Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: PyFBA

https://packages.ecosyste.ms/registries/pypi.org/packages/PyFBA

A Python implementation of flux balance analysis
20 versions
Latest release: about 3 years ago
27 downloads last month

Papers Mentioning PyFBA 4

Automated generation of genome-scale metabolic draft reconstructions based on KEGG
Cited by: 55
Author(s): Emil Karlsen, Christian Schulz, Eivind Almaas
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pcbi.1008208

MASSpy: Building, simulating, and visualizing dynamic biological models in Python using mass action kinetics
Cited by: 14
Author(s): Zachary B. Haiman, Daniel C. Zielinski, Yuko Koike, James T. Yurkovich, Jaehyung Kim
Software Mentions: 4
Published: almost 4 years ago

10.3389/fmicb.2016.00907

From DNA to FBA: How to Build Your Own Genome-Scale Metabolic Model
Cited by: 39
Author(s): Daniel A. Cuevas, Janaka N. Edirisinghe, Chris Henry, Ross Overbeek, Taylor O’Connell, Robert A. Edwards
Software Mentions: 2
Published: over 8 years ago

10.3390/metabo10040156

Towards Predicting Gut Microbial Metabolism: Integration of Flux Balance Analysis and Untargeted Metabolomics
Cited by: 8
Author(s): Ellen Kuang, Matthew W. Marney, Daniel A. Cuevas, Robert A. Edwards, Erica M. Forsberg
Software Mentions: 1
Published: over 4 years ago