Projects: pypi: PyFBA
https://packages.ecosyste.ms/registries/pypi.org/packages/PyFBA
A Python implementation of flux balance analysis
20 versions
Latest release: almost 4 years ago
27 downloads last month
Enhanced Analysis
Repository Activity:
Repository Owner:
Rob Edwards (user)
Professor of CS and Biology Writing bioinformatics code to study viruses, phages, and metagenomes.
Professor of CS and Biology Writing bioinformatics code to study viruses, phages, and metagenomes.
README Analysis:
CITATION.cff
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+10
Educational website
Repository owner has educational domain website -
+6
Science terms in README
3 scientific terms found in README -
+15
CITATION.cff file
Contains citation file for academic attribution
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem
Very Likely Science (100)
Papers Mentioning PyFBA 4
10.1186/s12859-018-2472-z
Automated generation of genome-scale metabolic draft reconstructions based on KEGGCited by: 55
Author(s): Emil Karlsen, Christian Schulz, Eivind Almaas
Software Mentions: 4
Published: over 6 years ago
10.1371/journal.pcbi.1008208
MASSpy: Building, simulating, and visualizing dynamic biological models in Python using mass action kineticsCited by: 14
Author(s): Zachary B. Haiman, Daniel C. Zielinski, Yuko Koike, James T. Yurkovich, Jaehyung Kim
Software Mentions: 4
Published: over 4 years ago
10.3389/fmicb.2016.00907
From DNA to FBA: How to Build Your Own Genome-Scale Metabolic ModelCited by: 39
Author(s): Daniel A. Cuevas, Janaka N. Edirisinghe, Chris Henry, Ross Overbeek, Taylor O’Connell, Robert A. Edwards
Software Mentions: 2
Published: about 9 years ago
10.3390/metabo10040156
Towards Predicting Gut Microbial Metabolism: Integration of Flux Balance Analysis and Untargeted MetabolomicsCited by: 8
Author(s): Ellen Kuang, Matthew W. Marney, Daniel A. Cuevas, Robert A. Edwards, Erica M. Forsberg
Software Mentions: 1
Published: over 5 years ago