Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: Pathway
https://packages.ecosyste.ms/registries/pypi.org/packages/Pathway
Pathway is a data processing framework which takes care of streaming data updates for you.
21 versions
Latest release: about 1 year ago
1 dependent package
1,787 downloads last month
Papers Mentioning Pathway 827
10.1371/journal.ppat.1004351
The Cofilin Phosphatase Slingshot Homolog 1 (SSH1) Links NOD1 Signaling to Actin RemodelingCited by: 44
Author(s): Harald Bielig, Katja Lautz, Peter Braun, Maureen Menning, Nikolaus Machuy, Christine Brügmann, Sandra Barišić, Stephan A. Eisler, Maria Andree, Birte Zurek, Hamid Kashkar, Philippe J. Sansonetti, Angelika Haußer, Thomas F. Meyer, Thomas A. Kufer
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.ppat.1007988
Ring finger protein 121 is a potent regulator of adeno-associated viral genome transcriptionCited by: 18
Author(s): Victoria J. Madigan, Julianne A. Yuziuk, Anna M. Chiarella, Tyne O. Tyson, Rita M. Meganck, Zachary C. Elmore, Longping V. Tse, Nathaniel A. Hathaway, Aravind Asokan
Software Mentions: 1
Published: over 5 years ago
10.1155/2020/6452182
<i>Pparg</i> may Promote Chemosensitivity of Hypopharyngeal Squamous Cell CarcinomaCited by: 9
Author(s): Meng Lian, Jiaming Chen, Xuzhuang Shen, Lingling Hou, Jugao Fang
Software Mentions: 1
Published: over 4 years ago
10.1155/2020/6287468
PPARG Drives Molecular Networks as an Inhibitor for the Pathologic Development and Progression of Lung AdenocarcinomaCited by: 6
Author(s): Min Zhao, Xiaoyang Li, Yunxiang Zhang, Hongming Zhu, Zhaoqing Han, Yan Kang
Software Mentions: 1
Published: over 4 years ago
10.1186/1477-5956-9-60
Ligand-dependent differences in estrogen receptor beta-interacting proteins identified in lung adenocarcinoma cells corresponds to estrogenic responsesCited by: 10
Author(s): Margarita Ivanova, SM Abner, W. M. Pierce, Carolyn M. Klinge
Software Mentions: 1
Published: about 13 years ago
10.3390/proteomes1030219
Bioinformatic Analysis of Differential Protein Expression in Calu-3 Cells Exposed to Carbon NanotubesCited by: 7
Author(s): Pin Li, Xianyin Lai, Frank A. Witzmann, Bonnie L. Blazer‐Yost
Software Mentions: 1
Published: about 11 years ago
10.3390/proteomes3030132
Proteomic Profiling of Hematopoietic Stem/Progenitor Cells after a Whole Body Exposure of CBA/CaJ Mice to Titanium (48Ti) IonsCited by: 6
Author(s): Kanokporn Noy Rithidech, Montree Tungjai, Witawat Jangiam, Louise Honikel, Chris Gordon, Xianyin Lai, Frank A. Witzmann
Software Mentions: 1
Published: over 9 years ago
10.1186/1477-7827-3-1
Cited by: 67Author(s): Ujjwal K. Rout, Ghassan M. Saed, Michael P. Diamond
Software Mentions: 1
Published: almost 20 years ago
10.1186/s12958-017-0301-2
Identification of differential genomic DNA Methylation in the hypothalamus of pubertal rat using reduced representation Bisulfite sequencingCited by: 14
Author(s): Lei Luo, Zhiqiu Yao, Jing Ye, Yuan Tian, Chen Yang, Xiaoxiao Gao, Min Song, Ya Liu, Yunhai Zhang, Yunsheng Li, Xiaorong Zhang, Fugui Fang
Software Mentions: 1
Published: about 7 years ago
10.1186/s12958-020-00661-5
HLA-A and HLA-DRB1 may play a unique role in ovarian teratoma-associated anti-N-methyl-D-aspartate receptor encephalitisCited by: 3
Author(s): Xiujuan Zhao, Juan Li, Qian Zhu, Liang Guo, Wei Xia, Xiaoqing He, Chenfeng Zhu, Hang Qi, Bo Deng, Xiangjun Chen, Jian Zhang
Software Mentions: 1
Published: about 4 years ago
10.1186/1742-4690-9-13
Spt6 levels are modulated by PAAF1 and proteasome to regulate the HIV-1 LTRCited by: 15
Author(s): Michio Nakamura, Poornima Basavarajaiah, Emilie Rousset, Cyprien Beraud, Daniel Latreille, Imène-Sarah Henaoui, Irina Lassot, Bernard Mari, Rosemary Kiernan
Software Mentions: 1
Published: almost 13 years ago
10.1186/1742-4690-11-30
HIV-1 Tat second exon limits the extent of Tat-mediated modulation of interferon-stimulated genes in antigen presenting cellsCited by: 18
Author(s): Sami Kukkonen, Maria del Pilar Martinez Viedma, Nayoung Kim, Mariana Manrique, Anna Aldovini
Software Mentions: 1
Published: over 10 years ago
10.1038/sdata.2014.41
Simplified data access on human skeletal muscle transcriptome responses to differentiated exerciseCited by: 57
Author(s): Kristian Vissing, Peter Schjerling
Software Mentions: 1
Published: almost 10 years ago
10.1038/srep20455
Anatomical heterogeneity of tendon: Fascicular and interfascicular tendon compartments have distinct proteomic compositionCited by: 78
Author(s): Chavaunne T. Thorpe, Mandy J. Peffers, Deborah M. Simpson, Elizabeth Halliwell, Hazel R. C. Screen, Peter Clegg
Software Mentions: 1
Published: almost 9 years ago
10.1038/srep27785
Virus-induced gene silencing of the RPC5-like subunit of RNA polymerase III caused pleiotropic effects in Nicotiana benthamianaCited by: 5
Author(s): Lev G. Nemchinov, Alexander M. Boutanaev, Olga A. Postnikova
Software Mentions: 1
Published: over 8 years ago
10.1038/srep35462
Universal stress protein Rv2624c alters abundance of arginine and enhances intracellular survival by ATP binding in mycobacteriaCited by: 13
Author(s): Qiong Jia, Xinling Hu, Dawei Shi, Yan Zhang, Meihao Sun, Jianwei Wang, Kaixia Mi, Guofeng Zhu
Software Mentions: 1
Published: about 8 years ago
10.1038/srep39873
The metastasis suppressor RARRES3 as an endogenous inhibitor of the immunoproteasome expression in breast cancer cellsCited by: 20
Author(s): Alison Anderson, Murugan Kalimutho, Sarah K. Harten, Devathri Nanayakkara, Kum Kum Khanna, Mark A. Ragan
Software Mentions: 1
Published: almost 8 years ago
10.1038/srep40194
Nrf2 regulates gene-environment interactions in an animal model of intrauterine inflammation: Implications for preterm birth and prematurityCited by: 18
Author(s): Thomas E. Sussan, Kuladeep Sudini, C. Conover Talbot, Xiaobin Wang, Marsha Wills‐Karp, Irina Burd, Shyam Biswal
Software Mentions: 1
Published: almost 8 years ago
10.1038/srep40601
Urinary Exosomes Contain MicroRNAs Capable of Paracrine Modulation of Tubular Transporters in KidneyCited by: 57
Author(s): Tannia Gracia, Xiaonan Wang, Ya Su, Elizabeth E. Norgett, Timothy Williams, Pablo Moreno-Ger, Gos Micklem, Fiona E. Karet
Software Mentions: 1
Published: almost 8 years ago
10.1038/srep41639
Identification of miRNA, lncRNA and mRNA-associated ceRNA networks and potential biomarker for MELAS with mitochondrial DNA A3243G mutationCited by: 36
Author(s): Wei Wang, Qianqian Zhuang, Kunqian Ji, Bing Wen, Pengfei Lin, Yuying Zhao, Wei Li, Chuanzhu Yan
Software Mentions: 1
Published: almost 8 years ago
10.1038/s41598-017-01695-3
Monocytic microRNA profile associated with coronary collateral artery function in chronic total occlusion patientsCited by: 5
Author(s): Nazanin Hakimzadeh, Joëlle Elias, Gilbert Wijntjens, Ruud Theunissen, Angela van Weert, Martijn W. Smulders, Nynke van den Akker, Perry D. Moerland, Hein J. Verberne, Loes P. Hoebers, José P.S. Henriques, A.M. van der Laan, Mustafa İlhan, Mark J. Post, Sebastiaan C.A.M. Bekkers, Jan J. Piek
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-017-02159-4
Role of S-Palmitoylation by ZDHHC13 in Mitochondrial function and Metabolism in LiverCited by: 53
Author(s): Li-Fen Shen, Yi–Ju Chen, Kai-Ming Liu, Amir N. Saleem Haddad, I-Wen Song, Hsiao-Yuh Roan, Liying Chen, J. J. Yen, Yu‐Ju Chen, Jer‐Yuarn Wu, Yuan-Tsong Chen
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-017-09604-4
A miR-SNP biomarker linked to an increased lung cancer survival by miRNA-mediated down-regulation of FZD4 expression and Wnt signalingCited by: 16
Author(s): Jing Lin, Roza Zandi, Ruping Shao, Jian Gu, Yuanqin Ye, Jing Wang, Yang Zhao, Alexander Pertsemlidis, Ignacio I. Wistuba, Xifeng Wu, Jack A. Roth, Lin Ji
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-017-08741-0
Residual Risk Factors to Predict Major Adverse Cardiovascular Events in Atherosclerotic Cardiovascular Disease Patients with and without Diabetes MellitusCited by: 30
Author(s): Fang‐Ju Lin, Wei Kung Tseng, Wei Hsian Yin, Hung I. Yeh, Jaw Wen Chen, Chin-Pyng Wu
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-017-11094-3
CG200745, an HDAC inhibitor, induces anti-tumour effects in cholangiocarcinoma cell lines via miRNAs targeting the Hippo pathwayCited by: 43
Author(s): Dawoon Jung, Soo Been Park, Kahee Kim, Chanyang Kim, Si Young Song
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-017-12331-5
Infection with Burkholderia pseudomallei – immune correlates of survival in acute melioidosisCited by: 33
Author(s): Susanna Dunachie, Kemajittra Jenjaroen, Catherine J. Reynolds, Kathryn Quigley, Ruhena Sergeant, Manutsanun Sumonwiriya, Panjaporn Chaichana, Suchintana Chumseng, Pitchayanant Ariyaprasert, Patricia Lassaux, L.J. Gourlay, Charuporn Promwong, Prapit Teparrukkul, Direk Limmathurotsakul, Nicholas P. J. Day, Daniel M. Altmann, Rosemary J. Boyton
Software Mentions: 1
Published: about 7 years ago