Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: PyClone

https://packages.ecosyste.ms/registries/pypi.org/packages/PyClone

Wraps rclone and provides an interface for an installation at the host or container level.
3 versions
Latest release: about 4 years ago
55 downloads last month

Papers Mentioning PyClone 119

The Promise of Patient-Derived Preclinical Models to Accelerate the Implementation of Personalised Medicine for Children with Neuroblastoma
Cited by: 11
Author(s): Elizabeth R. Tucker, Sally L. George, Paola Angelini, Alejandra Bruna, Louis Chesler
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-019-41098-0

Intratumor heterogeneity inferred from targeted deep sequencing as a prognostic indicator
Cited by: 37
Author(s): Bo Young Oh, Hyun-Tae Shin, Jae Won Yun, Kyu‐Tae Kim, Jin-Ho Kim, Joon Seol Bae, Yong Beom Cho, Woo Yong Lee, Seong Hyeon Yun, Yoon Ah Park, Yeon Hee Park, Young‐Hyuck Im, Jeeyun Lee, Je‐Gun Joung, Hee Cheol Kim, Woong-Yang Park
Software Mentions: 1
Published: over 5 years ago

10.1038/bcj.2015.14

Genetic and epigenetic profiling of CLL disease progression reveals limited somatic evolution and suggests a relationship to memory-cell development
Cited by: 28
Author(s): Erin N. Smith, Emanuela M. Ghia, Christopher DeBoever, Laura Z. Rassenti, Kristen Jepsen, K-A. Yoon, Hiroko Matsui, Sophie Rozenzhak, Hakan Alakus, Peter J. Shepard, Yang Dai, Mahdieh Khosroheidari, Minou Bina, Kevin L. Gunderson, Karen Messer, Lakshmi Muthuswamy, Thomas J. Hudson, Olivier Harismendy, Christian Barrett, Catriona Jamieson, Dennis A. Carson, Thomas J. Kipps, Kelly A. Frazer
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-020-74882-4

Pharmacologic profiling of patient-derived xenograft models of primary treatment-naïve triple-negative breast cancer
Cited by: 8
Author(s): Reid T. Powell, Abena B. Redwood, Xuan Liu, Lei Guo, Shirong Cai, Xinhui Zhou, Yizheng Tu, Xiaomei Zhang, Yuan Qi, Yan Jiang, Gloria V. Echeverria, Ningping Feng, Xiao Yan, Virginia Giuliani, Joseph R. Marszalek, Timothy P. Heffernan, Christopher P. Vellano, Jason B. White, Clifford Stephan, Peter J. Davies, Stacy L. Moulder, W. Fraser Symmans, Jeffrey T. Chang, Helen Piwnica‐Worms
Software Mentions: 1
Published: about 4 years ago

10.1186/s12920-019-0626-0

Parameter, noise, and tree topology effects in tumor phylogeny inference
Cited by: 2
Author(s): Kiran Tomlinson, Layla Oesper
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2164-16-S2-S1

MixClone: a mixture model for inferring tumor subclonal populations
Cited by: 10
Author(s): Yang Li, Xiaohui Xie
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12885-019-5392-z

Quantification of intrinsic subtype ambiguity in Luminal A breast cancer and its relationship to clinical outcomes
Cited by: 9
Author(s): Neeraj Kumar, Dan Zhao, Dulal K. Bhaumik, Amit Sethi, Peter H. Gann
Software Mentions: 1
Published: over 5 years ago

10.7150/thno.37794

Genome landscapes of rectal cancer before and after preoperative chemoradiotherapy
Cited by: 26
Author(s): Jie Yang, Yuan Lin, Ying Huang, Jing Jin, Shuangmei Zou, Xiaolong Zhang, Hongmin Li, Ting Feng, Jinna Chen, Zhixiang Zuo, Jian Zheng, Yexiong Li, Ge Gao, Chen Wu, Wen Tan, Dong Lin
Software Mentions: 1
Published: almost 6 years ago

10.7150/thno.42814

Molecular characteristics of synchronous multiple gastric cancer
Cited by: 10
Author(s): Anqiang Wang, Zhongwu Li, Meng Wang, Shuqin Jia, Jiahu Chen, Ke Ji, Xin Ji, Xiang-Long Zong, Xiaojiang Wu, Ji Zhang, Ziyu Li, Lianhai Zhang, Ying Hu, Zhaode Bu, Qi Zheng, Jiafu Ji
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12885-021-08309-2

Association of emergence of new mutations in circulating tumuor DNA during chemotherapy with clinical outcome in metastatic colorectal cancer
Cited by: 0
Author(s): Ning Jia, Lianpeng Chang, Xīn Gào, Xiaohua Shi, Xuelin Dou, Mei Guan, Yingmei Shao, Ningning Li, Yuejuan Cheng, Hongyan Ying, Zhao Sun, Yanping Zhou, Lin Zhao, Jianfeng Zhou, Chunmei Bai
Software Mentions: 1
Published: over 3 years ago

10.1002/ccr3.3257

Phenotypic drift in metastatic progression of breast cancer: A case report with histologically heterogeneous lesions that are clonally related
Cited by: 1
Author(s): Jamie R. Kutasovic, Amy E. McCart Reed, Anna Sokolova, Janani Jayanthan, Leonard Da Silva, Peter T. Simpson, Sunil R. Lakhani
Software Mentions: 1
Published: about 4 years ago

10.3390/cancers11030391

A Systematic Pan-Cancer Analysis of Genetic Heterogeneity Reveals Associations with Epigenetic Modifiers
Cited by: 13
Author(s): Maria Margarida Nunes Gaspar de Matos, Ioana Posa, Filipa S. Carvalho, Vanessa A. Morais, Ana Rita Grosso, Sérgio Fernandes de Almeida
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers12082032

Primary Driver Mutations in GTF2I Specific to the Development of Thymomas
Cited by: 15
Author(s): Rumi Higuchi, Taichiro Goto, Yosuke Hirotsu, Yujiro Yokoyama, Takahiro Nakagomi, Sotaro Otake, Kenji Amemiya, Toshio Oyama, Hitoshi Mochizuki, Masao Omata
Software Mentions: 1
Published: over 4 years ago

10.3390/cancers12020325

Mutation Analysis of Colorectal and Gastric Carcinomas Originating from Adenomas: Insights into Genomic Evolution Associated with Malignant Progression
Cited by: 5
Author(s): Sung Hak Lee, Jinseon Yoo, Young Soo Song, Chul-Hyun Lim, Tae Min Kim
Software Mentions: 1
Published: almost 5 years ago

10.1038/s42003-019-0291-z

Somatic mutation detection and classification through probabilistic integration of clonal population information
Cited by: 7
Author(s): Fatemeh Dorri, Sean Jewell, Alexandre Bouchard‐Côté, Sohrab P. Shah
Software Mentions: 1
Published: almost 6 years ago