10.3390/pharmaceutics13081182

Polyphenols Epigallocatechin Gallate and Resveratrol, and Polyphenol-Functionalized Nanoparticles Prevent Enterovirus Infection through Clustering and Stabilization of the Viruses
Cited by: 12
Author(s): Dhanik Reshamwala, Sailee Shroff, Olivier Sheik Amamuddy, Valentino Laquintana, Nunzio Denora, Antonella Zacheo, Vili Lampinen, Vesa P. Hytönen, Özlem Tastan Bishop, Silke Krol, Varpu Marjomäki
Software Mentions: 2
Published: about 5 years ago

10.3389/fmolb.2020.00029

Molecular Simulation of Oncostatin M and Receptor (OSM–OSMR) Interaction as a Potential Therapeutic Target for Inflammatory Bowel Disease
Cited by: 19
Author(s): Qingqing Du, Qian Yan, Weiwei Xue
Software Mentions: 2
Published: over 6 years ago

10.3390/insects12090827

Identification of Core Genes of Toll-like Receptor Pathway from Lymantria dispar and Induced Expression upon Immune Stimulant
Cited by: 3
Author(s): Long Liu, Yu‐Shan Wei, Dun Wang
Software Mentions: 2
Published: about 5 years ago

10.3389/fmolb.2017.00068

Structure and Interactions of the TPR Domain of Sgt2 with Yeast Chaperones and Ybr137wp
Cited by: 18
Author(s): E. Krysztofinska, N.J. Evans, Arjun Thapaliya, James W. Murray, Rhodri M. L. Morgan, Santiago Martínez-Lumbreras, Rivka L. Isaacson
Software Mentions: 2
Published: about 9 years ago

10.6026/97320630017337

Differential binding of SARS-CoV-2 Spike protein variants to its cognate receptor hACE2 using molecular modeling based binding analysis
Cited by: 2
Author(s): Anuja Krishnan
Software Mentions: 2
Published: over 5 years ago

10.3389/fmolb.2021.716466

SeamDock: An Interactive and Collaborative Online Docking Resource to Assist Small Compound Molecular Docking
Cited by: 17
Author(s): Samuel Murail, Sjoerd J. de Vries, Julien Rey, Gautier Moroy, Pierre Tufféry
Software Mentions: 2
Published: about 5 years ago

10.1074/jbc.M113.480657

Ca2+-dependent Structural Changes in the B-cell Receptor CD23 Increase Its Affinity for Human Immunoglobulin E
Cited by: 27
Author(s): Daopeng Yuan, Anthony H. Keeble, Richard G. Hibbert, Stella M. Fabiane, Hannah J. Gould, James M. McDonnell, Andrew J. Beavil, Brian J. Sutton, B. Dhaliwal
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pbio.2003145

Uncovering protein–protein interactions through a team-based undergraduate biochemistry course
Cited by: 14
Author(s): David L. Cookmeyer, Emily S. Winesett, Bashkim Kokona, Adam R. Huff, Sabina Aliev, Noah B. Bloch, Joshua A. Bulos, Irene L. Evans, Christian Fagre, Kerilyn N. Godbe, Maryna Khromava, Daniel Konstantinovsky, Alexander E. Lafrance, Alexandra J. Lamacki, Robert C. Parry, Jeanne M. Quinn, Alana M. Thurston, Kathleen J. S. Tsai, Aurelio Mollo, Max J. Cryle, Robert Fairman, Louise K. Charkoudian
Software Mentions: 2
Published: almost 9 years ago

10.3390/life11040346

Behavior of Chemokine Receptor 6 (CXCR6) in Complex with CXCL16 Soluble form Chemokine by Molecular Dynamic Simulations: General Protein‒Ligand Interaction Model and 3D-QSAR Studies of Synthetic Antagonists
Cited by: 4
Author(s): Giovanny Aguilera-Durán, Antonio Romo-Mancillas
Software Mentions: 2
Published: over 5 years ago

10.1074/jbc.M113.534628

Crystal Structures of Leukotriene C4 Synthase in Complex with Product Analogs
Cited by: 22
Author(s): Damian Niegowski, Thea K. Kleinschmidt, Ulrika Olsson, Shabbir Ahmad, Agnes Rinaldo-Matthis, Jesper Z. Haeggström
Software Mentions: 2
Published: over 12 years ago

10.1074/jbc.RA119.008817

A knottin scaffold directs the CXC-chemokine–binding specificity of tick evasins
Cited by: 21
Author(s): Angela Lee, Maud Déruaz, Christopher J. Lynch, Graham Davies, Khushboo Singh, Yara Alenazi, James R. O. Eaton, Akane Kawamura, Jeffrey P. Shaw, Amanda E. I. Proudfoot, João Marcos Domingues Dias, Shoumo Bhattacharya
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2018.01942

Look and Outlook on Enzyme-Mediated Macrolide Resistance
Cited by: 66
Author(s): Tolou Golkar, Michał Zieliński, A.M. Berghuis
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2021.630293

Generation of Tetracycline and Rifamycin Resistant Chlamydia Suis Recombinants
Cited by: 3
Author(s): H. R. Marti, Sankhya Bommana, Timothy D. Read, Theresa Pesch, Barbara Prähauser, Deborah Dean, Nicole Borel
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2019.02079

A Unique Homo-Hexameric Structure of 2-Aminomuconate Deaminase in the Bacterium Pseudomonas species AP–3
Cited by: 3
Author(s): Yanjuan Chen, Yiping Chen, Hua Jiang, Deren Lu, Tingting Hu, Gang Bi, Yuping Ran, Bin Yu, Hao Dong, Dan Su
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2020.598789

Isolation, Characterization and Structure Elucidation of a Novel Lantibiotic From Paenibacillus sp.
Cited by: 10
Author(s): Jerzy Karczewski, Stephen P Krasucki, Papa Nii Asare‐Okai, Carl Diehl, Andrew Friedman, C. M. Brown, Yukari Maezato, Stephen J. Streatfield
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2018.00371

Intrahost Norovirus Evolution in Chronic Infection Over 5 Years of Shedding in a Kidney Transplant Recipient
Cited by: 12
Author(s): Andrej Steyer, Tilen Konte, Martin Sagadin, Marko Kolenc, Andrej Škoberne, Julija Germ, Tadeja Dovč-Drnovšek, Miha Arnol, Mateja Poljšak-Prijatelj
Software Mentions: 2
Published: over 8 years ago

10.3389/fmolb.2015.00056

A script to highlight hydrophobicity and charge on protein surfaces
Cited by: 83
Author(s): Dominique Hagemans, Ianthe A. E. M. van Belzen, Tania Morán Luengo, Stefan Rüdiger
Software Mentions: 2
Published: about 11 years ago

10.3389/fphar.2020.00246

Structure-Based Screening of Plasmodium berghei Glutathione S-Transferase Identifies CB-27 as a Novel Antiplasmodial Compound
Cited by: 5
Author(s): Emilee E. Colón-Lorenzo, Daisy D. Colón-López, Joel Vega-Rodríguez, Alice Dupin, David A. Fidock, Abel Baerga‐Ortiz, José G. Ortíz, Jürgen Bosch, Adelfa E. Serrano
Software Mentions: 2
Published: over 6 years ago

10.3390/molecules26113121

Synthesis and Characterization of Some New Quinoxalin-2(1H)one and 2-Methyl-3H-quinazolin-4-one Derivatives Targeting the Onset and Progression of CRC with SAR, Molecular Docking, and ADMET Analyses
Cited by: 7
Author(s): Nahed N. E. El-Sayed, Taghreed M. Al-Otaibi, Mona Alonazi, Vijay H. Masand, Assem Barakat, Zainab M. Almarhoon, Abir Ben Bacha
Software Mentions: 2
Published: over 5 years ago

10.1074/jbc.RA120.016295

Antibiotic binding releases autoinhibition of the TipA multidrug-resistance transcriptional regulator
Cited by: 2
Author(s): Xuping Jiang, Linjuan Zhang, Maikun Teng, Li Xu
Software Mentions: 2
Published: almost 6 years ago

10.1074/jbc.RA120.015376

Structure of an ancestral ADP-dependent kinase with fructose-6P reveals key residues for binding, catalysis, and ligand-induced conformational changes
Cited by: 4
Author(s): Sebastián M. Muñoz, Víctor Castro‐Fernández, Victoria Guixé
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pbio.3000347

Assembling a plug-and-play production line for combinatorial biosynthesis of aromatic polyketides in Escherichia coli
Cited by: 32
Author(s): Matthew Cummings, Anna Peters, George F. S. Whitehead, Binuraj R. K. Menon, Jason Micklefield, Simon J. Webb, Eriko Takano
Software Mentions: 2
Published: about 7 years ago

10.1074/jbc.RA120.014005

Structural comparisons of host and African swine fever virus dUTPases reveal new clues for inhibitor development
Cited by: 6
Author(s): Rui Liang, Gang Wang, Ding Zhang, Gang Ye, Mengxia Li, Yuejun Shi, Jiale Shi, Huanchun Chen, Guiqing Peng
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2018.01925

Characterization of ML-005, a Novel Metaproteomics-Derived Esterase
Cited by: 6
Author(s): Premankur Sukul, Natalie Lupilov, Lars I. Leichert
Software Mentions: 2
Published: about 8 years ago

10.1016/j.jbc.2021.100286

Pantoea stewartii WceF is a glycan biofilm-modifying enzyme with a bacteriophage tailspike-like fold
Cited by: 5
Author(s): Tobias Irmscher, Yvette Roske, Igor Gayk, Valentin Dunsing, Salvatore Chiantia, Udo Heinemann, Stefanie Barbirz
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pbio.1001776

Segmental Helical Motions and Dynamical Asymmetry Modulate Histidine Kinase Autophosphorylation
Cited by: 97
Author(s): A.E. Mechaly, Nathalie Sassoon, Jean‐Michel Betton, Pedro M. Alzari
Software Mentions: 2
Published: over 12 years ago

10.3390/molecules22101696

Biological Evaluation and Molecular Docking of Protocatechuic Acid from Hibiscus sabdariffa L. as a Potent Urease Inhibitor by an ESI-MS Based Method
Cited by: 25
Author(s): Sherif T. S. Hassan, Emil Švajdlenka
Software Mentions: 2
Published: about 9 years ago

10.3389/fmicb.2018.00649

Mechanistic and Structural Insights Into the Unique TetR-Dependent Regulation of a Drug Efflux Pump in Mycobacterium abscessus
Cited by: 24
Author(s): Matthias Richard, Ana Victoria Gutiérrez, Albertus Viljoen, Éric Ghigo, Mickaël Blaise, Laurent Kremer
Software Mentions: 2
Published: over 8 years ago

10.3390/molecules26123607

Investigating the Disordered and Membrane-Active Peptide A-Cage-C Using Conformational Ensembles
Cited by: 0
Author(s): Olena Dobrovolska, Øyvind Strømland, Ørjan Sele Handegård, Martin Jakubec, Morten L. Govasli, Åge A. Skjevik, Nils Åge Frøystein, Knut Teigen, Øyvind Halskau
Software Mentions: 2
Published: over 5 years ago

10.1016/j.jbc.2021.100506

Structural basis for the DNA-binding activity of human ARID4B Tudor domain
Cited by: 7
Author(s): Jie Ren, Hongwei Yao, Wanhui Hu, Sarah Perrett, Weibin Gong, Yingang Feng
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2017.00541

Crystal Structure of Glyceraldehyde-3-Phosphate Dehydrogenase from the Gram-Positive Bacterial Pathogen A. vaginae, an Immunoevasive Factor that Interacts with the Human C5a Anaphylatoxin
Cited by: 21
Author(s): Javier Querol-García, Francisco Fernández, Ana V. Marín, Sara Gómez, Daniel Fullà, Cecilia Melchor-Tafur, V. Franco-Hidalgo, Sebastián Albertí, Judith Juanhuix, Santiago Rodrı́guez de Córdoba, José R. Regueiro, M. Cristina Vega
Software Mentions: 2
Published: over 9 years ago

10.1016/j.jbc.2021.100713

The mycobacterial proteasomal ATPase Mpa forms a gapped ring to engage the 20S proteasome
Cited by: 3
Author(s): Yuanyuan Yin, Amanda Kovach, Hao-Chi Hsu, K. Heran Darwin, Huilin Li
Software Mentions: 2
Published: almost 6 years ago

10.1016/j.jbc.2021.100823

Structures of the alkanesulfonate monooxygenase MsuD provide insight into C–S bond cleavage, substrate scope, and an unexpected role for the tetramer
Cited by: 5
Author(s): Jeremy Liew, Israa M. El Saudi, S. Nguyen, Denyce K. Wicht, Daniel Dowling
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pbio.3001148

Molecular basis of F-actin regulation and sarcomere assembly via myotilin
Cited by: 9
Author(s): Július Košťan, Miha Pavšič, Vid Puž, Thomas C. Schwarz, Friedel Drepper, Sibylle Molt, Melissa A. Graewert, Claudia Schreiner, Sara Sajko, Peter F.M. van der Ven, Adekunle Onipe, Dmitri I. Svergun, Bettina Warscheid, Robert Konrat, Dieter O. Fürst, Brigita Lenarčič, Kristina Djinović-Carugo
Software Mentions: 2
Published: over 5 years ago

10.1016/j.jbc.2021.100912

Cryo-EM reveals conformational flexibility in apo DNA polymerase ζ
Cited by: 4
Author(s): Chloe D. Truong, Theodore A. Craig, Gaofeng Cui, Maria Victoria Botuyan, Rachel A. Serkasevich, Kayi Y. Chan, Georges Mer, Po-Lin Chiu, Rajiv Kumar
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2017.02385

Structure–Function Relationship of Aminopeptidase P from Pseudomonas aeruginosa
Cited by: 11
Author(s): Peng Cheng, Li Liu, Changcheng Li, Libang He, Tao Li, Yanjiao Shen, Chao Gao, Ningyu Wang, Yong Xia, Yuanfeng Zhu, Yingjie Song, Qian Lei, Luoting Yu, Rui Bao
Software Mentions: 2
Published: almost 9 years ago

10.3390/ph12020058

Insights into the Molecular Mechanisms of Eg5 Inhibition by (+)-Morelloflavone
Cited by: 11
Author(s): Tomisin Happy Ogunwa, Emiliano Laudadio, Roberta Galeazzi, Takayuki Miyanishi
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2021.679246

Genetic Characteristics of Human Parainfluenza Virus Types 1–4 From Patients With Clinical Respiratory Tract Infection in China
Cited by: 8
Author(s): Nan Shao, Bo Liu, Yan Xiao, Xinming Wang, Lili Ren, Jie Dong, Lu Sun, Yafang Zhu, Ting Zhang, Fan Yang
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.605705

Discovery of an Antibiotic-Related Small Protein of Biocontrol Strain Pseudomonas sp. Os17 by a Genome-Mining Strategy
Cited by: 1
Author(s): Kasumi Takeuchi, Wataru Tsuchiya, Zui Fujimoto, Kosumi Yamada, Nobutaka Someya, Toshimasa Yamazaki
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2021.632095

Integrated Proteomic and Transcriptomic Analyses Reveal the Roles of Brucella Homolog of BAX Inhibitor 1 in Cell Division and Membrane Homeostasis of Brucella suis S2
Cited by: 2
Author(s): Guangdong Zhang, Fangli Zhong, Lei Chen, Peipei Qin, Junmei Li, Feijie Zhi, Lulu Tian, Dong Zhou, Peng Lin, Huatao Chen, Kai-Fu Tang, Wei Liu, Yaping Jin, Aihua Wang
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1002112

A Structural Model for Binding of the Serine-Rich Repeat Adhesin GspB to Host Carbohydrate Receptors
Cited by: 78
Author(s): Tasia M. Pyburn, Barbara A. Bensing, Yan Q. Xiong, Bruce J. Melancon, Thomas Tomasiak, Nicholas J Ward, Victoria Yankovskaya, Kevin Michael Oliver, Gary Cecchini, Gary A. Sulikowski, Matthew J. Tyska, Paul M. Sullam, T.M. Iverson
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.ppat.1002751

Crystal Structures Reveal the Multi-Ligand Binding Mechanism of Staphylococcus aureus ClfB
Cited by: 51
Author(s): Hua Xiang, Yue Feng, Jiawei Wang, Liu B, Ye-Guang Chen, Lei Liu, Xuming Deng, Maojun Yang
Software Mentions: 2
Published: over 14 years ago

10.3390/molecules25122884

Imunofan—RDKVYR Peptide—Stimulates Skin Cell Proliferation and Promotes Tissue Repair
Cited by: 6
Author(s): Justyna Sawicka, Maria Dzierżyńska, Anna Wardowska, Milena Deptuła, Piotr Rogujski, Paweł Sosnowski, Natalia Filipowicz, Alina Mieczkowska, Piotr Sass, Anna Pawlik, Aleksandra Hać, Adriana Schumacher, Magdalena Gucwa, Natalia Karska, Jolanta Kamińska, Rafał Płatek, Jarosław Mazuryk, Jacek Zieliński, Karolina Kondej, Piotr Młynarz, Piotr Mucha, Piotr Skowron, Łukasz Janus, Anna Herman-Antosiewicz, Paweł Sachadyn, Artur Czupryn, Arkadiusz Piotrowski, Michał Pikuła, Sylwia Rodziewicz‐Motowidło
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pbio.3000277

Structural insights into histone chaperone Chz1-mediated H2A.Z recognition and histone replacement
Cited by: 17
Author(s): Yunyun Wang, Sheng Liu, Lu Sun, Ning Xu, Shan Shan, Fei Wu, Xiaoping Liang, Yingzi Huang, Ed Luk, Carl Wu, Zheng Zhou
Software Mentions: 2
Published: over 7 years ago

10.6026/97320630015151

Computational classification of MocR transcriptional regulators into subgroups as a support for experimental and functional characterization
Cited by: 3
Author(s): Stefano Pascarella
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.ppat.1003078

The GM2 Glycan Serves as a Functional Coreceptor for Serotype 1 Reovirus
Cited by: 95
Author(s): Kerstin Reiß, Jennifer Stencel, Yan Liu, Bärbel S. Blaum, Dirk M. Reiter, Ten Feizi, Terence S. Dermody, Thilo Stehle
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.ppat.1003275

Monomeric Nucleoprotein of Influenza A Virus
Cited by: 87
Author(s): Sylvie Chenavas, Leandro F. Estrozi, Anny Slama‐Schwok, Bernard Delmas, Carmelo Di Primo, Florence Baudin, Xinping Li, Thibaut Crépin, Rob W.H. Ruigrok
Software Mentions: 2
Published: over 13 years ago

10.3389/fmicb.2018.03329

Structural and Physiological Exploration of Salmonella Typhi YfdX Uncovers Its Dual Function in Bacterial Antibiotic Stress and Virulence
Cited by: 6
Author(s): Hye Seon Lee, Mi Kyung Lee, Jun‐Seob Kim, Hae-Ran Lee, Hang‐Sik Shin, Moo‐Seung Lee, Kyeong Sik Jin, Cheol-Hee Kim, Bonsu Ku, Choong-Min Ryu, Seung Jun Kim
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.ppat.1003624

The Crystal Structure and RNA-Binding of an Orthomyxovirus Nucleoprotein
Cited by: 36
Author(s): Wei Zheng, John S. Olson, Vikram N. Vakharia, Yizhi Jane Tao
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.ppat.1003673

Crystal Structure of the Gamma-2 Herpesvirus LANA DNA Binding Domain Identifies Charged Surface Residues Which Impact Viral Latency
Cited by: 29
Author(s): Bruno E. Correia, Sofia Cerqueira, Chantal Beauchemin, Marta Pires de Miranda, Shijun Li, Rajesh Ponnusamy, Lénia Rodrigues, Thomas R. Schneider, Maria Arménia Carrondo, Kenneth M. Kaye, J. Pedro Simas, Colin E. McVey
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.ppat.1004109

Structural and Biochemical Characterization Reveals LysGH15 as an Unprecedented “EF-Hand-Like” Calcium-Binding Phage Lysin
Cited by: 68
Author(s): Jingmin Gu, Yingang Feng, Xin Feng, Changjiang Sun, Liancheng Lei, Wei Ding, Fujun Niu, Libin Jiao, Mei Yang, Yue Li, Xiaohe Liu, Jun Song, Ziyin Cui, Dong Wook Han, Cheng Du, Yongjun Yang, Songying Ouyang, Zhijie Liu, Han Wang
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.ppat.1004169

Structural Insights into SraP-Mediated Staphylococcus aureus Adhesion to Host Cells
Cited by: 79
Author(s): Yong Yang, Yong-Liang Jiang, Juan Zhang, Lei Wang, Xiaohui Bai, Shijie Zhang, Yan-Min Ren, Na Li, Yong Hui Zhang, Zhiyong Zhang, Qingguo Gong, Yide Mei, Ting Xue, Jing-Ren Zhang, Yuxing Chen, Cong‐Zhao Zhou
Software Mentions: 2
Published: over 12 years ago

10.3389/fmicb.2015.01380

A Zinc-Dependent Protease AMZ-tk from a Thermophilic Archaeon is a New Member of the Archaemetzincin Protein Family
Cited by: 9
Author(s): Baolei Jia, Zhengqun Li, Jinliang Liu, Ying Sun, Xiaomeng Jia, Yuan Xuan, Jiayan Zhang, Che Ok Jeon
Software Mentions: 2
Published: almost 11 years ago

10.3390/molecules24122299

Molecular Informatics Studies of the Iron-Dependent Regulator (ideR) Reveal Potential Novel Anti-Mycobacterium ulcerans Natural Product-Derived Compounds
Cited by: 8
Author(s): Samuel K. Kwofie, Kweku S. Enninful, Jaleel A. Yussif, Lina A. Asante, Mavis Adjei, Kwabena Kan-Dapaah, Elvis K. Tiburu, Wilhelmina A. Mensah, Whelton A. Miller, Lydia Mosi, Michael D. Wilson
Software Mentions: 2
Published: over 7 years ago

10.26508/lsa.201800187

The crystal structure of Staufen1 in complex with a physiological RNA sheds light on substrate selectivity
Cited by: 15
Author(s): Daniela Lazzaretti, L. Bandholz-Cajamarca, Christiane Emmerich, Kristina Schaaf, Claire Basquin, Uwe Irion, Fulvia Bono
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.ppat.1005362

Structural Based Analyses of the JC Virus T-Antigen F258L Mutant Provides Evidence for DNA Dependent Conformational Changes in the C-Termini of Polyomavirus Origin Binding Domains
Cited by: 6
Author(s): Gretchen Meinke, Paul J. Phelan, Jong Shin, David Gagnon, Jacques Archambault, Andrew Bohm, Peter A. Bullock
Software Mentions: 2
Published: almost 11 years ago

10.3389/fmicb.2018.01750

Crystal Structures of R-Type Bacteriocin Sheath and Tube Proteins CD1363 and CD1364 From Clostridium difficile in the Pre-assembled State
Cited by: 12
Author(s): Nina Schwemmlein, Jan Pippel, E.M. Gazdag, Wulf Blankenfeldt
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pbio.1002053

FAX1, a Novel Membrane Protein Mediating Plastid Fatty Acid Export
Cited by: 140
Author(s): Nannan Li, Irene Luise Gügel, Patrick Giavalisco, Viktoria Zeisler, Lukas Schreiber, Jürgen Soll, Katrin Philippar
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pbio.0020274

Recognition and Accommodation at the Androgen Receptor Coactivator Binding Interface
Cited by: 199
Author(s): Eugene Hur, S.J. Pfaff, E.S. Payne, Hanne Grøn, Benjamin M. Buehrer, Robert J. Fletterick
Software Mentions: 2
Published: about 22 years ago

10.1371/journal.pbio.3001386

Structural characterization of the Plasmodium falciparum lactate transporter PfFNT alone and in complex with antimalarial compound MMV007839 reveals its inhibition mechanism
Cited by: 9
Author(s): Xi Peng, Nan Wang, Angqi Zhu, Hanwen Xu, Jialu Li, Yanxia Zhou, Chen Wang, Qi Xiao, Li Guo, Fei Liu, Zhijun Jia, Huaichuan Duan, Jianping Hu, Weidan Yuan, Jia Geng, Chuangye Yan, Xin Jiang, Dong Deng
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.ppat.1006552

Structural analysis of P. falciparum KAHRP and PfEMP1 complexes with host erythrocyte spectrin suggests a model for cytoadherent knob protrusions
Cited by: 27
Author(s): Erin E. Cutts, Niklas Laasch, Dirk M. Reiter, Raphael Trenker, Leanne M. Slater, Phillip J. Stansfeld, Ioannis Vakonakis
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.ppat.1006714

A mobile loop near the active site acts as a switch between the dual activities of a viral protease/deubiquitinase
Cited by: 15
Author(s): Isabelle Jupin, Maya Ayach, Lucile Jomat, Sonia Fieulaine, Stéphane Bressanelli
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.ppat.1007024

Glycoengineering HIV-1 Env creates ‘supercharged’ and ‘hybrid’ glycans to increase neutralizing antibody potency, breadth and saturation
Cited by: 19
Author(s): Ema T. Crooks, Samantha L. Grimley, Michelle D. Cully, Keiko Osawa, Gillian Dekkers, Kevin O. Saunders, Sebastian Rämisch, Sergey Menis, William R. Schief, Nicole A. Doria‐Rose, Barton F. Haynes, Ben Murrell, Evan M. Cale, Amarendra Pegu, John R. Mascola, Gestur Vidarsson, James Μ. Binley
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pbio.2005160

DENR–MCTS1 heterodimerization and tRNA recruitment are required for translation reinitiation
Cited by: 30
Author(s): Yasar Luqman Ahmed, Sibylle Schleich, Jonathan Bohlen, Nicolas Mandel, Bernd Simon, Irmgard Sinning, Aurelio A. Teleman
Software Mentions: 2
Published: over 8 years ago

10.1038/s42003-019-0562-8

Identification of an amphipathic peptide sensor of the Bacillus subtilis fluid membrane microdomains
Cited by: 5
Author(s): Yiping Jiang, Xin Dai, Mingming Qin, Zhihong Guo
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pbio.3001209

Structural basis for SARS-CoV-2 neutralizing antibodies with novel binding epitopes
Cited by: 31
Author(s): Dan Fu, Guangshun Zhang, Yuhui Wang, Zheng Zhang, Hengrui Hu, Shū Shěn, Jun Wu, Bo Li, Xin Li, Yaohui Fang, Jia Liu, Qiao Wang, Yunjiao Zhou, Wei Wang, Yufeng Li, Zhonghua Lu, Xiaoxiao Wang, Cui Nie, Yujie Tian, Da Chen, Yuan Wang, Xuan Zhou, Qisheng Wang, Feng Yu, Chen Zhang, Changjing Deng, Liang Zhou, Guang-kuo Guan, Ningsheng Shao, Zhiyong Lou, Fei Deng, Hongkai Zhang, Xinwen Chen, Manli Wang, Louis Liu, Zihe Rao, Yu Guo
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2018.01466

Insight Into the Interaction Between RNA Polymerase and VPg for Murine Norovirus Replication
Cited by: 10
Author(s): Jihye Lee, Beom Seok Park, Kang Rok Han, Scott B. Biering, Soo J Kim, Jayoung Choi, Jong Hyeon Seok, Intekhab Alam, Mi Sook Chung, Ho M. Kim, Seungmin Hwang, Kyung H. Kim
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.ppat.1008383

Crystal structure of Mokola virus glycoprotein in its post-fusion conformation
Cited by: 15
Author(s): Laura Belot, Malika Ouldali, Stéphane Roche, Pierre Legrand, Yves Gaudin, Aurélie A. Albertini
Software Mentions: 2
Published: over 6 years ago

10.3390/ph14070669

New (Iso)quinolinyl-pyridine-2,6-dicarboxamide G-Quadruplex Stabilizers. A Structure-Activity Relationship Study
Cited by: 7
Author(s): Enrico Cadoni, Pedro R. Magalhães, Rita M. Emídio, Eduarda Mendes, Jorge M. B. Vítor, Josué Carvalho, Carla Cruz, Bruno L. Victor, Alexandra Paulo
Software Mentions: 2
Published: over 5 years ago

10.3389/fmed.2021.724826

Novel MYO1D Missense Variant Identified Through Whole Exome Sequencing and Computational Biology Analysis Expands the Spectrum of Causal Genes of Laterality Defects
Cited by: 5
Author(s): Rabab Said Alsafwani, Khalidah Khalid Nasser, Thoraia Shinawi, Babajan Banaganapalli, Hanan Abdelhalim ElSokary, Zhaher F. Zaher, Noor Ahmad Shaik, Gaser Abdelmohsen, Jumana Y. Al‐Aama, Adam J. Shapiro, Osman O. Al‐Radi, Turki S Alahmadi
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2020.00583

The Interaction of RecA With Both CheA and CheW Is Required for Chemotaxis
Cited by: 3
Author(s): Elisabet Frutos-Grilo, María Marsal, Oihane Irazoki, Jordi Barbé, Susana Campoy
Software Mentions: 2
Published: over 6 years ago

10.21203/rs.3.rs-625642/v1

Structures of synthetic nanobody–SARS-CoV-2–RBD complexes reveal distinct sites of interaction and recognition of variants
Cited by: 0
Author(s): David H. Margulies, Javeed Ahmad, Jiansheng Jiang, Lisa F. Boyd, Allison Zeher, Rick Huang, Di Xia, Kannan Natarajan
Software Mentions: 2
Published: over 5 years ago

10.1186/1742-4690-7-21

Response of a simian immunodeficiency virus (SIVmac251) to raltegravir: a basis for a new treatment for simian AIDS and an animal model for studying lentiviral persistence during antiretroviral therapy
Cited by: 38
Author(s): Mark G. Lewis, Sandro Norelli, Matt Collins, Maria Letizia Barreca, Nunzio Iraci, Barbara Chirullo, Jake Yalley-Ogunro, Jack Greenhouse, Fausto Titti, Enrico Garaci, Andrea Savarino
Software Mentions: 2
Published: over 16 years ago

10.1186/1742-4690-10-64

Biophysical characterization and crystal structure of the Feline Immunodeficiency Virus p15 matrix protein
Cited by: 12
Author(s): J. Serrière, Xavier Robert, M. Perez, Patrice Gouet, Christophe Guillon
Software Mentions: 2
Published: over 13 years ago

10.1186/1742-4690-10-126

Functional conservation of HIV-1 Gag: implications for rational drug design
Cited by: 56
Author(s): Guangdi Li, Jens Verheyen, Soo-Yon Rhee, Arnout Voet, Anne‐Mieke Vandamme, Kristof Theys
Software Mentions: 2
Published: almost 13 years ago

10.3389/fmicb.2021.669220

Interrogating the Role of the Two Distinct Fructose-Bisphosphate Aldolases of Bacillus methanolicus by Site-Directed Mutagenesis of Key Amino Acids and Gene Repression by CRISPR Interference
Cited by: 6
Author(s): Kerstin Schultenkämper, Desirée D. Gütle, Marina Gil López, Laura B. Keller, Lin Zhang, Oliver Einsle, Jean‐Pierre Jacquot, Volker F. Wendisch
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2018.00489

Computational Insight Into the Structural Organization of Full-Length Toll-Like Receptor 4 Dimer in a Model Phospholipid Bilayer
Cited by: 17
Author(s): Mahesh Chandra Patra, Hyuk‐Kwon Kwon, Maria Batool, Sangdun Choi
Software Mentions: 2
Published: over 8 years ago

10.1126/sciadv.aav2623

A functional proteomics platform to reveal the sequence determinants of lysine methyltransferase substrate selectivity
Cited by: 25
Author(s): Evan M. Cornett, Bradley M. Dickson, Krzysztof Krajewski, Nicholas Spellmon, Andrew Umstead, Robert M. Vaughan, Kevin M. Shaw, Philip Versluis, Martis W. Cowles, J.S. Brunzelle, Zhe Yang, Irving E. Vega, Zu Wen Sun, Scott B. Rothbart
Software Mentions: 2
Published: almost 8 years ago

10.26508/lsa.202000873

A conserved PI(4,5)P2–binding domain is critical for immune regulatory function of DOCK8
Cited by: 8
Author(s): Tetsuya Sakurai, Mutsuko Kukimoto-Niino, Kazufumi Kunimura, Nana Yamane, Daiji Sakata, Ryosuke Aihara, Tomoharu Yasuda, Shigeyuki Yokoyama, Mikako Shirouzu, Yoshihiro Fukui, Takehito Uruno
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2017.01860

Engineering of Fc Fragments with Optimized Physicochemical Properties Implying Improvement of Clinical Potentials for Fc-Based Therapeutics
Cited by: 51
Author(s): Chunpeng Yang, Xinyu Gao, Rui Gong
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0025369

Insights into the Membrane Interactions of the Saposin-Like Proteins Na-SLP-1 and Ac-SLP-1 from Human and Dog Hookworm
Cited by: 14
Author(s): Charlene Willis, Conan K. Wang, Asiah Osman, Anne Simon, Darren Pickering, Jason Mulvenna, Alan Riboldi-Tunicliffe, Malcolm K. Jones, Alex Loukas, Andreas Hofmann
Software Mentions: 2
Published: about 15 years ago

10.3390/molecules26071877

In Silico Design and Selection of New Tetrahydroisoquinoline-Based CD44 Antagonist Candidates
Cited by: 4
Author(s): Angel J. Ruiz-Moreno, Atilio Reyes Romero, Alexander Dömling, Marco A. Velasco-Velázquez
Software Mentions: 2
Published: over 5 years ago

10.1038/srep07115

Crystal structure and stable property of the cancer-associated heterotypic nucleosome containing CENP-A and H3.3
Cited by: 62
Author(s): Yasuhiro Arimura, Kazuyoshi Shirayama, Naoki Horikoshi, Ryosuke Fujita, Hiroyuki Taguchi, Wataru Kagawa, Tatsuo Fukagawa, Geneviève Almouzni, Hitoshi Kurumizaka
Software Mentions: 2
Published: almost 12 years ago

10.1038/srep08372

Crystal structure of VmoLac, a tentative quorum quenching lactonase from the extremophilic crenarchaeon Vulcanisaeta moutnovskia
Cited by: 38
Author(s): Julien Hiblot, Janek Bzdrenga, Charlotte Champion, Éric Chabrière, Mikael Elias
Software Mentions: 2
Published: over 11 years ago

10.3389/fimmu.2014.00022

Immunoglobulin and T Cell Receptor Genes: IMGT® and the Birth and Rise of Immunoinformatics
Cited by: 168
Author(s): Marie‐Paule Lefranc
Software Mentions: 2
Published: almost 13 years ago

10.26508/lsa.202000776

Structure of human Dispatched-1 provides insights into Hedgehog ligand biogenesis
Cited by: 22
Author(s): Hongwen Chen, Yang Liu, Xiaochun Li
Software Mentions: 2
Published: over 6 years ago

10.1038/srep11863

Structural insights into the unique inhibitory mechanism of the silkworm protease inhibitor serpin18
Cited by: 22
Author(s): Pengchao Guo, Zhaoming Dong, Yan Zhang, Huawei He, Xiang Tan, Weiwei Zhang, Qingyou Xia
Software Mentions: 2
Published: over 11 years ago

10.3389/fimmu.2019.01485

Key Features Relevant to Select Antigens and TCR From the MHC-Mismatched Repertoire to Treat Cancer
Cited by: 8
Author(s): Stefan Audehm, Manuel Glaser, Matteo Pecoraro, Eva Bräunlein, Sabine Mall, Klar Richard, Manuel Effenberger, Julian J Albers, Henrique Bianchi, Janet Kerstin Peper, Nahid Yusufi, Dirk H. Busch, Stefan Stevanović, Matthias Mann, Iris Antes, Angela M. Krackhardt
Software Mentions: 2
Published: over 7 years ago

10.1016/j.chom.2019.04.011

Conformational Plasticity in the HIV-1 Fusion Peptide Facilitates Recognition by Broadly Neutralizing Antibodies
Cited by: 38
Author(s): Meng Yuan, Christopher A. Cottrell, Gabriel Ozorowski, Marit J. van Gils, Sonu Kumar, Nicholas C. Wu, Achyut Sarkar, Jonathan L. Torres, Natalia de Val, Jeffrey Copps, John P. Moore, Rogier W. Sanders, Andrew B. Ward, Ian A. Wilson
Software Mentions: 2
Published: over 7 years ago

10.1016/j.bbapap.2017.08.005

Thermal sensitivity and flexibility of the Cε3 domains in immunoglobulin E
Cited by: 9
Author(s): K.A. Dore, Anna M. Davies, N. Drinkwater, Andrew J. Beavil, James M. McDonnell, Brian J. Sutton
Software Mentions: 2
Published: almost 9 years ago

10.1038/srep18462

Cancer associated missense mutations in BAP1 catalytic domain induce amyloidogenic aggregation: A new insight in enzymatic inactivation
Cited by: 38
Author(s): Sushmita Bhattacharya, Pranita Hanpude, Tushar Kanti Maiti
Software Mentions: 2
Published: almost 11 years ago

10.3389/fmed.2021.694668

Saudi Familial Hypercholesterolemia Patients With Rare LDLR Stop Gain Variant Showed Variable Clinical Phenotype and Resistance to Multiple Drug Regimen
Cited by: 6
Author(s): Zuhier Awan, Omran M. Rashidi, Bandar Ali Al-Shehri, Kaiser Jamil, Ramu Elango, Jumana Y. Al‐Aama, Robert A. Hegele, Noor Ahmad Shaik
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.659808

A MexR Mutation Which Confers Aztreonam Resistance to Pseudomonas aeruginosa
Cited by: 9
Author(s): Zhenzhen Ma, Congjuan Xu, Xinxin Zhang, Dan Wang, Xiaolei Pan, Huimin Liu, Guangbo Zhu, Fang Bai, Zhihui Cheng, Weihui Wu, Yongxin Jin
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.670681

Structural Basis of RICs Iron Donation for Iron-Sulfur Cluster Biogenesis
Cited by: 4
Author(s): Liliana S. O. Silva, Pedro M. Matías, Célia V. Romão, Lı́gia M. Saraiva
Software Mentions: 2
Published: over 5 years ago

10.26508/lsa.201900549

Initial phospholipid-dependent Irgb6 targeting to <i>Toxoplasma gondii</i> vacuoles mediates host defense
Cited by: 18
Author(s): Youngae Lee, Hiroshi Yamada, Ariel Pradipta, Ji Guo Su, Masaaki Okamoto, Hikaru Nagaoka, Eizo Takashima, Daron M. Standley, Miwa Sasai, Kohji Takei, Masahiro Yamamoto
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-017-14337-5

Structure based biophysical characterization of the PROPPIN Atg18 shows Atg18 oligomerization upon membrane binding
Cited by: 37
Author(s): Andreea Scacioc, Carla Schmidt, Tommy Hofmann, Henning Urlaub, Karin Kühnel, Ángel Pérez-Lara
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-15715-9

Crystal structure of the N-terminal domain of human CDC73 and its implications for the hyperparathyroidism-jaw tumor (HPT-JT) syndrome
Cited by: 19
Author(s): Wei Sun, Xiaolin Kuang, Yan-Ping Liu, Lu Tian, Xiaozhi Yan, Wenqing Xu
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-16427-w

Allosteric inhibitor remotely modulates the conformation of the orthestric pockets in mutant IDH2/R140Q
Cited by: 18
Author(s): Jiao Chen, Jie Yang, Xianqiang Sun, Zhongming Wang, Xiaolan Cheng, Wei Lü, Xueting Cai, Chunping Hu, Xu Shen, Peng Cao
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-16853-w

Kaempferide Prevents Titanium Particle Induced Osteolysis by Suppressing JNK Activation during Osteoclast Formation
Cited by: 31
Author(s): Zhipeng Jiao, Weifeng Xu, Jun Zheng, Pei Shen, An Qin, Sam Zhang, Yang Chen
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-16846-9

Combined genetic approaches yield a 48% diagnostic rate in a large cohort of French hearing-impaired patients
Cited by: 55
Author(s): David Baux, Christel Vaché, Christophe Blanchet, Marjolaine Willems, Claude Baudoin, Mélodie Moclyn, Valérie Faugère, Renaud Touraine, Bertrand Isidor, Delphine Dupin-Deguine, Mathilde Nizon, Marie‐Françoise Vincent, Sandra Mercier, C. Calais, Gema García‐García, Z. Azher, Linda M. Lambert, Yaumara Perdomo-Trujillo, Fabienne Giuliano, Mireille Claustres, M. Kœnig, M. Mondain, Anne‐Françoise Roux
Software Mentions: 2
Published: almost 9 years ago