10.1002/pro.3779

ConSurf‐DB: An accessible repository for the evolutionary conservation patterns of the majority of PDB proteins
Cited by: 74
Author(s): Adi Ben Chorin, Gal Masrati, Amit Kessel, Aya Narunsky, Josef Sprinzak, Shlomtzion Lahav, Haim Ashkenazy, Nir Ben‐Tal
Software Mentions: 2
Published: almost 7 years ago

10.1098/rsos.200844

Targeting the glycan of receptor binding domain with jacalin as a novel approach to develop a treatment against COVID-19
Cited by: 3
Author(s): Senthilnathan Rajendaran, Arunchalam Jothi, Anbazhagan Veerappan
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-017-01186-5

Small methyltransferase RlmH assembles a composite active site to methylate a ribosomal pseudouridine
Cited by: 12
Author(s): Cha San Koh, Rohini Madireddy, Timothy J. Beane, Phillip D. Zamore, А.A. Коростелев
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0209420

Deciphering the ATP-binding mechanism(s) in NLRP-NACHT 3D models using structural bioinformatics approaches
Cited by: 22
Author(s): Jitendra Maharana, Debashis Panda, Sachinandan De
Software Mentions: 2
Published: almost 8 years ago

10.1007/s13238-017-0405-7

The binding of a monoclonal antibody to the apical region of SCARB2 blocks EV71 infection
Cited by: 17
Author(s): Xuyuan Zhang, Yang Pan, Nan Wang, Jialong Zhang, Jingyun Li, Hao Guo, Xiangyun Yin, Zihe Rao, Xiangxi Wang, Liguo Zhang
Software Mentions: 2
Published: over 9 years ago

10.1007/s13238-016-0328-8

Structural insights into the recognition of phosphorylated FUNDC1 by LC3B in mitophagy
Cited by: 92
Author(s): Mengqi Lv, Chongyuan Wang, Fudong Li, Junhui Peng, Bin Wen, Qingguo Gong, Yunyu Shi, Yajun Tang
Software Mentions: 2
Published: almost 10 years ago

10.1007/s13238-018-0526-7

Cryo-EM structure of an early precursor of large ribosomal subunit reveals a half-assembled intermediate
Cited by: 59
Author(s): Danni Zhou, Xing Zhu, Sanduo Zheng, Dan Tan, Meng‐Qiu Dong, Keqiong Ye
Software Mentions: 2
Published: over 8 years ago

10.1007/s13238-015-0220-y

TIM-1 acts a dual-attachment receptor for Ebolavirus by interacting directly with viral GP and the PS on the viral envelope
Cited by: 40
Author(s): Shuai Yuan, Lei Cao, Hui Ling, Minghao Dang, Yao Sun, Xuyuan Zhang, Yutao Chen, Liguo Zhang, Dan Su, Xiangxi Wang, Zihe Rao
Software Mentions: 2
Published: almost 11 years ago

10.1007/s13238-015-0163-3

Insight into the Ebola virus nucleocapsid assembly mechanism: crystal structure of Ebola virus nucleoprotein core domain at 1.8 Å resolution
Cited by: 61
Author(s): Shishang Dong, Peng Yang, Guo‐Bang Li, Baocheng Liu, Wenming Wang, Xiang Liu, Xia Bo-ran, Cheng Yang, Zhiyong Lou, Yu Guo, Zihe Rao
Software Mentions: 2
Published: over 11 years ago

10.1007/s13238-016-0264-7

Structural insights into the regulatory mechanism of the Pseudomonas aeruginosa YfiBNR system
Cited by: 14
Author(s): Min Xu, Xuan Yang, Xiu‐An Yang, Lei Zhou, Liu Tie-zheng, Zusen Fan, Tao Jiang
Software Mentions: 2
Published: over 10 years ago

10.1007/s13238-018-0518-7

Solution structure of the RNA recognition domain of METTL3-METTL14 N6-methyladenosine methyltransferase
Cited by: 78
Author(s): Jinbo Huang, Dongyan Xu, Zhou Gong, Ling-Yun Qin, Shuai Yang, Yue-Ling Zhu, Xiang Wang, Delin Zhang, Tingting Zou, Ping Yin, Chun Tang
Software Mentions: 2
Published: over 8 years ago

10.1073/pnas.2021785118

Structure of SARS-CoV-2 ORF8, a rapidly evolving immune evasion protein
Cited by: 179
Author(s): Thomas G Flower, Cosmo Z. Buffalo, Richard M. Hooy, Marc Allaire, Xuefeng Ren, James H. Hurley
Software Mentions: 2
Published: almost 6 years ago

10.1073/pnas.2014896117

The SERCA residue Glu340 mediates interdomain communication that guides Ca ²⁺ transport
Cited by: 11
Author(s): Maxwell M. G. Geurts, Johannes Clausen, Bertrand Arnou, Cédric Montigny, Guillaume Lenoir, Robin A. Corey, Christine Jaxel, Jesper Møller, Poul Nissen, Jens Peter Andersen, Marc le Maire, Maike Bublitz
Software Mentions: 2
Published: almost 6 years ago

10.1073/pnas.2010644118

Structural basis for differential recognition of phosphohistidine-containing peptides by 1-pHis and 3-pHis monoclonal antibodies
Cited by: 12
Author(s): Rajasree Kalagiri, Robyn L. Stanfield, Jill Meisenhelder, James J. La Clair, Stephen R. Fuhs, Ian A. Wilson, Tony Hunter
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms21176153

The Structure of Clostridioides difficile SecA2 ATPase Exposes Regions Responsible for Differential Target Recognition of the SecA1 and SecA2-Dependent Systems
Cited by: 0
Author(s): Nataša Lindič, Jure Loboda, Aleksandra Usenik, Robert Vidmar, Dušan Turk
Software Mentions: 2
Published: about 6 years ago

10.1073/pnas.1911880116

Intrinsic elasticity of nucleosomes is encoded by histone variants and calibrated by their binding partners
Cited by: 37
Author(s): Daniël P. Melters, Mary Pitman, Tatini Rakshit, Emilios K. Dimitriadis, Minh Bui, Garegin A. Papoian, Yamini Dalal
Software Mentions: 2
Published: almost 7 years ago

10.1073/pnas.1901318116

Structure of KAP1 tripartite motif identifies molecular interfaces required for retroelement silencing
Cited by: 53
Author(s): Guido A. Stoll, Shun-ichiro Oda, Zheng-Shan Chong, Myeong-Hee Yu, Stephen H. McLaughlin, Yorgo Modis
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.37373

Evolution of cation binding in the active sites of P-loop nucleoside triphosphatases in relation to the basic catalytic mechanism
Cited by: 35
Author(s): Daria N. Shalaeva, Dmitry A. Cherepanov, Michael Y. Galperin, Andrey V. Golovin, Armen Y. Mulkidjanian
Software Mentions: 2
Published: almost 8 years ago

10.1073/pnas.2008176117

Genomic determinants of pathogenicity in SARS-CoV-2 and other human coronaviruses
Cited by: 184
Author(s): Ayal B. Gussow, Noam Auslander, Guilhem Faure, Yuri I. Wolf, Feng Zhang, Eugene V. Koonin
Software Mentions: 2
Published: over 6 years ago

10.1007/s13238-014-0087-3

Molecular mechanism of SCARB2-mediated attachment and uncoating of EV71
Cited by: 83
Author(s): Minghao Dang, Xiangxi Wang, Quan Wang, Yaxin Wang, Lin Jiao, Yuna Sun, Xuemei Li, Liguo Zhang, Zhiyong Lou, Junzhi Wang, Zihe Rao
Software Mentions: 2
Published: over 12 years ago

10.1093/protein/gzx044

Novel CH1:CL interfaces that enhance correct light chain pairing in heterodimeric bispecific antibodies
Cited by: 26
Author(s): Maximilian Bönisch, Carolin Sellmann, Daniel Maresch, Claudia Halbig, Stefan Becker, Lars Toleikis, Björn Hock, Florian Rüker
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-00917-y

A bacterial ABC transporter enables import of mammalian host glycosaminoglycans
Cited by: 21
Author(s): Shigetoshi Oiki, Bunzo Mikami, Yukie Maruyama, Kousaku Murata, Wataru Hashimoto
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.ppat.1009507

Structures of Foot-and-mouth Disease Virus with neutralizing antibodies derived from recovered natural host reveal a mechanism for cross-serotype neutralization
Cited by: 8
Author(s): Yang-Hui He, Kun Li, Yimei Cao, Zhenli Sun, Pinghua Li, Huang Bao, Sheng Wang, Guoqiang Zhu, Xingwen Bai, Pu Sun, Xuerong Liu, Cheng Yang, Zaixin Liu, Zengjun Lu, Zihe Rao, Zhiyong Lou
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1009393

ADAM17 is an essential attachment factor for classical swine fever virus
Cited by: 10
Author(s): Fei Yuan, Dandan Li, Changyao Li, Yanan Zhang, Hao Song, Suhua Li, Hongkui Deng, George F. Gao, Ai Zheng
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1009440

Toggle switch residues control allosteric transitions in bacterial adhesins by participating in a concerted repacking of the protein core
Cited by: 6
Author(s): Dagmara I. Kisiela, Pearl Magala, Gianluca Interlandi, Laura A. Carlucci, A.S. Ferreira Ramos, Veronika Tchesnokova, Benjamin Basanta, Vladimir Yarov‐Yarovoy, Hovhannes Avagyan, Անահիտ Հովհաննիսյան, Wendy E. Thomas, Ronald E. Stenkamp, Rachel E. Klevit, Evgeni V. Sokurenko
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1008794

Evolution-guided mutagenesis of the cytoplasmic incompatibility proteins: Identifying CifA’s complex functional repertoire and new essential regions in CifB
Cited by: 21
Author(s): J. Dylan Shropshire, Mahip Kalra, Seth R. Bordenstein
Software Mentions: 2
Published: about 6 years ago

10.6026/97320630017369

Molecular docking analysis of antimicrobial peptides with the CXCL1 protein target for colorectal cancer
Cited by: 2
Author(s): Praveen Kumar, P. Shanmughavel
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1008650

A Toxoplasma gondii patatin-like phospholipase contributes to host cell invasion
Cited by: 10
Author(s): Sarah K. Wilson, Justine Heckendorn, Bruno Martorelli Di Genova, Lindsey L. Koch, Peggy J. Rooney, Naomi S. Morrissette, Maryse Lebrun, Laura J. Knoll
Software Mentions: 2
Published: over 6 years ago

10.3390/molecules24213920

Screening of the Hepatotoxic Components in Fructus Gardeniae and Their Effects on Rat Liver BRL-3A Cells
Cited by: 20
Author(s): Chunnan Li, Meng Lan, Jima Lv, Ye Zhang, Xiaohuan Gao, Xu Gao, Lihua Dong, Guangsheng Luo, Hui Zhang, Jiaming Sun
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.ppat.1009329

Structural and functional studies of the first tripartite protein complex at the Trypanosoma brucei flagellar pocket collar
Cited by: 6
Author(s): Charlotte Isch, Paul Majneri, Nicolas Landrein, Yulia Pivovarova, Johannes Lesigang, Florian Lauruol, Derrick R. Robinson, Gang Dong, Mélanie Bonhivers
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.ppat.1007979

The TIR-domain containing effectors BtpA and BtpB from Brucella abortus impact NAD metabolism
Cited by: 39
Author(s): Julia María Coronas-Serna, Arthur Louche, María Rodríguez-Escudero, Morgane Roussin, Paul R. C. Imbert, Isabel Rodríguez-Escudero, Laurent Terradot, Marı́a Molina, Jean‐Pierre Gorvel, Víctor J. Cid, Suzana P. Salcedo
Software Mentions: 2
Published: over 6 years ago

10.3390/v13040663

Structural Characterization of a Minimal Antibody against Human APOBEC3B
Cited by: 1
Author(s): Heng Tang, Özlem Demir, Fredy Kurniawan, William L. Brown, Ke Shi, Nicholas H. Moeller, Michael A. Carpenter, Christopher Belica, Kayo Orellana, Guocheng Du, Aaron M. LeBeau, Rommie E. Amaro, Reuben S. Harris, Hideki Aihara
Software Mentions: 2
Published: over 5 years ago

10.1016/j.jbc.2021.101043

Catalytic mechanism of ancestral L-lysine oxidase assigned by sequence data mining
Cited by: 8
Author(s): Saiko Sugiura, Shogo Nakano, Masazumi Niwa, Fumihito Hasebe, Daisuke Matsui, Sohei Ito
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0196642

Structure of frequency-interacting RNA helicase from Neurospora crassa reveals high flexibility in a domain critical for circadian rhythm and RNA surveillance
Cited by: 9
Author(s): Yalemi Morales, Keith J. Olsen, Jacqueline M. Bulcher, Sean Johnson
Software Mentions: 2
Published: over 8 years ago

10.1016/j.jbc.2021.101001

Structural and functional analysis of gum arabic l-rhamnose-α-1,4-d-glucuronate lyase establishes a novel polysaccharide lyase family
Cited by: 3
Author(s): Tatsuya Kondo, Miyu Kichijo, Akiho Maruta, Makoto Nakaya, Shigeo Takenaka, T. Arakawa, Shinya Fushinobu, Tatsuji Sakamoto
Software Mentions: 2
Published: about 5 years ago

10.1016/j.bbabio.2015.07.002

Calcium-induced conformational changes in the regulatory domain of the human mitochondrial ATP-Mg/Pi carrier
Cited by: 34
Author(s): Steven P. D. Harborne, Jonathan J. Ruprecht, Edmund R. S. Kunji
Software Mentions: 2
Published: about 11 years ago

10.1016/j.jbc.2021.100957

The endopeptidase of the maize-affecting Marafivirus type member maize rayado fino virus doubles as a deubiquitinase
Cited by: 5
Author(s): Ankoor Patel, Jessica A.M. McBride, Brian L. Mark
Software Mentions: 2
Published: about 5 years ago

10.6026/97320630017212

Molecular docking of potential inhibitors with the mTOR protein
Cited by: 3
Author(s): Jh Shazia Fathima, Selvaraj Jayaraman, Venkatacalam Sivabalan, Umapathy Vidhya Rekha, Ponnulakshmi Rajagopal, V. Vishnupriya, Malathi Kullappan, Radhika Nalinakumari Sreekandan, Surapaneni Krishna Mohan, Periyasamy Vijayalakshmi
Software Mentions: 2
Published: over 5 years ago

10.15252/embr.201847182

Multiple C2 domains and transmembrane region proteins ( <scp>MCTP</scp> s) tether membranes at plasmodesmata
Cited by: 78
Author(s): Marie Brault, J.P. Petit, Françoise Immel, William J Nicolas, Marie Glavier, Lysiane Brocard, Amèlia Gaston, Mathieu Fouché, Timothy J. Hawkins, Jean-Marc Crowet, Magali Grison, V. Germain, Marion Rocher, Max Kraner, Vikram Alva, Stéphane Claverol, Andrea Paterlini, Yrjö Helariutta, Magali Deleu, Laurence Lins, Jens Tilsner, Emmanuelle Bayer
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pcbi.1000923

Correlated Mutations: A Hallmark of Phenotypic Amino Acid Substitutions
Cited by: 52
Author(s): Andreas Kowarsch, Angelika Fuchs, Dmitrij Frishman, Philipp Pagel
Software Mentions: 2
Published: about 16 years ago

10.1016/j.jbc.2021.101031

Epistatic interactions promote persistence of NS3-Q80K in HCV infection by compensating for protein folding instability
Cited by: 1
Author(s): G. Dultz, Sanjay Kumar Srikakulam, Michael Konetschnik, Tetsuro Shimakami, Nadezhda T. Doncheva, Julia Dietz, Christoph Sarrazin, Ricardo M. Biondi, Stefan Zeuzem, Robert Tampé, Olga Kalinina, Christoph Welsch
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.ppat.1008652

A secreted LysM effector protects fungal hyphae through chitin-dependent homodimer polymerization
Cited by: 38
Author(s): Andrea Sánchez‐Vallet, Hui Tian, Luis Rodríguez‐Moreno, D.J. Valkenburg, Raspudin Saleem-Batcha, Stephan Wawra, Anja Kombrink, Leonie Verhage, Ronnie de Jonge, H. Peter van Esse, Alga Zuccaro, Daniel Croll, J.R. Mesters, B.P.H.J. Thomma
Software Mentions: 2
Published: over 6 years ago

10.1093/bioinformatics/bty474

BioStructMap: a Python tool for integration of protein structure and sequence-based features
Cited by: 9
Author(s): Andrew Guy, Vashti Irani, Jack S. Richards, Paul A. Ramsland
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0130888

Molecular Details of Olfactomedin Domains Provide Pathway to Structure-Function Studies
Cited by: 16
Author(s): Shannon E. Hill, Rebecca K. Donegan, Elaine Nguyen, Tanay M. Desai, Raquel L. Lieberman
Software Mentions: 2
Published: over 11 years ago

10.1016/j.jbc.2021.100823

Structures of the alkanesulfonate monooxygenase MsuD provide insight into C–S bond cleavage, substrate scope, and an unexpected role for the tetramer
Cited by: 5
Author(s): Jeremy Liew, Israa M. El Saudi, S. Nguyen, Denyce K. Wicht, Daniel Dowling
Software Mentions: 2
Published: over 5 years ago

10.1016/j.jbc.2021.100713

The mycobacterial proteasomal ATPase Mpa forms a gapped ring to engage the 20S proteasome
Cited by: 3
Author(s): Yuanyuan Yin, Amanda Kovach, Hao-Chi Hsu, K. Heran Darwin, Huilin Li
Software Mentions: 2
Published: almost 6 years ago

10.1016/j.jbc.2021.100857

Oxalate decarboxylase uses electron hole hopping for catalysis
Cited by: 5
Author(s): Anthony J. Pastore, Ruijie D. Teo, Alvaro Montoya, M.J. Burg, Umar T. Twahir, Steven D. Bruner, David N. Beratan, Alexander Angerhofer
Software Mentions: 2
Published: over 5 years ago

10.1016/j.jbc.2021.100441

Molecular basis of tail-anchored integral membrane protein recognition by the cochaperone Sgt2
Cited by: 14
Author(s): Ku-Feng Lin, Michelle Y. Fry, Shyam Saladi, William M. Clemons
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pgen.1004533

The TRIM-NHL Protein LIN-41 Controls the Onset of Developmental Plasticity in Caenorhabditis elegans
Cited by: 59
Author(s): Cristina Tocchini, J.J. Keusch, Sarah Miller, Susanne Finger, H. Gut, Michael Stadler, Rafal Ciosk
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pgen.1009791

A lipoprotein allosterically activates the CwlD amidase during Clostridioides difficile spore formation
Cited by: 7
Author(s): Carolina Alves Feliciano, B.E. Eckenroth, Oscar R. Diaz, Sylvie Doublié, Aimee Shen
Software Mentions: 2
Published: about 5 years ago

10.6026/97320630013086

Epitope design of L1 protein for vaccine production against Human Papilloma Virus types 16 and 18
Cited by: 8
Author(s): Sunanda Baidya, Rasel Das, Md. Golam Kabir, Md. Arifuzzaman
Software Mentions: 2
Published: over 9 years ago

10.1016/j.jbc.2021.100506

Structural basis for the DNA-binding activity of human ARID4B Tudor domain
Cited by: 7
Author(s): Jie Ren, Hongwei Yao, Wanhui Hu, Sarah Perrett, Weibin Gong, Yingang Feng
Software Mentions: 2
Published: almost 6 years ago

10.1016/j.jbc.2021.100912

Cryo-EM reveals conformational flexibility in apo DNA polymerase ζ
Cited by: 4
Author(s): Chloe D. Truong, Theodore A. Craig, Gaofeng Cui, Maria Victoria Botuyan, Rachel A. Serkasevich, Kayi Y. Chan, Georges Mer, Po-Lin Chiu, Rajiv Kumar
Software Mentions: 2
Published: about 5 years ago

10.1074/jbc.REV120.011985

Regulation of translation by one-carbon metabolism in bacteria and eukaryotic organelles
Cited by: 18
Author(s): Sunil Shetty, Umesh Varshney
Software Mentions: 2
Published: almost 6 years ago

10.1074/jbc.RA120.016313

Active site metals mediate an oligomeric equilibrium in Plasmodium M17 aminopeptidases
Cited by: 2
Author(s): Tess R. Malcolm, Matthew J. Belousoff, Hariprasad Venugopal, Natalie A. Borg, N. Drinkwater, Sarah C. Atkinson, Sheena McGowan
Software Mentions: 2
Published: almost 6 years ago

10.1016/j.jbc.2021.100286

Pantoea stewartii WceF is a glycan biofilm-modifying enzyme with a bacteriophage tailspike-like fold
Cited by: 5
Author(s): Tobias Irmscher, Yvette Roske, Igor Gayk, Valentin Dunsing, Salvatore Chiantia, Udo Heinemann, Stefanie Barbirz
Software Mentions: 2
Published: almost 6 years ago

10.1074/jbc.RA120.015050

KPC-2 β-lactamase enables carbapenem antibiotic resistance through fast deacylation of the covalent intermediate
Cited by: 11
Author(s): Shrenik Mehta, I. Furey, O.A. Pemberton, David M. Boragine, Yu Chen, Timothy Palzkill
Software Mentions: 2
Published: almost 6 years ago

10.1074/jbc.RA119.012372

S-Glutathionylation of human inducible Hsp70 reveals a regulatory mechanism involving the C-terminal α-helical lid
Cited by: 20
Author(s): Jie Yang, Hong Zhang, Weibin Gong, Zhenyan Liu, Hui‐Wen Wu, Wanhui Hu, Xinxin Chen, Lei Wang, Si Wu, Chang Chen, Sarah Perrett
Software Mentions: 2
Published: over 6 years ago

10.1074/jbc.RA120.014924

Evolving the naturally compromised chorismate mutase from Mycobacterium tuberculosis to top performance
Cited by: 8
Author(s): Jūrate ̇ Fahrig-Kamarauskait≑, Kathrin Würth-Roderer, Helen V. Thorbjørnsrud, Susanne Mailand, Ute Krengel, Peter Kast
Software Mentions: 2
Published: almost 6 years ago

10.1074/jbc.RA120.015951

The bacterial cell division protein fragment EFtsN binds to and activates the major peptidoglycan synthase PBP1b
Cited by: 15
Author(s): Adrien Boes, Frédéric Kerff, R. Herman, Thierry Touzé, Eefjan Breukink, Mohammed Terrak
Software Mentions: 2
Published: almost 6 years ago

10.1016/j.jbc.2021.100307

Structural basis of trehalose recognition by the mycobacterial LpqY-SugABC transporter
Cited by: 9
Author(s): Christopher M. Furze, Ignacio Delso, Enriqueta Casal, Collette S. Guy, Chloe Seddon, Chelsea M. Brown, Hadyn L. Parker, Anjana Radhakrishnan, Raúl Pacheco-Gómez, Phillip J. Stansfeld, Jesús Angulo, Alexander D. Cameron, Elizabeth Fullam
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-017-01057-z

Structural investigations on orotate phosphoribosyltransferase from Mycobacterium tuberculosis, a key enzyme of the de novo pyrimidine biosynthesis
Cited by: 22
Author(s): Stefano Donini, Davide M. Ferraris, Riccardo Miggiano, Alberto Massarotti, Menico Rizzi
Software Mentions: 2
Published: over 9 years ago

10.1074/jbc.RA119.010486

Moonlighting matrix metalloproteinase substrates: Enhancement of proinflammatory functions of extracellular tyrosyl-tRNA synthetase upon cleavage
Cited by: 14
Author(s): Parker G. Jobin, Nestor Solis, Yoan Machado, Peter A. Bell, K. Simran, Nam Hoon Kwon, Sung Hoon Kim, Christopher M. Overall, Georgina S. Butler
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0218210

Plasmodium falciparum glutamate dehydrogenase is genetically conserved across eight malaria endemic states of India: Exploring new avenues of malaria elimination
Cited by: 9
Author(s): Amreen Ahmad, Anil Verma, Sri Krishna, Anjana Sharma, Neeru Singh, Praveen K. Bharti
Software Mentions: 2
Published: over 7 years ago

10.1074/jbc.RA120.012636

MutT homologue 1 (MTH1) removes N6-methyl-dATP from the dNTP pool
Cited by: 9
Author(s): Emma Rose Scaletti, Karl S. A. Vallin, Lars Bräutigam, Antonio Sarno, Ulrika Warpman Berglund, Thomas Helleday, Pål Stenmark, Ann-Sofie Jemth
Software Mentions: 2
Published: over 6 years ago

10.3390/genes12010122

A Novel Carboxylesterase Derived from a Compost Metagenome Exhibiting High Stability and Activity towards High Salinity
Cited by: 9
Author(s): Mi Lu, Rolf Daniel
Software Mentions: 2
Published: over 5 years ago

10.6026/97320630013366

In Silico Validation of D7 Salivary Protein-derived B- and T-cell Epitopes of Aedes aegypti as Potential Vaccine to Prevent Transmission of Flaviviruses and Togaviruses to Humans
Cited by: 5
Author(s): Sathish Sankar, Mageshbabu Ramamurthy, Balaji Nandagopal, Gopalan Sridharan
Software Mentions: 2
Published: almost 9 years ago

10.3390/genes10060421

Engineering CatM, a LysR-Type Transcriptional Regulator, to Respond Synergistically to Two Effectors
Cited by: 9
Author(s): Melissa Tumen-Velasquez, Nicole S. Laniohan, Cory Momany, Ellen L. Neidle
Software Mentions: 2
Published: over 7 years ago

10.1074/jbc.RA119.008610

Alternative folding to a monomer or homopolymer is a common feature of the type 1 pilus subunit FimA from enteroinvasive bacteria
Cited by: 7
Author(s): Dawid Zyla, A.E. Prota, Guido Capitani, Rudi Glockshuber
Software Mentions: 2
Published: over 7 years ago

10.3389/fvets.2020.00534

Novel Genotype Definition and the First Epidemiological Investigation of Canine Adenovirus Type 2 in Dogs in Central China
Cited by: 6
Author(s): Jun Ji, Wanyu Li, Wen Hu, Xin Xu, Yunchao Kan, Lunguang Yao, Yingzuo Bi, Qingmei Xie
Software Mentions: 2
Published: about 6 years ago

10.3389/fpubh.2021.633792

Evolutionary Analysis of Pre-S/S Mutations in HBeAg-Negative Chronic Hepatitis B With HBsAg &lt; 100 IU/ml
Cited by: 3
Author(s): Yongdong Wu, Zhiqiang Zhu, Jiang Wu, Wenzi Bi, Wei Xu, Xiaoping Xia, Dongsheng Han
Software Mentions: 2
Published: over 5 years ago

10.1186/s43094-021-00348-7

Computational guided identification of potential leads from Acacia pennata (L.) Willd. as inhibitors for cellular entry and viral replication of SARS-CoV-2
Cited by: 16
Author(s): James H. Zothantluanga, Neelutpal Gogoi, Anshul Shakya, Dipak Chetia, H. Lalthanzara
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2013.00430

S-nitrosoglutathione reductases are low-copy number, cysteine-rich proteins in plants that control multiple developmental and defense responses in Arabidopsis
Cited by: 89
Author(s): Shengbao Xu, Damian D. Guerra, Ung Lee, Elizabeth Vierling
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0160165

Insight on Mutation-Induced Resistance from Molecular Dynamics Simulations of the Native and Mutated CSF-1R and KIT
Cited by: 8
Author(s): Priscila da Silva Figueiredo Celestino Gomes, Isaure Chauvot de Beauchêne, Nicolas Panel, Sophie Lopez, Paulo De Sepulveda, Pedro Geraldo Pascutti, Éric Solary, Luba Tchertanov
Software Mentions: 2
Published: about 10 years ago

10.6026/97320630017337

Differential binding of SARS-CoV-2 Spike protein variants to its cognate receptor hACE2 using molecular modeling based binding analysis
Cited by: 2
Author(s): Anuja Krishnan
Software Mentions: 2
Published: over 5 years ago

10.1074/jbc.RA120.013316

The major subunit of widespread competence pili exhibits a novel and conserved type IV pilin fold
Cited by: 16
Author(s): Devon Sheppard, Jamie-Lee Berry, Rémi Denise, Eduardo P. C. Rocha, Steve Matthews, Vladimir Pelicic
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0252786

DNAH11 compound heterozygous variants cause heterotaxy and congenital heart disease
Cited by: 5
Author(s): Xia Hong, Xiangjun Huang, Sheng Deng, Hongbo Xu, Yan Yang, Xin Liu, Lamei Yuan, Hao Deng
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2021.667988

A Combined Morphological and Molecular Evolutionary Analysis of Karst-Environment Adaptation for the Genus Urophysa (Ranunculaceae)
Cited by: 3
Author(s): Deng-Feng Xie, Rui-Yu Cheng, Xiao Wen Fu, Xiangyi Zhang, Megan Price, Yanling Lan, Changbao Wang, Xing‐Jin He
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2017.01878

Novel Ribonuclease Activity Differs between Fibrillarins from Arabidopsis thaliana
Cited by: 9
Author(s): Ulises Rodríguez-Corona, Alejandro Pereira-Santana, Margarita Sobol, Luis Carlos Rodríguez-Zapata, Pavel Hozák, Enrique Castaño
Software Mentions: 2
Published: almost 9 years ago

10.3389/fpls.2019.01657

A LysR-Type Transcriptional Regulator LcrX Is Involved in Virulence, Biofilm Formation, Swimming Motility, Siderophore Secretion, and Growth in Sugar Sources in Xanthomonas axonopodis Pv. glycines
Cited by: 14
Author(s): Hanbi Park, Eunsoo Do, Minyoung Kim, Hye-Jee Park, Jong-Chan Lee, Sang-Wook Han
Software Mentions: 2
Published: almost 7 years ago

10.3390/v12050508

Genomic Analyses of Potential Novel Recombinant Human Adenovirus C in Brazil
Cited by: 6
Author(s): Roozbeh Tahmasebi, Antônio Charlys da Costa, Kaelan Tardy, Rory J Tinker, Flávio Augusto de Pádua Milagres, Rafael Brustulin, Maria da Aparecida Rodrigues Teles, Rogério Togisaki das Chagas, Cássia Vitória de Deus Alves Soares, Aripuanã Sakurada Aranha Watanabe, Cecília Salete Alencar, Fabiola Villanova, Xutao Deng, Eric Delwart, Adriana Luchs, Élcio Leal, Éster Cerdeira Sabino
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2019.01229

Crystal Structure Of Photorespiratory Alanine:Glyoxylate Aminotransferase 1 (AGT1) From Arabidopsis thaliana
Cited by: 9
Author(s): Aaron H. Liepman, J. Vijayalakshmi, Daniel Peisach, Brian Hulsebus, Laura J. Olsen, Mark A. Saper
Software Mentions: 2
Published: about 7 years ago

10.3389/fpls.2021.679654

E183K Mutation in Chalcone Synthase C2 Causes Protein Aggregation and Maize Colorless
Cited by: 3
Author(s): Han Dong, Ling He, Yingjie Xue, Shengzhong Su, Shipeng Li, Xiuming Shan, Hongkui Liu, Nan Jiang, Xuyang Wu, Zhiwu Zhang, Yaping Yuan
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2018.01942

Look and Outlook on Enzyme-Mediated Macrolide Resistance
Cited by: 66
Author(s): Tolou Golkar, Michał Zieliński, A.M. Berghuis
Software Mentions: 2
Published: about 8 years ago

10.3390/v12040387

The In Silico Prediction of Hotspot Residues that Contribute to the Structural Stability of Subunit Interfaces of a Picornavirus Capsid
Cited by: 2
Author(s): Nicole Upfold, Caroline Jane Ross, Özlem Tastan Bishop, Caroline Knox
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2019.02079

A Unique Homo-Hexameric Structure of 2-Aminomuconate Deaminase in the Bacterium Pseudomonas species AP–3
Cited by: 3
Author(s): Yanjuan Chen, Yiping Chen, Hua Jiang, Deren Lu, Tingting Hu, Gang Bi, Yuping Ran, Bin Yu, Hao Dong, Dan Su
Software Mentions: 2
Published: about 7 years ago

10.1093/bioinformatics/btaa170

The Glycine Receptor Allosteric Ligands Library (GRALL)
Cited by: 13
Author(s): Adrien H. Cerdan, Marion Sisquellas, Gilberto Pereira, Diego E. B. Gomes, Jean‐Pierre Changeux, Marco Cecchini
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2020.598789

Isolation, Characterization and Structure Elucidation of a Novel Lantibiotic From Paenibacillus sp.
Cited by: 10
Author(s): Jerzy Karczewski, Stephen P Krasucki, Papa Nii Asare‐Okai, Carl Diehl, Andrew Friedman, C. M. Brown, Yukari Maezato, Stephen J. Streatfield
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2021.630293

Generation of Tetracycline and Rifamycin Resistant Chlamydia Suis Recombinants
Cited by: 3
Author(s): H. R. Marti, Sankhya Bommana, Timothy D. Read, Theresa Pesch, Barbara Prähauser, Deborah Dean, Nicole Borel
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2017.02385

Structure–Function Relationship of Aminopeptidase P from Pseudomonas aeruginosa
Cited by: 11
Author(s): Peng Cheng, Li Liu, Changcheng Li, Libang He, Tao Li, Yanjiao Shen, Chao Gao, Ningyu Wang, Yong Xia, Yuanfeng Zhu, Yingjie Song, Qian Lei, Luoting Yu, Rui Bao
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2018.00649

Mechanistic and Structural Insights Into the Unique TetR-Dependent Regulation of a Drug Efflux Pump in Mycobacterium abscessus
Cited by: 24
Author(s): Matthias Richard, Ana Victoria Gutiérrez, Albertus Viljoen, Éric Ghigo, Mickaël Blaise, Laurent Kremer
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pgen.1002484

Structural Basis of Transcriptional Gene Silencing Mediated by Arabidopsis MOM1
Cited by: 22
Author(s): Takehiro Nishimura, Guillaume Molinard, Tom J. Petty, Larissa Broger, Caroline Gabus, Thanos D. Halazonetis, Stéphane Thore, Jerzy Paszkowski
Software Mentions: 2
Published: over 14 years ago

10.3389/fphys.2013.00315

A comparative study of Whi5 and retinoblastoma proteins: from sequence and structure analysis to intracellular networks
Cited by: 14
Author(s): M. M. Hasan, Stefania Brocca, Elena Sacco, Michela Spinelli, Elena Papaleo, Matteo Lambrughi, Lilia Alberghina, Marco Vanoni
Software Mentions: 2
Published: almost 13 years ago

10.3389/fphys.2017.00202

Improved Model of Proton Pump Crystal Structure Obtained by Interactive Molecular Dynamics Flexible Fitting Expands the Mechanistic Model for Proton Translocation in P-Type ATPases
Cited by: 26
Author(s): Dorota Focht, Tristan I. Croll, Bjørn Panyella Pedersen, Poul Nissen
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2018.01925

Characterization of ML-005, a Novel Metaproteomics-Derived Esterase
Cited by: 6
Author(s): Premankur Sukul, Natalie Lupilov, Lars I. Leichert
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2021.670681

Structural Basis of RICs Iron Donation for Iron-Sulfur Cluster Biogenesis
Cited by: 4
Author(s): Liliana S. O. Silva, Pedro M. Matías, Célia V. Romão, Lı́gia M. Saraiva
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2018.00371

Intrahost Norovirus Evolution in Chronic Infection Over 5 Years of Shedding in a Kidney Transplant Recipient
Cited by: 12
Author(s): Andrej Steyer, Tilen Konte, Martin Sagadin, Marko Kolenc, Andrej Škoberne, Julija Germ, Tadeja Dovč-Drnovšek, Miha Arnol, Mateja Poljšak-Prijatelj
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2018.00963

The Binding Mechanism Between Inositol Phosphate (InsP) and the Jasmonate Receptor Complex: A Computational Study
Cited by: 9
Author(s): Mengqi Cui, Juan Du, Xiaojun Yao
Software Mentions: 2
Published: about 8 years ago

10.3389/fpls.2019.00880

Plant-Made Nervous Necrosis Virus-Like Particles Protect Fish Against Disease
Cited by: 26
Author(s): Johanna Marsian, Daniel L. Hurdiss, Neil A. Ranson, Anneli Ritala, Richard Paley, Irene Cano, George P. Lomonossoff
Software Mentions: 2
Published: over 7 years ago

10.1074/jbc.RA119.011630

Characterization of the structure and interactions of P450 BM3 using hybrid mass spectrometry approaches
Cited by: 7
Author(s): Laura N. Jeffreys, Kamila J. Pacholarz, Linus O. Johannissen, Hazel M. Girvan, Perdita E. Barran, Michael W. Voice, Andrew W. Munro
Software Mentions: 2
Published: over 6 years ago