Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: PhenotypeSeeker

https://packages.ecosyste.ms/registries/pypi.org/packages/PhenotypeSeeker

Identifies phenotype-specific k-mers, creates phenotype prediction models and using this model predicts phenotype from sequenced bacterial strains
2 versions
Latest release: almost 7 years ago
5 downloads last month

Papers Mentioning PhenotypeSeeker 4

10.1128/mSystems.00550-21

Competitiveness for Nodule Colonization in Sinorhizobium meliloti: Combined <i>In Vitro</i> -Tagged Strain Competition and Genome-Wide Association Analysis
Cited by: 5
Author(s): Agnese Bellabarba, Giovanni Bacci, Francesca Decorosi, Erki Aun, Elisa Azzarello, Maido Remm, Luciana Giovannetti, Carlo Viti, Alessio Mengoni, Francesco Pini
Software Mentions: 6
Published: about 3 years ago

10.1371/journal.pcbi.1009345

Learning, visualizing and exploring 16S rRNA structure using an attention-based deep neural network
Cited by: 11
Author(s): Zhengqiao Zhao, Stephen Woloszynek, Felix Agbavor, Joshua Chang Mell, Bahrad A. Sokhansanj, Gail Rosen
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pcbi.1006434

A k-mer-based method for the identification of phenotype-associated genomic biomarkers and predicting phenotypes of sequenced bacteria
Cited by: 33
Author(s): Erki Aun, Age Brauer, Veljo Kisand, Tanel Tenson, Maido Remm
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2019.03119

Current Affairs of Microbial Genome-Wide Association Studies: Approaches, Bottlenecks and Analytical Pitfalls
Cited by: 47
Author(s): James Emmanuel San, Shakuntala Baichoo, Aquillah M. Kanzi, Yumna Moosa, Richard Lessells, Vagner Fonseca, John J O Mogaka, Robert A. Power, Túlio de Oliveira
Software Mentions: 3
Published: almost 5 years ago