Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: PHEnix
https://packages.ecosyste.ms/registries/pypi.org/packages/PHEnix
Public Health England(UK) SNP calling pipeline tools.
2 versions
Latest release: over 6 years ago
21 downloads last month
Papers Mentioning PHEnix 7
10.2807/1560-7917.ES.2019.24.37.1800627
Emergence of diversity in carbapenemase-producing Escherichia coli ST131, England, January 2014 to June 2016Cited by: 18
Author(s): Nicholas Ellaby, Michel Doumith, Katie L. Hopkins, Neil Woodford, Matthew J. Ellington
Software Mentions: 3
Published: about 5 years ago
10.1099/mgen.0.000261
Evaluation of SNP calling methods for closely related bacterial isolates and a novel high-accuracy pipeline: BactSNPCited by: 32
Author(s): Dai Yoshimura, Rei Kajitani, Yasuhiro Gotoh, Katsuyuki Katahira, Miki Okuno, Tetsuya Hayashi, Takehiko Itoh
Software Mentions: 3
Published: over 5 years ago
10.3390/genes10110845
Evolution of Streptococcus pneumoniae Serotype 3 in England and Wales: A Major Vaccine EvaderCited by: 47
Author(s): Natalie Groves, Carmen Sheppard, David Litt, Samuel Rose, Ana Silva, Nina Njoku, Sirlene Souza Rodrigues, Zahin Amin-Chowdhury, Nicholas Andrews, Shamez Ladhani, Norman K. Fry
Software Mentions: 3
Published: almost 5 years ago
10.1038/s41598-020-71207-3
Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolatesCited by: 30
Author(s): Stéphanie Nouws, Bert Bogaerts, Bavo Verhaegen, Sarah Denayer, Denis Piérard, Kathleen Marchal, Nancy Roosens, Kevin Vanneste, Sigrid C. J. De Keersmaecker
Software Mentions: 2
Published: about 4 years ago
10.3390/microorganisms9040767
Phylogenomic Investigation of Increasing Fluoroquinolone Resistance among Belgian Cases of Shigellosis between 2013 and 2018 Indicates Both Travel-Related Imports and Domestic CirculationCited by: 4
Author(s): Bert Bogaerts, Raf Winand, Julien Van Braekel, Wesley Mattheus, Sigrid C. J. De Keersmaecker, Nancy Roosens, Kathleen Marchal, Kevin Vanneste, Pieter‐Jan Ceyssens
Software Mentions: 2
Published: over 3 years ago
10.2807/1560-7917.ES.2019.24.18.1800303
Genetic diversity and delineation of Salmonella Agona outbreak strains by next generation sequencing, Bavaria, Germany, 1993 to 2018Cited by: 14
Author(s): Alexandra Dangel, Anja Berger, Ute Messelhäußer, Regina Konrad, Stefan Hörmansdorfer, Nikolaus Ackermann, Andreas Sing
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0192504
Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:-Cited by: 26
Author(s): Assia Saltykova, Véronique Wuyts, Wesley Mattheus, Sophie Bertrand, Nancy Roosens, Kathleen Marchal, Sigrid C. J. De Keersmaecker
Software Mentions: 1
Published: over 6 years ago