10.1038/s41598-018-33366-2

Increasing the distance between two monomers of topoisomerase IIβ under the action of antitumor agent 4β-sulfur-(benzimidazole) 4′-demethylepipodophyllotoxin
Cited by: 2
Author(s): Lin-Yang Sun, Liwen Zhu, Ya‐Jie Tang
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0195355

Solution scattering study of the Bacillus subtilis PgdS enzyme involved in poly-γ-glutamic acids degradation
Cited by: 1
Author(s): Jumei Zeng, Yipeng Jin, Zhongchuan Liu
Software Mentions: 2
Published: over 7 years ago

10.1016/j.jbc.2021.100286

Pantoea stewartii WceF is a glycan biofilm-modifying enzyme with a bacteriophage tailspike-like fold
Cited by: 5
Author(s): Tobias Irmscher, Yvette Roske, Igor Gayk, Valentin Dunsing, Salvatore Chiantia, Udo Heinemann, Stefanie Barbirz
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-018-33227-y

Endocrine therapy-resistant breast cancer model cells are inhibited by soybean glyceollin I through Eleanor non-coding RNA
Cited by: 19
Author(s): Takaya Yamamoto, Chiyomi Sakamoto, Hiroaki Tachiwana, Mitsuru Kumabe, Toshiro Matsui, Tadatoshi Yamashita, Masatoshi Shinagawa, Koji Ochiai, Noriko Saitoh, Mitsuyoshi Nakao
Software Mentions: 2
Published: about 7 years ago

10.1155/2020/3219840

Screening for a Potential Therapeutic Agent from the Herbal Formula in the 4th Edition of the Chinese National Guidelines for the Initial-Stage Management of COVID-19 via Molecular Docking
Cited by: 13
Author(s): Yue Sun, Angela Wei Hong Yang, Andrew Hung, George Binh Lenon
Software Mentions: 2
Published: almost 5 years ago

10.1016/j.jbc.2021.100307

Structural basis of trehalose recognition by the mycobacterial LpqY-SugABC transporter
Cited by: 9
Author(s): Christopher M. Furze, Ignacio Delso, Enriqueta Casal, Collette S. Guy, Chloe Seddon, Chelsea M. Brown, Hadyn L. Parker, Anjana Radhakrishnan, Raúl Pacheco-Gómez, Phillip J. Stansfeld, Jesús Angulo, Alexander D. Cameron, Elizabeth Fullam
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pgen.1009539

Mapping the degradation pathway of a disease-linked aspartoacylase variant
Cited by: 11
Author(s): Sarah Gersing, Yong Wang, Martin Grønbæk-Thygesen, Caroline Kampmeyer, Lene Clausen, Martin Willemoës, Claes Andréasson, Amelie Stein, Kresten Lindorff‐Larsen, Rasmus Hartmann‐Petersen
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0251459

Crystal and solution structures reveal oligomerization of individual capsid homology domains of Drosophila Arc
Cited by: 5
Author(s): Erik I. Hallin, Sigurbjörn Markússon, Lev Böttger, Andrew E. Torda, Clive R. Bramham, Petri Kursula
Software Mentions: 2
Published: over 4 years ago

10.1155/2020/2396569

Systematically Exploring the Antitumor Mechanisms of Core Chinese Herbs on Hepatocellular Carcinoma: A Computational Study
Cited by: 4
Author(s): Zhulin Wu, Li He, Lianan Wang, Lisheng Peng
Software Mentions: 2
Published: about 5 years ago

10.1016/j.jbc.2021.100321

Structural characterization of HIV-1 matrix mutants implicated in envelope incorporation
Cited by: 5
Author(s): Gunnar N. Eastep, Ruba H. Ghanam, Todd Green, Jamil S. Saad
Software Mentions: 2
Published: almost 5 years ago

10.1016/j.jbc.2021.100385

Insights into the dual cleavage activity of the GH16 laminarinase enzyme class on β-1,3 and β-1,4 glycosidic bonds
Cited by: 6
Author(s): M.V. Liberato, Érica T. Prates, Thiago Augusto Gonçalves, Amanda Bernardes, Nathália Vilela, Juliana Fattori, Gabriela Cristina Ematsu, Mariana Chinaglia, Emerson Rodrigo Machi Gomes, Ana Carolina Migliorini Figueira, André Damásio, Igor Polikarpov, Munir S. Skaf, Fábio M. Squina
Software Mentions: 2
Published: almost 5 years ago

10.1155/2020/4863015

Uncovering the Mechanism of the Effects of <i>Pien-Tze-Huang</i> on Liver Cancer Using Network Pharmacology and Molecular Docking
Cited by: 5
Author(s): Shanghui Liu, Run Wang, Yan Lou, Jia Liu
Software Mentions: 2
Published: about 5 years ago

10.1016/j.jbc.2021.100441

Molecular basis of tail-anchored integral membrane protein recognition by the cochaperone Sgt2
Cited by: 14
Author(s): Ku-Feng Lin, Michelle Y. Fry, Shyam Saladi, William M. Clemons
Software Mentions: 2
Published: almost 5 years ago

10.3390/md17050295

A New Tyrosinase Inhibitor from the Red Alga Symphyocladia latiuscula (Harvey) Yamada (Rhodomelaceae)
Cited by: 23
Author(s): Pradeep Paudel, Aditi Wagle, Su Hui Seong, Hye Jin Park, Hyun Ah Jung, Jae Sue Choi
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0107000

Crystal Structure of the Mineralocorticoid Receptor DNA Binding Domain in Complex with DNA
Cited by: 39
Author(s): William Henry Hudson, Christine Youn, Eric A. Ortlund
Software Mentions: 2
Published: about 11 years ago

10.1038/s41598-018-35559-1

A biophysical study on the mechanism of interactions of DOX or PTX with α-lactalbumin as a delivery carrier
Cited by: 17
Author(s): Behdad Delavari, Fatemeh Mamashli, Bahareh Bigdeli, Atefeh Poursoleiman, Leila Karami, Zahra Zolmajd-Haghighi, Ali Ghasemi, Samaneh Samaei-Daryan, Morteza Hosseini, Thomas Haertlé, Vladimir I. Muronetz, Øyvind Halskau, Ali Akbar Moosavi-Movahedi, Bahram Goliaei, Ali Hossein Rezayan, Ali Akbar Saboury
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.jbc.2021.100506

Structural basis for the DNA-binding activity of human ARID4B Tudor domain
Cited by: 7
Author(s): Jie Ren, Hongwei Yao, Wanhui Hu, Sarah Perrett, Weibin Gong, Yingang Feng
Software Mentions: 2
Published: almost 5 years ago

10.1093/ve/veab061

Adaptation of the endemic coronaviruses HCoV-OC43 and HCoV-229E to the human host
Cited by: 10
Author(s): Diego Forni, Rachele Cagliani, Federica Arrigoni, Martino Benvenuti, Alessandra Mozzi, Diego Forni, Mario Clerici, Luca De Gioia, Manuela Sironi
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0123996

Novel Non-Peptide Inhibitors against SmCL1 of Schistosoma mansoni: In Silico Elucidation, Implications and Evaluation via Knowledge Based Drug Discovery
Cited by: 5
Author(s): Atif Zafar, Sameena Ahmad, Asim Rizvi, Masood Ahmad
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-018-35590-2

Reconstructing the evolutionary history of F420-dependent dehydrogenases
Cited by: 17
Author(s): María Laura Mascotti, Hemant Kumar, Quốc Thái Nguyễn, Maximiliano Juri Ayub, Marco W. Fraaije
Software Mentions: 2
Published: almost 7 years ago

10.1155/2013/487158

Metabonomics Combined with UPLC-MS Chemical Profile for Discovery of Antidepressant Ingredients of a Traditional Chinese Medicines Formula, Chaihu-Shu-Gan-San
Cited by: 10
Author(s): Hongmei Jia, Zhiheng Su, Wei Long, Yuetao Liu, Xing Chang, Hongwu Zhang, Gang Ding, Yun Feng, Duan Cai, Zhong‐Mei Zou
Software Mentions: 2
Published: almost 13 years ago

10.1016/j.jbc.2021.100679

A versatile cis-prenyltransferase from Methanosarcina mazei catalyzes both C- and O-prenylations
Cited by: 2
Author(s): Miyako Okada, Hajime Unno, Koh-ichi Emi, Mayuko Matsumoto, Hisashi Hemmi
Software Mentions: 2
Published: almost 5 years ago

10.1016/j.jbc.2021.100684

Crystal structure of the catalytic domain of botulinum neurotoxin subtype A3
Cited by: 3
Author(s): Oneda Leka, Yufan Wu, Xiao Dan Li, Richard A. Kammerer
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-018-36589-5

Kinetic and thermodynamic effects of phosphorylation on p53 binding to MDM2
Cited by: 23
Author(s): Shilpa Yadahalli, José L. Neira, Christopher M. Johnson, Yaw Sing Tan, Pamela J. E. Rowling, Anasuya Chattopadhyay, Chandra Verma, Laura S. Itzhaki
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-018-36839-6

Search for efficient inhibitors of myotoxic activity induced by ophidian phospholipase A2-like proteins using functional, structural and bioinformatics approaches
Cited by: 23
Author(s): Daniela P. Marchi-Salvador, Filomena Cardoso, Antoniel Augusto Severo Gomes, Walter Luís Garrido Cavalcante, Márcia Gallacci, Marcos R.M. Fontes
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.jbc.2021.100713

The mycobacterial proteasomal ATPase Mpa forms a gapped ring to engage the 20S proteasome
Cited by: 3
Author(s): Yuanyuan Yin, Amanda Kovach, Hao-Chi Hsu, K. Heran Darwin, Huilin Li
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-018-37806-x

Creation of haemoglobin A1c direct oxidase from fructosyl peptide oxidase by combined structure-based site specific mutagenesis and random mutagenesis
Cited by: 8
Author(s): Noriyuki Ogawa, Takehide Kimura, Fumi Umehara, Yuki Katayama, Go Nagai, Keiko Suzuki, Kazuo Aisaka, Yukie Maruyama, Takafumi Itoh, Wataru Hashimoto, Kousaku Murata, Michio Ichimura
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0196642

Structure of frequency-interacting RNA helicase from Neurospora crassa reveals high flexibility in a domain critical for circadian rhythm and RNA surveillance
Cited by: 9
Author(s): Yalemi Morales, Keith J. Olsen, Jacqueline M. Bulcher, Sean Johnson
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0073962

The Human Minor Histocompatibility Antigen1 Is a RhoGAP
Cited by: 28
Author(s): Bart Jan de Kreuk, Antje Schaefer, Eloise C. Anthony, Simon Tol, Mar Fernandez‐Borja, Dirk Geerts, J. Pool, Lothar Hambach, Els Goulmy, Peter L. Hordijk
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0004656

Unusual Armadillo Fold in the Human General Vesicular Transport Factor p115
Cited by: 25
Author(s): Harald Striegl, Yvette Roske, Daniel Kümmel, Udo Heinemann
Software Mentions: 2
Published: over 16 years ago

10.1371/journal.pone.0080298

Diversification of Fungal Specific Class A Glutathione Transferases in Saprotrophic Fungi
Cited by: 37
Author(s): Yann Mathieu, P. Prosper, F. Favier, Luc Harvengt, Claude Didierjean, Jean‐Pierre Jacquot, Mélanie Morel‐Rouhier, Éric Gelhaye
Software Mentions: 2
Published: almost 12 years ago

10.26508/lsa.201800187

The crystal structure of Staufen1 in complex with a physiological RNA sheds light on substrate selectivity
Cited by: 15
Author(s): Daniela Lazzaretti, L. Bandholz-Cajamarca, Christiane Emmerich, Kristina Schaaf, Claire Basquin, Uwe Irion, Fulvia Bono
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-018-36950-8

Web-based display of protein surface and pH-dependent properties for assessing the developability of biotherapeutics
Cited by: 59
Author(s): Max Hebditch, Jim Warwicker
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.jbc.2021.100771

Structural basis of KdpD histidine kinase binding to the second messenger c-di-AMP
Cited by: 11
Author(s): Avijit Dutta, Mona Batish, Vijay Parashar
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-38680-x

Comparative genomics sheds light on the predatory lifestyle of accipitrids and owls
Cited by: 13
Author(s): Chuang Zhou, Jiazheng Jin, Changjun Peng, Qinchao Wen, Guannan Wang, Weideng Wei, Xue Jiang, Megan Price, Kai Cui, Meng Yang, Zhaobin Song, Jing Li, Xiuyue Zhang, Zhenxin Fan, Bisong Yue
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0181551

Solution NMR structure of the TRIM21 B-box2 and identification of residues involved in its interaction with the RING domain
Cited by: 8
Author(s): Amélie Wallenhammar, Madhanagopal Anandapadamanaban, Alexander Lemak, Claudio Mirabello, Patrik Lundström, Björn Wallner, Maria Sunnerhagen
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-019-38672-x

Novel mutations in the kinase domain of BCR-ABL gene causing imatinib resistance in chronic myeloid leukemia patients
Cited by: 35
Author(s): Chodimella Chandrasekhar, Palanisamy Mahesh Kumar, Potukuchi Venkata Gurunadha Krishna Sarma
Software Mentions: 2
Published: over 6 years ago

10.1016/j.jbc.2021.100823

Structures of the alkanesulfonate monooxygenase MsuD provide insight into C–S bond cleavage, substrate scope, and an unexpected role for the tetramer
Cited by: 5
Author(s): Jeremy Liew, Israa M. El Saudi, S. Nguyen, Denyce K. Wicht, Daniel Dowling
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0069833

An Activating Mutation Reveals a Second Binding Mode of the Integrin α2 I Domain to the GFOGER Motif in Collagens
Cited by: 29
Author(s): Federico Carafoli, Samir Hamaia, Dominique Bihan, Erhard Hohenester, Richard W. Farndale
Software Mentions: 2
Published: over 12 years ago

10.1038/s41598-019-39301-3

Exploration of inositol 1,4,5-trisphosphate (IP3) regulated dynamics of N-terminal domain of IP3 receptor reveals early phase molecular events during receptor activation
Cited by: 7
Author(s): Aneesh Chandran, Xavier Chee, David L. Prole, Taufiq Rahman
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-39020-9

Polyacrylamide injection matrix for serial femtosecond crystallography
Cited by: 36
Author(s): Jaehyun Park, Sehan Park, Jang Woo Kim, Gisu Park, Yunje Cho, Ki Hyun Nam
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-39484-9

Substituting the catalytic proline of 4-oxalocrotonate tautomerase with non-canonical analogues reveals a finely tuned catalytic system
Cited by: 6
Author(s): Michael Lukesch, Tea Pavkov‐Keller, Karl Gruber, Klaus Zangger, Birgit Wiltschi
Software Mentions: 2
Published: over 6 years ago

10.1016/j.jbc.2021.100857

Oxalate decarboxylase uses electron hole hopping for catalysis
Cited by: 5
Author(s): Anthony J. Pastore, Ruijie D. Teo, Alvaro Montoya, M.J. Burg, Umar T. Twahir, Steven D. Bruner, David N. Beratan, Alexander Angerhofer
Software Mentions: 2
Published: over 4 years ago

10.1016/j.jbc.2021.100912

Cryo-EM reveals conformational flexibility in apo DNA polymerase ζ
Cited by: 4
Author(s): Chloe D. Truong, Theodore A. Craig, Gaofeng Cui, Maria Victoria Botuyan, Rachel A. Serkasevich, Kayi Y. Chan, Georges Mer, Po-Lin Chiu, Rajiv Kumar
Software Mentions: 2
Published: over 4 years ago

10.1016/j.jbc.2021.100957

The endopeptidase of the maize-affecting Marafivirus type member maize rayado fino virus doubles as a deubiquitinase
Cited by: 5
Author(s): Ankoor Patel, Jessica A.M. McBride, Brian L. Mark
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0017624

Structure and Function of the First Full-Length Murein Peptide Ligase (Mpl) Cell Wall Recycling Protein
Cited by: 24
Author(s): Debanu Das, Mireille Hervé, Julie Feuerhelm, Carol L. Farr, Hsiu‐Ju Chiu, Marc‐André Elsliger, Mark W. Knuth, Heath E. Klock, Mitchell D. Miller, Adam Godzik, Scott A. Lesley, Ashley M. Deacon, Dominique Mengin‐Lecreulx, Ian A. Wilson
Software Mentions: 2
Published: over 14 years ago

10.3390/vaccines9060658

Integrated Core Proteomics, Subtractive Proteomics, and Immunoinformatics Investigation to Unveil a Potential Multi-Epitope Vaccine against Schistosomiasis
Cited by: 28
Author(s): Abdur Rehman, Sajjad Ahmad, Farah Shahid, Aqel Albutti, Ameen S. S. Alwashmi, Mohammad Aljasir, Naif Alhumeed, Muhammad Qasim, Usman Ali Ashfaq, Muhammad Tahir ul Qamar
Software Mentions: 2
Published: over 4 years ago

10.1016/j.jbc.2021.100995

Solution structures of human myeloma IgG3 antibody reveal extended Fab and Fc regions relative to the other IgG subclasses
Cited by: 8
Author(s): Valentina A. Spiteri, Margaret Goodall, James Doutch, Robert P. Rambo, Jayesh Gor, Stephen J. Perkins
Software Mentions: 2
Published: about 4 years ago

10.1016/j.jbc.2021.101001

Structural and functional analysis of gum arabic l-rhamnose-α-1,4-d-glucuronate lyase establishes a novel polysaccharide lyase family
Cited by: 3
Author(s): Tatsuya Kondo, Miyu Kichijo, Akiho Maruta, Makoto Nakaya, Shigeo Takenaka, T. Arakawa, Shinya Fushinobu, Tatsuji Sakamoto
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-019-39214-1

Deferiprone: Pan-selective Histone Lysine Demethylase Inhibition Activity and Structure Activity Relationship Study
Cited by: 20
Author(s): Verjine Khodaverdian, Subhasish Tapadar, Ian A. Macdonald, Yuan Xu, Po Y. Ho, Allison Bridges, Pragya Rajpurohit, Bhakti A. Sanghani, Yuhong Fan, Muthusamy Thangaraju, Nathaniel A. Hathaway, Adegboyega K. Oyelere
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-41309-8

Specific modification at the C-terminal lysine residue of the green fluorescent protein variant, GFPuv, expressed in Escherichia coli
Cited by: 7
Author(s): Takahiro Nakatani, Norio Yasui, Issei Tamura, Atsuko Yamashita
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-41272-4

Conjugates of methylene blue with γ-carboline derivatives as new multifunctional agents for the treatment of neurodegenerative diseases
Cited by: 22
Author(s): С. О. Бачурин, Галина Ф. Махаева, E. F. Shevtsova, Natalia P. Boltneva, N. V. Kovaleva, Sofya V. Lushchekina, Е. В. Рудакова, L. G. Dubova, Daria V. Vinogradova, В. Б. Соколов, А. Yu. Aksinenko, Владимир Петрович Фисенко, Rudy J. Richardson, Gjumrakch Aliev
Software Mentions: 2
Published: over 6 years ago

10.1016/j.jbc.2021.101031

Epistatic interactions promote persistence of NS3-Q80K in HCV infection by compensating for protein folding instability
Cited by: 1
Author(s): G. Dultz, Sanjay Kumar Srikakulam, Michael Konetschnik, Tetsuro Shimakami, Nadezhda T. Doncheva, Julia Dietz, Christoph Sarrazin, Ricardo M. Biondi, Stefan Zeuzem, Robert Tampé, Olga Kalinina, Christoph Welsch
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-019-41300-3

An engineered GH1 β-glucosidase displays enhanced glucose tolerance and increased sugar release from lignocellulosic materials
Cited by: 33
Author(s): Clelton A. Santos, M.A.B. Morais, Oliver M. Terrett, Jan J. Lyczakowski, L.M. Zanphorlin, Jaire A. Ferreira-Filho, C.C.C. Tonoli, Mário Tyago Murakami, Paul Dupree, Anete Pereira de Souza
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-41582-7

Highly Mutable Linker Regions Regulate HIV-1 Rev Function and Stability
Cited by: 12
Author(s): Bhargavi Jayaraman, Jason D Fernandes, Sen Yang, Cynthia L. Smith, Alan D. Frankel
Software Mentions: 2
Published: over 6 years ago

10.1016/j.jbc.2021.101043

Catalytic mechanism of ancestral L-lysine oxidase assigned by sequence data mining
Cited by: 8
Author(s): Saiko Sugiura, Shogo Nakano, Masazumi Niwa, Fumihito Hasebe, Daisuke Matsui, Sohei Ito
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-019-42104-1

Identification of a Novel Anti-cancer Protein, FIP-bbo, from Botryobasidium botryosum and Protein Structure Analysis using Molecular Dynamic Simulation
Cited by: 9
Author(s): Ying Wang, Ying Gao, Rui Bai, Hong Yu Chen, Ying Wu, Jun Jun Shang, Da Peng Bao
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0098634

Insights into Alpha-Hemolysin (Hla) Evolution and Expression among Staphylococcus aureus Clones with Hospital and Community Origin
Cited by: 31
Author(s): Ana Tavares, Julius Nielsen, Kasper Boye, Susanne Mie Rohde, Ana Cristina Paulo, Henrik Westh, Kristian Schønning, Hermı́nia de Lencastre, Maria Miragaia
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-019-42635-7

A rare autism-associated MINT2/APBA2 mutation disrupts neurexin trafficking and synaptic function
Cited by: 9
Author(s): Amy Lin, Shawna Henry, Carsten Reißner, Christian Neupert, Connor Kenny, Markus Missler, Uwe Beffert, Angela Ho
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0140984

Improving the pH-stability of Versatile Peroxidase by Comparative Structural Analysis with a Naturally-Stable Manganese Peroxidase
Cited by: 40
Author(s): Verónica Sáez-Jiménez, Elena Fernández‐Fueyo, F.J. Medrano, Antonio Romero, Ángel T. Martínez, Francisco J. Ruíz-Dueñas
Software Mentions: 2
Published: about 10 years ago

10.1038/s41598-019-43485-z

Nylon mesh-based sample holder for fixed-target serial femtosecond crystallography
Cited by: 47
Author(s): Donghyeon Lee, Sangwon Baek, Jaehyun Park, Keondo Lee, Jang Woo Kim, Sang Jae Lee, Wan Kyun Chung, Jong‐Lam Lee, Yunje Cho, Ki Hyun Nam
Software Mentions: 2
Published: over 6 years ago

10.1155/2020/1062325

Pharmacological Network Reveals the Active Mechanism of Qi-Replenishing, Spleen-Strengthening, Phlegm-Dispelling, and Blood-Nourishing Fufang on Coronary Heart Disease
Cited by: 2
Author(s): Fan Zhang, Yue Liu, Sicheng Zheng, Boyi Dang, Jianan Wang, Zhe Zhang
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0242383

The crystal structure of mouse IRG1 suggests that cis-aconitate decarboxylase has an open and closed conformation
Cited by: 4
Author(s): Hye Lin Chun, So Yeon Lee, Ki-Hwa Kim, Chang Sup Lee, Tae‐Jin Oh, Hyun Ho Park
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-44785-0

First crystal structure of an endo-levanase – the BT1760 from a human gut commensal Bacteroides thetaiotaomicron
Cited by: 16
Author(s): Karin Ernits, Priit Eek, T. Lukk, Triinu Visnapuu, Tiina Alamäe
Software Mentions: 2
Published: over 6 years ago

10.1155/2020/7151634

Deciphering the Molecular Targets and Mechanisms of HGWD in the Treatment of Rheumatoid Arthritis via Network Pharmacology and Molecular Docking
Cited by: 21
Author(s): Wei Liu, Yihua Fan, Chunying Tian, Yue Jin, Shaopeng Du, Ping Zeng, Aihua Wang
Software Mentions: 2
Published: about 5 years ago

10.1155/2020/9145626

Methanolic Bark Extract of <i>Abroma augusta</i> (L.) Induces Apoptosis in EAC Cells through Altered Expression of Apoptosis Regulatory Genes
Cited by: 7
Author(s): Masum Miah, Ajmeri Sultana Shimu, Shafi Mahmud, Farjana-Binta Omar, Ratna Khatun, Sumon Chandro Mohanto, Kazi Md. Faisal Hoque, Abu Reza
Software Mentions: 2
Published: over 5 years ago

10.1007/s00775-019-01639-4

Assembly of a heterodinuclear Mn/Fe cofactor is coupled to tyrosine–valine ether cross-link formation in the R2-like ligand-binding oxidase
Cited by: 7
Author(s): Julia J. Griese, Ramona Kositzki, Michael Haumann, Martin Högbom
Software Mentions: 2
Published: almost 7 years ago

10.3390/vaccines9080818

Towards an Ensemble Vaccine against the Pegivirus Using Computational Modelling Approaches and Its Validation through In Silico Cloning and Immune Simulation
Cited by: 8
Author(s): Bowen Zheng, Muhammad Suleman, Zonara Zafar, Syed Shujait Ali, Syed Nouman Nasir, Namra, Zahid Hussain, Muhammad Waseem, Abbas Khan, Fakhrul Hassan, Yanjing Wang, Dong‐Qing Wei
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0097015

Structural Studies of an Anti-Inflammatory Lectin from Canavalia boliviana Seeds in Complex with Dimannosides
Cited by: 22
Author(s): G.A. Bezerra, Roland Viertlmayr, Tales Rocha de Moura, P. Delatorre, B.A.M. Rocha, Kyria S. Nascimento, Jozi Godoy Figueiredo, Ingrid Gonçalves Bezerra, C.S. Teixeira, Rafael Conceição Simões, Celso Shiniti Nagano, Nylane Maria Nunes de Alencar, Karl Gruber, Benildo S. Cavada
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-021-88920-2

Structural and mechanistic insights into the bifunctional HISN2 enzyme catalyzing the second and third steps of histidine biosynthesis in plants
Cited by: 4
Author(s): Wojciech Witek, Joanna Śliwiak, M. Ruszkowski
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-88826-z

Phosphorylation of the WH2 domain in yeast Las17/WASP regulates G-actin binding and protein function during endocytosis
Cited by: 1
Author(s): Joe Tyler, Iwona I. Smaczynska-de Rooij, Liemya Abugharsa, Jack Palmer, L. P. Hancock, Ellen G. Allwood, Kathryn R. Ayscough
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.ppat.1007979

The TIR-domain containing effectors BtpA and BtpB from Brucella abortus impact NAD metabolism
Cited by: 39
Author(s): Julia María Coronas-Serna, Arthur Louche, María Rodríguez-Escudero, Morgane Roussin, Paul R. C. Imbert, Isabel Rodríguez-Escudero, Laurent Terradot, Marı́a Molina, Jean‐Pierre Gorvel, Víctor J. Cid, Suzana P. Salcedo
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0041710

Predicting HLA Class I Non-Permissive Amino Acid Residues Substitutions
Cited by: 21
Author(s): T.A. Binkowski, Susana R. Marino, A. Joachimiak
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.ppat.1008652

A secreted LysM effector protects fungal hyphae through chitin-dependent homodimer polymerization
Cited by: 38
Author(s): Andrea Sánchez‐Vallet, Hui Tian, Luis Rodríguez‐Moreno, D.J. Valkenburg, Raspudin Saleem-Batcha, Stephan Wawra, Anja Kombrink, Leonie Verhage, Ronnie de Jonge, H. Peter van Esse, Alga Zuccaro, Daniel Croll, J.R. Mesters, B.P.H.J. Thomma
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-89450-7

Structural genomics approach to investigate deleterious impact of nsSNPs in conserved telomere maintenance component 1
Cited by: 17
Author(s): Arunabh Choudhury, Taj Mohammad, Nikhil Samarth, Afzal Hussain, Tabish Rehman, Asimul Islam, Mohamed F. Alajmi, Shailza Singh, Md. Imtaiyaz Hassan
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.ppat.1008650

A Toxoplasma gondii patatin-like phospholipase contributes to host cell invasion
Cited by: 10
Author(s): Sarah K. Wilson, Justine Heckendorn, Bruno Martorelli Di Genova, Lindsey L. Koch, Peggy J. Rooney, Naomi S. Morrissette, Maryse Lebrun, Laura J. Knoll
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-89556-y

ATP hydrolysis and nucleotide exit enhance maltose translocation in the MalFGK2E importer
Cited by: 1
Author(s): Bárbara Abreu, Carlos Cruz, A. Sofia F. Oliveira, Cláudio M. Soares
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-91069-7

Combination of consensus and ensemble docking strategies for the discovery of human dihydroorotate dehydrogenase inhibitors
Cited by: 8
Author(s): Garri Chilingaryan, Narek Abelyan, A. A. Sargsyan, Karen Nazaryan, Andre Serobian, Hovakim Zakaryan
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-90845-9

Inhibition of MMP2-PEX by a novel ester of dihydroxy cinnamic and linoleic acid from the seagrass Cymodocea serrulata
Cited by: 1
Author(s): V S Christina, R. Lakshmi Sundaram, V Sivamurugan, Dinesh Kumar, Chinambedu Dhandapani Mohanapriya, V.L. Shailaja, S P Thyagarajan, C. George Priya Doss, K. Mary Elizabeth Gnanambal
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-91090-w

An alternative domain-swapped structure of the Pyrococcus horikoshii PolII mini-intein
Cited by: 1
Author(s): Jennie E. Williams, Mario V. Jaramillo, Li Zhong, Jing Zhao, Qianqian Wang, Hongmin Li, Kenneth V. Mills
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0221915

First eight residues of apolipoprotein A-I mediate the C-terminus control of helical bundle unfolding and its lipidation
Cited by: 6
Author(s): Gregory Brubaker, Shuhui Wang Lorkowski, Kailash Gulshan, Stanley L. Hazen, Valentin Gogonea, Jonathan Smith
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.ppat.1008794

Evolution-guided mutagenesis of the cytoplasmic incompatibility proteins: Identifying CifA’s complex functional repertoire and new essential regions in CifB
Cited by: 21
Author(s): J. Dylan Shropshire, Mahip Kalra, Seth R. Bordenstein
Software Mentions: 2
Published: about 5 years ago

10.3390/vaccines9091012

New 1,2,3-Triazole Scaffold Schiff Bases as Potential Anti-COVID-19: Design, Synthesis, DFT-Molecular Docking, and Cytotoxicity Aspects
Cited by: 21
Author(s): Musa A. Said, Daoud J O Khan, Fawzia Faleh Al-blewi, Nadia S. Al-Kaff, Adeeb Al-Sheikh Ali, Nadjet Rezki, Mohamed Reda Aouad, Mohamed Hagar
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-021-90287-3

Molecular insight into isoform specific inhibition of PI3K-α and PKC-η with dietary agents through an ensemble pharmacophore and docking studies
Cited by: 4
Author(s): Baki Vijaya Bhaskar, Aluru Rammohan, Tirumalasetty Munichandra Babu, Gui Yu Zheng, Weibin Chen, Wudayagiri Rajendra, Grigory V. Zyryanov, Wei Gu
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-91765-4

BING, a novel antimicrobial peptide isolated from Japanese medaka plasma, targets bacterial envelope stress response by suppressing cpxR expression
Cited by: 4
Author(s): Mingdong Dong, Shu Hin Kwok, Joseph L. Humble, Yimin Liang, Sze Wing Tang, Kin Hung Tang, Man Kit Tse, Josh Haipeng Lei, R. Rajkumar, Mohamad Koohi‐Moghadam, Doris Wai Ting Au, Hongyan Sun, Yun Wah Lam
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.ppat.1008871

Evidence that immunization with TP0751, a bipartite Treponema pallidum lipoprotein with an intrinsically disordered region and lipocalin fold, fails to protect in the rabbit model of experimental syphilis
Cited by: 15
Author(s): Amit Luthra, Jairo M. Montezuma-Rusca, Carson J. La Vake, Morgan LeDoyt, Kristina N. Delgado, Timothy C. Davenport, Mary Fiel-Gan, Melissa J. Caimano, Justin D. Radolf, Kelly L. Hawley
Software Mentions: 2
Published: about 5 years ago

10.3390/vaccines9090986

Multiepitope Proteins for the Differential Detection of IgG Antibodies against RBD of the Spike Protein and Non-RBD Regions of SARS-CoV-2
Cited by: 7
Author(s): Larissa Rodrigues Gomes, Andressa da Matta Durans, Paloma Napoleão-Pêgo, Jessica A. Waterman, Mariana S. Freitas, Nathalia Beatriz Ramos de Sá, Lilian V. Pereira, Jéssica S. Furtado, Romário G. Aquino, Mario C. R. Machado, Natalia Fintelman‐Rodrigues, Thiago Moreno L. Souza, Carlos Médicis Morel, David William Provance, Salvatore Giovanni De-Simone
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-021-92687-x

Polyimide mesh-based sample holder with irregular crystal mounting holes for fixed-target serial crystallography
Cited by: 15
Author(s): Ki Hyun Nam, Jihan Kim, Yunje Cho
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-92604-2

A new non-classical fold of varroa odorant-binding proteins reveals a wide open internal cavity
Cited by: 4
Author(s): Béatrice Amigues, Jianqing Zhu, Anaïs Gaubert, Simona Arena, Giovanni Renzone, Philippe Leone, Isabella Maria Fischer, Harald Paulsen, Wolfgang Knoll, Andrea Scaloni, Alain Roussel, Christian Cambillau, Paolo Pelosi
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0052066

Structural and Functional Insights into (S)-Ureidoglycolate Dehydrogenase, a Metabolic Branch Point Enzyme in Nitrogen Utilization
Cited by: 4
Author(s): Myungil Kim, Inchul Shin, Suhee Cho, Jee Hyun Lee, Sangkee Rhee
Software Mentions: 2
Published: almost 13 years ago

10.3390/life11040346

Behavior of Chemokine Receptor 6 (CXCR6) in Complex with CXCL16 Soluble form Chemokine by Molecular Dynamic Simulations: General Protein‒Ligand Interaction Model and 3D-QSAR Studies of Synthetic Antagonists
Cited by: 4
Author(s): Giovanny Aguilera-Durán, Antonio Romo-Mancillas
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0021507

New Structural and Functional Contexts of the Dx[DN]xDG Linear Motif: Insights into Evolution of Calcium-Binding Proteins
Cited by: 55
Author(s): Daniel J. Rigden, Duncan David Woodhead, Prudence W. H. Wong, Michael Y. Galperin
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0122512

Crystal Structure of a Two-Subunit TrkA Octameric Gating Ring Assembly
Cited by: 2
Author(s): Marc C. Deller, Hope A. Johnson, Mitchell D. Miller, Glen Spraggon, Marc‐André Elsliger, Ian A. Wilson, Scott A. Lesley
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-021-93305-6

In silico designing of vaccine candidate against Clostridium difficile
Cited by: 8
Author(s): Srijita Basak, Debashrito Deb, Utkarsh Narsaria, Tamalika Kar, Filippo Castiglione, Indraneel Sanyal, Pratap D. Bade, Anurag P. Srivastava
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2105-15-319

Modeling T cell receptor recognition of CD1-lipid and MR1-metabolite complexes
Cited by: 6
Author(s): Brian G. Pierce, Thom Vreven, Zhiping Weng
Software Mentions: 2
Published: about 11 years ago

10.1107/S2059798320005355

Structural analysis of the PATZ1 BTB domain homodimer
Cited by: 4
Author(s): Sofia Piepoli, Aaron Alt, Canan Atılgan, Erika J. Mancini, Batu Erman
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-018-5244-2

Do environmentally induced DNA variations mediate adaptation in Aspergillus flavus exposed to chromium stress in tannery sludge?
Cited by: 9
Author(s): Akanksha Jaiswar, Deepti Varshney, Alok Adholeya, Priyanka Prasad
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12864-018-4571-7

Identification, characterization and gene expression analyses of important flowering genes related to photoperiodic pathway in bamboo
Cited by: 28
Author(s): Shyamali Dutta, Protha Biswas, Sukanya Chakraborty, Devrani Mitra, Amita Pal, Mita Das
Software Mentions: 2
Published: over 7 years ago

10.1107/S2053230X14003355

A range of C∊3–C∊4 interdomain angles in IgE Fc accommodate binding to its receptor CD23
Cited by: 13
Author(s): B. Dhaliwal, M.O.Y. Pang, Daopeng Yuan, Andrew J. Beavil, Brian J. Sutton
Software Mentions: 2
Published: over 11 years ago

10.1074/jbc.M115.672790

Agonistic Human Antibodies Binding to Lecithin-Cholesterol Acyltransferase Modulate High Density Lipoprotein Metabolism
Cited by: 29
Author(s): Ruwanthi N. Gunawardane, Preston Fordstrom, Derek E. Piper, Stephanie Masterman, Sophia Siu, Dongming Liu, M Ichael S. Brown, Mei Lü, Jie Tang, Richard Zhang, Janet Cheng, Andrew J. Gates, David Meininger, Janice Chan, Tim Carlson, Nigel Walker, Margrit Schwarz, John Delaney, Mingyue Zhou
Software Mentions: 2
Published: almost 10 years ago