10.1371/journal.ppat.1009773

CXCL1: A new diagnostic biomarker for human tuberculosis discovered using Diversity Outbred mice
Cited by: 15
Author(s): Deniz Koyuncu, M. Khalid Khan Niazi, Thomas E. Tavolara, Claudia Abeijón, Melanie Ginese, Yanghui Liao, Carolyn Mark, Aubrey G. Specht, Adam C. Gower, Blanca I. Restrepo, Daniel M. Gatti, Igor Kramnik, Metin N. Gürcan, Bülent Yener, Gillian Beamer
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.ppat.1008277

Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly
Cited by: 42
Author(s): Robert A. Dick, Chaoyi Xu, Dustin R. Morado, Vladyslav Kravchuk, C.L. Ricana, Terri D. Lyddon, Arianna M. Broad, J. Ryan Feathers, Marc C. Johnson, Volker M. Vogt, Juan R. Perilla, John Briggs, F.K.M. Schur
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0241057

Diversity and structural differences of bacterial microbial communities in rhizocompartments of desert leguminous plants
Cited by: 8
Author(s): Ziyuan Zhou, Minghan Yu, Guodong Ding, Guanglei Gao, Yingying He
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0232453

Characterizing changes in soil microbiome abundance and diversity due to different cover crop techniques
Cited by: 13
Author(s): Charlotte H. Wang, Linda Wu, Zengyan Wang, Magdy S. Alabady, Daniel Parson, Zainab Molumo, Sarah C. Fankhauser
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pgen.1009802

Endothelial lipase mediates efficient lipolysis of triglyceride-rich lipoproteins
Cited by: 12
Author(s): Sumeet A. Khetarpal, Cecilia Vitali, Michael G. Levin, Derek Klarin, Joseph Park, Akhil Pampana, John S. Millar, Takashi Kuwano, Dhavamani Sugasini, Papasani V. Subbaiah, Jeffrey T. Billheimer, Pradeep Natarajan, Daniel J. Rader
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0235763

Comparative transcriptome analysis uncovers different heat stress responses in heat-resistant and heat-sensitive jujube cultivars
Cited by: 17
Author(s): Juan Jin, Lei Yang, Dingyu Fan, Xuxin Liu, Qing Hao
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.ppat.1009734

Divergent metabolism between Trypanosoma congolense and Trypanosoma brucei results in differential sensitivity to metabolic inhibition
Cited by: 10
Author(s): Pieter C. Steketee, Emily A. Dickie, James Iremonger, Kathryn Crouch, Edith Paxton, Siddharth Jayaraman, Omar A. Alfituri, Georgina Awuah‐Mensah, Ryan Ritchie, Achim Schnaufer, T.G. Rowan, Harry P. de Koning, Catarina Gadelha, Bill Wickstead, Michael P. Barrett, Liam J. Morrison
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0251130

Aerial survey estimates of polar bears and their tracks in the Chukchi Sea
Cited by: 9
Author(s): Paul B. Conn, Vladimir I. Chernook, Erin E. Moreland, Irina S. Trukhanova, Eric V. Regehr, A. N. Vasiliev, Ryan R. Wilson, Stanislav Belikov, Peter L. Boveng
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0245525

Water quality assessment and source identification of the Shuangji River (China) using multivariate statistical methods
Cited by: 19
Author(s): Junzhao Liu, Dong Zhang, Qiuju Tang, Hongbin Xu, Shanheng Huang, Dan Shang, Ruxue Liu
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0248320

Plant structural diversity alters sediment retention on and underneath herbaceous vegetation in a flume experiment
Cited by: 6
Author(s): Lena Kretz, Katinka Koll, Carolin Seele‐Dilbat, Fons van der Plas, Alexandra Weigelt, Christian Wirth
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0244692

Impact of diabetes self-management, diabetes management self-efficacy and diabetes knowledge on glycemic control in people with Type 2 Diabetes (T2D): A multi-center study in Thailand
Cited by: 23
Author(s): Cameron Hurst, Nitchamon Rakkapao, Karen Hay
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0246877

Obesity and mortality after the first ischemic stroke: Is obesity paradox real?
Cited by: 21
Author(s): Durgesh Chaudhary, Ayesha Khan, Mudit Gupta, Yirui Hu, Jiang Li, Vida Abedi, Ramin Zand
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pcbi.1007731

AncesTree: An interactive immunoglobulin lineage tree visualizer
Cited by: 13
Author(s): Mathilde Foglierini, Leontios Pappas, Antonio Lanzavecchia, Davide Corti, Laurent Perez
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.ppat.1009768

Trichuris muris infection drives cell-intrinsic IL4R alpha independent colonic RELMα+ macrophages
Cited by: 6
Author(s): Ruth Forman, Larisa Logunova, Hannah Smith, Kelly Wemyss, Iris Mair, Louis Boon, Judith E. Allen, Werner Müller, Joanne L. Pennock, Kathryn J. Else
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pmed.1003115

The association of innate and adaptive immunity, subclinical atherosclerosis, and cardiovascular disease in the Rotterdam Study: A prospective cohort study
Cited by: 24
Author(s): Lana Fani, Kimberly D. van der Willik, Daniël Bos, Maarten J.G. Leening, Peter J. Koudstaal, Dimitris Rizopoulos, Rikje Ruiter, Bruno H. Ch. Stricker, Maryam Kavousi, M. Arfan Ikram
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pntd.0008945

Multi-locus genotyping reveals established endemicity of a geographically distinct Plasmodium vivax population in Mauritania, West Africa
Cited by: 7
Author(s): Hampaté Bâ, Sarah Auburn, Christopher G Jacob, Sónia Gonçalves, Craig W. Duffy, Lindsay B. Stewart, Ric N. Price, Yacine Boubou Deh, M. Diallo, Abderahmane Tandia, Dominic Kwiatkowski, David J. Conway
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pcbi.1008278

Optimising age coverage of seasonal influenza vaccination in England: A mathematical and health economic evaluation
Cited by: 6
Author(s): Edward M. Hill, Stavros Petrou, Henry Forster, Simon de Lusignan, Ivelina Yonova, Matthew James Keeling
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0246689

Can we detect conditioned variation in political speech? two kinds of discussion and types of conversation
Cited by: 2
Author(s): Sabina Sloman, Daniel M. Oppenheimer, Simon DeDeo
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0228206

Mixed evidence for the relationship between periodontitis and Alzheimer’s disease: A bidirectional Mendelian randomization study
Cited by: 20
Author(s): Yi‐Qian Sun, Rebecca C Richmond, Yue Chen, Xiao-Mei Mai
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0255986

Stockpiled personal protective equipment and knowledge of pandemic plans as predictors of perceived pandemic preparedness among German general practitioners
Cited by: 9
Author(s): Arno Stöcker, Ibrahim Demirer, Sophie Gunkel, Jan Hoffmann, Laura Mause, Tim Ohnhäuser, Nadine Scholten
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0238034

An evaluation of bird and bat mortality at wind turbines in the Northeastern United States
Cited by: 12
Author(s): Daniel Choi, Thomas Wittig, Bryan M. Kluever
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0227076

All of gene expression (AOE): An integrated index for public gene expression databases
Cited by: 29
Author(s): Hidemasa Bono
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pntd.0008655

Practical and effective diagnosis of animal anthrax in endemic low-resource settings
Cited by: 14
Author(s): Olubunmi Rhoda Aminu, Tiziana Lembo, Ruth N. Zadoks, Roman Biek, Suzanna Lewis, Ireen Kiwelu, Blandina T Mmbaga, Deogratius Mshanga, Gabriel Shirima, Matt Denwood, Taya Forde
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pntd.0007640

Regulation of hepatic microRNAs in response to early stage Echinococcus multilocularis egg infection in C57BL/6 mice
Cited by: 11
Author(s): Ghalia Boubaker, Sebastian Strempel, Andrew Hemphill, Norbert Müller, Junhua Wang, Bruno Gottstein, Markus Spiliotis
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0250600

Validity concerns with the Revised Study Process Questionnaire (R-SPQ-2F) in undergraduate anatomy & physiology students
Cited by: 5
Author(s): Staci Neas Johnson, Eliza Gallagher, Anna Marie Vagnozzi
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0252004

Effect of mupirocin for Staphylococcus aureus decolonization on the microbiome of the nose and throat in community and nursing home dwelling adults
Cited by: 4
Author(s): Mary-Claire Roghmann, Alison D. Lydecker, Michelle Shardell, Robert T. DeBoy, J. Kristie Johnson, Long Zhao, Lauren Hittle, Emmanuel F. Mongodin
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0236595

Interactions of Segmented Filamentous Bacteria (Candidatus Savagella) and bacterial drivers in colitis-associated colorectal cancer development
Cited by: 4
Author(s): Annie E. Wolfe, Jacob E. Moskowitz, Craig L. Franklin, Timothy Wiemken, Aaron C. Ericsson
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0236771

Transcriptome analysis of sevoflurane exposure effects at the different brain regions
Cited by: 6
Author(s): Hiroto Yamamoto, Yasuzo Uchida, Tomoki Chiba, Ryota Kurimoto, Taijiro Matsushima, Maiko Inotsume, Chihiro Ishikawa, Haiyan Li, Takashi Shiga, Masafumi Muratani, Tatsuo Uchida, Hiroshi Asahara
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0224342

Estimating relative CWD susceptibility and disease progression in farmed white-tailed deer with rare PRNP alleles
Cited by: 24
Author(s): Nicholas J. Haley, Kahla Merrett, Amy Stein, Dennis A. Simpson, Andrew Carlson, Gordon Mitchell, Antanas Staskevicius, Tracy A. Nichols, Aaron Lehmkuhl, Bruce V. Thomsen
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1008914

WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans
Cited by: 29
Author(s): Laetitia Hebert, Tosif Ahamed, Á. S. Costa, Liam O’Shaughnessy, Greg J. Stephens
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0239874

Seasonal patterns of ecological uniqueness of anuran metacommunities along different ecoregions in Western Brazil
Cited by: 7
Author(s): Karoline Ceron, Diego José Santana, Francisco Valente‐Neto
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0241253

CaBagE: A Cas9-based Background Elimination strategy for targeted, long-read DNA sequencing
Cited by: 16
Author(s): Amelia D. Wallace, Thomas A Sasani, Jordan Swanier, Brooke L. Gates, Jeff Greenland, Brent S. Pedersen, Katherine E. Varley, Aaron R. Quinlan
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0235224

A method to estimate population densities and electricity consumption from mobile phone data in developing countries
Cited by: 13
Author(s): Hadrien Salat, Zbigniew Smoreda, Markus Schläpfer
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pntd.0008056

Machine learning and dengue forecasting: Comparing random forests and artificial neural networks for predicting dengue burden at national and sub-national scales in Colombia
Cited by: 33
Author(s): Naizhuo Zhao, Katia Charland, Mabel Carabalí, Elaine O. Nsoesie, Mathieu Maheu‐Giroux, Erin E. Rees, Mengru Yuan, César García Balaguera, Gloria Jaramillo Ramirez, Kate Zinszer
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0230490

Year-round temporal stability of a tropical, urban plant-pollinator network
Cited by: 15
Author(s): Alyssa B. Stewart, Pattharawadee Waitayachart
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0242677

Structures of three MORN repeat proteins and a re-evaluation of the proposed lipid-binding properties of MORN repeats
Cited by: 16
Author(s): Sara Sajko, Irina Grishkovskaya, Július Košťan, Melissa A. Graewert, Kim Setiawan, Linda Trübestein, Korbinian Niedermüller, Charlotte Gehin, Antonio Sponga, Martin Puchinger, Anne‐Claude Gavin, Thomas A. Leonard, D. I. Svergun, Terry Smith, Brooke Morriswood, Kristina Djinović-Carugo
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pcbi.1009227

Relating simulation studies by provenance—Developing a family of Wnt signaling models
Cited by: 5
Author(s): Kai Budde, Jacob Smith, Pia Wilsdorf, Fiete Haack, Adelinde M. Uhrmacher
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0228094

Human and climatic drivers affect spatial fishing patterns in a multiple-use marine protected area: The Galapagos Marine Reserve
Cited by: 14
Author(s): Mauricio Castrejón, Anthony Charles
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0238385

Replicable simulation of distal hot water premise plumbing using convectively-mixed pipe reactors
Cited by: 3
Author(s): Maryellen Spencer, Abraham C. Cullom, William J. Rhoads, Amy Pruden, Marc Edwards
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pntd.0009719

Maxicircle architecture and evolutionary insights into Trypanosoma cruzi complex
Cited by: 6
Author(s): Luisa Berná, Gonzalo Greif, Sebastián Pita, Paula Faral-Tello, Florencia Díaz-Viraqué, Rita de Cássia Moreira de Souza, Gustavo Adolfo Vallejo, Fernando Álvarez-Valín, Carlos Robello
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0242516

The small RNA locus map for Chlamydomonas reinhardtii
Cited by: 4
Author(s): Sebastian Müller, Nicholas E. Matthews, Adrián Vallí, David C. Baulcombe
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0253341

Metaplot: A new Stata module for assessing heterogeneity in a meta-analysis
Cited by: 5
Author(s): Jalal Poorolajal, Shahla Noornejad
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0236679

Characterisation of protein isoforms encoded by the Drosophila Glycogen Synthase Kinase 3 gene shaggy
Cited by: 4
Author(s): Dagmara Korona, Daniel J.H. Nightingale, Bertrand Fabre, Michael G. Nelson, Bettina Fischer, Glynnis Johnson, Jonathan G. Lees, Simon J. Hubbard, Kathryn S. Lilley, Steven Russell
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0240841

Risk screening methods for extreme heat: Implications for equity-oriented adaptation
Cited by: 3
Author(s): Lynée L. Turek-Hankins, Miyuki Hino, Katharine J. Mach
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0254827

Habitat selection by wolves and mountain lions during summer in western Montana
Cited by: 5
Author(s): Collin J. Peterson, Michael S. Mitchell, Nicholas J. DeCesare, Chad J. Bishop, Sarah N. Sells
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0255738

Adenomatous Polyposis Coli loss controls cell cycle regulators and response to paclitaxel in MDA-MB-157 metaplastic breast cancer cells
Cited by: 3
Author(s): Emily Astarita, Sara Maloney, Camden A. Hoover, Bronwyn J. Berkeley, Monica K. VanKlompenberg, T. Murlidharan Nair, Jenifer R. Prosperi
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0245130

Online pragmatic interpretations of scalar adjectives are affected by perceived speaker reliability
Cited by: 4
Author(s): Bethany Gardner, Sadie Dix, Rebecca Lawrence, Cameron Morgan, Anaclare M. Sullivan, Chigusa Kurumada
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0255076

A secondary structure-based position-specific scoring matrix applied to the improvement in protein secondary structure prediction
Cited by: 9
Author(s): Teng Ruei Chen, Sheng Hung Juan, Yu Huang, Lianfang Tian, Wei-Cheng Lo
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0237351

Empirical vs. light-use efficiency modelling for estimating carbon fluxes in a mid-succession ecosystem developed on abandoned karst grassland
Cited by: 5
Author(s): Koffi Dodji Noumonvi, Mitja Ferlan
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.ppat.1009824

pUL21 is a viral phosphatase adaptor that promotes herpes simplex virus replication and spread
Cited by: 12
Author(s): Tomasz H. Benedyk, Julia Muenzner, Viv Connor, Yue Han, Katherine A. Brown, Kaveesha J. Wijesinghe, Yunhui Zhuang, Susanna Colaco, Guido A. Stoll, Owen S. Tutt, Stanislava Svobodova, Dmitri I. Svergun, Neil Bryant, Janet E. Deane, Andrew E. Firth, Cy M. Jeffries, Colin M. Crump, Stephen C. Graham
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pcbi.1009014

Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine
Cited by: 8
Author(s): Qiang Gu, Anup Kumar, Simon Bray, Allison Creason, Alireza Khanteymoori, Vahid Jalili, Björn Grüning, Jeremy Goecks
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0253741

Transcriptome and proteome of the corm, leaf and flower of Hypoxis hemerocallidea (African potato)
Cited by: 0
Author(s): Mihai-Silviu Tomescu, Selisha A. Sooklal, Thuto Ntsowe, Previn Naicker, Barbara Darnhofer, Robert H. Archer, Stoyan Stoychev, Dirk Swanevelder, Ruth Birner‐Grünberger, Karl Rumbold
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.ppat.1009812

Mouse papillomavirus type 1 (MmuPV1) DNA is frequently integrated in benign tumors by microhomology-mediated end-joining
Cited by: 12
Author(s): Lulu Yu, Vladimır Majerčiak, Xiangyang Xue, Aayushi Uberoi, Alexei V. Lobanov, Xiongfong Chen, Maggie Cam, Stephen H. Hughes, Paul F. Lambert, Zhi-Ming Zheng
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0237001

Highs and lows: Genetic susceptibility to daily events
Cited by: 9
Author(s): Maurizio Sicorello, Linda Dieckmann, Dirk Moser, Vanessa Lux, Maike Luhmann, A. Neubauer, Wolff Schlotz, Robert Kumsta
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.ppat.1008401

Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis
Cited by: 35
Author(s): Jérémie Bazin, Kadarkaraisamy Mariappan, Yunhe Jiang, Thomas Blein, Ronny Völz, Martín Crespi, Heribert Hirt
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1009669

Genomic islands targeting dusA in Vibrio species are distantly related to Salmonella Genomic Island 1 and mobilizable by IncC conjugative plasmids
Cited by: 5
Author(s): Romain Durand, Florence Deschênes, Vincent Burrus
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0226691

Distribution of aerophilous diatom communities associated with terrestrial green macroalgae in the South Shetland Islands, Maritime Antarctica
Cited by: 2
Author(s): Juliana Ferreira da Silva, Maria Angélica Oliveira Linton, Raylane Ribeiro da Anunciação, Eduardo Pereira da Silva, Rodrigo Paidano Alves, Adriano Luís Schünemann, Filipe de Carvalho Victória, Margéli Pereira de Albuquerque, Antônio Batista Pereira
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1009349

Acetyltransferase Enok regulates transposon silencing and piRNA cluster transcription
Cited by: 3
Author(s): Shih-Ying Tsai, Fu Huang
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.ppat.1008334

Two waves of pro-inflammatory factors are released during the influenza A virus (IAV)-driven pulmonary immunopathogenesis
Cited by: 32
Author(s): Junsong Zhang, Jun Li, Yuhong Yuan, Feng Huang, Rong Ma, Baohong Luo, Zhihui Xi, Ting Pan, Bingfeng Liu, Yiwen Zhang, Xu Zhang, Yong Luo, Jin Wang, Meng Zhao, Gen Liu, Kai Deng, Hui Zhang
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0231037

Shift work and long work hours and their association with chronic health conditions: A systematic review of systematic reviews with meta-analyses
Cited by: 101
Author(s): Adovich S. Rivera, Maxwell O Akanbi, Linda O’Dwyer, Megan McHugh
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1009370

Protein structural features predict responsiveness to pharmacological chaperone treatment for three lysosomal storage disorders
Cited by: 4
Author(s): Jaie Woodard, Wei Zheng, Zifeng Yang
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pgen.1008464

CRISPR editing of sftb-1/SF3B1 in Caenorhabditis elegans allows the identification of synthetic interactions with cancer-related mutations and the chemical inhibition of splicing
Cited by: 13
Author(s): Xènia Serrat, Dmytro Kukhtar, Eric Cornes, Anna Esteve‐Codina, Helena Benlloch, Germano Cecere, Julián Cerón
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0252226

Diagnostic accuracy of pelvic magnetic resonance imaging for the assessment of bone marrow involvement in diffuse large B-cell lymphoma
Cited by: 2
Author(s): Qing Ke, Chengcheng Liao, Xiaohong Tan, Baoqiang Guo, Hong Cen, Le‐Qun Li
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0255822

Evaluation of the severity of nonalcoholic fatty liver disease through analysis of serum exosomal miRNA expression
Cited by: 5
Author(s): Jeong‐An Gim, Soo Min Bang, Young‐Sun Lee, Sun Young Yim, Young Kul Jung, Hayeon Kim, Baek-hui Kim, Ji Hoon Kim, Yeon Seok Seo, Hyung Joon Yim, Jong Eun Yeon, Soon Ho Um, Kwan Soo Byun
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0250022

Community-based conservation with formal protection provides large collateral benefits to Amazonian migratory waterbirds
Cited by: 7
Author(s): João Vitor Campos‐Silva, Carlos A. Peres, Joseph E. Hawes, Mark I. Abrahams, Paulo César Machado Andrade, L. Davenport
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0254852

Ward-level factors associated with methicillin-resistant Staphylococcus aureus acquisition–an electronic medical records study in Singapore
Cited by: 2
Author(s): Zaw Tun, Dale Fisher, Sharon Salmon, Clarence C. Tam
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pcbi.1008310

Graph neural fields: A framework for spatiotemporal dynamical models on the human connectome
Cited by: 12
Author(s): Marco Aqil, Selen Atasoy, Morten L. Kringelbach, Rikkert Hindriks
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0223514

Diagnostic accuracy of midkine on hepatocellular carcinoma: A meta-analysis
Cited by: 8
Author(s): Bo-Han Zhang, Bo Li, Lingxiang Kong, Lvnan Yan, Jiayin Yang
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0233182

Over 13,000 elements from a single bonebed help elucidate disarticulation and transport of an Edmontosaurus thanatocoenosis
Cited by: 2
Author(s): Keith Snyder, Matthew A. McLain, Jared P. Wood, Arthur V. Chadwick
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0239026

Impact of COVID-19 epidemic curtailment strategies in selected Indian states: An analysis by reproduction number and doubling time with incidence modelling
Cited by: 14
Author(s): Arun Mitra, Abhijit Pakhare, Adrija Roy, Ankur Joshi
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0232384

Socio-ecological network structures from process graphs
Cited by: 11
Author(s): Angelyn R. Lao, Heriberto Cabezas, Ákos Orosz, Ferenc Friedler, Raymond R. Tan
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0242941

Effects of transcranial magnetic stimulation over the left posterior superior temporal gyrus on picture-word interference
Cited by: 2
Author(s): Vitória Piai, Laura Nieberlein, Gesa Hartwigsen
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0237894

Emerging fungal pathogen of an invasive grass: Implications for competition with native plant species
Cited by: 4
Author(s): Amy E. Kendig, Vida J. Svahnström, Ashish Adhikari, Philip F. Harmon, S. Luke Flory
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0228687

Pre-analytical error for three point of care venous blood testing platforms in acute ambulatory settings: A mixed methods service evaluation
Cited by: 3
Author(s): Thomas R Fanshawe, Margaret Glogowska, George Edwards, P Turner, Ian Smith, Rosie Steele, Caroline Croxson, John M. Bowen, Gail Hayward
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0240135

Post-competition recovery strategies in elite male soccer players. Effects on performance: A systematic review and meta-analysis
Cited by: 18
Author(s): Albert Altarriba-Bartés, Javier Peña, Jordi Vicens-Bordas, Raimon Milà-Villaroel, Julio Calleja-González
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0238071

Research data sharing in the Australian national science agency: Understanding the relative importance of organisational, disciplinary and domain-specific influences
Cited by: 4
Author(s): Claire M. Mason, Paul Box, Shanae M. Burns
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0256605

Development of strategic social information seeking: Implications for cumulative culture
Cited by: 2
Author(s): Kirsten H. Blakey, Eva Rafetseder, Mark Atkinson, Elizabeth Renner, Fía Cowan-Forsythe, Shivani J. Sati, Christine A. Caldwell
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0247553

What cancer research makes the news? A quantitative analysis of online news stories that mention cancer studies
Cited by: 5
Author(s): Laura Moorhead, Melinda Krakow, Lauren A. Maggio
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0228108

Community-intrinsic properties enhance keratin degradation from bacterial consortia
Cited by: 15
Author(s): Poonam Nasipuri, Jakob Herschend, Asker Brejnrod, Jonas Stenløkke Madsen, Roall Espersen, Birte Svensson, Mette Burmølle, Samuel Jacquiod, Søren J. Sørensen
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pntd.0009346

Spatiotemporal distribution of cutaneous leishmaniasis in Sri Lanka and future case burden estimates
Cited by: 8
Author(s): Nadira D. Karunaweera, Sanath Senanayake, Samitha Ginige, Hermali Silva, Nuwani Manamperi, Nilakshi Samaranayake, Rajika Dewasurendra, Panduka Karunanayake, Deepa Gamage, Nissanka de Silva, Upul Senarath, Guofa Zhou
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0249792

Face masks reduce emotion-recognition accuracy and perceived closeness
Cited by: 130
Author(s): Felix Grundmann, Kai Epstude, Susanne Scheibe
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0241209

Pediatric emergency care in a low-income country: Characteristics and outcomes of presentations to a tertiary-care emergency department in Mozambique
Cited by: 6
Author(s): Valentina Brugnolaro, Laura Nai Fovino, Serena Calgaro, Giovanni Putoto, Arlindo Muhelo, Darío Gregori, Danila Azzolina, Silvia Bressan, Liviana Da Dalt
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0233808

Fine-scale genomic analyses of admixed individuals reveal unrecognized genetic ancestry components in Argentina
Cited by: 20
Author(s): Pierre Luisi, Angelina García, Juan Manuel Berros, Josefina María Brenda Motti, Darío Alfredo Demarchi, Emma Alfaro, Eliana Aquilano, Carina F. Argüelles, Sergio Alejandro Avena, Graciela Bailliet, Julieta Beltramo, Cláudio M. Bravi, Mariela Cuello, Cristina Beatriz Dejean, José Edgardo Dipierri, Laura Smeldy Jurado Medina, José Luis Lanata, Marina Muzzio, María Laura Parolin, Maia Pauro, Paula B. Paz Sepúlveda, Daniela Rodríguez Golpe, Maria Rita de Morais Chaves Santos, Marisol Schwab, Natalia Silvero, Jeremías Enrique Zubrzycki, Virgínia Ramallo, Hernán Dopazo
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0236791

Eradicating the large white butterfly from New Zealand eliminates a threat to endemic Brassicaceae
Cited by: 6
Author(s): C.B. Phillips, Kerry Brown, Christopher Green, Richard Toft, G.P. Walker, Keith Broome
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0252686

Governance quality indicators for organ procurement policies
Cited by: 6
Author(s): David Rodríguez‐Arias, Alberto Molina Pérez, Ivar R. Hannikainen, Janet Delgado, Benjamin Söchtig, Sabine Wöhlke, Silke Schicktanz
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0256956

Exploring the topology and dynamic growth properties of co-invention networks and technology fields
Cited by: 2
Author(s): Pablo E. Pinto, Guillermo Honores, Andrés Vallone
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0243915

On transformative adaptive activation functions in neural networks for gene expression inference
Cited by: 5
Author(s): Vladimír Kunc, Jǐŕı Kléma
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0231122

Direct and indirect effects of land-use intensity on plant communities across elevation in semi-natural grasslands
Cited by: 8
Author(s): Oksana Y. Buzhdygan, Britta Tietjen, Svitlana Rudenko, Volodymyr A. Nikorych, Jana S. Petermann
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0233627

Development syndromes in New World temperate and tropical songbirds
Cited by: 6
Author(s): Suzanne H. Austin, W. Douglas Robinson, Tara Rodden Robinson, Vincenzo A. Ellis, Robert E. Ricklefs
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0230941

Demarcating geographic regions using community detection in commuting networks with significant self-loops
Cited by: 14
Author(s): Mark He, Joseph Glasser, Nathaniel Pritchard, Shankar Bhamidi, Nikhil Kaza
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0251262

Predictors for inpatient mortality during the first wave of the SARS-CoV-2 pandemic: A retrospective analysis
Cited by: 6
Author(s): Daniel E. Sammartino, Farrukh N Jafri, Brennan Cook, Lisa La, Hye Min Kim, John Cardasis, Joshua P. Raff
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0243595

Extreme value theory as a framework for understanding mutation frequency distribution in cancer genomes
Cited by: 2
Author(s): Natsuki Tokutomi, Kenta Nakai, Sumio Sugano
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0242940

Development of a minimal KASP marker panel for distinguishing genotypes in apple collections
Cited by: 7
Author(s): Mark Winfield, Amanda Burridge, Matthew Ordidge, Helen Harper, Paul Wilkinson, Daniel Thorogood, Liz Copas, Keith J. Edwards, Gary Barker
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0247257

Multi-omic analysis of stroke recurrence in African Americans from the Vitamin Intervention for Stroke Prevention (VISP) clinical trial
Cited by: 3
Author(s): Nicole M. Davis Armstrong, Kelsey J. Spragley, Weimin Chen, Fang‐Chi Hsu, Michael S. Brewer, Patrick J. Horn, Stephen R. Williams, Michèle M. Sale, Bradford B. Worrall, Keith L. Keene
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0232120

Corticosterone and testosterone treatment influence expression of gene pathways linked to meiotic segregation in preovulatory follicles of the domestic hen
Cited by: 2
Author(s): E. Wróbel, Alexandra B. Bentz, W. Walter Lorenz, Steven T. Gardner, Mary T. Mendonça, Kristen J. Navara
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0248459

Evaluating the effect of stand properties and site conditions on the forest reflectance from Sentinel-2 time series
Cited by: 9
Author(s): Ewa Grabska, Jarosław Socha
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0248489

Enhanced streamflow prediction with SWAT using support vector regression for spatial calibration: A case study in the Illinois River watershed, U.S.
Cited by: 10
Author(s): Liang Yuan, Kenneth J. Forshay
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0245103

Disease progression of 213 patients hospitalized with Covid-19 in the Czech Republic in March–October 2020: An exploratory analysis
Cited by: 1
Author(s): Martin Modrák, Paul - Christian Bürkner, Tomáš Sieger, Tomás Slisz, Martina Vašáková, Grigorij Mesežnikov, Luis Fernando Casas-Mendez, Jaromír Vajter, J Táborský, Viktor Kubricht, Daniel Suk, Jan Horejsek, M. Jedlička, Adriana Mifková, Adam Jaroš, Miroslav Kubiska, Jana Váchalová, Robin Šín, Markéta Veverková, Zbysek Pospísil, Julie Vohryzková, Rebeka Pokrievková, Kristián Hrusák, Kristína Christozova, Vianey Leos‐Barajas, Karel Fišer, Tomáš Hyánek
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pcbi.1008984

Gene name errors: Lessons not learned
Cited by: 14
Author(s): Mandhri Abeysooriya, Megan Soria, Mary Sravya Kasu, Mark Ziemann
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pcbi.1008219

A simple, scalable approach to building a cross-platform transcriptome atlas
Cited by: 12
Author(s): Paul W. Angel, Nadia Rajab, Yidi Deng, Chris M. Pacheco, Tyrone Chen, Kim‐Anh Lê Cao, Jarny Choi, Christine A. Wells
Software Mentions: 4
Published: almost 5 years ago