10.3389/fnmol.2018.00330

Molecular Details of Retinal Guanylyl Cyclase 1/GCAP-2 Interaction
Cited by: 9
Author(s): Anne Rehkamp, Dirk Tänzler, Claudio Iacobucci, Ralph Golbik, Christian Ihling, Andrea Sinz
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0216979

Crystal structures of Moorella thermoacetica cyanuric acid hydrolase reveal conformational flexibility and asymmetry important for catalysis
Cited by: 2
Author(s): Ke Shi, Chong-Min Kyung, Kelly G. Aukema, Thomas Lee, Asim K. Bera, Jennifer L. Seffernick, Lawrence P. Wackett, Hideki Aihara
Software Mentions: 2
Published: about 7 years ago

10.1002/prot.25088

Potential DNA binding and nuclease functions of ComEC domains characterized<i>in silico</i>
Cited by: 22
Author(s): James Alexander Baker, Felix Šimkovic, Helen M.C. Taylor, Daniel J. Rigden
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0215555

Heavy-atom labeling of RNA by PLOR for de novo crystallographic phasing
Cited by: 6
Author(s): Jason R. Stagno, Ping Yü, Marcin Dyba, Yun‐Xing Wang, Yu Liu
Software Mentions: 2
Published: about 7 years ago

10.3390/cells10051205

Regulation of the Phosphoinositide Code by Phosphorylation of Membrane Readers
Cited by: 6
Author(s): Troy A. Kervin, Michael Overduin
Software Mentions: 2
Published: about 5 years ago

10.15252/msb.20177902

A unified approach for quantifying and interpreting <scp>DNA</scp> shape readout by transcription factors
Cited by: 31
Author(s): H. Tomas Rube, Chaitanya Rastogi, Judith F. Kribelbauer, Harmen J. Bussemaker
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0022337

The Crystal Structure of the Human Co-Chaperone P58IPK
Cited by: 19
Author(s): Maria Svärd, Ekaterina Biterova, Jean-Marie Bourhis, Jodie E. Guy
Software Mentions: 2
Published: almost 15 years ago

10.1002/prot.26018

<scp>PDB‐tools</scp> web: A user‐friendly interface for the manipulation of <scp>PDB</scp> files
Cited by: 12
Author(s): Brian Jiménez‐García, João M.C. Teixeira, Mikaël Trellet, João P. G. L. M. Rodrigues, Alexandre M. J. J. Bonvin
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms16059354

A Moonlighting Human Protein Is Involved in Mitochondrial Import of tRNA
Cited by: 19
Author(s): Maria V. Baleva, Gowher Ali, Piotr Kamenski, Ivan Tarassov, Nina Entelis, Benoı̂t Masquida
Software Mentions: 2
Published: about 11 years ago

10.3390/ijms16059654

Structural Basis for Carbapenem-Hydrolyzing Mechanisms of Carbapenemases Conferring Antibiotic Resistance
Cited by: 121
Author(s): Jeong Ho Jeon, Jung Hun Lee, Jae Jin Lee, Kwang Seung Park, Asad Mustafa Karim, Chang Ro Lee, Byeong Chul Jeong, Sangeun Lee
Software Mentions: 2
Published: about 11 years ago

10.1002/prot.25223

The evolution of function within the Nudix homology clan
Cited by: 49
Author(s): John R. Srouji, Anting Xu, Annsea Park, Jack F. Kirsch, Steven E. Brenner
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0019510

Insight into the Interaction of Metal Ions with TroA from Streptococcus suis
Cited by: 52
Author(s): Beiwen Zheng, Qiangmin Zhang, Jia Gao, Haitao Han, Ming Li, Jing-Ren Zhang, Jianxun Qi, Jinghua Yan, George F. Gao
Software Mentions: 2
Published: about 15 years ago

10.1371/journal.pone.0052642

Specificity and Versatility of Substrate Binding Sites in Four Catalytic Domains of Human N-Terminal Acetyltransferases
Cited by: 6
Author(s): Cédric Grauffel, Angèle Abboud, Glen Liszczak, Ronen Marmorstein, Thomas Arnesen, Nathalie Reuter
Software Mentions: 2
Published: over 13 years ago

10.3390/cells8101146

Tubulin-Dependent Transport of Connexin-36 Potentiates the Size and Strength of Electrical Synapses
Cited by: 12
Author(s): Cherie Alicia Brown, Cristiane del Corsso, Christiane Zoidl, Logan W. Donaldson, David C. Spray, Georg Zoidl
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms17040446

Structure of the PLP-Form of the Human Kynurenine Aminotransferase II in a Novel Spacegroup at 1.83 Å Resolution
Cited by: 13
Author(s): Alireza Nematollahi, Guorong Sun, S.J. Harrop, Jane R. Hanrahan, W. Bret Church
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0151412

Monitoring Solution Structures of Peroxisome Proliferator-Activated Receptor β/δ upon Ligand Binding
Cited by: 13
Author(s): Rico Schwarz, Dirk Tänzler, Christian Ihling, Andrea Sinz
Software Mentions: 2
Published: over 10 years ago

10.3390/cells10051052

Remdesivir and Ledipasvir among the FDA-Approved Antiviral Drugs Have Potential to Inhibit SARS-CoV-2 Replication
Cited by: 24
Author(s): Rameez Hassan Pirzada, Muhammad Haseeb, Maria Batool, MoonSuk Kim, Sangdun Choi
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0016659

HIV-1 Nef Protein Structures Associated with Brain Infection and Dementia Pathogenesis
Cited by: 30
Author(s): Susanna L. Lamers, Art F. Y. Poon, Michael S. McGrath
Software Mentions: 2
Published: over 15 years ago

10.1098/rsos.200844

Targeting the glycan of receptor binding domain with jacalin as a novel approach to develop a treatment against COVID-19
Cited by: 3
Author(s): Senthilnathan Rajendaran, Arunchalam Jothi, Anbazhagan Veerappan
Software Mentions: 2
Published: almost 6 years ago

10.1186/1743-422X-10-269

Chikungunya virus capsid protein contains nuclear import and export signals
Cited by: 37
Author(s): Saijo Thomas, Jagdish Rai, Lijo John, Stephan Schaefer, Brigitte M. Pützer, Ottmar Herchenröder
Software Mentions: 2
Published: almost 13 years ago

10.3390/v11060504

Transcriptional Control and mRNA Capping by the GDP Polyribonucleotidyltransferase Domain of the Rabies Virus Large Protein
Cited by: 15
Author(s): Tomoaki Ogino, Todd Green
Software Mentions: 2
Published: about 7 years ago

10.3390/ijms17122116

Discovery of a New Class of Cathepsin K Inhibitors in Rhizoma Drynariae as Potential Candidates for the Treatment of Osteoporosis
Cited by: 17
Author(s): Zuo-Cheng Qiu, Xiaoli Dong, Yi Dai, Gao Keng Xiao, Xin Luan Wang, Ka-Chun Wong, Man Sau Wong, Xin Yao
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0018413

Co-Crystal Structures of PKG Iβ (92–227) with cGMP and cAMP Reveal the Molecular Details of Cyclic-Nucleotide Binding
Cited by: 51
Author(s): Jeong Joo Kim, Darren E. Casteel, Gary B. Huang, Tai Hun Kwon, Ronnie Kuo Ren, Peter H. Zwart, Jeffrey J. Headd, Nicholas G. Brown, Dar Chone Chow, Timothy Palzkill, Choel Kim
Software Mentions: 2
Published: about 15 years ago

10.3390/cells9030746

Elevated PDK1 Expression Drives PI3K/AKT/MTOR Signaling Promotes Radiation-Resistant and Dedifferentiated Phenotype of Hepatocellular Carcinoma
Cited by: 76
Author(s): Oluwaseun Adebayo Bamodu, Hang Chang, Jiann Ruey Ong, Wei Hwa Lee, Chi Tai Yeh, Jo Ting Tsai
Software Mentions: 2
Published: over 6 years ago

10.26508/lsa.202000776

Structure of human Dispatched-1 provides insights into Hedgehog ligand biogenesis
Cited by: 22
Author(s): Hongwen Chen, Yang Liu, Xiaochun Li
Software Mentions: 2
Published: almost 6 years ago

10.15252/msb.20188371

Deep scanning lysine metabolism in <i>Escherichia coli</i>
Cited by: 31
Author(s): Marcelo C. Bassalo, Andrew D. Garst, Alaksh Choudhury, William C Grau, Eun‐Suok Oh, Eileen Spindler, Tanya Warnecke Lipscomb, Ryan T. Gill
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0201556

Deciphering the targets of retroviral protease inhibitors in Plasmodium berghei
Cited by: 16
Author(s): Noah Machuki Onchieku, Reagan M. Mogire, Loise Ndung’u, Peter Mwitari, Francis Kimani, Damaris Matoke-Muhia, Daniel Kiboi, Gabriel Magoma
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0212339

Molecular features of steroid-binding antidins and their use for assaying serum progesterone
Cited by: 2
Author(s): Nitin Agrawal, Soili I. Lehtonen, Meri Uusi-Mäkelä, Purvi Jain, Sari Viitala, Juha Määttä, Niklas Kähkönen, Latifeh Azizi, Tiina A. Riihimäki, Markku S. Kulomaa, Mark S. Johnson, Vesa P. Hytönen, Tomi T. Airenne
Software Mentions: 2
Published: over 7 years ago

10.3390/life10070109

Optimization of Molecular Dynamics Simulations of c-MYC1-88—An Intrinsically Disordered System
Cited by: 8
Author(s): Sandra S. Sullivan, Robert O. J. Weinzierl
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms18071336

Quinolin-6-Yloxyacetamides Are Microtubule Destabilizing Agents That Bind to the Colchicine Site of Tubulin
Cited by: 9
Author(s): Ashwani Sharma, Gonzalo Sáez-Calvo, Natacha Olieric, Francisco de Asís Balaguer, Isabel Barasoaín, Clemens Lamberth, J. Fernando Díaz, Michel O. Steinmetz
Software Mentions: 2
Published: about 9 years ago

10.1038/srep39024

Comparative Proteomics Reveals that Phosphorylation of β Carbonic Anhydrase 1 Might be Important for Adaptation to Drought Stress in Brassica napus
Cited by: 31
Author(s): Limin Wang, Xiang Jin, Qingbin Li, Xuchu Wang, Zaiyun Li, Xiaoming Wu
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0024227

Get Phases from Arsenic Anomalous Scattering: de novo SAD Phasing of Two Protein Structures Crystallized in Cacodylate Buffer
Cited by: 22
Author(s): Xiang Liu, Heng Zhang, Wang Xiao-jun, Lanfen Li, Xiao‐Dong Su
Software Mentions: 2
Published: almost 15 years ago

10.1038/srep40254

Crystal Structure of StnA for the Biosynthesis of Antitumor Drug Streptonigrin Reveals a Unique Substrate Binding Mode
Cited by: 5
Author(s): Tianle Qian, Jing Wo, Yan Zhang, Quanwei Song, Guoqiang Feng, Ray Luo, Shuangjin Lin, Geng Wu, Haifeng Chen
Software Mentions: 2
Published: over 9 years ago

10.1002/cctc.202100110

A Structural View on the Stereospecificity of Plant Borneol‐Type Dehydrogenases
Cited by: 10
Author(s): Andrea M Chánique, Nicole Dimos, Ivana Drienovská, Elia Calderini, Mónica P. Pantín, Carl P. O. Helmer, Michaël Hofer, Volker Sieber, Loreto P. Parra, Bernhard Loll, Robert Kourist
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.606820

Interpreting Sequence Variation in PDAC-Predisposing Genes Using a Multi-Tier Annotation Approach Performed at the Gene, Patient, and Cohort Level
Cited by: 3
Author(s): Michael T. Zimmermann, Angela Mathison, Tim Stodola, Douglas B. Evans, Jenica Abrudan, Wendy Demos, Michael Tschannen, Mohammed Aldakkak, Jennifer L. Geurts, Gwen Lomberk, Susan Tsai, Raúl Urrutia
Software Mentions: 2
Published: over 5 years ago

10.1016/j.matbio.2016.06.006

Crystallographic analysis of the laminin β2 short arm reveals how the LF domain is inserted into a regular array of LE domains
Cited by: 8
Author(s): David Pulido, Deg Briggs, Jinwen Hua, Erhard Hohenester
Software Mentions: 2
Published: over 9 years ago

10.1038/srep41487

Identification of a novel selective PPARγ ligand with a unique binding mode and improved therapeutic profile in vitro
Cited by: 15
Author(s): Wei Yi, Jingjing Shi, Guanguan Zhao, Xuemei Zhou, Kelly Suino-Powell, Karsten Melcher, H. Eric Xu
Software Mentions: 2
Published: over 9 years ago

10.1186/s12934-020-01500-3

Improved production of germacrene A, a direct precursor of ß-elemene, in engineered Saccharomyces cerevisiae by expressing a cyanobacterial germacrene A synthase
Cited by: 18
Author(s): Weixin Zhang, Junqi Guo, Zheng Wang, Yanwei Li, Xiangfeng Meng, Yu Shen, Weifeng Liu
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms19010224

Genome-Wide Identification, Expression, and Functional Analysis of the Alkaline/Neutral Invertase Gene Family in Pepper
Cited by: 23
Author(s): Long-Bin Shen, Yuan Yao, He Huang, Yuling Qin, Ziji Liu, Liu Weixia, Zhiqiang Qi, Yang Liu, Zhen-Mu Cao, Yan Yang
Software Mentions: 2
Published: over 8 years ago

10.1038/srep41212

Two strategies to engineer flexible loops for improved enzyme thermostability
Cited by: 111
Author(s): Haoran Yu, Yihan Yan, Cheng Zhang, Paul A. Dalby
Software Mentions: 2
Published: over 9 years ago

10.1002/cmdc.201000467

Thiazolidinedione‐Based PI3Kα Inhibitors: An Analysis of Biochemical and Virtual Screening Methods
Cited by: 15
Author(s): Jo‐Anne Pinson, Oleg Schmidt‐Kittler, Jianhua Zhu, Ian G. Jennings, Kenneth W. Kinzler, Bert Vogelstein, David K. Chalmers, Phillip E. Thompson
Software Mentions: 2
Published: over 15 years ago

10.3389/fonc.2019.01294

p38α Mitogen-Activated Protein Kinase Is a Druggable Target in Pancreatic Adenocarcinoma
Cited by: 19
Author(s): Ling Yang, Xiaoting Sun, Ying Ye, Yongtian Lu, Jiane Zuo, Wen Li, Adrian H. Elcock, Shun Zhu
Software Mentions: 2
Published: over 6 years ago

10.1016/j.matbio.2017.02.002

Structural and functional analysis of two small leucine-rich repeat proteoglycans, fibromodulin and chondroadherin
Cited by: 31
Author(s): Patricia Paracuellos, Sebastian Kalamajski, Arkadiusz Bonna, Dominique Bihan, Richard W. Farndale, Erhard Hohenester
Software Mentions: 2
Published: over 8 years ago

10.1002/cmdc.202000237

Structure‐Based Macrocyclization of Substrate Analogue NS2B‐NS3 Protease Inhibitors of Zika, West Nile and Dengue viruses
Cited by: 28
Author(s): Niklas J Braun, Jun-Ping Quek, Simon Huber, Jenny Kouretova, Dorothee Rogge, Heike Lang‐Henkel, Ezekiel Ze Ken Cheong, Bing Liang Alvin Chew, A. Heine, Dahai Luo, Torsten Steinmetzer
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0042473

Crystal Structures of the Network-Forming Short-Arm Tips of the Laminin β1 and γ1 Chains
Cited by: 51
Author(s): Federico Carafoli, Sadaf-Ahmahni Hussain, Erhard Hohenester
Software Mentions: 2
Published: almost 14 years ago

10.3389/fped.2019.00343

Biallelic Missense Mutation in the ECEL1 Underlies Distal Arthrogryposis Type 5 (DA5D)
Cited by: 14
Author(s): Muhammad Umair, Amjad Khan, Amir Hayat, Safdar Abbas, Abdulaziz Asiri, Muhammad Younus, Wajid Amin, Shoaib Nawaz, Shazia Khan, Erum Malik, Majid Alfadhel, Farooq Ahmad
Software Mentions: 2
Published: almost 7 years ago

10.3390/vaccines6010001

Structural Analysis and Epitope Prediction of MHC Class-1-Chain Related Protein-A for Cancer Vaccine Development
Cited by: 16
Author(s): Tayo Alex Adekiya, Raphael Taiwo Aruleba, Sbonelo Khanyile, Priscilla Masamba, Babatunji Emmanuel Oyinloye, Abidemi Paul Kappo
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms22147288

Hybrid QM/MM Simulations Confirm Zn(II) Coordination Sphere That Includes Four Cysteines from the P2 × 4R Head Domain
Cited by: 1
Author(s): Francisco Andrés Peralta, J. Pablo Huidobro‐Toro, Raúl Mera‐Adasme
Software Mentions: 2
Published: about 5 years ago

10.1038/srep42711

Structural basis for fragmenting the exopolysaccharide of Acinetobacter baumannii by bacteriophage ΦAB6 tailspike protein
Cited by: 37
Author(s): I‐Ming Lee, I-Fan Tu, Yang Fu, Tzu‐Ping Ko, Jiahn-Haur Liao, Ning Lin, Chung‐Yi Wu, Chien‐Tai Ren, Andrew H.‐J. Wang, Ching-Ming Chang, Kai‐Fa Huang, Shih‐Hsiung Wu
Software Mentions: 2
Published: over 9 years ago

10.26508/lsa.201900549

Initial phospholipid-dependent Irgb6 targeting to <i>Toxoplasma gondii</i> vacuoles mediates host defense
Cited by: 18
Author(s): Youngae Lee, Hiroshi Yamada, Ariel Pradipta, Ji Guo Su, Masaaki Okamoto, Hikaru Nagaoka, Eizo Takashima, Daron M. Standley, Miwa Sasai, Kohji Takei, Masahiro Yamamoto
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms22147341

Protein–Protein Docking with Large-Scale Backbone Flexibility Using Coarse-Grained Monte-Carlo Simulations
Cited by: 5
Author(s): Mateusz Kurciński, Sebastian Kmiecik, M. Zalewski, Andrzej Koliński
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0235990

Drug targeting CYP2E1 for the treatment of early-stage alcoholic steatohepatitis
Cited by: 18
Author(s): Torsten Diesinger, Vyacheslav Buko, Alfred Lautwein, Radovan Dvorský, Elena Belonovskaya, Oksana Lukivskaya, Elena Naruta, Siarhei Kirko, В. П. Андреев, Dominik Buckert, Sebastian Bergler, Christian Renz, Edith Schneider, Florian Kuchenbauer, Mukesh Kumar, Çagatay Güneş, Berthold Büchele, Thomas Simmet, Dieter Müller‐Enoch, Thomas Wirth, Thomas Haehner
Software Mentions: 2
Published: almost 6 years ago

10.3389/fphar.2020.00526

Kaempferol, a Major Flavonoid in Ginkgo Folium, Potentiates Angiogenic Functions in Cultured Endothelial Cells by Binding to Vascular Endothelial Growth Factor
Cited by: 26
Author(s): Weihui Hu, Huaiyou Wang, Yiteng Xia, Diana Dai, Qingping Xiong, Tina Tingxia Dong, Ran Duan, Gallant Kar-Lun Chan, Qi Qin, Karl Wah-Keung Tsim
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms22157934

Simulations of Promising Indolizidine—α6-β2 Nicotinic Acetylcholine Receptor Complexes
Cited by: 1
Author(s): Francis A. Acquah, Matthew Paramel, Adama Kuta, Syed R. Hussaini, David R. Wallace, Blaine H. M. Mooers
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0130888

Molecular Details of Olfactomedin Domains Provide Pathway to Structure-Function Studies
Cited by: 16
Author(s): Shannon E. Hill, Rebecca K. Donegan, Elaine Nguyen, Tanay M. Desai, Raquel L. Lieberman
Software Mentions: 2
Published: about 11 years ago

10.1038/srep43318

ACCORD: an assessment tool to determine the orientation of homodimeric coiled-coils
Cited by: 6
Author(s): Byeong Won Kim, Yang Ouk Jung, Min Kyung Kim, Do Hoon Kwon, Si Hoon Park, Jun Hoe Kim, Yong Boo Kuk, Sun Joo Oh, Leehyeon Kim, Bong Heon Kim, Woo Seok Yang, Hyun Kyu Song
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0048742

New Insights into the Hendra Virus Attachment and Entry Process from Structures of the Virus G Glycoprotein and Its Complex with Ephrin-B2
Cited by: 30
Author(s): Kai Xu, Yee-Peng Chan, Kanagalaghatta R. Rajashankar, Dimple Khetawat, Lianying Yan, Momchil V. Kolev, Christopher C. Broder, Dimitar B. Nikolov
Software Mentions: 2
Published: over 13 years ago

10.1038/srep44341

Characterization of long and stable de novo single alpha-helix domains provides novel insight into their stability
Cited by: 36
Author(s): Marcin Wolny, Matthew Batchelor, Gail J. Bartlett, Emily G. Baker, Marta Kurzawa, Peter J. Knight, Lorna Dougan, Derek N. Woolfson, Emanuele Paci, Michelle Peckham
Software Mentions: 2
Published: over 9 years ago

10.3390/ijms22168581

Targeting Lipocalin-2 in Inflammatory Breast Cancer Cells with Small Interference RNA and Small Molecule Inhibitors
Cited by: 8
Author(s): Ginette S Santiago-Sánchez, Ricardo Noriega-Rivera, Eliud Hernandez O'Farril, Fatma Valiyeva, Blanca I Quiñones-Díaz, Emilly Schlee Villodre, Bisrat G. Debeb, Andrea Rosado-Albacarys, Pablo E. Vivas‐Mejía
Software Mentions: 2
Published: almost 5 years ago

10.1186/1752-153X-1-7

PocketPicker: analysis of ligand binding-sites with shape descriptors
Cited by: 279
Author(s): Martin Weisel, Ewgenij Proschak, Gisbert Schneider
Software Mentions: 2
Published: over 19 years ago

10.1371/journal.pone.0237999

Spectrum of clinical features and genetic variants in mevalonate kinase (MVK) gene of South Indian families suffering from Hyperimmunoglobulin D Syndrome
Cited by: 11
Author(s): Geeta Govindaraj, Abhinav Jain, Geetha Peethambaran, Rahul C. Bhoyar, Shamsudheen Karuthedath Vellarikkal, Arvind Ganapati, Pulukool Sandhya, Athulya Edavazhippurath, Dhananjayan Dhanasooraj, Jayakrishnan Machinary Puthenpurayil, Krishnan Chakkiyar, Anushree Mishra, Arushi Batra, Anu Punnen, Sathish Kumar, Sridhar Sivasubbu
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms22179140

Structural and Functional Characterizations of Cancer Targeting Nanoparticles Based on Hepatitis B Virus Capsid
Cited by: 0
Author(s): Yunseok Heo, Hyomin Jeong, Youngki Yoo, Ji-Hye Yun, Bumhan Ryu, Young-je Cha, Boram Lee, Ye-Eun Jeon, Jongmin Kim, S.-H. Jeong, Eunji Jo, Jae Sung Woo, Jeewon Lee, Hyun-Soo Cho, Weontae Lee
Software Mentions: 2
Published: almost 5 years ago

10.1038/srep45224

Probing Medin Monomer Structure and its Amyloid Nucleation Using 13C-Direct Detection NMR in Combination with Structural Bioinformatics
Cited by: 10
Author(s): Hannah A. Davies, Daniel J. Rigden, Marie M. Phelan, Jillian Madine
Software Mentions: 2
Published: over 9 years ago

10.1080/21505594.2018.1511677

Genomic analysis of the original Elberg <i>Brucella melitensis</i> Rev.1 vaccine strain reveals insights into virulence attenuation
Cited by: 9
Author(s): Mali Salmon‐Divon, Adva Yeheskel, Jonathan D. Kornspan
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0116570

UFSRAT: Ultra-Fast Shape Recognition with Atom Types –The Discovery of Novel Bioactive Small Molecular Scaffolds for FKBP12 and 11βHSD1
Cited by: 12
Author(s): Steven Shave, Elizabeth A. Blackburn, Jillian Adie, Douglas R. Houston, Manfred Auer, Scott P. Webster, Paul Taylor, Malcolm D. Walkinshaw
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0195355

Solution scattering study of the Bacillus subtilis PgdS enzyme involved in poly-γ-glutamic acids degradation
Cited by: 1
Author(s): Jumei Zeng, Yipeng Jin, Zhongchuan Liu
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms22189771

Insights into Comparative Modeling of VHH Domains
Cited by: 3
Author(s): Akhila Melarkode Vattekatte, Fréderic Cadet, Jean‐Christophe Gelly, Alexandre G. de Brevern
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0196404

Improvement of kynurenine aminotransferase-II inhibitors guided by mimicking sulfate esters
Cited by: 10
Author(s): Gayan S. Jayawickrama, Alireza Nematollahi, Guorong Sun, W. Bret Church
Software Mentions: 2
Published: about 8 years ago

10.1038/srep45505

Global evolutionary history and spatio-temporal dynamics of dengue virus type 2
Cited by: 29
Author(s): Kaifa Wei, Yuhan Li
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0107000

Crystal Structure of the Mineralocorticoid Receptor DNA Binding Domain in Complex with DNA
Cited by: 39
Author(s): William Henry Hudson, Christine Youn, Eric A. Ortlund
Software Mentions: 2
Published: almost 12 years ago

10.3390/ijms221810022

The CXC Chemokine Receptors in Four-Eyed Sleeper (Bostrychus sinensis) and Their Involvement in Responding to Skin Injury
Cited by: 3
Author(s): Meng-Dan Dong, Hong Zhang, Chengyu Mo, Wenjing Li, Wanwan Zhang, Kuntong Jia, Wei Liu, Meisheng Yi
Software Mentions: 2
Published: almost 5 years ago

10.3389/fphar.2020.00246

Structure-Based Screening of Plasmodium berghei Glutathione S-Transferase Identifies CB-27 as a Novel Antiplasmodial Compound
Cited by: 5
Author(s): Emilee E. Colón-Lorenzo, Daisy D. Colón-López, Joel Vega-Rodríguez, Alice Dupin, David A. Fidock, Abel Baerga‐Ortiz, José G. Ortíz, Jürgen Bosch, Adelfa E. Serrano
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0081904

New Conformational State of NHERF1-CXCR2 Signaling Complex Captured by Crystal Lattice Trapping
Cited by: 10
Author(s): Yuanyuan Jiang, Guorong Lu, Laura Trescott, Yuning Hou, Xiaoqing Guan, Shuo Wang, Angelique Stamenkovich, J.S. Brunzelle, Nualpun Sirinupong, Chunying Li, Zhe Yang
Software Mentions: 2
Published: over 12 years ago

10.3390/ijms221910640

Trop2 Forms a Stable Dimer with Significant Structural Differences within the Membrane-Distal Region as Compared to EpCAM
Cited by: 10
Author(s): Miha Pavšič
Software Mentions: 2
Published: almost 5 years ago

10.1038/srep08560

The catalytic role of the M2 metal ion in PP2Cα
Cited by: 16
Author(s): Chang Pan, Junyi Tang, Yaping Xu, Xiao Peng, Hongda Liu, Hao-an Wang, Wenbo Wang, Fanyue Meng, Xiao Yu, Junying Sun
Software Mentions: 2
Published: over 11 years ago

10.1039/c7sc00997f

Computational investigation of O₂diffusion through an intra-molecular tunnel in AlkB; influence of polarization on O₂transport
Cited by: 25
Author(s): Hedieh Torabifard, G. Andrés Cisneros
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-00147-2

PRL3 phosphatase active site is required for binding the putative magnesium transporter CNNM3
Cited by: 41
Author(s): Huizhi Zhang, Guennadi Kozlov, Xinlu Li, Howie Wu, Irina Gulerez, Kalle Gehring
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0123996

Novel Non-Peptide Inhibitors against SmCL1 of Schistosoma mansoni: In Silico Elucidation, Implications and Evaluation via Knowledge Based Drug Discovery
Cited by: 5
Author(s): Atif Zafar, Sameena Ahmad, Asim Rizvi, Masood Ahmad
Software Mentions: 2
Published: about 11 years ago

10.3390/ijms221910862

Loops around the Heme Pocket Have a Critical Role in the Function and Stability of BsDyP from Bacillus subtilis
Cited by: 7
Author(s): Carolina Rodrigues, Patrícia T. Borges, Magalí F. Scocozza, Diogo Silva, André Taborda, Vânia Brissos, Carlos Frazão, Lı́gia O. Martins
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms221910821

Prediction Models for Agonists and Antagonists of Molecular Initiation Events for Toxicity Pathways Using an Improved Deep-Learning-Based Quantitative Structure–Activity Relationship System
Cited by: 6
Author(s): Yasunari Matsuzaka, Shin Totoki, Kentaro Handa, Tetsuyoshi Shiota, Kota Kurosaki, Yoshihiro Uesawa
Software Mentions: 2
Published: almost 5 years ago

10.3389/fphar.2018.00008

Suppressive Effects of Clerodendrum volubile P Beauv. [Labiatae] Methanolic Extract and Its Fractions on Type 2 Diabetes and Its Complications
Cited by: 35
Author(s): Ochuko L. Erukainure, Rahman M. Hafizur, Nurul Kabir, M. Iqbal Choudhary, Olubunmi Atolanı, Priyanka Banerjee, Robert Preißner, Chika I. Chukwuma, Aliyu Muhammad, Eric O. Amonsou, Md. Shahidul Islam
Software Mentions: 2
Published: over 8 years ago

10.1186/s12951-019-0512-0

Design and site-directed compartmentalization of gold nanoclusters within the intrasubunit interfaces of ferritin nanocage
Cited by: 16
Author(s): Jiachen Zang, Bowen Zheng, Xiuqing Zhang, Paolo Arosio, Guanghua Zhao
Software Mentions: 2
Published: about 7 years ago

10.1186/s12974-018-1060-5

Benefits of VCE-003.2, a cannabigerol quinone derivative, against inflammation-driven neuronal deterioration in experimental Parkinson’s disease: possible involvement of different binding sites at the PPARγ receptor
Cited by: 45
Author(s): Concepción Garcı́a, María Gómez‐Cañas, Sonia Burgaz, Belén Palomares, Yolanda Gómez‐Gálvez, Cristina Palomo-Garo, Sara Campo, Joel Ferrer-Hernández, Carolina Pavicic, Carmen Navarrete, M. Luz Bellido, Moisés Garcı́a-Arencibia, M. Ruth Pazos, Eduardo Muñóz, Javier Fernández‐Ruiz
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-017-01186-5

Small methyltransferase RlmH assembles a composite active site to methylate a ribosomal pseudouridine
Cited by: 12
Author(s): Cha San Koh, Rohini Madireddy, Timothy J. Beane, Phillip D. Zamore, А.A. Коростелев
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-00917-y

A bacterial ABC transporter enables import of mammalian host glycosaminoglycans
Cited by: 21
Author(s): Shigetoshi Oiki, Bunzo Mikami, Yukie Maruyama, Kousaku Murata, Wataru Hashimoto
Software Mentions: 2
Published: about 9 years ago

10.3390/vaccines8020288

Multiepitope-Based Subunit Vaccine Design and Evaluation against Respiratory Syncytial Virus Using Reverse Vaccinology Approach
Cited by: 50
Author(s): Muhammad Tahir ul Qamar, Zeeshan Shokat, Iqra Muneer, Usman Ali Ashfaq, Hamna Javed, Farooq Anwar, Amna Bari, Barira Zahid, Nazamid Saari
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0066247

CD38 Structure-Based Inhibitor Design Using the N1-Cyclic Inosine 5′-Diphosphate Ribose Template
Cited by: 24
Author(s): Christelle Moreau, Qun Liu, Richard Graeff, Gerd K. Wagner, Mark Thomas, Joanna M. Swarbrick, Satoshi Shuto, Hon Cheung Lee, Quan Hao, Barry V. L. Potter
Software Mentions: 2
Published: about 13 years ago

10.1155/2021/6670834

High Expression of Interleukin-2 Receptor Subunit Gamma Reveals Poor Prognosis in Human Gastric Cancer
Cited by: 2
Author(s): Deping Wang, Rong Zhao, Yuehong Qi, Jing Shen, Jiayi Hou, Mei-Yue Wang, Xiaogang Bi, Xiaoqing Guo, Ji‐Min Cao
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-01057-z

Structural investigations on orotate phosphoribosyltransferase from Mycobacterium tuberculosis, a key enzyme of the de novo pyrimidine biosynthesis
Cited by: 22
Author(s): Stefano Donini, Davide M. Ferraris, Riccardo Miggiano, Alberto Massarotti, Menico Rizzi
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0196642

Structure of frequency-interacting RNA helicase from Neurospora crassa reveals high flexibility in a domain critical for circadian rhythm and RNA surveillance
Cited by: 9
Author(s): Yalemi Morales, Keith J. Olsen, Jacqueline M. Bulcher, Sean Johnson
Software Mentions: 2
Published: about 8 years ago

10.1039/c7sc00980a

Characterizing the structural ensemble of γ-secretase using a multiscale molecular dynamics approach
Cited by: 46
Author(s): Rodrigo Aguayo‐Ortiz, Cecilia Chávez-García, John E. Straub, Laura Domı́nguez
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-01989-6

Structural studies of the periplasmic portion of the diguanylate cyclase CdgH from Vibrio cholerae
Cited by: 8
Author(s): Min Xu, Yizhi Wang, Xiu‐An Yang, Tao Jiang, Wei Xie
Software Mentions: 2
Published: about 9 years ago

10.1002/cbic.201800462

Structure and Catalytic Mechanism of a Bacterial Friedel–Crafts Acylase
Cited by: 23
Author(s): Tea Pavkov‐Keller, Nina G. Schmidt, Anna Żądło‐Dobrowolska, Wolfgang Kroutil, Karl Gruber
Software Mentions: 2
Published: over 7 years ago

10.18632/oncotarget.8612

Medulloblastoma-associated DDX3 variant selectively alters the translational response to stress
Cited by: 57
Author(s): Seajin Oh, Ryan A. Flynn, Stephen N. Floor, James Purzner, Lance Martin, T. Brian, Simone Schubert, Dedeepya Vaka, A. Sorana Morrissy, Yisu Li, Marcel Kool, Volker Hovestadt, David Jones, Paul A. Northcott, Thomas S. Risch, Hans Jörg Warnatz, Marie Laure Yaspo, Christopher M. Adams, Ryan D. Leib, Marcus R. Breese, Marco A. Marra, David Malkin, Peter Lichter, Jennifer A. Doudna, Stefan M. Pfister, Michael D. Taylor, Howard Y. Chang, Yoon Jae Cho
Software Mentions: 2
Published: over 10 years ago

10.1002/cbic.201900470

Compactness of Protein Folds Alters Disulfide‐Bond Reducibility by Three Orders of Magnitude: A Comprehensive Kinetic Case Study on the Reduction of Differently Sized Tryptophan Cage Model Proteins
Cited by: 3
Author(s): Dániel Horváth, Nóra Taricska, Ernő Keszei, Pál Stráner, Viktor Farkas, Gábor Tóth, András Perczel
Software Mentions: 2
Published: over 6 years ago

10.1002/cbic.202000882

Chemical Biology Tools To Investigate Malaria Parasites
Cited by: 4
Author(s): Johannes Broichhagen, Nicole Kilian
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0030305

Virtual Screening, Identification and In Vitro Testing of Novel Inhibitors of O-Acetyl-L-Serine Sulfhydrylase of Entamoeba histolytica
Cited by: 62
Author(s): Isha Nagpal, Isha Raj, Naidu Subbarao, S. Gourinath
Software Mentions: 2
Published: over 14 years ago

10.1038/s41598-017-02823-9

Efficient Generation of Bispecific Murine Antibodies for Pre-Clinical Investigations in Syngeneic Rodent Models
Cited by: 31
Author(s): Aran F. Labrijn, Joyce Meesters, Matthew W. Bunce, Anthony A. Armstrong, Sandeep Somani, Tom Nesspor, Mark L. Chiu, Işıl Altıntaş, Sandra Verploegen, Janine Schuurman, Paul W.H.I. Parren
Software Mentions: 2
Published: about 9 years ago

10.3389/fphar.2019.00474

Crystal Structure of the Monomeric Extracellular Domain of α9 Nicotinic Receptor Subunit in Complex With α-Conotoxin RgIA: Molecular Dynamics Insights Into RgIA Binding to α9α10 Nicotinic Receptors
Cited by: 38
Author(s): Marios Zouridakis, Athanasios Papakyriakou, Igor A. Ivanov, Igor E. Kasheverov, Victor I. Tsetlin, Socrates J. Tzartos, Petros Giastas
Software Mentions: 2
Published: about 7 years ago

10.1002/cbic.201300136

The Structure of Glycerol Trinitrate Reductase NerA from<i>Agrobacterium radiobacter</i>Reveals the Molecular Reason for Nitro‐ and Ene‐Reductase Activity in OYE Homologues
Cited by: 10
Author(s): Gustav Oberdorfer, Alexandra Binter, Silvia Wallner, Katharina Durchschein, Mélanie Hall, Kurt Faber, Peter Macheroux, Karl Gruber
Software Mentions: 2
Published: about 13 years ago