pypi: PSI | Projects | Ecosyste.ms: Papers

10.1002/1873-3468.13634

The gelatinase biosynthesis‐activating pheromone binds and stabilises the FsrB membrane protein in Enterococcus faecalis quorum sensing
Cited by: 3
Author(s): Sean Littlewood, Helena Tattersall, Charlotte Hughes, Rohanah Hussain, Pikyee Ma, Stephen E. Harding, Jiro Nakayama, Mary K. Phillips‐Jones
Software Mentions: 1
Published: about 5 years ago

10.3389/fbioe.2014.00068

Microalgal Metabolic Network Model Refinement through High-Throughput Functional Metabolic Profiling
Cited by: 25
Author(s): Amphun Chaiboonchoe, Bushra Dohai, Hong-Hong Cai, David R. Nelson, Kenan Jijakli, Kourosh Salehi‐Ashtiani
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2021.632686

Influence of Non-canonical DNA Bases on the Genomic Diversity of Tevenvirinae
Cited by: 3
Author(s): Nikita A. Nikulin, Andrei A. Zimin
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2019.00735

Opsin 1 and Opsin 2 of the Corn Smut Fungus Ustilago maydis Are Green Light-Driven Proton Pumps
Cited by: 16
Author(s): Sabine Panzer, Annika Brych, Alfred Batschauer, Ulrich Terpitz
Software Mentions: 1
Published: over 5 years ago

10.3389/fnins.2019.00964

Brain Functional Connectivity Through Phase Coupling of Neuronal Oscillations: A Perspective From Magnetoencephalography
Cited by: 51
Author(s): Laura Marzetti, Alessio Basti, Federico Chella, Antea D’Andrea, Jaakko Syrjälä, Vittorio Pizzella
Software Mentions: 1
Published: about 5 years ago

10.3389/fphar.2021.712489

Protective Effects of Inhibition of Mitochondrial Fission on Organ Function After Sepsis
Cited by: 9
Author(s): Yu Zhu, Lei Kuang, Yuzhang Wu, Huayun Deng, Han She, Yuanqun Zhou, Jie Zhang, Liangming Liu, Tao Li
Software Mentions: 1
Published: about 3 years ago

10.3389/fpls.2018.00800

Proteomics and Phosphoproteomics of Heat Stress-Responsive Mechanisms in Spinach
Cited by: 68
Author(s): Qi Zhao, Wenxin Chen, Jiayi Bian, Hao Xie, Ying Liu, Chenxi Xu, Jun Ma, Siyi Guo, Jiaying Chen, Xiaofeng Cai, Xiaoli Wang, Quanhua Wang, Yi‐Min She, Sixue Chen, Zhiqiang Zhou, Shaojun Dai
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2015.00441

Cytological and proteomic analyses of horsetail (Equisetum arvense L.) spore germination
Cited by: 7
Author(s): Qi Zhao, Jing Gao, Jinwei Suo, Sixue Chen, Tai Wang, Shaojun Dai
Software Mentions: 1
Published: over 9 years ago

10.3389/fvets.2021.638820

Pan-Genome Analysis of Vibrio cholerae and Vibrio metschnikovii Strains Isolated From Migratory Birds at Dali Nouer Lake in Chifeng, China
Cited by: 6
Author(s): Lin Zheng, Li Zhu, Jing Jie, Jiayao Guan, Gejin Lu, Lin-Hong Xie, Xue Ji, Dong Chu, Yansong Sun, Ping Chen, Xuejun Guo
Software Mentions: 1
Published: over 3 years ago

10.1186/gb-2006-7-7-r60

Cited by: 141
Author(s): Lakshminarayan M. Iyer, A. Maxwell Burroughs, L. Aravind
Software Mentions: 1
Published: almost 19 years ago

10.1186/gb-2008-9-4-r68

Evolutionary potentials: structure specific knowledge-based potentials exploiting the evolutionary record of sequence homologs
Cited by: 8
Author(s): Alejandro Panjkovich, Francisco S. Melo, Marc A. Martí‐Renom
Software Mentions: 1
Published: almost 17 years ago

10.1186/gb-2004-6-1-r4

Cited by: 215
Author(s): Asba Tasneem, Lakshminarayan M. Iyer, Eric Jakobsson, L. Aravind
Software Mentions: 1
Published: almost 21 years ago

10.1093/gbe/evz010

Discovery and Evolution of New Domains in Yeast Heterochromatin Factor Sir4 and Its Partner Esc1
Cited by: 7
Author(s): Guilhem Faure, Kévin Jézéquel, Florian Roisné-Hamelin, Tristan Bitard‐Feildel, Alexis Lamiable, Stéphane Marcand, Isabelle Callebaut
Software Mentions: 1
Published: almost 6 years ago

10.9745/GHSP-D-15-00304

Ugandan Women’s View of the IUD: Generally Favorable but Many Have Misperceptions About Health Risks
Cited by: 14
Author(s): Rogers Twesigye, Peter Buyungo, Henry Kaula, Dennis Buwembo
Software Mentions: 1
Published: over 8 years ago

10.9745/GHSP-D-17-00295

Putting Consumers at the Center in a Context of Limited Choice and Availability of Modern Contraception in Luanda, Angola. Authors' Response to “Assessing Angola's Contraceptive Market Landscape”
Cited by: 0
Author(s): Benjamín Nieto-Andrade, Eva Fidel, Rebecca G. Simmons, Dana Sievers, А. В. Федорова, Suzanne O. Bell, Karen Weidert, Ndola Prata
Software Mentions: 1
Published: about 7 years ago

10.1016/j.heliyon.2019.e02092

Synchronous brain networks for passive auditory perception in depressive states: A pilot study
Cited by: 3
Author(s): Kunihiro Aiba, Eri Miyauchi, Masahiro Kawasaki
Software Mentions: 1
Published: over 5 years ago

10.1001/jamanetworkopen.2021.24662

Quality of Care Before and After Mergers and Acquisitions of Rural Hospitals
Cited by: 8
Author(s): Hui Jiang, Kathryn R. Fingar, Lan Liang, Rachel Mosher Henke, Teresa Gibson
Software Mentions: 1
Published: about 3 years ago

10.1128/JB.00681-17

Phyletic Distribution and Lineage-Specific Domain Architectures of Archaeal Two-Component Signal Transduction Systems
Cited by: 36
Author(s): Michael Y. Galperin, Kira S. Makarova, Yuri I. Wolf, Eugene V. Koonin
Software Mentions: 1
Published: over 6 years ago

10.1128/JB.00284-20

DrpB (YedR) Is a Nonessential Cell Division Protein in Escherichia coli
Cited by: 2
Author(s): Atsushi Yahashiri, Jill Babor, Ariel L. Anwar, Ryan P. Bezy, Evan W. Piette, S J Ryan Arends, Ute Müh, Monica R. Steffen, Jeremy M. Cline, David N. Stanek, Steven D. Lister, Shauna M. Swanson, David S. Weiss
Software Mentions: 1
Published: about 4 years ago

10.1016/j.jbc.2021.100747

Structural genomics and the Protein Data Bank
Cited by: 11
Author(s): K. Michalska, A. Joachimiak
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.ppat.0030049

M. tuberculosis Ser/Thr Protein Kinase D Phosphorylates an Anti-Anti–Sigma Factor Homolog
Cited by: 85
Author(s): Andrew E. Greenstein, Jason A. MacGurn, Christina E. Baer, Arnold M. Falick, Jeffery S. Cox, Tom Alber
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.ppat.1005868

Natural Killer Cell Evasion Is Essential for Infection by Rhesus Cytomegalovirus
Cited by: 34
Author(s): Elizabeth R. Sturgill, Daniel Malouli, Scott G. Hansen, Benjamin J. Burwitz, Seongkyung Seo, Christine L. Schneider, Jennie Womack, Marieke C. Verweij, Abigail B. Ventura, Amruta Bhusari, Krystal Jeffries, Alfred W. Legasse, Michael K. Axthelm, Amy W. Hudson, Jonah B. Sacha, Louis J. Picker, Klaus Früh
Software Mentions: 1
Published: about 8 years ago

10.1186/1477-5956-11-S1-S5

Predicting beta-turns in proteins using support vector machines with fractional polynomials
Cited by: 6
Author(s): Murtada K. Elbashir, Jianxin Wang, Fang‐Xiang Wu, Lusheng Wang
Software Mentions: 1
Published: about 11 years ago

10.1002/pmic.201400535

The mzqLibrary - An open source Java library supporting the HUPO-PSI quantitative proteomics standard
Cited by: 4
Author(s): Da Qi, Huaizhong Zhang, Jun Fan, Simon Perkins, Addolorata Pisconti, Deborah M. Simpson, Conrad Bessant, Simon J. Hubbard, Andrew R. Jones
Software Mentions: 1
Published: over 9 years ago

10.1002/pmic.201700244

OLS Client and OLS Dialog: Open Source Tools to Annotate Public Omics Datasets
Cited by: 17
Author(s): Yasset Perez‐Riverol, Tobias Ternent, Maximilian Koch, Harald Barsnes, Olga Vrousgou, Simon Jupp, Juan Antonio Vizcaíno
Software Mentions: 1
Published: about 7 years ago

10.1186/1748-717X-2-14

Range accuracy in carbon ion treatment planning based on CT-calibration with real tissue samples
Cited by: 58
Author(s): Eike Rietzel, D. Schardt, Thomas Haberer
Software Mentions: 1
Published: almost 17 years ago

10.1186/1748-717X-7-138

Monitor units are not predictive of neutron dose for high-energy IMRT
Cited by: 2
Author(s): Roger A. Hälg, Jürgen Besserer, M. Boschung, Sabine Mayer, Uwe Schneider
Software Mentions: 1
Published: over 12 years ago

10.1186/s13014-019-1231-2

4DMRI-based investigation on the interplay effect for pencil beam scanning proton therapy of pancreatic cancer patients
Cited by: 20
Author(s): Kai Dolde, Ye Zhang, Naved Chaudhri, Christian Dávid, Marc Kachelrieß, Anthony Lomax, Patrick Naumann, N. Saito, Damien Charles Weber, A. Pfaffenberger
Software Mentions: 1
Published: almost 6 years ago

10.1186/1742-4755-8-29

Brand equity and willingness to pay for condoms in zimbabwe
Cited by: 19
Author(s): W. Douglas Evans, Noah Taruberekera, Kim Longfield, Jeremy Snider
Software Mentions: 1
Published: about 13 years ago

10.1155/2014/842709

Computer-Assisted Planning and Patient-Specific Instruments for Bone Tumor Resection within the Pelvis: A Series of 11 Patients
Cited by: 97
Author(s): F. Gouin, Paul Laurent, G. Odri, Olivier Cartiaux
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep32717

Na2CO3-responsive mechanisms in halophyte Puccinellia tenuiflora roots revealed by physiological and proteomic analyses
Cited by: 54
Author(s): Qi Zhao, Jinwei Suo, Sixue Chen, Yudan Jin, Xiaolin Ma, Zepeng Yin, Yuhong Zhang, Tai Wang, Ji Luo, Wenhai Jin, Xia Zhang, Zhiqiang Zhou, Shaojun Dai
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-19455-2

Characterization of a Novel Tectivirus Phage Toil and Its Potential as an Agent for Biolipid Extraction
Cited by: 18
Author(s): Jason J. Gill, Baixin Wang, Emily Sestak, Ryland Young, Kung-Hui Chu
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-32922-0

A novel ulvan lyase family with broad-spectrum activity from the ulvan utilisation loci of Formosa agariphila KMM 3901
Cited by: 26
Author(s): Venkat Rao Konasani, Chunsheng Jin, Niclas G. Karlsson, Eva Albers
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-43129-2

In silico structural elucidation of RNA-dependent RNA polymerase towards the identification of potential Crimean-Congo Hemorrhagic Fever Virus inhibitors
Cited by: 21
Author(s): Muhammad Usman Mirza, Michiel Vanmeert, Matheus Froeyen, Amjad Ali, Shazia Rafique, Muhammad Idrees
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-45358-x

Solvent-Assisted Paper Spray Ionization Mass Spectrometry (SAPSI-MS) for the Analysis of Biomolecules and Biofluids
Cited by: 17
Author(s): Nicolò Riboni, Alessandro Quaranta, Hitesh V. Motwani, Nicklas Österlund, Astrid Gräslund, Federica Bianchi, Leopold L. Ilag
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-75002-y

Characterizing the evolution life cycle of the Sunkoshi landslide in Nepal with multi-source SAR data
Cited by: 13
Author(s): Aimin Meng, Lu Zhang, Yu Dong, Lijun Su, Xuguo Shi, Timo Balz, Mingsheng Liao
Software Mentions: 1
Published: about 4 years ago

10.3390/s16091358

Interference Confocal Microscope Integrated with Spatial Phase Shifter
Cited by: 1
Author(s): Weibo Wang, Kang Gu, Xiaoyu You, Jiubin Tan, Jian Liu
Software Mentions: 1
Published: about 8 years ago

10.3390/s18051372

Integration of 24 Feature Types to Accurately Detect and Predict Seizures Using Scalp EEG Signals
Cited by: 39
Author(s): Yinda Zhang, Yang Shen, Yang Liu, Yexian Zhang, Bingfeng Han, Fengfeng Zhou
Software Mentions: 1
Published: over 6 years ago

10.3390/s18113941

Sensors for Deformation Monitoring of Large Civil Infrastructures
Cited by: 5
Author(s): Maria Marsella, Marco Scaioni
Software Mentions: 1
Published: about 6 years ago

10.3390/s19010115

Deformation Estimation for Time Series InSAR Using Simulated Annealing Algorithm
Cited by: 5
Author(s): Wen-Shan Duan, Hong Zhang, Chao Wang
Software Mentions: 1
Published: almost 6 years ago

10.3390/s19143181

Monitoring the Land Subsidence Area in a Coastal Urban Area with InSAR and GNSS
Cited by: 50
Author(s): Bo Hu, Junyu Chen, Xingfu Zhang
Software Mentions: 1
Published: over 5 years ago

10.1186/1742-4682-11-51

Papillomavirus binding factor (PBF) is an intrinsically disordered protein with potential participation in osteosarcoma genesis, in silico evidence
Cited by: 1
Author(s): Paola Castillo, Abraham Cetina-Corona, Alfonso Méndez‐Tenorio, L. Michel Espinoza-Fonseca, Blanca Lilia Barrón
Software Mentions: 1
Published: almost 10 years ago

10.1111/tra.12432

Using <scp>HHsearch</scp> to tackle proteins of unknown function: A pilot study with <scp>PH</scp> domains
Cited by: 48
Author(s): David R. Fidler, Sarah E. Murphy, Katherine Courtis, Pantelis Antonoudiou, Rana El‐Tohamy, Jonathan Ient, Tim P. Levine
Software Mentions: 1
Published: about 8 years ago

10.3390/jof7020118

A Three-Dimensional Model of the Yeast Transmembrane Sensor Wsc1 Obtained by SMA-Based Detergent-Free Purification and Transmission Electron Microscopy
Cited by: 10
Author(s): Natalia Voskoboynikova, Mária Karľová, Rainer Kurre, Armen Y. Mulkidjanian, К. В. Шайтан, Olga Sokolova, Heinz‐Jürgen Steinhoff, Jürgen J. Heinisch
Software Mentions: 1
Published: almost 4 years ago

10.7189/jogh-04-020301

Routine monitoring systems for integrated community case management programs: Lessons from 18 countries in sub-Saharan Africa.
Cited by: 20
Author(s): Tanya Guenther, Yolanda Barberá Laínez, Nicholas P. Oliphant, Martin Dale, Serge Raharison, Laura Miller, Geoffrey Namara, Theresa Diaz
Software Mentions: 1
Published: almost 10 years ago

10.3390/ijerph111213017

Disparities in Rates of Inpatient Mortality and Adverse Events: Race/Ethnicity and Language as Independent Contributors
Cited by: 28
Author(s): Anika L Hines, Roxanne M Andrews, Ernest Moy, Marguerite L Barrett, Rosanna M. Coffey
Software Mentions: 1
Published: almost 10 years ago

10.3390/ijerph18020642

The Quality of Infectious Disease Hospital Websites in Poland in Light of the COVID-19 Pandemic
Cited by: 6
Author(s): Karol Król, Dariusz Zdonek
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijerph18179043

Interaction of Impulsivity, Attention, and Intelligence in Early Adolescents Born Preterm without Sequelae
Cited by: 0
Author(s): Rocío Galán-Megías, María Dolores Lanzarote-Fernández, Javier Casanovas-Lax, Eva María Padilla-Muñoz
Software Mentions: 1
Published: about 3 years ago

10.2196/resprot.7562

Geriatric Patient Safety Indicators Based on Linked Administrative Health Data to Assess Anticoagulant-Related Thromboembolic and Hemorrhagic Adverse Events in Older Inpatients: A Study Proposal
Cited by: 4
Author(s): Marie-Annick Le Pogam, Catherine Quantin, Oliver Reich, Philippe Tuppin, A. Fagot-Campagna, Fred Paccaud, Isabelle Peytremann‐Bridevaux, Bernard Burnand
Software Mentions: 1
Published: over 7 years ago

10.1007/s10916-016-0657-4

Privacy-Preserving Integration of Medical Data
Cited by: 25
Author(s): Atsuko Miyaji, Kazuhisa Nakasho, Shohei Nishida
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.24303

Helical jackknives control the gates of the double-pore K+ uptake system KtrAB
Cited by: 23
Author(s): Marina Diskowski, Ahmad Reza Mehdipour, Dorith Wunnicke, Deryck J. Mills, Vedrana Mikušević, Natalie Bärland, Jan Hoffmann, Nina Morgner, Heinz‐Jürgen Steinhoff, Gerhard Hummer, Janet Vonck, Inga Hänelt
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms22052647

Bioinformatic Analysis of Structure and Function of LIM Domains of Human Zyxin Family Proteins
Cited by: 11
Author(s): Mohd Quadir Siddiqui, Maulik D. Badmalia, Trushar R. Patel
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22063214

In Silico Analysis of Huntingtin Homologs in Lower Eukaryotes
Cited by: 1
Author(s): Valentina Brandi, Fabio Polticelli
Software Mentions: 1
Published: over 3 years ago

10.1186/s41687-021-00357-3

The Norwegian PROMIS-29: psychometric validation in the general population for Norway
Cited by: 8
Author(s): Andrew Garratt, Joël Coste, Alexandra Rouquette, José M Valderas
Software Mentions: 1
Published: about 3 years ago

10.1007/s00132-018-3637-1

Individualized alignment in total knee arthroplasty using image-based robotic assistance
Cited by: 27
Author(s): Tilman Calließ, Max Ettinger, Peter Savov, Roman Karkosch, Henning Windhagen
Software Mentions: 1
Published: about 6 years ago

10.1111/os.12762

Knee Prosthesis in the Computer Era
Cited by: 5
Author(s): Hasan Basri Sezer, Yoann Bohu, Alexandre Hardy, Nicolas Lefèvre
Software Mentions: 1
Published: almost 4 years ago

10.1107/S1744309110037619

Structure of a tryptophanyl-tRNA synthetase containing an iron–sulfur cluster
Cited by: 18
Author(s): Gye Won Han, Xiang‐Lei Yang, Daniel McMullan, Yeeting E. Chong, S. Sri Krishna, Christopher L. Rife, Dana Weekes, Scott M. Brittain, Polat Abdubek, Eileen Ambing, Tamara Astakhova, Herbert L. Axelrod, Dennis Carlton, J.M. Caruthers, Hsiu Ju Chiu, Thomas Clayton, Lian Duan, Julie Feuerhelm, Joanna C Grant, Slawomir K. Grzechnik, Lukasz Jaroszewski, Kevin K. Jin, Heath E. Klock, Mark W. Knuth, Abhinav Kumar, David Marciano, Mitchell D. Miller, Andrew Morse, Edward Nigoghossian, Linda Okach, Jessica Paulsen, Ron Reyes, H. van den Bedem, Aprilfawn White, Guenter Wolf, Qingping Xu, Keith O. Hodgson, John Wooley, Ashley M. Deacon, Adam Godzik, Scott A. Lesley, Marc‐André Elsliger, Paul Schimmel, Ian A. Wilson
Software Mentions: 1
Published: about 14 years ago

10.1107/S1744309110013242

New variants of known folds: do they bring new biology?
Cited by: 3
Author(s): Eugene V. Koonin
Software Mentions: 1
Published: over 14 years ago

10.3390/antibiotics8030112

Antibiofilm Activity of Three Different Irrigation Techniques: An in Vitro Study
Cited by: 15
Author(s): Caterina Eneide, Raffaella Castagnola, Cécilia Martini, Nicola M. Grande, Francesca Bugli, Romeo Patini, Massimo Cordaro, Maurizio Sanguinetti, Giovanni Olivi, Gaetano Isola, Luca Marigo
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2105-11-204

Structural fragment clustering reveals novel structural and functional motifs in α-helical transmembrane proteins
Cited by: 16
Author(s): Annalisa Marsico, Andreas Henschel, Christof Winter, Anne Tuukkanen, Boris Vassilev, Kerstin Scheubert, Michael Schroeder
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2105-8-356

Identification of homologs in insignificant blast hits by exploiting extrinsic gene properties
Cited by: 32
Author(s): Jos Boekhorst, Berend Snel
Software Mentions: 1
Published: about 17 years ago

10.1186/1471-2105-9-S12-S12

Real value prediction of protein solvent accessibility using enhanced PSSM features
Cited by: 26
Author(s): Darby Tien Hao Chang, Hsuan Yu Huang, Yu Tang Syu, Chih Peng Wu
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2105-6-185

PSI-BLAST-ISS: an intermediate sequence search tool for estimation of the position-specific alignment reliability
Cited by: 31
Author(s): Mindaugas Margelevičius, Česlovas Venclovas
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2105-7-124

Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information
Cited by: 84
Author(s): Jiangning Song, Kevin Burrage, Yawen Zheng, Thomas Huber
Software Mentions: 1
Published: over 18 years ago

10.1186/s12859-017-1686-9

Simple adjustment of the sequence weight algorithm remarkably enhances PSI-BLAST performance
Cited by: 21
Author(s): Tsuneo Oda, Kyungtaek Lim, Kentaro Tomii
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2105-7-164

Application of a sensitive collection heuristic for very large protein families: Evolutionary relationship between adipose triglyceride lipase (ATGL) and classic mammalian lipases
Cited by: 31
Author(s): Georg Schneider, Georg Neuberger, Michael Wildpaner, Sun Tian, Igor N. Berezovsky, Frank Eisenhaber
Software Mentions: 1
Published: over 18 years ago

10.1186/s12859-015-0851-2

PredRSA: a gradient boosted regression trees approach for predicting protein solvent accessibility
Cited by: 37
Author(s): Chao Fan, Diwei Liu, Rui Huang, Zhigang Chen, Lei Deng
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2105-7-53

PDB-UF: database of predicted enzymatic functions for unannotated protein structures from structural genomics
Cited by: 33
Author(s): Marcin von Grotthuss, Dariusz Plewczynski, Krzysztof Ginalski, Leszek Rychlewski, Eugene I. Shakhnovich
Software Mentions: 1
Published: almost 19 years ago

10.1186/1471-2105-10-414

Modular prediction of protein structural classes from sequences of twilight-zone identity with predicting sequences
Cited by: 86
Author(s): Marcin J. Mizianty, Lukasz Kurgan
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2105-7-68

Prediction of protein continuum secondary structure with probabilistic models based on NMR solved structures
Cited by: 21
Author(s): Mikael Bodén, Yawen Zheng, Timothy L. Bailey
Software Mentions: 1
Published: almost 19 years ago

10.1186/1471-2105-10-S15-S8

Protein subcellular localization prediction of eukaryotes using a knowledge-based approach
Cited by: 33
Author(s): Hsin-Nan Lin, Ching Tai Chen, Ting Yi Sung, Shinn-Ying Ho, Wen Lian Hsu
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2105-7-57

FastGroupII: A web-based bioinformatics platform for analyses of large 16S rDNA libraries
Cited by: 195
Author(s): Yanan Yu, Mya Breitbart, Pat McNairnie, Forest Rohwer
Software Mentions: 1
Published: almost 19 years ago

10.1186/1471-2148-4-26

Cited by: 10
Author(s): Sachiko Matsutani
Software Mentions: 1
Published: almost 21 years ago

10.1186/1471-2148-7-103

Analysis of septins across kingdoms reveals orthology and new motifs
Cited by: 245
Author(s): Fangfang Pan, Russell L. Malmberg, Michelle Momany
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2148-7-29

Control systems for membrane fusion in the ancestral eukaryote; evolution of tethering complexes and SM proteins
Cited by: 189
Author(s): Vassiliki Lila Koumandou, Joel B. Dacks, Richard M. R. Coulson, Mark C. Field
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2148-9-60

Ancient diversification of eukaryotic MCM DNA replication proteins
Cited by: 75
Author(s): Yuan Liu, Thomas A. Richards, Stephen J. Aves
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2148-11-7

Comparative genomics of proteins involved in RNA nucleocytoplasmic export
Cited by: 31
Author(s): Mariana Serpeloni, Newton Medeiros Vidal, Samuel Goldenberg, Andréa Rodrigues Ávila, Federico G. Hoffmann
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2148-9-36

Recurring cluster and operon assembly for Phenylacetate degradation genes
Cited by: 25
Author(s): Fergal J. Martin, James O. McInerney
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2164-10-S1-S1

Prediction of DNA-binding residues from protein sequence information using random forests
Cited by: 97
Author(s): Liangjiang Wang, Mary Qu Yang, Jack Yang
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12864-015-2299-1

SOHSite: incorporating evolutionary information and physicochemical properties to identify protein S-sulfenylation sites
Cited by: 39
Author(s): V. M. Bui, Shun Long Weng, Cheng Tsung Lu, Tzu Hao Chang, Julia Tzu Ya Weng, Tzong-Yi Lee
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2164-15-1159

Sequence search and analysis of gene products containing RNA recognition motifs in the human genome
Cited by: 9
Author(s): Sony Malhotra, Ramanathan Sowdhamini
Software Mentions: 1
Published: almost 10 years ago

10.1186/1471-2164-11-590

A widespread peroxiredoxin-like domain present in tumor suppression- and progression-implicated proteins
Cited by: 24
Author(s): Krzysztof Pawłowski, Anna Muszewska, Anna Lenart, Teresa Szczepińska, Adam Godzik, Marcin Grynberg
Software Mentions: 1
Published: about 14 years ago

10.1186/1471-2164-6-112

GH97 is a new family of glycoside hydrolases, which is related to the α-galactosidase superfamily
Cited by: 31
Author(s): D. G. Naumoff
Software Mentions: 1
Published: about 19 years ago

10.1186/1472-6963-8-176

Impact of date stamping on patient safety measurement in patients undergoing CABG: Experience with the AHRQ Patient Safety Indicators
Cited by: 19
Author(s): Laurent G. Glance, Yue Li, Turner M. Osler, Dana B. Mukamel, Andrew W. Dick
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2180-10-56

Frequency and diversity of small cryptic plasmids in the genus Rahnella
Cited by: 25
Author(s): Wilfried Rozhon, Elena Petutschnig, Mamoona Khan, David Summers, Brigitte Poppenberger
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2180-5-9

Cited by: 109
Author(s): Mark J. Pallen, Scott A. Beatson, Christopher M. Bailey
Software Mentions: 1
Published: almost 20 years ago

10.1186/s12891-020-03707-2

Accurate implant fit and leg alignment after cruciate-retaining patient-specific total knee arthroplasty
Cited by: 8
Author(s): Joerg Arnholdt, Yama Kamawal, Konstantin Horas, Boris Michael Holzapfel, Fabian Gilbert, Axel Ripp, Maximilian Rudert, Andre F. Steinert
Software Mentions: 1
Published: about 4 years ago

10.1186/1471-2474-15-299

Prediction of poor outcomes six months following total knee arthroplasty in patients awaiting surgery
Cited by: 43
Author(s): Eugen Lungu, François Desmeules, Clermont E. Dionne, Étienne L. Belzile, Pascal‐André Vendittoli
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2458-13-S2-S4

Applying the disability-adjusted life year to track health impact of social franchise programs in low- and middle-income countries
Cited by: 3
Author(s): Dominic Montagu, Lek Ngamkitpaiboon, Susan Duvall, Amy Ratcliffe
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2458-13-S2-S2

Putting health metrics into practice: using the disability-adjusted life year for strategic decision making
Cited by: 9
Author(s): Kim Longfield, Brian K. Smith, Rob Gray, Lek Ngamkitpaiboon, Nadja A. Vielot
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2458-13-S2-S3

Modeling health impact of global health programs implemented by Population Services International
Cited by: 5
Author(s): Hongmei Yang, Susan Duvall, Amy Ratcliffe, David Jeffries, Warren Stevens
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2458-13-S2-S6

Equity monitoring for social marketing: use of wealth quintiles and the concentration index for decision making in HIV prevention, family planning, and malaria programs
Cited by: 14
Author(s): Nirali M. Chakraborty, Rebecca Firestone, Nicole M. Bellows
Software Mentions: 1
Published: over 11 years ago

10.1186/1472-6807-9-54

The cyanobacterial cell division factor Ftn6 contains an N-terminal DnaD-like domain
Cited by: 8
Author(s): Martial Marbouty, Cyril Saguez, Franck Chauvat
Software Mentions: 1
Published: over 15 years ago

10.1186/1472-6807-7-25

Prediction of flexible/rigid regions from protein sequences using k-spaced amino acid pairs
Cited by: 95
Author(s): Ke Chen, Lukasz Kurgan, Jishou Ruan
Software Mentions: 1
Published: over 17 years ago

10.1186/1472-6807-6-8

A tale of two ferredoxins: sequence similarity and structural differences
Cited by: 27
Author(s): S. Sri Krishna, Ruslan I. Sadreyev, Nick V. Grishin
Software Mentions: 1
Published: over 18 years ago

10.1186/1472-6807-13-24

Quantification of the impact of PSI:Biology according to the annotations of the determined structures
Cited by: 1
Author(s): Paul DePietro, Elchin S. Julfayev, William A. McLaughlin
Software Mentions: 1
Published: about 11 years ago

10.1186/1756-0381-2-8

3PFDB - A database of Best Representative PSSM Profiles (BRPs) of Protein Families generated using a novel data mining approach
Cited by: 8
Author(s): Khader Shameer, Nagarajan Paramasivam, Gaurav Kumar, Ramanathan Sowdhamini
Software Mentions: 1
Published: almost 15 years ago

10.1002/bmb.20873

Known structure, unknown function: An inquiry‐based undergraduate biochemistry laboratory course
Cited by: 36
Author(s): Cynthia Gray, Carol W. Price, Christopher T. Lee, Alison H. Dewald, Matthew A. Cline, Charles E. McAnany, Linda Columbus, Cameron Mura
Software Mentions: 1
Published: over 9 years ago

10.6026/97320630014465

Phytochemical derivatives targeting fliJ flagellar protein from Escherichia coli
Cited by: 0
Author(s): Hemalatha Chandrasekaran, P A Abhinand, Maithreyi Suresh Iyer, Benedict Paul, Anupma Jyoti Kindo, Thyagarajan Ravinder, P. Dhanapalan
Software Mentions: 1
Published: almost 6 years ago

10.1186/1745-6150-4-25

The Anabaena sensory rhodopsin transducer defines a novel superfamily of prokaryotic small-molecule binding domains
Cited by: 7
Author(s): Robson Francisco de Souza, Lakshminarayan M. Iyer, L. Aravind
Software Mentions: 1
Published: over 15 years ago

Projects: pypi: PSI

Papers Mentioning PSI 225