10.1038/s41598-021-89556-y

ATP hydrolysis and nucleotide exit enhance maltose translocation in the MalFGK2E importer
Cited by: 1
Author(s): Bárbara Abreu, Carlos Cruz, A. Sofia F. Oliveira, Cláudio M. Soares
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-92604-2

A new non-classical fold of varroa odorant-binding proteins reveals a wide open internal cavity
Cited by: 4
Author(s): Béatrice Amigues, Jianqing Zhu, Anaïs Gaubert, Simona Arena, Giovanni Renzone, Philippe Leone, Isabella Maria Fischer, Harald Paulsen, Wolfgang Knoll, Andrea Scaloni, Alain Roussel, Christian Cambillau, Paolo Pelosi
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-018-25361-4

NADH/NADPH bi-cofactor-utilizing and thermoactive ketol-acid reductoisomerase from Sulfolobus acidocaldarius
Cited by: 12
Author(s): Chin‐Yu Chen, Tzu‐Ping Ko, Kuan-Fu Lin, Bo‐Lin Lin, Chun‐Hsiang Huang, Cheng‐Hung Chiang, Jia‐Cherng Horng
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-24457-1

Integrative annotation and knowledge discovery of kinase post-translational modifications and cancer-associated mutations through federated protein ontologies and resources
Cited by: 22
Author(s): Liang-Chin Huang, Karen Ross, Timothy R. Baffi, Harold J. Drabkin, Krys J. Kochut, Zheng Ruan, Peter D’Eustachio, Daniel McSkimming, Cecilia N. Arighi, Chuming Chen, Darren A. Natale, Cynthia L. Smith, Pascale Gaudet, Alexandra C. Newton, Cathy H. Wu, Natarajan Kannan
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-24276-4

Tau Antibody Structure Reveals a Molecular Switch Defining a Pathological Conformation of the Tau Protein
Cited by: 19
Author(s): Jessica E. Chukwu, Jan T. Pedersen, Lars Østergaard Pedersen, Christiane Volbracht, Einar M. Sigurdsson, Xiang‐Peng Kong
Software Mentions: 2
Published: about 8 years ago

10.1186/s40360-021-00511-z

Plumbagin can potently enhance the activity of xanthine oxidase: in vitro, in vivo and in silico studies
Cited by: 2
Author(s): Liang Yue, Nan Jiang, Anguo Wu, Wen-Qiao Qiu, Xin Shen, Da‐Lian Qin, Hong Li, Lin Jia, Sisi Liang, Jianming Wu
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-018-24124-5

Exploration of the effect of sequence variations located inside the binding pocket of HIV-1 and HIV-2 proteases
Cited by: 6
Author(s): Dhoha Triki, Telli Billot, Benoît Visseaux, Diane Descamps, Delphine Flatters, Anne-Claude Camproux, Leslie Regad
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-24467-z

Evolutionary convergence and divergence in archaeal chromosomal proteins and Chromo-like domains from bacteria and eukaryotes
Cited by: 19
Author(s): Gurmeet Kaur, Lakshminarayan M. Iyer, S. Subramanian, L. Aravind
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-021-93305-6

In silico designing of vaccine candidate against Clostridium difficile
Cited by: 8
Author(s): Srijita Basak, Debashrito Deb, Utkarsh Narsaria, Tamalika Kar, Filippo Castiglione, Indraneel Sanyal, Pratap D. Bade, Anurag P. Srivastava
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-018-21614-4

A multitarget approach to drug discovery inhibiting Mycobacterium tuberculosis PyrG and PanK
Cited by: 33
Author(s): Laurent R. Chiarelli, Giorgia Mori, Béatrice Silvia Orena, Marta Esposito, Thomas R. Lane, Ana Luisa de Jesus Lopes Ribeiro, Giulia Degiacomi, Júlia Zemanová, Sára Szádocka, Stanislav Huszár, Zuzana Palčeková, Marcello Manfredi, Fabio Gosetti, Joël Lelièvre, Lluís Ballell, Elena Kazakova, Vadim Makarov, Emílio Marengo, Katarı́na Mikušová, Stewart T. Cole, Giovanna Riccardi, Sean Ekins, Maria Rosalia Pasca
Software Mentions: 2
Published: over 8 years ago

10.1186/s12883-021-02215-7

Study of the collagen type VI alpha 3 (COL6A3) gene in Parkinson’s disease
Cited by: 5
Author(s): Chong‐Yao Jin, Ran Zheng, Zhi‐Hao Lin, Nai‐Jia Xue, Ying Chen, Ting Gao, Yiqun Yan, Yi Fang, Yaping Yan, Xinzhen Yin, Jun Tian, Jiali Pu, Baorong Zhang
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-018-21218-y

The Extracellular Domain of Pollen Receptor Kinase 3 is structurally similar to the SERK family of co-receptors
Cited by: 11
Author(s): Sayan Chakraborty, Haiyun Pan, Qingyu Tang, Colin Woolard, Gang Xu
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-20899-9

Supersaturation-controlled microcrystallization and visualization analysis for serial femtosecond crystallography
Cited by: 5
Author(s): Dan Bi Lee, Jong Min Kim, Jong Hyeon Seok, Ji Hye Lee, Jae Deok Jo, Ji Young Mun, Chelsie E. Conrad, Jesse Coe, Gerrett Nelson, Brenda G. Hogue, Thomas A. White, Nadia A. Zatsepin, Uwe Weierstall, Anton Barty, Henry N. Chapman, Petra Fromme, John C. H. Spence, Mi Sook Chung, Chang Hyun Oh, Kyung Hyun Kim
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-19530-8

APLP1 is endoproteolytically cleaved by γ-secretase without previous ectodomain shedding
Cited by: 22
Author(s): Linda Schauenburg, Filip Liebsch, Murat Eravci, Magnus C. Mayer, Christoph Weise, Gerhard Multhaup
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-20925-w

Conserved, unstructured regions in Pseudomonas aeruginosa PilO are important for type IVa pilus function
Cited by: 12
Author(s): Tiffany L. Leighton, Mac C.Y. Mok, M.S. Junop, P. Lynne Howell, Lori L. Burrows
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-22382-x

High-affinity ligands of the colchicine domain in tubulin based on a structure-guided design
Cited by: 35
Author(s): Oskía Bueno, Juan Estévez-Gallego, Solange Martins, A.E. Prota, Federico Gago, Asier Gómez-SanJuan, María‐José Camarasa, Isabel Barasoaín, Michel O. Steinmetz, J. Fernando Díaz, María‐Jesús Pérez‐Pérez, Sandra Liekens, Eva-Marı́a Priego
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-017-17600-x

Development of Erasin: a chromone-based STAT3 inhibitor which induces apoptosis in Erlotinib-resistant lung cancer cells
Cited by: 18
Author(s): Christian Lis, Stefan Rubner, Martin Roatsch, Angela Berg, Tyler Gilcrest, Darwin Y. Fu, Elizabeth Dong Nguyen, Annemarie Schmidt, Harald Krautscheid, Jens Meiler, Thorsten Berg
Software Mentions: 2
Published: over 8 years ago

10.1107/S2059798317016618

Molecular architectures of benzoic acid-specific type III polyketide synthases
Cited by: 11
Author(s): Charles Stewart, Kate Woods, Greg Macias, Andrew C. Allan, Roger P. Hellens, Joseph P. Noel
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-19192-6

The crystal structure of D-xylonate dehydratase reveals functional features of enzymes from the Ilv/ED dehydratase family
Cited by: 19
Author(s): Mohammad Mubinur Rahman, Martina Andberg, Anu Koivula, Juha Rouvinen, Nina Hakulinen
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-017-16421-2

A half-site multimeric enzyme achieves its cooperativity without conformational changes
Cited by: 14
Author(s): Mirella Vivoli, Jiuxia Pang, Nicholas J. Harmer
Software Mentions: 2
Published: over 8 years ago

10.18632/aging.103775

Coupled immune stratification and identification of therapeutic candidates in patients with lung adenocarcinoma
Cited by: 9
Author(s): Wenquan Hu, Guosheng Wang, Yundi Chen, Lonny Yarmus, Biao Liu, Yuan Wan
Software Mentions: 2
Published: almost 6 years ago

10.1107/S205979832001133X

Helical ensembles outperform ideal helices in molecular replacement
Cited by: 2
Author(s): Filomeno Sánchez Rodríguez, Adam J Simpkin, Owen R. Davies, Ronan Keegan, Daniel J. Rigden
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-017-16853-w

Kaempferide Prevents Titanium Particle Induced Osteolysis by Suppressing JNK Activation during Osteoclast Formation
Cited by: 31
Author(s): Zhipeng Jiao, Weifeng Xu, Jun Zheng, Pei Shen, An Qin, Sam Zhang, Yang Chen
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-19261-w

Oxidative stress via inhibition of the mitochondrial electron transport and Nrf-2-mediated anti-oxidative response regulate the cytotoxic activity of plumbagin
Cited by: 24
Author(s): Arvinder Kapur, Thomas M. Beres, Kavya Rathi, Amruta Nayak, Austin Czarnecki, Michael R. Felder, Amani A. Gillette, Spencer S. Ericksen, Emmanuel Sampene, Melissa C. Skala, Lisa Barroilhet, Manish S. Patankar
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-22883-9

Analysis of mutations in pncA reveals non-overlapping patterns among various lineages of Mycobacterium tuberculosis
Cited by: 3
Author(s): Ramani Baddam, Narender Kumar, Lothar H. Wieler, Aditya Kumar Lankapalli, Niyaz Ahmed, Sharon J. Peacock, Torsten Semmler
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-017-14337-5

Structure based biophysical characterization of the PROPPIN Atg18 shows Atg18 oligomerization upon membrane binding
Cited by: 37
Author(s): Andreea Scacioc, Carla Schmidt, Tommy Hofmann, Henning Urlaub, Karin Kühnel, Ángel Pérez-Lara
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-017-11508-2

Computational Cell Cycle Profiling of Cancer Cells for Prioritizing FDA-Approved Drugs with Repurposing Potential
Cited by: 25
Author(s): Yu‐Chen Lo, Silvia Senese, Bryan France, Ankur A. Gholkar, Robert Damoiseaux, Jorge Z. Torres
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-14953-1

Fragment-based screening identifies novel targets for inhibitors of conjugative transfer of antimicrobial resistance by plasmid pKM101
Cited by: 19
Author(s): Bastien Casu, T. Arya, Benoit Bessette, Christian Baron
Software Mentions: 2
Published: over 8 years ago

10.1002/advs.201800275

Origin, Genetic Diversity, and Evolutionary Dynamics of Novel Porcine Circovirus 3
Cited by: 85
Author(s): Gairu Li, Wanting He, Henan Zhu, Yang Bi, Ruyi Wang, Gang Xing, Cheng Zhang, Jiyong Zhou, Kwok‐Yung Yuen, George F. Gao, Shuo Su
Software Mentions: 2
Published: about 8 years ago

10.1038/srep37284

Genetic Epidemiology of Glucose-6-Phosphate Dehydrogenase Deficiency in the Arab World
Cited by: 51
Author(s): George Priya Doss C, Dima R. Alasmar, Reem I. Bux, P. Sneha, Fadheela Dad Bakhsh, Iman K. Al-Azwani, Rajaa El Bekay, Hatem Zayed
Software Mentions: 2
Published: over 9 years ago

10.1038/srep38137

Engineering of a thermostable esterase Est816 to improve its quorum-quenching activity and the underlying structural basis
Cited by: 11
Author(s): Xiwen Liu, Liping Cao, Xiaoran Fan, Yuhuan Liu, Wei Xie
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-10357-3

Integrative Approach with Electrophysiological and Theoretical Methods Reveals a New Role of S4 Positively Charged Residues in PKD2L1 Channel Voltage-Sensing
Cited by: 7
Author(s): Tomohiro Numata, Kunichika Tsumoto, Kazunori Yamada, Tetsuji Kurokawa, Shinichi Hirose, Hideki Nomura, Mitsuhiro Kawano, Yoshihisa Kurachi, Ryuji Inoue, Yasuo Mori
Software Mentions: 2
Published: almost 9 years ago

10.1038/srep33548

Distinct Roles for the N- and C-terminal Regions of M-Sec in Plasma Membrane Deformation during Tunneling Nanotube Formation
Cited by: 35
Author(s): Shunsuke Kimura, Masami Yamashita, Megumi Yamakami-Kimura, Yusuke Sato, Atsushi Yamagata, Yoshihiro Kobashigawa, Fuyuhiko Inagaki, Takako Amada, Koji Hase, Toshihiko Iwanaga, Hiroshi Ohno, Shuya Fukai
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep32626

G-actin guides p53 nuclear transport: potential contribution of monomeric actin in altered localization of mutant p53
Cited by: 26
Author(s): Taniya Saha, Deblina Guha, Argha Manna, Abir K. Panda, Jyotsna Bhat, Subhrangsu Chatterjee, Gaurisankar Sa
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep33905

Structural and histone binding ability characterization of the ARB2 domain of a histone deacetylase Hda1 from Saccharomyces cerevisiae
Cited by: 7
Author(s): Hui Shen, Yuwei Zhu, Chongyuan Wang, Hui Yan, Maikun Teng, Li Xu
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep31181

Structural insight into β-Clamp and its interaction with DNA Ligase in Helicobacter pylori
Cited by: 12
Author(s): Preeti Pandey, K.F. Tarique, Mohit Mazumder, S.A. Abdul Rehman, Nilima Kumari, S. Gourinath
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep29575

mCSM-lig: quantifying the effects of mutations on protein-small molecule affinity in genetic disease and emergence of drug resistance
Cited by: 117
Author(s): Douglas E V Pires, Tom L. Blundell, David B. Ascher
Software Mentions: 2
Published: about 10 years ago

10.1038/srep32481

On the saliva proteome of the Eastern European house mouse (Mus musculus musculus) focusing on sexual signalling and immunity
Cited by: 28
Author(s): Pavel Stopka, Barbora Kuntová, Petr Klempt, Leona Havrdová, Martina Černá, Romana Stopková
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep36782

Artificial Blood for Dogs
Cited by: 21
Author(s): Kana Yamada, Kyoko Yokomaku, Moeka Kureishi, Motofusa Akiyama, Kiyohito Kihira, Teruyuki Komatsu
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-15715-9

Crystal structure of the N-terminal domain of human CDC73 and its implications for the hyperparathyroidism-jaw tumor (HPT-JT) syndrome
Cited by: 19
Author(s): Wei Sun, Xiaolin Kuang, Yan-Ping Liu, Lu Tian, Xiaozhi Yan, Wenqing Xu
Software Mentions: 2
Published: over 8 years ago

10.1038/srep24739

Crystal Structures and Binding Dynamics of Odorant-Binding Protein 3 from two aphid species Megoura viciae and Nasonovia ribisnigri
Cited by: 51
Author(s): T. Northey, Herbert Venthur, Filomena De Biasio, F.-X. Chauviac, A.R. Cole, Karlos Antônio Lisboa Ribeiro, Gerarda Grossi, Patrizia Falabella, L. M. Field, Nicholas H. Keep, Jing‐Jiang Zhou
Software Mentions: 2
Published: about 10 years ago

10.1038/srep22127

In-situ and real-time growth observation of high-quality protein crystals under quasi-microgravity on earth
Cited by: 7
Author(s): Akira Nakamura, Jun Ohtsuka, Tatsuki Kashiwagi, Nobutaka Numoto, Noriyuki Hirota, Takahiro Ode, Hidehiko Okada, Koji Nagata, Motosuke Kiyohara, E Suzuki, Akiko Kita, Hitoshi Wada, Masaru Tanokura
Software Mentions: 2
Published: over 10 years ago

10.1038/srep28226

MtrA of the sodium ion pumping methyltransferase binds cobalamin in a unique mode
Cited by: 13
Author(s): T. Wagner, Ulrich Ermler, Seigo Shima
Software Mentions: 2
Published: about 10 years ago

10.1038/srep19742

Molecular evolution of gas cavity in [NiFeSe] hydrogenases resurrected in silico
Cited by: 2
Author(s): Takashi Tamura, Naoki Tsunekawa, Michiko Nemoto, Kenji Inagaki, Tôru Hirano, Fumitoshi Sato
Software Mentions: 2
Published: over 10 years ago

10.1107/S2059798318001365

Exploiting distant homologues for phasing through the generation of compact fragments, local fold refinement and partial solution combination
Cited by: 25
Author(s): Claudia Millán, Massimo Sammito, Airlie J. McCoy, Andrey Fabricio Ziem Nascimento, Giovanna Petrillo, Robert D. Oeffner, T. Dominguez-Gil, J.A. Hermoso, Randy J. Read, Isabel Usón
Software Mentions: 2
Published: over 8 years ago

10.1038/srep19981

Structural and functional attributes of malaria parasite diadenosine tetraphosphate hydrolase
Cited by: 12
Author(s): Amit Sharma, Manickam Yogavel
Software Mentions: 2
Published: over 10 years ago

10.1038/srep28488

Structural basis for autoinhibition and its relief of MOB1 in the Hippo pathway
Cited by: 27
Author(s): Sunyong Kim, Yuka Tachioka, Tomoyuki Mori, Toshio Hakoshima
Software Mentions: 2
Published: about 10 years ago

10.1002/prot.25223

The evolution of function within the Nudix homology clan
Cited by: 49
Author(s): John R. Srouji, Anting Xu, Annsea Park, Jack F. Kirsch, Steven E. Brenner
Software Mentions: 2
Published: over 9 years ago

10.1002/prot.25088

Potential DNA binding and nuclease functions of ComEC domains characterized<i>in silico</i>
Cited by: 22
Author(s): James Alexander Baker, Felix Šimkovic, Helen M.C. Taylor, Daniel J. Rigden
Software Mentions: 2
Published: about 10 years ago

10.1098/rsos.200844

Targeting the glycan of receptor binding domain with jacalin as a novel approach to develop a treatment against COVID-19
Cited by: 3
Author(s): Senthilnathan Rajendaran, Arunchalam Jothi, Anbazhagan Veerappan
Software Mentions: 2
Published: almost 6 years ago

10.1002/pro.3120

Structural and functional insights into thermally stable cytochrome <i>c</i>′ from a thermophile
Cited by: 14
Author(s): Sotaro Fujii, Hiroya Oki, Kazuki Kawahara, Daisuke Yamane, Masahito Yamanaka, Takahiro Maruno, Yuji Kobayashi, Misa Masanari, Satoshi Wakai, Hirofumi Nishihara, Tadayasu Ohkubo, Yoshihiro Sambongi
Software Mentions: 2
Published: over 9 years ago

10.1002/pro.3779

ConSurf‐DB: An accessible repository for the evolutionary conservation patterns of the majority of PDB proteins
Cited by: 74
Author(s): Adi Ben Chorin, Gal Masrati, Amit Kessel, Aya Narunsky, Josef Sprinzak, Shlomtzion Lahav, Haim Ashkenazy, Nir Ben‐Tal
Software Mentions: 2
Published: over 6 years ago

10.1002/pro.3879

Structural and chemical trapping of flavin‐oxide intermediates reveals substrate‐directed reaction multiplicity
Cited by: 3
Author(s): Kuan‐Hung Lin, S.Y. Lyu, Hsien‐Wei Yeh, Yi‐Shan Li, Ning‐Shian Hsu, Chun‐Man Huang, Yung‐Lin Wang, Han C. Shih, Zhe‐Chong Wang, Changshan Wu, Tsung‐Lin Li
Software Mentions: 2
Published: about 6 years ago

10.1038/srep19501

Comprehensive Structural Characterization of the Bacterial Homospermidine Synthase–an Essential Enzyme of the Polyamine Metabolism
Cited by: 17
Author(s): Sebastian Krossa, Annette Faust, Dietrich Ober, Axel J. Scheidig
Software Mentions: 2
Published: over 10 years ago

10.1038/srep29097

Glycogen synthase kinase 3β suppresses polyglutamine aggregation by inhibiting Vaccinia-related kinase 2 activity
Cited by: 12
Author(s): Eun‐Ju Lee, Hye Guk Ryu, Sangjune Kim, Dohyun Lee, Young‐Hun Jeong, Kyong‐Tai Kim
Software Mentions: 2
Published: about 10 years ago

10.1038/s41598-017-16427-w

Allosteric inhibitor remotely modulates the conformation of the orthestric pockets in mutant IDH2/R140Q
Cited by: 18
Author(s): Jiao Chen, Jie Yang, Xianqiang Sun, Zhongming Wang, Xiaolan Cheng, Wei Lü, Xueting Cai, Chunping Hu, Xu Shen, Peng Cao
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-021-95236-8

Structural insight into host plasma membrane association and assembly of HIV-1 matrix protein
Cited by: 6
Author(s): Halilibrahim Çi̇ftçi̇, Hiroshi Tateishi, Kotaro Koiwai, Ryoko Koga, Kensaku Anraku, Kazuaki Monde, Çağdaş Dağ, Ebru Destan, Büşra Yüksel, Esra Ayan, Günseli Yildirim, Merve Yigin, Fatma Betül Ertem, Alaleh Shafiei, Ömür Güven, Sabri O. Besler, Raymond G. Sierra, Chun Hong Yoon, Zhen Su, Mengling Liang, Burçin Acar, Türkan Haliloǧlu, Masami Otsuka, Fumiaki Yumoto, Mikako Fujita, Toshiya Senda, Hasan DeMi̇rci̇
Software Mentions: 2
Published: almost 5 years ago

10.1007/s13238-016-0328-8

Structural insights into the recognition of phosphorylated FUNDC1 by LC3B in mitophagy
Cited by: 92
Author(s): Mengqi Lv, Chongyuan Wang, Fudong Li, Junhui Peng, Bin Wen, Qingguo Gong, Yunyu Shi, Yajun Tang
Software Mentions: 2
Published: over 9 years ago

10.1007/s13238-015-0205-x

Crystal structures of Bbp from Staphylococcus aureus reveal the ligand binding mechanism with Fibrinogen α
Cited by: 16
Author(s): Xinyue Zhang, Meng Wu, Wei Zhuo, Junping Gu, Sensen Zhang, Jingpeng Ge, Maojun Yang
Software Mentions: 2
Published: almost 11 years ago

10.1007/s13238-017-0405-7

The binding of a monoclonal antibody to the apical region of SCARB2 blocks EV71 infection
Cited by: 17
Author(s): Xuyuan Zhang, Yang Pan, Nan Wang, Jialong Zhang, Jingyun Li, Hao Guo, Xiangyun Yin, Zihe Rao, Xiangxi Wang, Liguo Zhang
Software Mentions: 2
Published: about 9 years ago

10.1073/pnas.2010644118

Structural basis for differential recognition of phosphohistidine-containing peptides by 1-pHis and 3-pHis monoclonal antibodies
Cited by: 12
Author(s): Rajasree Kalagiri, Robyn L. Stanfield, Jill Meisenhelder, James J. La Clair, Stephen R. Fuhs, Ian A. Wilson, Tony Hunter
Software Mentions: 2
Published: over 5 years ago

10.1073/pnas.1911880116

Intrinsic elasticity of nucleosomes is encoded by histone variants and calibrated by their binding partners
Cited by: 37
Author(s): Daniël P. Melters, Mary Pitman, Tatini Rakshit, Emilios K. Dimitriadis, Minh Bui, Garegin A. Papoian, Yamini Dalal
Software Mentions: 2
Published: over 6 years ago

10.1007/s13238-014-0087-3

Molecular mechanism of SCARB2-mediated attachment and uncoating of EV71
Cited by: 83
Author(s): Minghao Dang, Xiangxi Wang, Quan Wang, Yaxin Wang, Lin Jiao, Yuna Sun, Xuemei Li, Liguo Zhang, Zhiyong Lou, Junzhi Wang, Zihe Rao
Software Mentions: 2
Published: about 12 years ago

10.1007/s13238-018-0526-7

Cryo-EM structure of an early precursor of large ribosomal subunit reveals a half-assembled intermediate
Cited by: 59
Author(s): Danni Zhou, Xing Zhu, Sanduo Zheng, Dan Tan, Meng‐Qiu Dong, Keqiong Ye
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.ppat.1009393

ADAM17 is an essential attachment factor for classical swine fever virus
Cited by: 10
Author(s): Fei Yuan, Dandan Li, Changyao Li, Yanan Zhang, Hao Song, Suhua Li, Hongkui Deng, George F. Gao, Ai Zheng
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1008652

A secreted LysM effector protects fungal hyphae through chitin-dependent homodimer polymerization
Cited by: 38
Author(s): Andrea Sánchez‐Vallet, Hui Tian, Luis Rodríguez‐Moreno, D.J. Valkenburg, Raspudin Saleem-Batcha, Stephan Wawra, Anja Kombrink, Leonie Verhage, Ronnie de Jonge, H. Peter van Esse, Alga Zuccaro, Daniel Croll, J.R. Mesters, B.P.H.J. Thomma
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.ppat.1008871

Evidence that immunization with TP0751, a bipartite Treponema pallidum lipoprotein with an intrinsically disordered region and lipocalin fold, fails to protect in the rabbit model of experimental syphilis
Cited by: 15
Author(s): Amit Luthra, Jairo M. Montezuma-Rusca, Carson J. La Vake, Morgan LeDoyt, Kristina N. Delgado, Timothy C. Davenport, Mary Fiel-Gan, Melissa J. Caimano, Justin D. Radolf, Kelly L. Hawley
Software Mentions: 2
Published: almost 6 years ago

10.1007/s00775-019-01639-4

Assembly of a heterodinuclear Mn/Fe cofactor is coupled to tyrosine–valine ether cross-link formation in the R2-like ligand-binding oxidase
Cited by: 7
Author(s): Julia J. Griese, Ramona Kositzki, Michael Haumann, Martin Högbom
Software Mentions: 2
Published: over 7 years ago

10.1016/j.jbc.2021.101001

Structural and functional analysis of gum arabic l-rhamnose-α-1,4-d-glucuronate lyase establishes a novel polysaccharide lyase family
Cited by: 3
Author(s): Tatsuya Kondo, Miyu Kichijo, Akiho Maruta, Makoto Nakaya, Shigeo Takenaka, T. Arakawa, Shinya Fushinobu, Tatsuji Sakamoto
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.ppat.1007979

The TIR-domain containing effectors BtpA and BtpB from Brucella abortus impact NAD metabolism
Cited by: 39
Author(s): Julia María Coronas-Serna, Arthur Louche, María Rodríguez-Escudero, Morgane Roussin, Paul R. C. Imbert, Isabel Rodríguez-Escudero, Laurent Terradot, Marı́a Molina, Jean‐Pierre Gorvel, Víctor J. Cid, Suzana P. Salcedo
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.ppat.1009329

Structural and functional studies of the first tripartite protein complex at the Trypanosoma brucei flagellar pocket collar
Cited by: 6
Author(s): Charlotte Isch, Paul Majneri, Nicolas Landrein, Yulia Pivovarova, Johannes Lesigang, Florian Lauruol, Derrick R. Robinson, Gang Dong, Mélanie Bonhivers
Software Mentions: 2
Published: almost 5 years ago

10.1007/s13238-018-0518-7

Solution structure of the RNA recognition domain of METTL3-METTL14 N6-methyladenosine methyltransferase
Cited by: 78
Author(s): Jinbo Huang, Dongyan Xu, Zhou Gong, Ling-Yun Qin, Shuai Yang, Yue-Ling Zhu, Xiang Wang, Delin Zhang, Tingting Zou, Ping Yin, Chun Tang
Software Mentions: 2
Published: over 8 years ago

10.1016/j.jbc.2021.100771

Structural basis of KdpD histidine kinase binding to the second messenger c-di-AMP
Cited by: 11
Author(s): Avijit Dutta, Mona Batish, Vijay Parashar
Software Mentions: 2
Published: over 5 years ago

10.1016/j.jbc.2021.100385

Insights into the dual cleavage activity of the GH16 laminarinase enzyme class on β-1,3 and β-1,4 glycosidic bonds
Cited by: 6
Author(s): M.V. Liberato, Érica T. Prates, Thiago Augusto Gonçalves, Amanda Bernardes, Nathália Vilela, Juliana Fattori, Gabriela Cristina Ematsu, Mariana Chinaglia, Emerson Rodrigo Machi Gomes, Ana Carolina Migliorini Figueira, André Damásio, Igor Polikarpov, Munir S. Skaf, Fábio M. Squina
Software Mentions: 2
Published: over 5 years ago

10.1016/j.jbc.2021.100823

Structures of the alkanesulfonate monooxygenase MsuD provide insight into C–S bond cleavage, substrate scope, and an unexpected role for the tetramer
Cited by: 5
Author(s): Jeremy Liew, Israa M. El Saudi, S. Nguyen, Denyce K. Wicht, Daniel Dowling
Software Mentions: 2
Published: about 5 years ago

10.1016/j.jbc.2021.100286

Pantoea stewartii WceF is a glycan biofilm-modifying enzyme with a bacteriophage tailspike-like fold
Cited by: 5
Author(s): Tobias Irmscher, Yvette Roske, Igor Gayk, Valentin Dunsing, Salvatore Chiantia, Udo Heinemann, Stefanie Barbirz
Software Mentions: 2
Published: over 5 years ago

10.1074/jbc.RA120.015995

Post-translational modification analysis of Saccharomyces cerevisiae histone methylation enzymes reveals phosphorylation sites of regulatory potential
Cited by: 8
Author(s): Ryan J. Separovich, Mandy W.M. Wong, Tyler Chapman, Eve Slavich, Joshua J. Hamey, Marc R. Wilkins
Software Mentions: 2
Published: over 5 years ago

10.1016/j.jbc.2021.100307

Structural basis of trehalose recognition by the mycobacterial LpqY-SugABC transporter
Cited by: 9
Author(s): Christopher M. Furze, Ignacio Delso, Enriqueta Casal, Collette S. Guy, Chloe Seddon, Chelsea M. Brown, Hadyn L. Parker, Anjana Radhakrishnan, Raúl Pacheco-Gómez, Phillip J. Stansfeld, Jesús Angulo, Alexander D. Cameron, Elizabeth Fullam
Software Mentions: 2
Published: over 5 years ago

10.1016/j.jbc.2021.100857

Oxalate decarboxylase uses electron hole hopping for catalysis
Cited by: 5
Author(s): Anthony J. Pastore, Ruijie D. Teo, Alvaro Montoya, M.J. Burg, Umar T. Twahir, Steven D. Bruner, David N. Beratan, Alexander Angerhofer
Software Mentions: 2
Published: about 5 years ago

10.1074/jbc.RA119.012372

S-Glutathionylation of human inducible Hsp70 reveals a regulatory mechanism involving the C-terminal α-helical lid
Cited by: 20
Author(s): Jie Yang, Hong Zhang, Weibin Gong, Zhenyan Liu, Hui‐Wen Wu, Wanhui Hu, Xinxin Chen, Lei Wang, Si Wu, Chang Chen, Sarah Perrett
Software Mentions: 2
Published: about 6 years ago

10.1074/jbc.RA119.010486

Moonlighting matrix metalloproteinase substrates: Enhancement of proinflammatory functions of extracellular tyrosyl-tRNA synthetase upon cleavage
Cited by: 14
Author(s): Parker G. Jobin, Nestor Solis, Yoan Machado, Peter A. Bell, K. Simran, Nam Hoon Kwon, Sung Hoon Kim, Christopher M. Overall, Georgina S. Butler
Software Mentions: 2
Published: over 6 years ago

10.1074/jbc.RA120.014924

Evolving the naturally compromised chorismate mutase from Mycobacterium tuberculosis to top performance
Cited by: 8
Author(s): Jūrate ̇ Fahrig-Kamarauskait≑, Kathrin Würth-Roderer, Helen V. Thorbjørnsrud, Susanne Mailand, Ute Krengel, Peter Kast
Software Mentions: 2
Published: over 5 years ago

10.1074/jbc.M113.491415

Conformational Plasticity and Ligand Binding of Bacterial Monoacylglycerol Lipase
Cited by: 39
Author(s): Srinivasan Rengachari, P. Aschauer, Matthias Schittmayer, Nicole Mayer, Karl Gruber, Rolf Breinbauer, Ruth Birner‐Gruenberger, Ingrid Dreveny, Monika Oberer
Software Mentions: 2
Published: almost 13 years ago

10.4172/2155-6148.1000218

Human μ Opioid Receptor Models with Evaluation of the Accuracy Using the Crystal Structure of the Murine μ Opioid Receptor
Cited by: 3
Author(s): Jose Manuel Perez‐Aguilar, Jeffery G. Saven, Renyu Liu
Software Mentions: 2
Published: over 14 years ago

10.1074/jbc.M113.534628

Crystal Structures of Leukotriene C4 Synthase in Complex with Product Analogs
Cited by: 22
Author(s): Damian Niegowski, Thea K. Kleinschmidt, Ulrika Olsson, Shabbir Ahmad, Agnes Rinaldo-Matthis, Jesper Z. Haeggström
Software Mentions: 2
Published: over 12 years ago

10.1074/jbc.RA120.016295

Antibiotic binding releases autoinhibition of the TipA multidrug-resistance transcriptional regulator
Cited by: 2
Author(s): Xuping Jiang, Linjuan Zhang, Maikun Teng, Li Xu
Software Mentions: 2
Published: over 5 years ago

10.1016/j.jbc.2021.100912

Cryo-EM reveals conformational flexibility in apo DNA polymerase ζ
Cited by: 4
Author(s): Chloe D. Truong, Theodore A. Craig, Gaofeng Cui, Maria Victoria Botuyan, Rachel A. Serkasevich, Kayi Y. Chan, Georges Mer, Po-Lin Chiu, Rajiv Kumar
Software Mentions: 2
Published: almost 5 years ago

10.1093/protein/gzx044

Novel CH1:CL interfaces that enhance correct light chain pairing in heterodimeric bispecific antibodies
Cited by: 26
Author(s): Maximilian Bönisch, Carolin Sellmann, Daniel Maresch, Claudia Halbig, Stefan Becker, Lars Toleikis, Björn Hock, Florian Rüker
Software Mentions: 2
Published: almost 9 years ago

10.1186/s40203-015-0014-1

Molecular docking studies on InhA, MabA and PanK enzymes from Mycobacterium tuberculosis of ellagic acid derivatives from Ludwigia adscendens and Trewia nudiflora
Cited by: 13
Author(s): Jamil A. Shilpi, Mohammad Tuhin Ali, Sanjib Saha, Shihab Hasan, Alexander I. Gray, Véronique Seidel
Software Mentions: 2
Published: over 10 years ago

10.1016/j.immuni.2020.02.014

Butyrophilin-2A1 Directly Binds Germline-Encoded Regions of the Vγ9Vδ2 TCR and Is Essential for Phosphoantigen Sensing
Cited by: 144
Author(s): Mohindar Murugesh Karunakaran, Carrie R. Willcox, Mahboob Salim, Daniel Paletta, Alina Suzann Fichtner, Angela Noll, Lisa Starick, Anna Nöhren, Charlotte R Begley, Katie A Berwick, Raphaël A. G. Chaleil, Vincent Pitard, Julie Déchanet‐Merville, Paul A. Bates, Brigitte Kimmel, Timothy J. Knowles, Volker Kunzmann, Lutz Walter, Mark Jeeves, Fiyaz Mohammed, Benjamin E. Willcox, Thomas Herrmann
Software Mentions: 2
Published: over 6 years ago

10.1186/s40203-016-0020-y

In silico proposition to predict cluster of B- and T-cell epitopes for the usefulness of vaccine design from invasive, virulent and membrane associated proteins of C. jejuni
Cited by: 20
Author(s): Tahirah Yasmin, Salma Akter, Mouly Debnath, Akio Ebihara, Tsutomu Nakagawa, A.H.M. Nurun Nabi
Software Mentions: 2
Published: about 10 years ago

10.1107/S1399004715016429

Structure of AadA from<i>Salmonella enterica</i>: a monomeric aminoglycoside (3′′)(9) adenyltransferase
Cited by: 14
Author(s): Yang Chen, Joakim Näsvall, Shiying Wu, Dan I. Andersson, M. Selmer
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2164-14-427

Variant surface antigens of malaria parasites: functional and evolutionary insights from comparative gene family classification and analysis
Cited by: 62
Author(s): Christian Frech, Nansheng Chen
Software Mentions: 2
Published: over 13 years ago

10.1186/s12864-019-6167-2

The anti-phytoalexin gene Bx-cathepsin W supports the survival of Bursaphelenchus xylophilus under Pinus massoniana phytoalexin stress
Cited by: 9
Author(s): Feng Wang, Qiaoli Chen, Ruizhi Zhang, Danlei Li, Yaming Ling, Ruiqing Song
Software Mentions: 2
Published: over 6 years ago

10.1111/1744-7917.12564

Comparative analysis of C‐type lectin domain proteins in the ghost moth, <i>Thitarodes xiaojinensis</i> (Lepidoptera: Hepialidae)
Cited by: 18
Author(s): Qian Meng, Ji‐Hong Zhang, Huan Zhang, Guiling Zhou, Ruoyao Ni, Yanni Zhao, Qilian Qin, Zhen Zou
Software Mentions: 2
Published: over 8 years ago

10.1038/s41436-021-01134-9

Computational prediction of protein subdomain stability in MYBPC3 enables clinical risk stratification in hypertrophic cardiomyopathy and enhances variant interpretation
Cited by: 8
Author(s): Andrea D. Thompson, Adam S. Helms, Anamika Kannan, Jaime Yob, Neal K. Lakdawala, Samuel G. Wittekind, Alexandre C. Pereira, Daniel Jacoby, Steven D. Colan, Euan A. Ashley, Sara Saberi, James S. Ware, Jodie Ingles, Christopher Semsarian, Michelle Michels, Francesco Mazzarotto, Iacopo Olivotto, Carolyn Y. Ho, Sharlene M. Day
Software Mentions: 2
Published: about 5 years ago

10.1038/s41435-020-00120-6

Evolutionary and structural analysis of SARS-CoV-2 specific evasion of host immunity
Cited by: 35
Author(s): Irfan Hussain, Nashaiman Pervaiz, Abbas Khan, Shoaib Saleem, Huma Shireen, Dong‐Qing Wei, Viviane Labrie, Yīmíng Bào, Amir Ali Abbasi
Software Mentions: 2
Published: over 5 years ago

10.1590/1678-4685-GMB-2020-0393

Structural analysis of new compound heterozygous variants in PEPD gene identified in a patient with Prolidase Deficiency diagnosed by exome sequencing
Cited by: 1
Author(s): Natália Duarte Linhares, P. Wilk, E. Wator, Meire A. Tostes, M.S. Weiss, Sérgio D.J. Pena
Software Mentions: 2
Published: over 5 years ago

10.1093/brain/awz313

RRM adjacent TARDBP mutations disrupt RNA binding and enhance TDP-43 proteinopathy
Cited by: 64
Author(s): Han-Jou Chen, Simon Topp, Ho Sang Hui, Elsa Zacco, Malvika Katarya, Conor McLoughlin, Andrew King, Bradley N. Smith, Claire Troakes, Annalisa Pastore, Christopher E. Shaw
Software Mentions: 2
Published: over 6 years ago

10.3389/fmolb.2021.658906

Predicting the Specificity- Determining Positions of Receptor Tyrosine Kinase Axl
Cited by: 5
Author(s): Tülay Karakulak, Ahmet Süreyya Rifaioğlu, João P. G. L. M. Rodrigues, Ezgi Karaca
Software Mentions: 2
Published: about 5 years ago