Projects: pypi: PhenotypeSeeker
https://packages.ecosyste.ms/registries/pypi.org/packages/PhenotypeSeeker
Identifies phenotype-specific k-mers, creates phenotype prediction models and using this model predicts phenotype from sequenced bacterial strains
2 versions
Latest release: over 7 years ago
5 downloads last month
Science Score: 65/100
Starting Score: 100 points
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem -
-15
No science keywords
No scientific terms found in keywords/classifiers -
-10
No science terms in description
No scientific terms found in description
Very Likely Science (65)
Papers Mentioning PhenotypeSeeker 4
10.1128/mSystems.00550-21
Competitiveness for Nodule Colonization in Sinorhizobium meliloti: Combined <i>In Vitro</i> -Tagged Strain Competition and Genome-Wide Association AnalysisCited by: 5
Author(s): Agnese Bellabarba, Giovanni Bacci, Francesca Decorosi, Erki Aun, Elisa Azzarello, Maido Remm, Luciana Giovannetti, Carlo Viti, Alessio Mengoni, Francesco Pini
Software Mentions: 6
Published: almost 4 years ago
10.1371/journal.pcbi.1009345
Learning, visualizing and exploring 16S rRNA structure using an attention-based deep neural networkCited by: 11
Author(s): Zhengqiao Zhao, Stephen Woloszynek, Felix Agbavor, Joshua Chang Mell, Bahrad A. Sokhansanj, Gail Rosen
Software Mentions: 5
Published: almost 4 years ago
10.1371/journal.pcbi.1006434
A k-mer-based method for the identification of phenotype-associated genomic biomarkers and predicting phenotypes of sequenced bacteriaCited by: 33
Author(s): Erki Aun, Age Brauer, Veljo Kisand, Tanel Tenson, Maido Remm
Software Mentions: 3
Published: almost 7 years ago
10.3389/fmicb.2019.03119
Current Affairs of Microbial Genome-Wide Association Studies: Approaches, Bottlenecks and Analytical PitfallsCited by: 47
Author(s): James Emmanuel San, Shakuntala Baichoo, Aquillah M. Kanzi, Yumna Moosa, Richard Lessells, Vagner Fonseca, John J O Mogaka, Robert A. Power, Túlio de Oliveira
Software Mentions: 3
Published: over 5 years ago