Ecosyste.ms: Papers

10.1371/journal.pone.0256956

Exploring the topology and dynamic growth properties of co-invention networks and technology fields
Cited by: 2
Author(s): Pablo E. Pinto, Guillermo Honores, Andrés Vallone
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.ppat.1009768

Trichuris muris infection drives cell-intrinsic IL4R alpha independent colonic RELMα+ macrophages
Cited by: 6
Author(s): Ruth Forman, Larisa Logunova, Hannah Smith, Kelly Wemyss, Iris Mair, Louis Boon, Judith E. Allen, Werner Müller, Joanne L. Pennock, Kathryn J. Else
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0254730

Microbial assemblages and methanogenesis pathways impact methane production and foaming in manure deep-pit storages
Cited by: 2
Author(s): Fan Yang, Daniel S. Andersen, Steven Trabue, Angela D. Kent, Laura M. Pepple, Richard S. Gates, Adina Howe
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0233808

Fine-scale genomic analyses of admixed individuals reveal unrecognized genetic ancestry components in Argentina
Cited by: 20
Author(s): Pierre Luisi, Angelina García, Juan Manuel Berros, Josefina María Brenda Motti, Darío Alfredo Demarchi, Emma Alfaro, Eliana Aquilano, Carina F. Argüelles, Sergio Alejandro Avena, Graciela Bailliet, Julieta Beltramo, Cláudio M. Bravi, Mariela Cuello, Cristina Beatriz Dejean, José Edgardo Dipierri, Laura Smeldy Jurado Medina, José Luis Lanata, Marina Muzzio, María Laura Parolin, Maia Pauro, Paula B. Paz Sepúlveda, Daniela Rodríguez Golpe, Maria Rita de Morais Chaves Santos, Marisol Schwab, Natalia Silvero, Jeremías Enrique Zubrzycki, Virgínia Ramallo, Hernán Dopazo
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pgen.1009221

Short-range template switching in great ape genomes explored using pair hidden Markov models
Cited by: 10
Author(s): Conor R Walker, Aylwyn Scally, Nicola De Maio, Nick Goldman
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.ppat.1009812

Mouse papillomavirus type 1 (MmuPV1) DNA is frequently integrated in benign tumors by microhomology-mediated end-joining
Cited by: 12
Author(s): Lulu Yu, Vladimır Majerčiak, Xiangyang Xue, Aayushi Uberoi, Alexei V. Lobanov, Xiongfong Chen, Maggie Cam, Stephen H. Hughes, Paul F. Lambert, Zhi-Ming Zheng
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pgen.1009713

Multitrait GWAS to connect disease variants and biological mechanisms
Cited by: 12
Author(s): Hanna Julienne, Vincent Laville, Zachary R. McCaw, Zihuai He, Vincent Guillemot, Carla Lasry, Andrey Ziyatdinov, Cyril Nerin, Amaury Vaysse, Pierre Lechat, Hervé Ménager, Wilfried Le Goff, Marie‐Pierre Dubé, Peter Kraft, Iuliana Ionita‐Laza, Bjarni J. Vilhjálmsson, Hugues Aschard
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0228188

Precision medicine and actionable alterations in lung cancer: A single institution experience
Cited by: 7
Author(s): Isa Mambetsariev, Yingyu Wang, Chen Chen, Sorena Nadaf, Rebecca Pharaon, Jeremy Fricke, Idoroenyi Amanam, Arya Amini, Andrea Bild, Peiguo Chu, Loretta Erhunmwunsee, Jae Kim, Janet Munu, Raju Pillai, Dan J. Raz, Sagus Sampath, Lalitkumar K. Vora, Fang Qiu, Lynette M. Smith, Surinder K. Batra, Erminia Massarelli, Marianna Koczywas, Karen L. Reckamp, Ravi Salgia
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0247630

The effect of growth rate on otolith-based discrimination of cod (Gadus morhua) ecotypes
Cited by: 2
Author(s): Einar Pétur Jónsson, Steven E. Campana, Jón Sólmundsson, Klara B. Jakobsdóttir, Hlynur Bárðarson
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.ppat.1008401

Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis
Cited by: 35
Author(s): Jérémie Bazin, Kadarkaraisamy Mariappan, Yunhe Jiang, Thomas Blein, Ronny Völz, Martín Crespi, Heribert Hirt
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0242520

On the agreement between bibliometrics and peer review: Evidence from the Italian research assessment exercises
Cited by: 5
Author(s): Alberto Baccini, Lucio Barabesi, Giuseppe De Nicolao
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0240177

Understanding American premium chocolate consumer perception of craft chocolate and desirable product attributes using focus groups and projective mapping
Cited by: 13
Author(s): Allison Brown, Alyssa J. Bakke, Helene Hopfer
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0254562

DNA methylation analyses identify an intronic ZDHHC6 locus associated with time to recurrent stroke in the Vitamin Intervention for Stroke Prevention (VISP) clinical trial
Cited by: 4
Author(s): Nicole M. Davis Armstrong, Weimin Chen, Fang‐Chi Hsu, Michael S. Brewer, Natàlia Cullell, Israel Fernández‐Cadenas, Stephen R. Williams, Michèle M. Sale, Bradford B. Worrall, Keith L. Keene
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.ppat.1009773

CXCL1: A new diagnostic biomarker for human tuberculosis discovered using Diversity Outbred mice
Cited by: 15
Author(s): Deniz Koyuncu, M. Khalid Khan Niazi, Thomas E. Tavolara, Claudia Abeijón, Melanie Ginese, Yanghui Liao, Carolyn Mark, Aubrey G. Specht, Adam C. Gower, Blanca I. Restrepo, Daniel M. Gatti, Igor Kramnik, Metin N. Gürcan, Bülent Yener, Gillian Beamer
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0236728

The prevalence of psychiatric symptoms before the diagnosis of Parkinson’s disease in a nationwide cohort: A comparison to patients with cerebral infarction
Cited by: 9
Author(s): Szabolcs Szatmári, András Ajtay, Ferenc Oberfrank, Balázs Dobi, Dániel Bereczki
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pntd.0008295

Molecular surveillance over 14 years confirms reduction of Plasmodium vivax and falciparum transmission after implementation of Artemisinin-based combination therapy in Papua, Indonesia
Cited by: 8
Author(s): Zuleima Pava, Agatha M. Puspitasari, Angela Rumaseb, Irene Handayuni, Leily Trianty, Retno A. S. Utami, Yusrifar K. Tirta, Faustina Helena Burdam, Enny Kenangalem, Grennady Wirjanata, Steven Kho, Hidayat Trimarsanto, Nicholas M. Anstey, Jeanne Rini Poespoprodjo, Rintis Noviyanti, Ric N. Price, Jutta Marfurt, Sarah Auburn
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0235752

Stable isotope analysis of multiple tissues from Hawaiian honeycreepers indicates elevational movement
Cited by: 5
Author(s): Kristina L. Paxton, Jeffery F Kelly, Sandra M Pletchet, Eben H. Paxton
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0242061

List-wise learning to rank biomedical question-answer pairs with deep ranking recursive autoencoders
Cited by: 4
Author(s): Yan Yan, Bowen Zhang, Xufeng Li, Zhenhan Liu
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0245064

Racial and geographic variation in effects of maternal education and neighborhood-level measures of socioeconomic status on gestational age at birth: Findings from the ECHO cohorts
Cited by: 19
Author(s): Anne L. Dunlop, Alicynne Glazier Essalmi, Lyndsay Alvalos, Carrie V. Breton, Carlos A. Camargo, Whitney Cowell, Dana Dabelea, Stephen R. Dager, Cristiane S. Duarte, Amy J. Elliott, Raina N. Fichorova, James E. Gern, Monique M. Hedderson, Elizabeth Hom Thepaksorn, Kathi Huddleston, Margaret R. Karagas, Ken Kleinman, Leslie D. Leve, Ximin Li, Yijun Li, Augusto A. Litonjua, Yunin Ludena-Rodriguez, Juliette C. Madan, Julio Mateus Nino, Cynthia McEvoy, Thomas G. O’Connor, Amy Padula, Nigel Paneth, Frederica P. Perera, Sheela Sathyanarayana, Rebecca J. Schmidt, Robert T. Schultz, Jessica Snowden, Joseph B. Stanford, Leonardo Trasande, Heather E. Volk, William Wheaton, Rosalind J. Wright, Monica McGrath
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0245596

Space-time smoothing of mortality estimates in children aged 5-14 in Sub-Saharan Africa
Cited by: 1
Author(s): Benjamin-Samuel Schlüter, Bruno Masquelier
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0235741

Changes in infant non-nutritive sucking throughout a suck sample at 3-months of age
Cited by: 6
Author(s): Emily Zimmerman, Thomas Carpenito, Alaina Martens
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0245756

Birds of a feather moult together: Differences in moulting distribution of four species of storm-petrels
Cited by: 4
Author(s): Anne N. M. A. Ausems, Grzegorz Skrzypek, Katarzyna Wojczulanis‐Jakubas, Dariusz Jakubas
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0237288

First evidence for an aposematic function of a very common color pattern in small insects
Cited by: 0
Author(s): Rebeca Mora-Castro, Marcela Alfaro-Córdoba, Marcela Hernández-Jiménez, Mauricio Fernández Otárola, Michael Méndez-Rivera, Didier Ramírez-Morales, Carlos E. Rodríguez-Rodríguez, Andrés Durán-Rodríguez, Paul Hanson
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0219633

Contributions to human breast milk microbiome and enteromammary transfer of Bifidobacterium breve
Cited by: 72
Author(s): Kattayoun Kordy, Thaidra Gaufin, Martin Mwangi, Ли Фан, Chiara Cerini, Dong Hoon Lee, Helty Adisetiyo, Cora L. Woodward, Pia S. Pannaraj, Nicole H. Tobin, Grace M. Aldrovandi
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0230931

Motivation to access laparoscopic skills training: Results of a Canadian survey of obstetrics and gynecology residents
Cited by: 4
Author(s): Jocelyn Stairs, Bradley W. Bergey, Finlay Maguire, Stephanie Scott
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0233597

Diversification rate vs. diversification density: Decoupled consequences of plant height for diversification of Alooideae in time and space
Cited by: 9
Author(s): Florian C. Boucher, Anne-Sophie Quatela, Allan G. Ellis, G. Anthony Verboom
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pgen.1009164

The PAX-FOXO1s trigger fast trans-differentiation of chick embryonic neural cells into alveolar rhabdomyosarcoma with tissue invasive properties limited by S phase entry inhibition
Cited by: 7
Author(s): Gloria González Curto, Audrey Der Vartanian, Youcef El-Mokhtar Frarma, Line Manceau, Lorenzo Baldi, Selene Prisco, Nabila Elarouci, Frédéric Causeret, Daniil Korenkov, Muriel Rigolet, Frédéric Auradé, Aurélien de Reyniès, Vincent Contremoulins, Frédéric Relaix, Orestis Faklaris, James Briscoe, Pascale Gilardi-Hebenstreit, Vanessa Ribes
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0246869

Uniting against a common enemy: Perceived outgroup threat elicits ingroup cohesion in chimpanzees
Cited by: 8
Author(s): James Brooks, Ena Onishi, Isabelle R. Clark, Manuel Bohn, Shinya Yamamoto
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pgen.1009448

Recent loss of the Dim2 DNA methyltransferase decreases mutation rate in repeats and changes evolutionary trajectory in a fungal pathogen
Cited by: 27
Author(s): Mareike Möller, Michael Habig, Cécile Lorrain, Alice Feurtey, Janine Haueisen, Wagner C. Fagundes, A. Alizadeh, Michael Freitag, Eva H. Stukenbrock
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0235868

Cover crop mixture expression is influenced by nitrogen availability and growing degree days
Cited by: 13
Author(s): Bàrbara Baraibar, Ebony G. Murrell, Brosi A. Bradley, Mary E. Barbercheck, David A. Mortensen, Jason P. Kaye, Charles M. White
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0255298

Northern bobwhite select for shrubby thickets interspersed in grasslands during fall and winter
Cited by: 2
Author(s): Alisha R. Mosloff, Mitch D. Weegman, Frank R. Thompson, Thomas R. Thompson
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0248341

Quantity and quality: Normative open-access neuroimaging databases
Cited by: 2
Author(s): S.J.S. Isherwood, Pierre‐Louis Bazin, Anneke Alkemade, Birte U. Forstmann
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0238124

Elderly patients with cancer admitted to intensive care unit: A multicenter study in a middle-income country
Cited by: 0
Author(s): Antônio Paulo Nassar, Mariane da Silva Trevisani, Bárbara Beltrame Bettim, Fernando G. Zampieri, José Albani Carvalho, Amílton Silva, Flávio Geraldo Rezende Freitas, José Roberto Aparecido dos Santos Pinto, Edson Romano, Sílvia Regina Ramos, Guilherme Brenande Alves Faria, Ulysses V. Andrade e Silva, Robson Correa Santos, Edmundo de Oliveira Tommasi, Ana Paula Pierre de Moraes, Bruno Azevedo da Cruz, Fernando A. Bozza, Pedro Caruso, Jorge I. Salluh, Márcio Soares
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pgen.1009036

Polygenic risk for autism spectrum disorder associates with anger recognition in a neurodevelopment-focused phenome-wide scan of unaffected youths from a population-based cohort
Cited by: 5
Author(s): Frank R. Wendt, Carolina Muniz Carvalho, Gita A Pathak, Joel Gelernter, Renato Polimanti
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0245589

Efficient neural spike sorting using data subdivision and unification
Cited by: 3
Author(s): Masood Hassan, Rakesh Veerabhadrappa, Asim Bhatti
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0245222

Early Holocene Scandinavian foragers on a journey to affluence: Mesolithic fish exploitation, seasonal abundance and storage investigated through strontium isotope ratios by laser ablation (LA‐MC-ICP‐MS)
Cited by: 9
Author(s): Adam Boëthius, Mathilda Kjällquist, Melanie Kielman‐Schmitt, Torbjörn Ahlström, Lars Larsson
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0256353

Uncovering the genomic and metagenomic research potential in old ethanol-preserved snakes
Cited by: 6
Author(s): Claus M. Zacho, Martina Abenhus Bager, Ashot Margaryan, Peter Gravlund, Anders Galatius, Arne Redsted Rasmussen, Morten E. Allentoft
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0238202

Immune and sex-biased gene expression in the threatened Mojave desert tortoise, Gopherus agassizii
Cited by: 2
Author(s): Cindy Xu, Greer A. Dolby, K. Kristina Drake, Todd C. Esque, Kenro Kusumi
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0223031

Lipidomics analysis of juveniles’ blue mussels (Mytilus edulis L. 1758), a key economic and ecological species
Cited by: 13
Author(s): Vincenzo Alessandro Laudicella, Christine Beveridge, Stefano Carboni, Sofia C. Franco, Mary K. Doherty, Nina Long, Elaine Mitchell, Michele S. Stanley, Phillip D. Whitfield, Adam D. Hughes
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0239827

Impact of a candidate vaccine on the dynamics of salmon lice (Lepeophtheirus salmonis) infestation and immune response in Atlantic salmon (Salmo salar L.)
Cited by: 16
Author(s): Jaya Kumari Swain, Yamila Carpio, Lill-Heidi Johansen, Janet Velázquez, Liz Hernández, Yeny Leal, Ajey Kumar, Mario Pablo Estrada
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pgen.1009440

A more accurate method for colocalisation analysis allowing for multiple causal variants
Cited by: 87
Author(s): Chris Wallace
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0227161

Assessing trends and vulnerabilities in the mutualism between whitebark pine (Pinus albicaulis) and Clark’s nutcracker (Nucifraga columbiana) in national parks of the Sierra-Cascade region
Cited by: 2
Author(s): Chris Ray, Regina M. Rochefort, Jason I. Ransom, Jonathan C. B. Nesmith, Sylvia Haultain, Taza D. Schaming, John R. Boetsch, Mandy L Holmgren, Robert L. Wilkerson, Rodney B. Siegel
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0229531

Frailty predicts surgical complications after kidney transplantation. A propensity score matched study
Cited by: 19
Author(s): Milena dos Santos Mantovani, Nyara Coelho de Carvalho, Thomáz Archangelo, Luís Gustavo Modelli de Andrade, Sebastião Pires Ferreira Filho, Ricardo de Souza Cavalcante, Paulo Roberto Kawano, Sílvia Justina Papini, Nara Aline Costa, Ricardo Augusto Monteiro de Barros Almeida
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0227825

Detection and density of breeding marsh birds in Iowa wetlands
Cited by: 1
Author(s): Rachel A. Vanausdall, Stephen J. Dinsmore
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0250413

Exploring the relationship between maternal prenatal stress and brain structure in premature neonates
Cited by: 6
Author(s): Alexandra Lautarescu, Laila Hadaya, Michael C. Craig, Antonis Makropoulos, Dafnis Batallé, Chiara Nosarti, A. David Edwards, Serena Counsell, Suresh Victor
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0244408

Genome-wide association study and pathway analysis identify NTRK2 as a novel candidate gene for litter size in sheep
Cited by: 13
Author(s): Seyed Mehdi Esmaeili-Fard, Mohsen Gholizadeh, Seyed Hasan Hafezian, Rostam Abdollahi-Arpanahi
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0237108

Comparison of microbiota in the cloaca, colon, and magnum of layer chicken
Cited by: 10
Author(s): Seo-Jin Lee, Seongwoo Cho, Tae-Min La, Hong-Jae Lee, Joong‐Bok Lee, Seung‐Yong Park, Chang‐Seon Song, In‐Soo Choi
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0246508

Relationships between fox populations and rabies virus spread in northern Canada
Cited by: 17
Author(s): Susan A. Nadin-Davis, Emilie Falardeau, Alex Flynn, Hugh Whitney, H. Dawn Marshall
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0235263

Visualisation tools for dependent peptide searches to support the exploration of in vitro protein modifications
Cited by: 2
Author(s): George W. Preston, Liping Yang, David H. Phillips, Claudia S. Maier
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0232436

Keep Garfagnina alive. An integrated study on patterns of homozygosity, genomic inbreeding, admixture and breed traceability of the Italian Garfagnina goat breed
Cited by: 9
Author(s): Christos Dadousis, Francesca Cecchi, Michela Ablondi, Maria Chiara Fabbri, Alessandra Stella, Rıccardo Bozzi
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0231125

Analysis of circulating-microRNA expression in lactating Holstein cows under summer heat stress
Cited by: 14
Author(s): Jihwan Lee, Mi Kyung Lee, Jun-Kyu Son, Hyeonju Lim, Euntae Kim, Dong-Hyun Kim, Seungmin Ha, Tai-Young Hur, Seung Hwan Lee, Inchul Choi
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0250338

Die-off of plant pathogenic bacteria in tile drainage and anoxic water from a managed aquifer recharge site
Cited by: 5
Author(s): Carina Eisfeld, J.M. van der Wolf, Boris M. van Breukelen, Gertjan Medema, J. Velstra, Jack Schijven
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0231840

Commercial integrated crop-livestock systems achieve comparable crop yields to specialized production systems: A meta-analysis
Cited by: 37
Author(s): Caitlin A. Peterson, Leonardo Deiss, Amélie C. M. Gaudin
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0240585

The mediating effects of public genomic knowledge in precision medicine implementation: A structural equation model approach
Cited by: 2
Author(s): John J O Mogaka, Moses John Chimbari
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pgen.1008617

Inhibition of the oligosaccharyl transferase in Caenorhabditis elegans that compromises ER proteostasis suppresses p38-dependent protection against pathogenic bacteria
Cited by: 8
Author(s): Dae‐Eun Jeong, Yujin Lee, Seokjin Ham, Dong-Yeop Lee, Sujeong Kwon, Hae‐Eun H. Park, Sunyoung Hwang, Joo‐Yeon Yoo, Tae-Young Roh, Seung-Jae Lee
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0255675

Machine-learning model selection and parameter estimation from kinetic data of complex first-order reaction systems
Cited by: 3
Author(s): László Zimányi, Áron Sipos, Ferenc Sarlós, Rita Nagypál, Géza I. Groma
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pntd.0008233

The estimated burden of scrub typhus in Thailand from national surveillance data (2003-2018)
Cited by: 24
Author(s): Tri Wangrangsimakul, Ivo Elliott, Supalert Nedsuwan, Rawadee Kumlert, Soawapak Hinjoy, Kittipong Chaisiri, Nicholas P. J. Day, Sergé Morand
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pntd.0008235

Persistence of Brucella abortus lineages revealed by genomic characterization and phylodynamic analysis
Cited by: 11
Author(s): Marcela Suárez-Esquivel, Gabriela Hernández-Mora, Nazareth Ruíz-Villalobos, Elías Barquero-Calvo, Carlos Chacón-Díaz, Jason T. Ladner, Gerardo Oviedo-Sánchez, Jeffrey T. Foster, Norman Rojas‐Campos, Esteban Chaves-Olarte, Nicholas R. Thomson, Edgardo Moreno, Caterina Guzmán-Verri
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.ppat.1009734

Divergent metabolism between Trypanosoma congolense and Trypanosoma brucei results in differential sensitivity to metabolic inhibition
Cited by: 10
Author(s): Pieter C. Steketee, Emily A. Dickie, James Iremonger, Kathryn Crouch, Edith Paxton, Siddharth Jayaraman, Omar A. Alfituri, Georgina Awuah‐Mensah, Ryan Ritchie, Achim Schnaufer, T.G. Rowan, Harry P. de Koning, Catarina Gadelha, Bill Wickstead, Michael P. Barrett, Liam J. Morrison
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.ppat.1009824

pUL21 is a viral phosphatase adaptor that promotes herpes simplex virus replication and spread
Cited by: 12
Author(s): Tomasz H. Benedyk, Julia Muenzner, Viv Connor, Yue Han, Katherine A. Brown, Kaveesha J. Wijesinghe, Yunhui Zhuang, Susanna Colaco, Guido A. Stoll, Owen S. Tutt, Stanislava Svobodova, Dmitri I. Svergun, Neil Bryant, Janet E. Deane, Andrew E. Firth, Cy M. Jeffries, Colin M. Crump, Stephen C. Graham
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0255977

A machine learning approach to predict extreme inactivity in COPD patients using non-activity-related clinical data
Cited by: 1
Author(s): B. Aguilaniu, David J. Hess, É. Kelkel, Amandine Briault, Marie Destors, Jacques Boutros, Pei Zhi Li, Anestis Antoniadis
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0235370

Experimental methodologies can affect pathogenicity of Batrachochytrium salamandrivorans infections
Cited by: 5
Author(s): Rajeev Kumar, Daniel A. Malagon, Edward Davis Carter, Debra L. Miller, Markese Bohanon, J. Patrick W. Cusaac, Anna C. Peterson, Matthew J. Gray
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.ppat.1008277

Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly
Cited by: 42
Author(s): Robert A. Dick, Chaoyi Xu, Dustin R. Morado, Vladyslav Kravchuk, C.L. Ricana, Terri D. Lyddon, Arianna M. Broad, J. Ryan Feathers, Marc C. Johnson, Volker M. Vogt, Juan R. Perilla, John Briggs, F.K.M. Schur
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0247534

Lettuce (Lactuca sativa) productivity influenced by microbial inocula under nitrogen-limited conditions in aquaponics
Cited by: 9
Author(s): Jessica A. Day, Christian Diener, Anne E. Otwell, Kourtney E. Tams, Brad M. Bebout, Angela M. Detweiler, Michael Lee, Madeline T. Scott, Wilson Ta, Monica Ha, Shienna A. Carreon, Kenny Tong, Abdirizak A. Ali, Sean M. Gibbons, Nitin S. Baliga
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.ppat.1008334

Two waves of pro-inflammatory factors are released during the influenza A virus (IAV)-driven pulmonary immunopathogenesis
Cited by: 32
Author(s): Junsong Zhang, Jun Li, Yuhong Yuan, Feng Huang, Rong Ma, Baohong Luo, Zhihui Xi, Ting Pan, Bingfeng Liu, Yiwen Zhang, Xu Zhang, Yong Luo, Jin Wang, Meng Zhao, Gen Liu, Kai Deng, Hui Zhang
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0227667

Redefining transcriptional regulation of the APOE gene and its association with Alzheimer’s disease
Cited by: 25
Author(s): Eun-Gyung Lee, Jessica Tulloch, Sunny Chen, Lesley Leong, Aleen Saxton, Brian C. Kraemer, Martin Darvas, C. Dirk Keene, Andrew Shutes‐David, Kaitlin Todd, Steve Millard, Chang‐En Yu
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0237351

Empirical vs. light-use efficiency modelling for estimating carbon fluxes in a mid-succession ecosystem developed on abandoned karst grassland
Cited by: 5
Author(s): Koffi Dodji Noumonvi, Mitja Ferlan
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0231510

Analyses of cancer incidence and other morbidities in gamma irradiated B6CF1 mice
Cited by: 7
Author(s): Alia Zander, Tatjana Paunesku, Gayle E. Woloschak
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pntd.0009357

Mark-release-recapture of male Aedes aegypti (Diptera: Culicidae): Use of rhodamine B to estimate movement, mating and population parameters in preparation for an incompatible male program
Cited by: 10
Author(s): Brendan J Trewin, Dan Pagendam, Brian J. Johnson, Chris Paton, Nigel Snoad, Scott A. Ritchie, Kyran M. Staunton, Bradley J. White, Sara N. Mitchell, Nigel W. Beebe
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0252686

Governance quality indicators for organ procurement policies
Cited by: 6
Author(s): David Rodríguez‐Arias, Alberto Molina Pérez, Ivar R. Hannikainen, Janet Delgado, Benjamin Söchtig, Sabine Wöhlke, Silke Schicktanz
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pntd.0007743

Transcriptome of the parasitic flatworm Schistosoma mansoni during intra-mammalian development
Cited by: 19
Author(s): Arporn Wangwiwatsin, Anna V. Protasio, Shona Wilson, Christian Owusu, Nancy Holroyd, Mandy Sanders, Jacqueline A. Keane, Michael J. Doenhoff, Gabriel Rinaldi, Matthew Berriman
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0251366

Inequality indices to monitor geographic differences in incidence, mortality and fatality rates over time during the COVID-19 pandemic
Cited by: 4
Author(s): Kirsi Manz, Ulrich Mansmann
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0247257

Multi-omic analysis of stroke recurrence in African Americans from the Vitamin Intervention for Stroke Prevention (VISP) clinical trial
Cited by: 3
Author(s): Nicole M. Davis Armstrong, Kelsey J. Spragley, Weimin Chen, Fang‐Chi Hsu, Michael S. Brewer, Patrick J. Horn, Stephen R. Williams, Michèle M. Sale, Bradford B. Worrall, Keith L. Keene
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0253741

Transcriptome and proteome of the corm, leaf and flower of Hypoxis hemerocallidea (African potato)
Cited by: 0
Author(s): Mihai-Silviu Tomescu, Selisha A. Sooklal, Thuto Ntsowe, Previn Naicker, Barbara Darnhofer, Robert H. Archer, Stoyan Stoychev, Dirk Swanevelder, Ruth Birner‐Grünberger, Karl Rumbold
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pgen.1009734

Recovery from heat shock requires the microRNA pathway in Caenorhabditis elegans
Cited by: 10
Author(s): Delaney C Pagliuso, Devavrat M Bodas, Amy E. Pasquinelli
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0234142

The child’s pantheon: Children’s hierarchical belief structure in real and non-real figures
Cited by: 5
Author(s): Rohan Kapitány, Nicole L. Nelson, Emily Burdett, Thalia R. Goldstein
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pgen.1009097

Diversified regulation of circadian clock gene expression following whole genome duplication
Cited by: 9
Author(s): Alexander C. West, Marianne Iversen, Even H. Jørgensen, Simen Rød Sandve, David G. Hazlerigg, Shona H. Wood
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0248489

Enhanced streamflow prediction with SWAT using support vector regression for spatial calibration: A case study in the Illinois River watershed, U.S.
Cited by: 10
Author(s): Liang Yuan, Kenneth J. Forshay
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0250510

American crocodiles (Crocodylus acutus) as restoration bioindicators in the Florida Everglades
Cited by: 4
Author(s): Venetia Briggs-González, Mathieu Basille, Michael S. Cherkiss, Frank J. Mazzotti
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0237277

Causal graph analysis of COVID-19 observational data in German districts reveals effects of determining factors on reported case numbers
Cited by: 14
Author(s): Edgar Steiger, Tobias Mussgnug, Lars Eric Kroll
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0239874

Seasonal patterns of ecological uniqueness of anuran metacommunities along different ecoregions in Western Brazil
Cited by: 7
Author(s): Karoline Ceron, Diego José Santana, Francisco Valente‐Neto
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0243595

Extreme value theory as a framework for understanding mutation frequency distribution in cancer genomes
Cited by: 2
Author(s): Natsuki Tokutomi, Kenta Nakai, Sumio Sugano
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0232639

Computed tomography-derived radiomic signature of head and neck squamous cell carcinoma (peri)tumoral tissue for the prediction of locoregional recurrence and distant metastasis after concurrent chemo-radiotherapy
Cited by: 27
Author(s): Simon Keek, Sebastian Sanduleanu, Frederik Wesseling, Reinout de Roest, Michiel W. M. van den Brekel, Martijn van der Heijden, Conchita Vens, Giuseppina Calareso, Lisa Licitra, Kathrin Scheckenbach, Marije R. Vergeer, C. René Leemans, Ruud H. Brakenhoff, Irene Nauta, Stefano Cavalieri, Henry C. Woodruff, Tito Poli, Ralph T.H. Leijenaar, Frank Hoebers, Philippe Lambin
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0230941

Demarcating geographic regions using community detection in commuting networks with significant self-loops
Cited by: 14
Author(s): Mark He, Joseph Glasser, Nathaniel Pritchard, Shankar Bhamidi, Nikhil Kaza
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0250022

Community-based conservation with formal protection provides large collateral benefits to Amazonian migratory waterbirds
Cited by: 7
Author(s): João Vitor Campos‐Silva, Carlos A. Peres, Joseph E. Hawes, Mark I. Abrahams, Paulo César Machado Andrade, L. Davenport
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0232273

The role of meteorological factors on mumps incidence among children in Guangzhou, Southern China
Cited by: 12
Author(s): Jianyun Lu, Zhicong Yang, Xiaowei Ma, Mengmeng Ma, Zhoubin Zhang
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0233951

Predicting biomass of rice with intermediate traits: Modeling method combining crop growth models and genomic prediction models
Cited by: 14
Author(s): Yusuke Toda, Hitomi Wakatsuki, Toru Aoike, Hiromi Kajiya‐Kanegae, Mariko Yamasaki, Takuma Yoshioka, Kaworu Ebana, Takeshi Hayashi, Hiroshi Nakagawa, Toshihiro Hasegawa, Hiroyoshi Iwata
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pgen.1009770

The genetics and evolution of eye color in domestic pigeons (Columba livia)
Cited by: 5
Author(s): Si Si, Xiao Xu, Yan Zhuang, Xiao‐Dong Gao, Honghai Zhang, Zhengting Zou, Shu‐Jin Luo
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0244532

Mortality and other outcomes of patients with coronavirus disease pneumonia admitted to the emergency department: A prospective observational Brazilian study
Cited by: 19
Author(s): Rodrigo Antônio Brandão Neto, Júlio Flávio Meirelles Marchini, Lucas Oliveira Marino, Julio César García de Alencar, Felippe Lazar Neto, Sabrina Corrêa da Costa Ribeiro, Fernando Salvetti Valente, Hassan Rahhal, Luz Marina Gómez Gómez, Cauê Gasparotto Bueno, Carine C. Faria, Valdeci da Cunha, Eduardo Messias Hirano Padrão, Irineu Tadeu Velasco, Heraldo Possolo de Souza
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0235833

Main and interacting effects of physical activity and sedentary time on older adults’ BMI: The moderating roles of socio-demographic and environmental attributes
Cited by: 5
Author(s): Delfien Van Dyck, Anthony Barnett, Jelle Van Cauwenberg, Casper J. P. Zhang, Cindy H.P. Sit, Ester Cerin
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0237001

Highs and lows: Genetic susceptibility to daily events
Cited by: 9
Author(s): Maurizio Sicorello, Linda Dieckmann, Dirk Moser, Vanessa Lux, Maike Luhmann, A. Neubauer, Wolff Schlotz, Robert Kumsta
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0253814

Mortality and morbidity of asthma and chronic obstructive pulmonary disease associated with ambient environment in metropolitans in Taiwan
Cited by: 9
Author(s): Yasmin Zafirah, Yu‐Kai Lin, Gerry Andhikaputra, Liwen Deng, Fung‐Chang Sung, Yu Chun Wang
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0255370

Inclusion of photoautotrophic cultivated diatom biomass in salmon feed can deter lice
Cited by: 2
Author(s): Hans Christian Eilertsen, Edel O. Elvevoll, Ingeborg Hulda Giæver, Jon Brage Svenning, Lars Dalheim, Ragnhild Aven Svalheim, Birthe Vang, Sten Ivar Siikavuopio, Ragnhild Dragøy, Richard Andre Ingebrigtsen, Espen Hansen, Anette Hustad, Karl‐Erik Eilertsen
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0243915

On transformative adaptive activation functions in neural networks for gene expression inference
Cited by: 5
Author(s): Vladimír Kunc, Jǐŕı Kléma
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0231122

Direct and indirect effects of land-use intensity on plant communities across elevation in semi-natural grasslands
Cited by: 8
Author(s): Oksana Y. Buzhdygan, Britta Tietjen, Svitlana Rudenko, Volodymyr A. Nikorych, Jana S. Petermann
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0242940

Development of a minimal KASP marker panel for distinguishing genotypes in apple collections
Cited by: 7
Author(s): Mark Winfield, Amanda Burridge, Matthew Ordidge, Helen Harper, Paul Wilkinson, Daniel Thorogood, Liz Copas, Keith J. Edwards, Gary Barker
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0249254

Large-scale analysis of SARS-CoV-2 spike-glycoprotein mutants demonstrates the need for continuous screening of virus isolates
Cited by: 32
Author(s): Barbara Schrörs, Pablo Riesgo-Ferreiro, Patrick Sorn, Ranganath Gudimella, Thomas Bukur, Thomas W. Rösler, Martin Löwer, Uğur Şahin
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0251502

“Know your epidemic, know your response”: Epidemiological assessment of the substance use disorder crisis in the United States
Cited by: 8
Author(s): Andrés Hernández, Minxuan Lan, Neil J. MacKinnon, Adam J. Branscum, Diego F. Cuadros
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0250787

A dynamic Bayesian network model for predicting organ failure associations without predefining outcomes
Cited by: 2
Author(s): R. A. De Blasi, Giuseppe Campagna, Stefano Finazzi
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0232384

Socio-ecological network structures from process graphs
Cited by: 11
Author(s): Angelyn R. Lao, Heriberto Cabezas, Ákos Orosz, Ferenc Friedler, Raymond R. Tan
Software Mentions: 4
Published: over 4 years ago