with a dynein-like core and a distinct ubiquitin-transfer mechanism
Cited by: 68
Author(s): Juraj Ahel, Anita Lehner, Antonia Vogel, Alexander Schleiffer, Anton Meinhart, David Haselbach, Tim Clausen
Software Mentions: 2
Published: about 6 years ago

10.3389/fphar.2015.00017

Optimization of the cyclotide framework to improve cell penetration properties
Cited by: 26
Author(s): Yen‐Hua Huang, Stephanie Chaousis, Olivier Cheneval, David J. Craik, Sónia Troeira Henriques
Software Mentions: 2
Published: over 11 years ago

10.1074/jbc.M114.598201

Structure-Function Analyses of Human Kallikrein-related Peptidase 2 Establish the 99-Loop as Master Regulator of Activity
Cited by: 28
Author(s): Wolfgang Skala, Daniel T. Utzschneider, Viktor Magdolen, Mekdes Debela, Songjun Guo, Charles S. Craik, Hans Brandstetter, Peter Goettig
Software Mentions: 2
Published: over 11 years ago

10.1074/jbc.M117.816348

Exceptionally high-affinity Ras binders that remodel its effector domain
Cited by: 33
Author(s): John H. McGee, So Youn Shim, Seung-Joo Lee, Paige Swanson, Sam Y. Jiang, Michael A. Durney, Gregory L. Verdine
Software Mentions: 2
Published: over 8 years ago

10.3389/fphar.2020.00526

Kaempferol, a Major Flavonoid in Ginkgo Folium, Potentiates Angiogenic Functions in Cultured Endothelial Cells by Binding to Vascular Endothelial Growth Factor
Cited by: 26
Author(s): Weihui Hu, Huaiyou Wang, Yiteng Xia, Diana Dai, Qingping Xiong, Tina Tingxia Dong, Ran Duan, Gallant Kar-Lun Chan, Qi Qin, Karl Wah-Keung Tsim
Software Mentions: 2
Published: about 6 years ago

10.3389/fonc.2019.01294

p38α Mitogen-Activated Protein Kinase Is a Druggable Target in Pancreatic Adenocarcinoma
Cited by: 19
Author(s): Ling Yang, Xiaoting Sun, Ying Ye, Yongtian Lu, Jiane Zuo, Wen Li, Adrian H. Elcock, Shun Zhu
Software Mentions: 2
Published: over 6 years ago

10.3389/fped.2019.00343

Biallelic Missense Mutation in the ECEL1 Underlies Distal Arthrogryposis Type 5 (DA5D)
Cited by: 14
Author(s): Muhammad Umair, Amjad Khan, Amir Hayat, Safdar Abbas, Abdulaziz Asiri, Muhammad Younus, Wajid Amin, Shoaib Nawaz, Shazia Khan, Erum Malik, Majid Alfadhel, Farooq Ahmad
Software Mentions: 2
Published: almost 7 years ago

10.1021/acsnano.1c00155

Effect of Water Models on Transmembrane Self-Assembled Cyclic Peptide Nanotubes
Cited by: 11
Author(s): Martín Calvelo, Charlotte I. Lynch, Juan R. Granja, Mark S. P. Sansom, Rebeca García‐Fandiño
Software Mentions: 2
Published: over 5 years ago

10.1186/s13068-019-1457-0

The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases
Cited by: 77
Author(s): Leander Sützl, Gabriel Foley, Elizabeth M. J. Gillam, Mikael Bodén, Dietmar Haltrich
Software Mentions: 2
Published: about 7 years ago

10.3389/fnmol.2018.00330

Molecular Details of Retinal Guanylyl Cyclase 1/GCAP-2 Interaction
Cited by: 9
Author(s): Anne Rehkamp, Dirk Tänzler, Claudio Iacobucci, Ralph Golbik, Christian Ihling, Andrea Sinz
Software Mentions: 2
Published: almost 8 years ago

10.3389/fonc.2021.606820

Interpreting Sequence Variation in PDAC-Predisposing Genes Using a Multi-Tier Annotation Approach Performed at the Gene, Patient, and Cohort Level
Cited by: 3
Author(s): Michael T. Zimmermann, Angela Mathison, Tim Stodola, Douglas B. Evans, Jenica Abrudan, Wendy Demos, Michael Tschannen, Mohammed Aldakkak, Jennifer L. Geurts, Gwen Lomberk, Susan Tsai, Raúl Urrutia
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.39720

Selective agonist of TRPML2 reveals direct role in chemokine release from innate immune cells
Cited by: 63
Author(s): Eva Plesch, Cheng‐Chang Chen, Elisabeth Butz, Anna Scotto Rosato, Einar Krogsaeter, Hua Yue, Karin Bartel, Marco Keller, Dina Robaa, Daniel Teupser, Lesca M. Holdt, Angelika M. Vollmar, Wolfgang Sippl, Rosa Puertollano, Diego L. Medina, Martin Biel, Christian Wahl‐Schott, Franz Bracher, Christian Grimm
Software Mentions: 2
Published: over 7 years ago

10.1186/1753-6561-9-S6-S5

MoFlow: visualizing conformational changes in molecules as molecular flow improves understanding
Cited by: 7
Author(s): Shareef M Dabdoub, R. Wolfgang Rumpf, Amber D. Shindhelm, William C. Ray
Software Mentions: 2
Published: almost 11 years ago

10.1080/19768354.2020.1808529

The immunostimulatory effect of indole-6-carboxaldehyde isolated from <i>Sargassum thunbergii</i> <b>(Mertens) Kuntze</b> in RAW 264.7 macrophages
Cited by: 5
Author(s): Cheol Park, Hyun Hwangbo, Hyesook Lee, Gi‐Young Kim, Hee‐Jae Cha, Sung Hyun Choi, Suhkmann Kim, Heui‐Soo Kim, Seok Joong Yun, Wun-Jae Kim, You‐Jin Jeon, Yung Hyun Choi
Software Mentions: 2
Published: about 6 years ago

10.3389/fphar.2020.00246

Structure-Based Screening of Plasmodium berghei Glutathione S-Transferase Identifies CB-27 as a Novel Antiplasmodial Compound
Cited by: 5
Author(s): Emilee E. Colón-Lorenzo, Daisy D. Colón-López, Joel Vega-Rodríguez, Alice Dupin, David A. Fidock, Abel Baerga‐Ortiz, José G. Ortíz, Jürgen Bosch, Adelfa E. Serrano
Software Mentions: 2
Published: over 6 years ago

10.1186/1756-0500-5-391

BetaSearch: a new method for querying β-residue motifs
Cited by: 1
Author(s): Hui Kian Ho, Graeme Gange, Michael J. Kuiper, Kotagiri Ramamohanarao
Software Mentions: 2
Published: almost 14 years ago

10.3389/fmolb.2021.716466

SeamDock: An Interactive and Collaborative Online Docking Resource to Assist Small Compound Molecular Docking
Cited by: 17
Author(s): Samuel Murail, Sjoerd J. de Vries, Julien Rey, Gautier Moroy, Pierre Tufféry
Software Mentions: 2
Published: almost 5 years ago

10.1186/1756-0500-5-626

Crystal structures of wild-type and mutated cyclophilin B that causes hyperelastosis cutis in the American quarter horse
Cited by: 8
Author(s): Sergei P. Boudko, Yoshihiro Ishikawa, Thomas F. Lerch, Jay C. Nix, Michael S. Chapman, Hans Peter Bächinger
Software Mentions: 2
Published: over 13 years ago

10.1002/ana.24073

<i>GRIN2B</i> mutations in west syndrome and intellectual disability with focal epilepsy
Cited by: 176
Author(s): Johannes R. Lemke, Rik Hendrickx, Kirsten Geider, Bodo Laube, Michael Schwake, Robert J. Harvey, Victoria M. James, Alex Pepler, Isabelle Steiner, Konstanze Hörtnagel, John Neidhardt, Susanne Ruf, Markus Wolff, Deborah Bartholdi, Roberto Caraballo, Konrad Platzer, Arvid Suls, Peter De Jonghe, Saskia Biskup, Sarah Weckhuysen
Software Mentions: 2
Published: over 12 years ago

10.7554/eLife.09375

Mechanism of Na+-dependent citrate transport from the structure of an asymmetrical CitS dimer
Cited by: 53
Author(s): David Wöhlert, Maria J Grötzinger, Werner Kühlbrandt, Özkan Yıldız
Software Mentions: 2
Published: over 10 years ago

10.3389/fmolb.2020.00029

Molecular Simulation of Oncostatin M and Receptor (OSM–OSMR) Interaction as a Potential Therapeutic Target for Inflammatory Bowel Disease
Cited by: 19
Author(s): Qingqing Du, Qian Yan, Weiwei Xue
Software Mentions: 2
Published: over 6 years ago

10.3389/fmolb.2015.00056

A script to highlight hydrophobicity and charge on protein surfaces
Cited by: 83
Author(s): Dominique Hagemans, Ianthe A. E. M. van Belzen, Tania Morán Luengo, Stefan Rüdiger
Software Mentions: 2
Published: over 10 years ago

10.3389/fmicb.2018.00371

Intrahost Norovirus Evolution in Chronic Infection Over 5 Years of Shedding in a Kidney Transplant Recipient
Cited by: 12
Author(s): Andrej Steyer, Tilen Konte, Martin Sagadin, Marko Kolenc, Andrej Škoberne, Julija Germ, Tadeja Dovč-Drnovšek, Miha Arnol, Mateja Poljšak-Prijatelj
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2018.01942

Look and Outlook on Enzyme-Mediated Macrolide Resistance
Cited by: 66
Author(s): Tolou Golkar, Michał Zieliński, A.M. Berghuis
Software Mentions: 2
Published: almost 8 years ago

10.1107/S0907444913002023

The structures of<i>Arabidopsis</i>Deg5 and Deg8 reveal new insights into HtrA proteases
Cited by: 13
Author(s): Wei Sun, Feng Gao, H. Fan, Xiaoyue Shan, Renhua Sun, Lin Liu, Weimin Gong
Software Mentions: 2
Published: about 13 years ago

10.3389/fphar.2018.00008

Suppressive Effects of Clerodendrum volubile P Beauv. [Labiatae] Methanolic Extract and Its Fractions on Type 2 Diabetes and Its Complications
Cited by: 35
Author(s): Ochuko L. Erukainure, Rahman M. Hafizur, Nurul Kabir, M. Iqbal Choudhary, Olubunmi Atolanı, Priyanka Banerjee, Robert Preißner, Chika I. Chukwuma, Aliyu Muhammad, Eric O. Amonsou, Md. Shahidul Islam
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2018.00649

Mechanistic and Structural Insights Into the Unique TetR-Dependent Regulation of a Drug Efflux Pump in Mycobacterium abscessus
Cited by: 24
Author(s): Matthias Richard, Ana Victoria Gutiérrez, Albertus Viljoen, Éric Ghigo, Mickaël Blaise, Laurent Kremer
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2018.01925

Characterization of ML-005, a Novel Metaproteomics-Derived Esterase
Cited by: 6
Author(s): Premankur Sukul, Natalie Lupilov, Lars I. Leichert
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2021.670681

Structural Basis of RICs Iron Donation for Iron-Sulfur Cluster Biogenesis
Cited by: 4
Author(s): Liliana S. O. Silva, Pedro M. Matías, Célia V. Romão, Lı́gia M. Saraiva
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.00327

The AFF4 scaffold binds human P-TEFb adjacent to HIV Tat
Cited by: 65
Author(s): Ursula Schulze‐Gahmen, Heather Upton, Andrew Birnberg, Katherine Bao, Seemay Chou, Nevan J. Krogan, Qiang Zhou, Tom Alber
Software Mentions: 2
Published: over 13 years ago

10.3389/fmicb.2020.605705

Discovery of an Antibiotic-Related Small Protein of Biocontrol Strain Pseudomonas sp. Os17 by a Genome-Mining Strategy
Cited by: 1
Author(s): Kasumi Takeuchi, Wataru Tsuchiya, Zui Fujimoto, Kosumi Yamada, Nobutaka Someya, Toshimasa Yamazaki
Software Mentions: 2
Published: over 5 years ago

10.1107/S1399004713033634

Multi-PAS domain-mediated protein oligomerization of PpsR from<i>Rhodobacter sphaeroides</i>
Cited by: 11
Author(s): Udo Heintz, Anton Meinhart, Andreas Winkler
Software Mentions: 2
Published: over 12 years ago

10.3389/fmicb.2021.632095

Integrated Proteomic and Transcriptomic Analyses Reveal the Roles of Brucella Homolog of BAX Inhibitor 1 in Cell Division and Membrane Homeostasis of Brucella suis S2
Cited by: 2
Author(s): Guangdong Zhang, Fangli Zhong, Lei Chen, Peipei Qin, Junmei Li, Feijie Zhi, Lulu Tian, Dong Zhou, Peng Lin, Huatao Chen, Kai-Fu Tang, Wei Liu, Yaping Jin, Aihua Wang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12900-018-0096-1

Deciphering evolution of immune recognition in antibodies
Cited by: 4
Author(s): Harmeet Kaur, Neetu Sain, Debasisa Mohanty, Dinakar M. Salunke
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2015.01380

A Zinc-Dependent Protease AMZ-tk from a Thermophilic Archaeon is a New Member of the Archaemetzincin Protein Family
Cited by: 9
Author(s): Baolei Jia, Zhengqun Li, Jinliang Liu, Ying Sun, Xiaomeng Jia, Yuan Xuan, Jiayan Zhang, Che Ok Jeon
Software Mentions: 2
Published: over 10 years ago

10.3390/antibiotics9040148

Development of Staphylococcus Enzybiotics: The Ph28 Gene of Staphylococcus epidermidis Phage PH15 Is a Two-Domain Endolysin
Cited by: 5
Author(s): Magdy Mohamed Muharram, Ashraf Abulhamd, Mohammed F. Aldawsari, Mohammed H. Alqarni, Nikolaos E. Labrou
Software Mentions: 2
Published: over 6 years ago

10.1107/S2059798319010878

X-ray structure of the direct electron transfer-type FAD glucose dehydrogenase catalytic subunit complexed with a hitchhiker protein
Cited by: 17
Author(s): Hiromi Yoshida, Katsuhiro Kojima, Masaki Shiota, Keiichi Yoshimatsu, Tomohiko Yamazaki, Stefano Ferri, Wakako Tsugawa, Shigehiro Kamitori, Koji Sode
Software Mentions: 2
Published: almost 7 years ago

10.1186/1472-6807-13-17

Short tandem repeats in the inhibitory domain of the mineralocorticoid receptor: prediction of a β-solenoid structure
Cited by: 9
Author(s): Metaxia Vlassi, Katharina Brauns, Miguel A. Andrade‐Navarro
Software Mentions: 2
Published: over 13 years ago

10.1107/S1399004715001443

Structure of the N-terminal domain of the protein Expansion: an `Expansion' to the Smad MH2 fold
Cited by: 8
Author(s): Mads Beich-Frandsen, Eric Aragón, Marta Llimargas, J. Benach, Antoni Riéra, Joan Pous, María J. Macias
Software Mentions: 2
Published: over 11 years ago

10.3389/fmicb.2019.02079

A Unique Homo-Hexameric Structure of 2-Aminomuconate Deaminase in the Bacterium Pseudomonas species AP–3
Cited by: 3
Author(s): Yanjuan Chen, Yiping Chen, Hua Jiang, Deren Lu, Tingting Hu, Gang Bi, Yuping Ran, Bin Yu, Hao Dong, Dan Su
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2021.669220

Interrogating the Role of the Two Distinct Fructose-Bisphosphate Aldolases of Bacillus methanolicus by Site-Directed Mutagenesis of Key Amino Acids and Gene Repression by CRISPR Interference
Cited by: 6
Author(s): Kerstin Schultenkämper, Desirée D. Gütle, Marina Gil López, Laura B. Keller, Lin Zhang, Oliver Einsle, Jean‐Pierre Jacquot, Volker F. Wendisch
Software Mentions: 2
Published: about 5 years ago

10.1186/1472-6807-12-32

Ternary complex structures of human farnesyl pyrophosphate synthase bound with a novel inhibitor and secondary ligands provide insights into the molecular details of the enzyme’s active site closure
Cited by: 22
Author(s): Jaeok Park, Yih‐Shyan Lin, Joris W. De Schutter, Youla S. Tsantrizos, Albert M. Berghuis
Software Mentions: 2
Published: over 13 years ago

10.1107/S2059798321006513

Exploring ligand dynamics in protein crystal structures with ensemble refinement
Cited by: 3
Author(s): Octav Caldararu, Vilhelm Ekberg, D.T. Logan, Esko Oksanen, Ulf Ryde
Software Mentions: 2
Published: almost 5 years ago

10.1186/1472-6807-12-29

MTMDAT-HADDOCK: High-throughput, protein complex structure modeling based on limited proteolysis and mass spectrometry
Cited by: 11
Author(s): Janosch Hennig, Sjoerd J. de Vries, Klaus Dm Hennig, Leah Randles, Kylie J. Walters, Maria Sunnerhagen, Alexandre M. J. J. Bonvin
Software Mentions: 2
Published: over 14 years ago

10.1107/S0907444912051670

Structural studies of<i>Pseudomonas</i>and<i>Chromobacterium</i>ω-aminotransferases provide insights into their differing substrate specificity
Cited by: 50
Author(s): C. Sayer, Michail N. Isupov, Aaron Westlake, Jennifer A. Littlechild
Software Mentions: 2
Published: over 13 years ago

10.1107/S2059798319011938

The flavin mononucleotide cofactor in α-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level
Cited by: 2
Author(s): S.Y. Lyu, Kuan Hung Lin, Hsien‐Wei Yeh, Yi Shan Li, Chun Man Huang, Yung Lin Wang, Hao Wei Shih, N.S. Hsu, Chang Jer Wu, Tsung Lin Li
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2021.659808

A MexR Mutation Which Confers Aztreonam Resistance to Pseudomonas aeruginosa
Cited by: 9
Author(s): Zhenzhen Ma, Congjuan Xu, Xinxin Zhang, Dan Wang, Xiaolei Pan, Huimin Liu, Guangbo Zhu, Fang Bai, Zhihui Cheng, Weihui Wu, Yongxin Jin
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.10034

Structural determinants of nuclear export signal orientation in binding to exportin CRM1
Cited by: 68
Author(s): Ho Yee Joyce Fung, Szu Chin Fu, Chad A. Brautigam, Yuh Min Chook
Software Mentions: 2
Published: almost 11 years ago

10.3389/fmed.2021.694668

Saudi Familial Hypercholesterolemia Patients With Rare LDLR Stop Gain Variant Showed Variable Clinical Phenotype and Resistance to Multiple Drug Regimen
Cited by: 6
Author(s): Zuhier Awan, Omran M. Rashidi, Bandar Ali Al-Shehri, Kaiser Jamil, Ramu Elango, Jumana Y. Al‐Aama, Robert A. Hegele, Noor Ahmad Shaik
Software Mentions: 2
Published: about 5 years ago

10.1186/1754-6834-7-2

Ligninolytic peroxidase genes in the oyster mushroom genome: heterologous expression, molecular structure, catalytic and stability properties, and lignin-degrading ability
Cited by: 99
Author(s): Elena Fernández‐Fueyo, Francisco J. Ruíz-Dueñas, Marı́a Jesús Martı́nez, Antonio Romero, Kenneth E. Hammel, Francisco J. Medrano, Ángel T. Martı́nez
Software Mentions: 2
Published: over 12 years ago

10.1186/1472-6807-10-16

Structural definition and substrate specificity of the S28 protease family: the crystal structure of human prolylcarboxypeptidase
Cited by: 48
Author(s): S.M. Soisson, Sangita Patel, Pravien Abeywickrema, Noel Byrne, Ronald E. Diehl, Dawn L. Hall, Rachael E. Ford, John C. Reid, Keith Rickert, Jennifer M. Shipman, Sujata Sharma, Kevin J. Lumb
Software Mentions: 2
Published: over 16 years ago

10.3390/antib9020010

Ion Binding Properties of a Naturally Occurring Metalloantibody
Cited by: 0
Author(s): Elinaz Farokhi, Jonathan K. Fleming, M. Frank Erasmus, Aaron D Ward, Yunjin Wu, Maria Gaby Rivero de Gutiérrez, Jonathan M. Wojciak, Tom Huxford
Software Mentions: 2
Published: about 6 years ago

10.3389/fimmu.2014.00022

Immunoglobulin and T Cell Receptor Genes: IMGT® and the Birth and Rise of Immunoinformatics
Cited by: 168
Author(s): Marie‐Paule Lefranc
Software Mentions: 2
Published: over 12 years ago

10.3389/fmed.2021.724826

Novel MYO1D Missense Variant Identified Through Whole Exome Sequencing and Computational Biology Analysis Expands the Spectrum of Causal Genes of Laterality Defects
Cited by: 5
Author(s): Rabab Said Alsafwani, Khalidah Khalid Nasser, Thoraia Shinawi, Babajan Banaganapalli, Hanan Abdelhalim ElSokary, Zhaher F. Zaher, Noor Ahmad Shaik, Gaser Abdelmohsen, Jumana Y. Al‐Aama, Adam J. Shapiro, Osman O. Al‐Radi, Turki S Alahmadi
Software Mentions: 2
Published: almost 5 years ago

10.1107/S0907444913021811

SCEDS: protein fragments for molecular replacement in<i>Phaser</i>
Cited by: 16
Author(s): Airlie J. McCoy, Robert A. Nicholls, Thomas R. Schneider
Software Mentions: 2
Published: almost 13 years ago

10.1186/s12900-015-0037-1

Binding of undamaged double stranded DNA to vaccinia virus uracil-DNA Glycosylase
Cited by: 8
Author(s): Norbert Schormann, Surajit Banerjee, Robert P. Ricciardi, Debasish Chattopadhyay
Software Mentions: 2
Published: about 11 years ago

10.1107/S2059798318009397

High-pressure protein crystal structure analysis of <i>Escherichia coli</i> dihydrofolate reductase complexed with folate and NADP⁺
Cited by: 16
Author(s): T. Nagae, Hiroyuki Yamada, Nobuhisa Watanabe
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2018.03329

Structural and Physiological Exploration of Salmonella Typhi YfdX Uncovers Its Dual Function in Bacterial Antibiotic Stress and Virulence
Cited by: 6
Author(s): Hye Seon Lee, Mi Kyung Lee, Jun‐Seob Kim, Hae-Ran Lee, Hang‐Sik Shin, Moo‐Seung Lee, Kyeong Sik Jin, Cheol-Hee Kim, Bonsu Ku, Choong-Min Ryu, Seung Jun Kim
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2020.598789

Isolation, Characterization and Structure Elucidation of a Novel Lantibiotic From Paenibacillus sp.
Cited by: 10
Author(s): Jerzy Karczewski, Stephen P Krasucki, Papa Nii Asare‐Okai, Carl Diehl, Andrew Friedman, C. M. Brown, Yukari Maezato, Stephen J. Streatfield
Software Mentions: 2
Published: over 5 years ago

10.1186/1472-6807-10-34

Prediction and analysis of the modular structure of cytochrome P450 monooxygenases
Cited by: 94
Author(s): Demet Sirim, Michael Widmann, Florian Wagner, Jürgen Pleiss
Software Mentions: 2
Published: over 15 years ago

10.3389/fphar.2019.00474

Crystal Structure of the Monomeric Extracellular Domain of α9 Nicotinic Receptor Subunit in Complex With α-Conotoxin RgIA: Molecular Dynamics Insights Into RgIA Binding to α9α10 Nicotinic Receptors
Cited by: 38
Author(s): Marios Zouridakis, Athanasios Papakyriakou, Igor A. Ivanov, Igor E. Kasheverov, Victor I. Tsetlin, Socrates J. Tzartos, Petros Giastas
Software Mentions: 2
Published: about 7 years ago