10.1038/s41598-017-00917-y

A bacterial ABC transporter enables import of mammalian host glycosaminoglycans
Cited by: 21
Author(s): Shigetoshi Oiki, Bunzo Mikami, Yukie Maruyama, Kousaku Murata, Wataru Hashimoto
Software Mentions: 2
Published: about 9 years ago

10.3390/vaccines9090986

Multiepitope Proteins for the Differential Detection of IgG Antibodies against RBD of the Spike Protein and Non-RBD Regions of SARS-CoV-2
Cited by: 7
Author(s): Larissa Rodrigues Gomes, Andressa da Matta Durans, Paloma Napoleão-Pêgo, Jessica A. Waterman, Mariana S. Freitas, Nathalia Beatriz Ramos de Sá, Lilian V. Pereira, Jéssica S. Furtado, Romário G. Aquino, Mario C. R. Machado, Natalia Fintelman‐Rodrigues, Thiago Moreno L. Souza, Carlos Médicis Morel, David William Provance, Salvatore Giovanni De-Simone
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-017-03220-y

Bacterial protease uses distinct thermodynamic signatures for substrate recognition
Cited by: 13
Author(s): G.A. Bezerra, Yuko Ohara‐Nemoto, Irina Cornaciu, Sofiya Fedosyuk, Guillaume Hoffmann, Adam Round, José Antonio Márquez, Takayuki Nemoto, Kristina Djinović-Carugo
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-01705-4

Structural analysis of the regulatory mechanism of MarR protein Rv2887 in M. tuberculosis
Cited by: 16
Author(s): Yunrong Gao, Defeng Li, Joy Fleming, Ya‐Feng Zhou, Ying Liu, Jiao-Yu Deng, Lin Zhou, Jie Zhou, Guofeng Zhu, Xian-En Zhang, Dacheng Wang, Lijun Bi
Software Mentions: 2
Published: almost 9 years ago

10.1038/srep42711

Structural basis for fragmenting the exopolysaccharide of Acinetobacter baumannii by bacteriophage ΦAB6 tailspike protein
Cited by: 37
Author(s): I‐Ming Lee, I-Fan Tu, Yang Fu, Tzu‐Ping Ko, Jiahn-Haur Liao, Ning Lin, Chung‐Yi Wu, Chien‐Tai Ren, Andrew H.‐J. Wang, Ching-Ming Chang, Kai‐Fa Huang, Shih‐Hsiung Wu
Software Mentions: 2
Published: over 9 years ago

10.1016/j.celrep.2016.06.022

Structural Insights into Arl1-Mediated Targeting of the Arf-GEF BIG1 to the trans-Golgi
Cited by: 25
Author(s): Antonio Galindo, Nicolas Soler, Stephen H. McLaughlin, Myeong-Hee Yu, Roger L. Williams, Sean Munro
Software Mentions: 2
Published: about 10 years ago

10.1038/srep41487

Identification of a novel selective PPARγ ligand with a unique binding mode and improved therapeutic profile in vitro
Cited by: 15
Author(s): Wei Yi, Jingjing Shi, Guanguan Zhao, Xuemei Zhou, Kelly Suino-Powell, Karsten Melcher, H. Eric Xu
Software Mentions: 2
Published: over 9 years ago

10.1038/srep43318

ACCORD: an assessment tool to determine the orientation of homodimeric coiled-coils
Cited by: 6
Author(s): Byeong Won Kim, Yang Ouk Jung, Min Kyung Kim, Do Hoon Kwon, Si Hoon Park, Jun Hoe Kim, Yong Boo Kuk, Sun Joo Oh, Leehyeon Kim, Bong Heon Kim, Woo Seok Yang, Hyun Kyu Song
Software Mentions: 2
Published: over 9 years ago

10.1098/rsos.200844

Targeting the glycan of receptor binding domain with jacalin as a novel approach to develop a treatment against COVID-19
Cited by: 3
Author(s): Senthilnathan Rajendaran, Arunchalam Jothi, Anbazhagan Veerappan
Software Mentions: 2
Published: almost 6 years ago

10.1002/pro.3879

Structural and chemical trapping of flavin‐oxide intermediates reveals substrate‐directed reaction multiplicity
Cited by: 3
Author(s): Kuan‐Hung Lin, S.Y. Lyu, Hsien‐Wei Yeh, Yi‐Shan Li, Ning‐Shian Hsu, Chun‐Man Huang, Yung‐Lin Wang, Han C. Shih, Zhe‐Chong Wang, Changshan Wu, Tsung‐Lin Li
Software Mentions: 2
Published: about 6 years ago

10.1002/prot.26018

<scp>PDB‐tools</scp> web: A user‐friendly interface for the manipulation of <scp>PDB</scp> files
Cited by: 12
Author(s): Brian Jiménez‐García, João M.C. Teixeira, Mikaël Trellet, João P. G. L. M. Rodrigues, Alexandre M. J. J. Bonvin
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.06562

Cooperative base pair melting by helicase and polymerase positioned one nucleotide from each other
Cited by: 33
Author(s): Divya Nandakumar, Manjula Pandey, Smita S. Patel
Software Mentions: 2
Published: about 11 years ago

10.1038/srep44341

Characterization of long and stable de novo single alpha-helix domains provides novel insight into their stability
Cited by: 36
Author(s): Marcin Wolny, Matthew Batchelor, Gail J. Bartlett, Emily G. Baker, Marta Kurzawa, Peter J. Knight, Lorna Dougan, Derek N. Woolfson, Emanuele Paci, Michelle Peckham
Software Mentions: 2
Published: over 9 years ago

10.1002/pro.3779

ConSurf‐DB: An accessible repository for the evolutionary conservation patterns of the majority of PDB proteins
Cited by: 74
Author(s): Adi Ben Chorin, Gal Masrati, Amit Kessel, Aya Narunsky, Josef Sprinzak, Shlomtzion Lahav, Haim Ashkenazy, Nir Ben‐Tal
Software Mentions: 2
Published: over 6 years ago

10.1002/pro.3628

Function and solution structure of the <scp> <i>Arabidopsis thaliana</i> </scp> RALF8 peptide
Cited by: 10
Author(s): Ronnie O. Frederick, Miyoshi Haruta, Marco Tonelli, Woonghee Lee, Gabriel Cornilescu, Claudia C. Cornilescu, Michael R. Sussman, John L. Markley
Software Mentions: 2
Published: about 7 years ago

10.1002/pro.3732

Pharmmaker: Pharmacophore modeling and hit identification based on druggability simulations
Cited by: 17
Author(s): Ji Young Lee, James Krieger, Hongchun Li, İvet Bahar
Software Mentions: 2
Published: over 6 years ago

10.1007/s13238-018-0526-7

Cryo-EM structure of an early precursor of large ribosomal subunit reveals a half-assembled intermediate
Cited by: 59
Author(s): Danni Zhou, Xing Zhu, Sanduo Zheng, Dan Tan, Meng‐Qiu Dong, Keqiong Ye
Software Mentions: 2
Published: over 8 years ago

10.1007/s13238-016-0264-7

Structural insights into the regulatory mechanism of the Pseudomonas aeruginosa YfiBNR system
Cited by: 14
Author(s): Min Xu, Xuan Yang, Xiu‐An Yang, Lei Zhou, Liu Tie-zheng, Zusen Fan, Tao Jiang
Software Mentions: 2
Published: about 10 years ago

10.1007/s13238-018-0518-7

Solution structure of the RNA recognition domain of METTL3-METTL14 N6-methyladenosine methyltransferase
Cited by: 78
Author(s): Jinbo Huang, Dongyan Xu, Zhou Gong, Ling-Yun Qin, Shuai Yang, Yue-Ling Zhu, Xiang Wang, Delin Zhang, Tingting Zou, Ping Yin, Chun Tang
Software Mentions: 2
Published: over 8 years ago

10.1002/pro.3120

Structural and functional insights into thermally stable cytochrome <i>c</i>′ from a thermophile
Cited by: 14
Author(s): Sotaro Fujii, Hiroya Oki, Kazuki Kawahara, Daisuke Yamane, Masahito Yamanaka, Takahiro Maruno, Yuji Kobayashi, Misa Masanari, Satoshi Wakai, Hirofumi Nishihara, Tadayasu Ohkubo, Yoshihiro Sambongi
Software Mentions: 2
Published: over 9 years ago

10.1038/srep45224

Probing Medin Monomer Structure and its Amyloid Nucleation Using 13C-Direct Detection NMR in Combination with Structural Bioinformatics
Cited by: 10
Author(s): Hannah A. Davies, Daniel J. Rigden, Marie M. Phelan, Jillian Madine
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-06575-4

Predicting the functional consequences of non-synonymous single nucleotide polymorphisms in IL8 gene
Cited by: 70
Author(s): Tikam Chand Dakal, Deepak Kala, Gourav Dhiman, Vinod Kumar Yadav, A. Krokhotin, Nikolay V. Dokholyan
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-020-62460-7

The First 3D Model of the Full-Length KIT Cytoplasmic Domain Reveals a New Look for an Old Receptor
Cited by: 7
Author(s): François Inizan, Myriam Hanna, Maxim Stolyarchuk, Isaure Chauvot de Beauchêne, Luba Tchertanov
Software Mentions: 2
Published: over 6 years ago

10.1073/pnas.2010644118

Structural basis for differential recognition of phosphohistidine-containing peptides by 1-pHis and 3-pHis monoclonal antibodies
Cited by: 12
Author(s): Rajasree Kalagiri, Robyn L. Stanfield, Jill Meisenhelder, James J. La Clair, Stephen R. Fuhs, Ian A. Wilson, Tony Hunter
Software Mentions: 2
Published: over 5 years ago

10.1073/pnas.2006231117

Structural mechanism of helicase loading onto replication origin DNA by ORC-Cdc6
Cited by: 35
Author(s): Ziming Yuan, Sarah Schneider, Thomas Dodd, Alberto Riera, Lin Bai, Yan Cheng, Marta Barbon, Indiana Magdalou, Ivaylo Ivanov, Bruce Stillman, Li H, Christian Speck
Software Mentions: 2
Published: almost 6 years ago

10.1007/s13238-014-0087-3

Molecular mechanism of SCARB2-mediated attachment and uncoating of EV71
Cited by: 83
Author(s): Minghao Dang, Xiangxi Wang, Quan Wang, Yaxin Wang, Lin Jiao, Yuna Sun, Xuemei Li, Liguo Zhang, Zhiyong Lou, Junzhi Wang, Zihe Rao
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0123195

An Unexpected Mode Of Binding Defines BMS948 as A Full Retinoic Acid Receptor β (RARβ, NR1B2) Selective Agonist
Cited by: 12
Author(s): Nadendla EswarKumar, Catherine Teyssier, V. Delfosse, Valérie Vivat, Krishnasamy Gunasekaran, Hinrich Gronemeyer, William Bourguet, Pierre Germain
Software Mentions: 2
Published: about 11 years ago

10.1073/pnas.1911880116

Intrinsic elasticity of nucleosomes is encoded by histone variants and calibrated by their binding partners
Cited by: 37
Author(s): Daniël P. Melters, Mary Pitman, Tatini Rakshit, Emilios K. Dimitriadis, Minh Bui, Garegin A. Papoian, Yamini Dalal
Software Mentions: 2
Published: over 6 years ago

10.1111/mmi.14172

Organization and architecture of AggR-dependent promoters from enteroaggregative<i>Escherichia coli</i>
Cited by: 8
Author(s): Muhammad Yasir, Christopher Icke, Radwa Abdelwahab, James R. J. Haycocks, Rita E. Godfrey, Pavelas Sazinas, Mark J. Pallen, Ian R. Henderson, Stephen J. W. Busby, Douglas F. Browning
Software Mentions: 2
Published: over 7 years ago

10.1073/pnas.1901318116

Structure of KAP1 tripartite motif identifies molecular interfaces required for retroelement silencing
Cited by: 53
Author(s): Guido A. Stoll, Shun-ichiro Oda, Zheng-Shan Chong, Myeong-Hee Yu, Stephen H. McLaughlin, Yorgo Modis
Software Mentions: 2
Published: almost 7 years ago

10.1007/s13238-014-0038-z

Elimination of inter-domain interactions increases the cleavage fidelity of the restriction endonuclease DraIII
Cited by: 4
Author(s): Wei Zhuo, Xuhui Lai, Liqing Zhang, Siu-Hong Chan, Fengjuan Li, Zhenyu Zhu, Maojun Yang, Dapeng Sun
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.ppat.1009329

Structural and functional studies of the first tripartite protein complex at the Trypanosoma brucei flagellar pocket collar
Cited by: 6
Author(s): Charlotte Isch, Paul Majneri, Nicolas Landrein, Yulia Pivovarova, Johannes Lesigang, Florian Lauruol, Derrick R. Robinson, Gang Dong, Mélanie Bonhivers
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0039993

Analysis of Conformational Variation in Macromolecular Structural Models
Cited by: 6
Author(s): Sandeep Srivastava, S Gayathri, Babu A. Manjasetty, B. Gopal
Software Mentions: 2
Published: almost 14 years ago

10.1128/mBio.00605-21

Tryptophan Operon Diversity Reveals Evolutionary Trends among Geographically Disparate Chlamydia trachomatis Ocular and Urogenital Strains Affecting Tryptophan Repressor and Synthase Function
Cited by: 4
Author(s): Sankhya Bommana, Naraporn Somboonna, Gracie Richards, Maryam Tarazkar, Deborah Dean
Software Mentions: 2
Published: about 5 years ago

10.1111/j.1365-2958.2007.05753.x

Gene encoding a deubiquitinating enzyme is mutated in artesunate‐ and chloroquine‐resistant rodent malaria parasites^§
Cited by: 152
Author(s): Paul Hunt, Ana Afonso, Alison M. Creasey, Richard Culleton, Amar Bir Singh Sidhu, John G. Logan, Stephanie G. Valderramos, I.W. McNae, Sandra Cheesman, Virgı́lio do Rosário, Richard Carter, David A. Fidock, Pedro Vitor Lemos Cravo
Software Mentions: 2
Published: about 19 years ago

10.1371/journal.ppat.1009440

Toggle switch residues control allosteric transitions in bacterial adhesins by participating in a concerted repacking of the protein core
Cited by: 6
Author(s): Dagmara I. Kisiela, Pearl Magala, Gianluca Interlandi, Laura A. Carlucci, A.S. Ferreira Ramos, Veronika Tchesnokova, Benjamin Basanta, Vladimir Yarov‐Yarovoy, Hovhannes Avagyan, Անահիտ Հովհաննիսյան, Wendy E. Thomas, Ronald E. Stenkamp, Rachel E. Klevit, Evgeni V. Sokurenko
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0165917

Crystal Structures of Group B Streptococcus Glyceraldehyde-3-Phosphate Dehydrogenase: Apo-Form, Binary and Ternary Complexes
Cited by: 14
Author(s): Norbert Schormann, Chapelle A. Ayres, Fry Alexandra, Todd Green, Surajit Banerjee, Glen C. Ulett, Debasish Chattopadhyay
Software Mentions: 2
Published: over 9 years ago

10.3390/life11040346

Behavior of Chemokine Receptor 6 (CXCR6) in Complex with CXCL16 Soluble form Chemokine by Molecular Dynamic Simulations: General Protein‒Ligand Interaction Model and 3D-QSAR Studies of Synthetic Antagonists
Cited by: 4
Author(s): Giovanny Aguilera-Durán, Antonio Romo-Mancillas
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.ppat.1009507

Structures of Foot-and-mouth Disease Virus with neutralizing antibodies derived from recovered natural host reveal a mechanism for cross-serotype neutralization
Cited by: 8
Author(s): Yang-Hui He, Kun Li, Yimei Cao, Zhenli Sun, Pinghua Li, Huang Bao, Sheng Wang, Guoqiang Zhu, Xingwen Bai, Pu Sun, Xuerong Liu, Cheng Yang, Zaixin Liu, Zengjun Lu, Zihe Rao, Zhiyong Lou
Software Mentions: 2
Published: about 5 years ago

10.1007/s13238-015-0163-3

Insight into the Ebola virus nucleocapsid assembly mechanism: crystal structure of Ebola virus nucleoprotein core domain at 1.8 Å resolution
Cited by: 61
Author(s): Shishang Dong, Peng Yang, Guo‐Bang Li, Baocheng Liu, Wenming Wang, Xiang Liu, Xia Bo-ran, Cheng Yang, Zhiyong Lou, Yu Guo, Zihe Rao
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.ppat.1008650

A Toxoplasma gondii patatin-like phospholipase contributes to host cell invasion
Cited by: 10
Author(s): Sarah K. Wilson, Justine Heckendorn, Bruno Martorelli Di Genova, Lindsey L. Koch, Peggy J. Rooney, Naomi S. Morrissette, Maryse Lebrun, Laura J. Knoll
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.ppat.1007979

The TIR-domain containing effectors BtpA and BtpB from Brucella abortus impact NAD metabolism
Cited by: 39
Author(s): Julia María Coronas-Serna, Arthur Louche, María Rodríguez-Escudero, Morgane Roussin, Paul R. C. Imbert, Isabel Rodríguez-Escudero, Laurent Terradot, Marı́a Molina, Jean‐Pierre Gorvel, Víctor J. Cid, Suzana P. Salcedo
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-019-56135-1

Shortening injection matrix for serial crystallography
Cited by: 29
Author(s): Ki Hyun Nam
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0021507

New Structural and Functional Contexts of the Dx[DN]xDG Linear Motif: Insights into Evolution of Calcium-Binding Proteins
Cited by: 55
Author(s): Daniel J. Rigden, Duncan David Woodhead, Prudence W. H. Wong, Michael Y. Galperin
Software Mentions: 2
Published: about 15 years ago

10.1371/journal.ppat.1008794

Evolution-guided mutagenesis of the cytoplasmic incompatibility proteins: Identifying CifA’s complex functional repertoire and new essential regions in CifB
Cited by: 21
Author(s): J. Dylan Shropshire, Mahip Kalra, Seth R. Bordenstein
Software Mentions: 2
Published: almost 6 years ago

10.1074/jbc.RA118.006608

Structural basis for the specificity of renin-mediated angiotensinogen cleavage
Cited by: 19
Author(s): Yahui Yan, Aiwu Zhou, Robin W. Carrell, Randy J. Read
Software Mentions: 2
Published: over 7 years ago

10.1074/jbc.RA118.003857

The structure of the deubiquitinase USP15 reveals a misaligned catalytic triad and an open ubiquitin-binding channel
Cited by: 33
Author(s): Stephanie J. Ward, Hayley E. Gratton, Peni Indrayudha, Camille Michavila, Rishov Mukhopadhyay, Sigrun K. Maurer, Simon G. Caulton, Jonas Emsley, Ingrid Dreveny
Software Mentions: 2
Published: over 7 years ago

10.1074/jbc.RA118.006561

Molecular basis of cullin-3 (Cul3) ubiquitin ligase subversion by vaccinia virus protein A55
Cited by: 13
Author(s): Chen Gao, Mitchell A. Pallett, Tristan I. Croll, Geoffrey L. Smith, Stephen C. Graham
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.ppat.1008871

Evidence that immunization with TP0751, a bipartite Treponema pallidum lipoprotein with an intrinsically disordered region and lipocalin fold, fails to protect in the rabbit model of experimental syphilis
Cited by: 15
Author(s): Amit Luthra, Jairo M. Montezuma-Rusca, Carson J. La Vake, Morgan LeDoyt, Kristina N. Delgado, Timothy C. Davenport, Mary Fiel-Gan, Melissa J. Caimano, Justin D. Radolf, Kelly L. Hawley
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0075992

Ligand Pose and Orientational Sampling in Molecular Docking
Cited by: 123
Author(s): Ryan G. Coleman, Michael Carchia, Teague Sterling, John J. Irwin, Brian K. Shoichet
Software Mentions: 2
Published: almost 13 years ago

10.1074/jbc.RA118.002291

A low-complexity region in the YTH domain protein Mmi1 enhances RNA binding
Cited by: 11
Author(s): James A.W. Stowell, Jane L. Wagstaff, C.P. Hill, Myeong-Hee Yu, Stephen H. McLaughlin, Stefan Freund, Lori A. Passmore
Software Mentions: 2
Published: about 8 years ago

10.1074/jbc.RA118.005405

InhA, the enoyl-thioester reductase from Mycobacterium tuberculosis forms a covalent adduct during catalysis
Cited by: 15
Author(s): Bastian Vögeli, Raoul Rosenthal, Gabriele Stoffel, T. Wagner, Patrick Kiefer, Niña Socorro Cortina, Seigo Shima, Tobias J. Erb
Software Mentions: 2
Published: over 7 years ago

10.1074/jbc.M117.815316

An allosteric binding site of the α7 nicotinic acetylcholine receptor revealed in a humanized acetylcholine-binding protein
Cited by: 29
Author(s): F. Delbart, Marijke Brams, Fabian Gruss, Sam Noppen, Steve Peigneur, Sandro Boland, Patrick Chaltin, J. Brandão-Neto, Frank von Delft, Wouter G. Touw, Robbie P. Joosten, Sandra Liekens, Jan Tytgat, Chris Ulens
Software Mentions: 2
Published: over 8 years ago

10.26508/lsa.202000873

A conserved PI(4,5)P2–binding domain is critical for immune regulatory function of DOCK8
Cited by: 8
Author(s): Tetsuya Sakurai, Mutsuko Kukimoto-Niino, Kazufumi Kunimura, Nana Yamane, Daiji Sakata, Ryosuke Aihara, Tomoharu Yasuda, Shigeyuki Yokoyama, Mikako Shirouzu, Yoshihiro Fukui, Takehito Uruno
Software Mentions: 2
Published: over 5 years ago

10.1074/jbc.M117.797811

Discovery of a microbial transglutaminase enabling highly site-specific labeling of proteins
Cited by: 42
Author(s): Wojtek Steffen, Fu Chong Ko, Jigar Patel, Victor I. Lyamichev, Thomas Albert, Jörg Benz, M.G. Rudolph, Frank Bergmann, Thomas Streidl, Peter Kratzsch, Mara Boenitz-Dulat, Tobias Oelschlaegel, Michael Schraeml
Software Mentions: 2
Published: almost 9 years ago

10.1074/jbc.RA117.000119

Structural analysis of group II chitinase (ChtII) catalysis completes the puzzle of chitin hydrolysis in insects
Cited by: 45
Author(s): Wei Chen, Mingli Qu, Yong Zhou, Qing Yang
Software Mentions: 2
Published: over 8 years ago

10.1074/jbc.RA118.004227

Oxidative cyclization of N-methyl-dopa by a fungal flavoenzyme of the amine oxidase family
Cited by: 3
Author(s): Majd Lahham, Tea Pavkov‐Keller, Michael Fuchs, Johannes Niederhauser, Gabriel Chalhoub, Bastian Daniel, Wolfgang Kroutil, Karl Gruber, Peter Macheroux
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-06023-3

Search for non-lactam inhibitors of mtb β-lactamase led to its open shape in apo state: new concept for antibiotic design
Cited by: 10
Author(s): Amin Sagar, Nazia Haleem, Yaawar Mir Bashir, . Ashish
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pntd.0005374

Structure of SALO, a leishmaniasis vaccine candidate from the sand fly Lutzomyia longipalpis
Cited by: 10
Author(s): Oluwatoyin A. Asojo, Alan Kelleher, Zhuyun Liu, Jeroen Pollet, Elissa M. Hudspeth, Wanderson Rezende, Mallory Jo Groen, Christopher A. Seid, Maha Abdeladhim, Shannon E. Townsend, Waldionê de Castro, Antonio Ferreira Mendes-Sousa, Daniella Castanheira Bartholomeu, Ricardo Toshio Fujiwara, María Elena Bottazzi, Peter J. Hotez, Bin Zhan, Fabiano Oliveira, Shaden Kamhawi, Jesús G. Valenzuela
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0045379

BioFET-SIM Web Interface: Implementation and Two Applications
Cited by: 10
Author(s): Martin R. Hediger, Jan H. Jensen, Luca De Vico
Software Mentions: 2
Published: over 13 years ago

10.1007/s13238-015-0205-x

Crystal structures of Bbp from Staphylococcus aureus reveal the ligand binding mechanism with Fibrinogen α
Cited by: 16
Author(s): Xinyue Zhang, Meng Wu, Wei Zhuo, Junping Gu, Sensen Zhang, Jingpeng Ge, Maojun Yang
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pntd.0008339

Spiro-containing derivatives show antiparasitic activity against Trypanosoma brucei through inhibition of the trypanothione reductase enzyme
Cited by: 10
Author(s): Lorenzo Turcano, Theo Battista, Esther Torrente De Haro, Antonino Missineo, Cristina Alli, Giacomo Paonessa, Gianni Colotti, Steven J. Harper, Annarita Fiorillo, Andrea Ilari, Alberto Bresciani
Software Mentions: 2
Published: about 6 years ago

10.1111/mpp.13055

Three LysM effectors of <i>Zymoseptoria tritici</i> collectively disarm chitin‐triggered plant immunity
Cited by: 24
Author(s): Hui Tian, Craig Mackenzie, Luis Rodríguez‐Moreno, Grardy C. M. van den Berg, Hongxin Chen, J. J. Rudd, J.R. Mesters, Bart P.H.J. Thomma
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-00147-2

PRL3 phosphatase active site is required for binding the putative magnesium transporter CNNM3
Cited by: 41
Author(s): Huizhi Zhang, Guennadi Kozlov, Xinlu Li, Howie Wu, Irina Gulerez, Kalle Gehring
Software Mentions: 2
Published: over 9 years ago

10.1074/jbc.M116.770545

A Novel Kleefstra Syndrome-associated Variant That Affects the Conserved TPLX Motif within the Ankyrin Repeat of EHMT1 Leads to Abnormal Protein Folding
Cited by: 16
Author(s): Patrick R. Blackburn, Alexander Tischer, Michael T. Zimmermann, Jennifer L. Kemppainen, Sujatha Sastry, Amy E. Knight Johnson, Margot A. Cousin, Nicole J. Boczek, Gavin R. Oliver, Vinod K. Misra, Ralitza H. Gavrilova, Gwen Lomberk, Matthew Auton, Raúl Urrutia, Eric W. Klee
Software Mentions: 2
Published: over 9 years ago

10.1186/s12934-020-01500-3

Improved production of germacrene A, a direct precursor of ß-elemene, in engineered Saccharomyces cerevisiae by expressing a cyanobacterial germacrene A synthase
Cited by: 18
Author(s): Weixin Zhang, Junqi Guo, Zheng Wang, Yanwei Li, Xiangfeng Meng, Yu Shen, Weifeng Liu
Software Mentions: 2
Published: over 5 years ago

10.3390/v11020108

Whole Genome Sequencing of A(H3N2) Influenza Viruses Reveals Variants Associated with Severity during the 2016–2017 Season
Cited by: 31
Author(s): Bruno Simon, Maxime Pichon, Martine Valette, Gwendolyne Burfin, Mathilde Richard, Bruno Lina, Laurence Josset
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pntd.0009004

A novel circulating tamiami mammarenavirus shows potential for zoonotic spillover
Cited by: 4
Author(s): Héctor Moreno, Alberto Rastrojo, Rhys Pryce, Chiara Fedeli, Gert Zimmer, Thomas A. Bowden, Gisa Gerold, Stefan Kunz
Software Mentions: 2
Published: over 5 years ago

10.3390/md17080479

Characterization of an Alkaline GH49 Dextranase from Marine Bacterium Arthrobacter oxydans KQ11 and Its Application in the Preparation of Isomalto-Oligosaccharide
Cited by: 14
Author(s): Hongfei Liu, Wei Ren, Mingsheng Ly, Haifeng Li, Shujun Wang
Software Mentions: 2
Published: almost 7 years ago

10.1002/prot.25223

The evolution of function within the Nudix homology clan
Cited by: 49
Author(s): John R. Srouji, Anting Xu, Annsea Park, Jack F. Kirsch, Steven E. Brenner
Software Mentions: 2
Published: over 9 years ago

10.1074/jbc.M116.752782

The Salmonella Effector SpvD Is a Cysteine Hydrolase with a Serovar-specific Polymorphism Influencing Catalytic Activity, Suppression of Immune Responses, and Bacterial Virulence
Cited by: 31
Author(s): Grzegorz Grabe, Yue Zhang, Michael Przydacz, Nathalie Rolhion, Yi Yang, Jonathan N. Pruneda, David Komander, David W. Holden, S. Hare
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pgen.1000352

Residues Clustered in the Light-Sensing Knot of Phytochrome B are Necessary for Conformer-Specific Binding to Signaling Partner PIF3
Cited by: 56
Author(s): Elise A. Kikis, Yoshitomo Oka, Matthew E. Hudson, Akira Nagatani, Peter H. Quail
Software Mentions: 2
Published: over 17 years ago

10.1093/protein/gzx044

Novel CH1:CL interfaces that enhance correct light chain pairing in heterodimeric bispecific antibodies
Cited by: 26
Author(s): Maximilian Bönisch, Carolin Sellmann, Daniel Maresch, Claudia Halbig, Stefan Becker, Lars Toleikis, Björn Hock, Florian Rüker
Software Mentions: 2
Published: almost 9 years ago

10.1007/s13238-017-0405-7

The binding of a monoclonal antibody to the apical region of SCARB2 blocks EV71 infection
Cited by: 17
Author(s): Xuyuan Zhang, Yang Pan, Nan Wang, Jialong Zhang, Jingyun Li, Hao Guo, Xiangyun Yin, Zihe Rao, Xiangxi Wang, Liguo Zhang
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0011092

Modelling the Response of FOXO Transcription Factors to Multiple Post-Translational Modifications Made by Ageing-Related Signalling Pathways
Cited by: 35
Author(s): Graham R. Smith, Daryl P. Shanley
Software Mentions: 2
Published: about 16 years ago

10.1371/journal.pone.0245822

Sequence and structure comparison of ATP synthase F0 subunits 6 and 8 in notothenioid fish
Cited by: 3
Author(s): Gunjan Katyal, Brad Ebanks, Magnus Lucassen, Chiara Papetti, Lisa Chakrabarti
Software Mentions: 2
Published: almost 5 years ago

10.1074/jbc.M116.763243

Autophosphorylation-based Calcium (Ca2+) Sensitivity Priming and Ca2+/Calmodulin Inhibition of Arabidopsis thaliana Ca2+-dependent Protein Kinase 28 (CPK28)
Cited by: 44
Author(s): Kyle W. Bender, R. Kevin Blackburn, Jacqueline Monaghan, Paul Derbyshire, Frank L.H. Menke, Cyril Zipfel, Michael B. Goshe, Raymond E. Zielinski, Steven C. Huber
Software Mentions: 2
Published: over 9 years ago

10.1074/jbc.M115.672790

Agonistic Human Antibodies Binding to Lecithin-Cholesterol Acyltransferase Modulate High Density Lipoprotein Metabolism
Cited by: 29
Author(s): Ruwanthi N. Gunawardane, Preston Fordstrom, Derek E. Piper, Stephanie Masterman, Sophia Siu, Dongming Liu, M Ichael S. Brown, Mei Lü, Jie Tang, Richard Zhang, Janet Cheng, Andrew J. Gates, David Meininger, Janice Chan, Tim Carlson, Nigel Walker, Margrit Schwarz, John Delaney, Mingyue Zhou
Software Mentions: 2
Published: over 10 years ago

10.1074/jbc.M115.685065

Structural and Functional Studies of a Newly Grouped Haloquadratum walsbyi Bacteriorhodopsin Reveal the Acid-resistant Light-driven Proton Pumping Activity
Cited by: 13
Author(s): Min‐Feng Hsu, Hsu Yuan Fu, Chun-Jie Cai, Hsiu-Pin Yi, Chii‐Shen Yang, Andrew H.-J. Wang
Software Mentions: 2
Published: over 10 years ago

10.1074/jbc.M117.775031

Structure of human promyeloperoxidase (proMPO) and the role of the propeptide in processing and maturation
Cited by: 37
Author(s): Irina Grishkovskaya, Martina Paumann-Page, Rupert Tscheließnig, Johanna Stampler, Stefan Hofbauer, Monika Soudi, Benjamin Sevcnikar, Chris Oostenbrink, Paul G. Furtmüller, Kristina Djinović-Carugo, William M. Nauseef, Christian Obinger
Software Mentions: 2
Published: about 9 years ago

10.1074/jbc.M115.682203

Structure of a CGI-58 Motif Provides the Molecular Basis of Lipid Droplet Anchoring
Cited by: 41
Author(s): Andras Boeszoermenyi, Harald M. Nagy, Haribabu Arthanari, Christoph Pillip, Hanna Lindermuth, Rafael E. Luna, Gerhard Wagner, Rudolf Zechner, Klaus Zangger, Monika Oberer
Software Mentions: 2
Published: almost 11 years ago

10.1074/jbc.M115.659136

Structural and Functional Analysis of BipA, a Regulator of Virulence in Enteropathogenic Escherichia coli
Cited by: 31
Author(s): H. Fan, Joseph Hahm, Stephen Diggs, J. Jefferson P. Perry, Gregor Blaha
Software Mentions: 2
Published: almost 11 years ago

10.1074/jbc.M115.669895

Structural Basis for Antigen Recognition by Transglutaminase 2-specific Autoantibodies in Celiac Disease
Cited by: 27
Author(s): Xi Chen, Kathrin Hnida, Melissa A. Graewert, Jan Terje Andersen, Rasmus Iversen, Anne Tuukkanen, Dmitri I. Svergun, Ludvig M. Sollid
Software Mentions: 2
Published: almost 11 years ago

10.1074/jbc.M114.630681

Analysis of Human Dopamine D3 Receptor Quaternary Structure
Cited by: 23
Author(s): Sara Marsango, Gianluigi Caltabiano, Chantévy Pou, María José Varela Liste, Graeme Milligan
Software Mentions: 2
Published: about 11 years ago

10.1074/jbc.M114.611780

Trimeric Structure of (+)-Pinoresinol-forming Dirigent Protein at 1.95 Å Resolution with Three Isolated Active Sites
Cited by: 53
Author(s): Kye‐Won Kim, Clyde A. Smith, Michael D. Daily, John Cort, Laurence B. Davin, Norman G. Lewis
Software Mentions: 2
Published: over 11 years ago

10.1074/jbc.M115.645283

Organization of Subunits in the Membrane Domain of the Bovine F-ATPase Revealed by Covalent Cross-linking
Cited by: 38
Author(s): Jennifer Lee, Shuzhe Ding, Thomas B Walpole, Andrew N Holding, M.G. Montgomery, Ian M. Fearnley, John E. Walker
Software Mentions: 2
Published: about 11 years ago

10.1074/jbc.M115.659912

Uncovering the Mechanism of Aggregation of Human Transthyretin
Cited by: 112
Author(s): Lorena Saelices, Lisa M. Johnson, Wilson Y. Liang, M.R. Sawaya, Duilio Cascio, Piotr Ruchala, Julian P. Whitelegge, Lin Jiang, Roland Riek, David Eisenberg
Software Mentions: 2
Published: over 10 years ago

10.1074/jbc.M117.781948

Structure of the WipA protein reveals a novel tyrosine protein phosphatase effector from Legionella pneumophila
Cited by: 10
Author(s): Nikos Pinotsis, Gabriel Waksman
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0139137

Engineering Streptavidin and a Streptavidin-Binding Peptide with Infinite Binding Affinity and Reversible Binding Capability: Purification of a Tagged Recombinant Protein to High Purity via Affinity-Driven Thiol Coupling
Cited by: 10
Author(s): Dawson Fogen, Sau‐Ching Wu, Kenneth Ng, Sui‐Lam Wong
Software Mentions: 2
Published: almost 11 years ago

10.1074/jbc.M113.523019

Affinity Map of Bromodomain Protein 4 (BRD4) Interactions with the Histone H4 Tail and the Small Molecule Inhibitor JQ1
Cited by: 118
Author(s): Marie Jung, Martin Philpott, Susanne Müller, Jessica Schulze, Volker Badock, Uwe Eberspächer, Dieter Moosmayer, Benjamin Bader, Norbert Schmees, Amaury E. Fernández-Montalván, Bernard Haendler
Software Mentions: 2
Published: over 12 years ago

10.1074/jbc.M113.543546

Evidence for Steric Regulation of Fibrinogen Binding to Staphylococcus aureus Fibronectin-binding Protein A (FnBPA)
Cited by: 29
Author(s): Vaclav Stemberk, Richard Jones, Olga V. Moroz, Kate E. Atkin, Andrew M. Edwards, J.P. Turkenburg, Andrew Leech, Ruth C. Massey, Jennifer R. Potts
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0076803

Elucidation of Substrate Specificity in Aspergillus nidulans UDP-Galactose-4-Epimerase
Cited by: 7
Author(s): Sean A. Dalrymple, Jennifer S. Ko, I. S. Sheoran, Susan G. W. Kaminskyj, D.A.R. Sanders
Software Mentions: 2
Published: almost 13 years ago

10.3389/fphar.2018.00834

QM/MM Description of Newly Selected Catalytic Bioscavengers Against Organophosphorus Compounds Revealed Reactivation Stimulus Mediated by Histidine Residue in the Acyl-Binding Loop
Cited by: 9
Author(s): Alexander Zlobin, Yuliana A. Mokrushina, Stanislav S. Terekhov, Arthur O. Zalevsky, Т. В. Бобик, A. V. Stepanova, Maria Aliseychik, Olga V. Kartseva, С. В. Пантелеев, Andrey V. Golovin, Alexey A. Belogurov, Alexander G. Gabibov, Иван Смирнов
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0255736

Network pharmacology and molecular docking reveal the effective substances and active mechanisms of Dalbergia Odoriferain protecting against ischemic stroke
Cited by: 3
Author(s): Kedi Liu, Xingru Tao, Jing Su, Fĕi Li, Fei Mu, S. J. Zhao, Xinming Lu, Jing Li, Sha Chen, Taiwei Dong, Jialin Duan, Peifeng Wei, Miaomiao Xi
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0210842

Potent, multi-target serine protease inhibition achieved by a simplified β-sheet motif
Cited by: 7
Author(s): Xingchen Chen, Blake T. Riley, Simon J. de Veer, David E. Hoke, Jessica Van Haeften, Darren Leahy, Joakim E. Swedberg, Maria Brattsand, Perry J. Hartfield, Ashley M. Buckle, Jonathan M. Harris
Software Mentions: 2
Published: over 7 years ago

10.1074/jbc.M114.624650

Vaccinia Virus Protein A49 Is an Unexpected Member of the B-cell Lymphoma (Bcl)-2 Protein Family
Cited by: 51
Author(s): Sarah Neidel, Carlos Maluquer de Motes, Daniel Santos Mansur, Pavla Strnadova, Geoffrey L. Smith, Stephen C. Graham
Software Mentions: 2
Published: over 11 years ago

10.1074/jbc.M114.557900

Engagement of Nucleotide-binding Oligomerization Domain-containing Protein 1 (NOD1) by Receptor-interacting Protein 2 (RIP2) Is Insufficient for Signal Transduction
Cited by: 24
Author(s): Sophie Mayle, Joseph P. Boyle, Eiki Sekine, Birte Zurek, Thomas A. Kufer, Tom P. Monie
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0097519

Differential Effects of CSF-1R D802V and KIT D816V Homologous Mutations on Receptor Tertiary Structure and Allosteric Communication
Cited by: 11
Author(s): Priscila da Silva Figueiredo Celestino Gomes, Nicolas Panel, Élodie Laine, Pedro Geraldo Pascutti, Éric Solary, Luba Tchertanov
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0225244

Establishment of the experimental procedure for prediction of conjugation capacity in mutant UGT1A1
Cited by: 5
Author(s): Yutaka Takaoka, Atsuko Takeuchi, Aki Sugano, Kenji Miura, Mika Ohta, Takashi Suzuki, Daisuke Kobayashi, Takuji Kimura, Juichi Sato, Nobutaro Ban, Hisahide Nishio, Toshiyuki Sakaeda
Software Mentions: 2
Published: over 6 years ago

10.1074/jbc.M115.673632

Streptococcus pneumoniae NanC
Cited by: 36
Author(s): C.D. Owen, P. Lukacik, Jonathan Potter, O.K. Sleator, G.L. Taylor, M.A. Walsh
Software Mentions: 2
Published: over 10 years ago