Projects: pypi: PACE
https://packages.ecosyste.ms/registries/pypi.org/packages/PACE
Data Quality of Experimental Data
10 versions
Latest release: over 10 years ago
51 downloads last month
Enhanced Analysis
Repository Activity:
README Analysis:
Science Score: 90/100
Starting Score: 100 points
Bonuses:
-
+6
Science terms in README
3 scientific terms found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem
Very Likely Science (90)
Papers Mentioning PACE 13,779
10.1371/journal.ppat.1008989
Selective usage of ANP32 proteins by influenza B virus polymerase: Implications in determination of host rangeCited by: 15
Author(s): Zhenyu Zhang, Haili Zhang, Xu Li, Xing Guo, Wenfei Wang, Yujie Ji, Chin-Yo Lin, Yujie Wang, Xiaojun Wang
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1009017
A non-canonical role for the autophagy machinery in anti-retroviral signaling mediated by TRIM5αCited by: 11
Author(s): Bhaskar Saha, Devon Chisholm, Alison Kell, Michael A. Mandell
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1009020
Brucella suppress STING expression via miR-24 to enhance infectionCited by: 17
Author(s): Mike Khan, Jerome S. Harms, Yiping Liu, Jens Eickhoff, Jin Tan, Tony Hu, Fengwei Cai, Erika S. Guimarães, Sérgio C. Oliveira, Richard Dahl, Yong Cheng, Delia Gutman, Glen N. Barber, Gary A. Splitter, Judith A. Smith
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1009027
Astrocytes promote a protective immune response to brain Toxoplasma gondii infection via IL-33-ST2 signalingCited by: 25
Author(s): Katherine M. Still, Samantha J. Batista, Carleigh A. O’Brien, Oyebola O. Oyesola, Simon Früh, Lauren M. Webb, Igor Smirnov, Michael A. Kovacs, Maureen N. Cowan, Nikolas W. Hayes, Jeremy Thompson, Elia D. Tait Wojno, Tajie H. Harris
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1008529
Triclosan depletes the membrane potential in Pseudomonas aeruginosa biofilms inhibiting aminoglycoside induced adaptive resistanceCited by: 11
Author(s): Michael M. Maiden, Christopher M. Waters
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1008932
Veterinary trypanocidal benzoxaboroles are peptidase-activated prodrugsCited by: 15
Author(s): Federica Giordani, Daniel Paape, Isabel M. Vincent, Andrew W. Pountain, Fernando Fernández-Cortés, Eva Rico, Ning Zhang, Liam J. Morrison, Yvonne R. Freund, Michael Witty, Rose Peter, Darren Edwards, Jonathan M. Wilkes, Justin J. J. van der Hooft, Clément Regnault, Kevin D. Read, David Horn, Mark C. Field, Michael P. Barrett
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.ppat.1009119
A small molecule that mitigates bacterial infection disrupts Gram-negative cell membranes and is inhibited by cholesterol and neutral lipidsCited by: 15
Author(s): Jamie L. Dombach, Joaquin L. J. Quintana, Toni A. Nagy, Chunrong Wan, Amy L. Crooks, Haijia Yu, Chih‐Chia Su, Edward Yu, Jingshi Shen, Corrella S. Detweiler
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.ppat.1008602
The serogroup B meningococcal outer membrane vesicle-based vaccine 4CMenB induces cross-species protection against Neisseria gonorrhoeaeCited by: 39
Author(s): Isabelle Leduc, Kristie L. Connolly, Afrin A. Begum, Knashka Underwood, Stephen C. Darnell, William M. Shafer, Jacqueline T. Balthazar, Andrew N. Macintyre, Gregory D. Sempowski, Joseph A. Duncan, Marguerite B. Little, Nazia Rahman, Eric Garges, Ann E. Jerse
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.ppat.1009104
Distinct polymorphisms in a single herpesvirus gene are capable of enhancing virulence and mediating vaccinal resistanceCited by: 16
Author(s): Andelé M. Conradie, Luca D. Bertzbach, Jakob Trimpert, Joseph Patria, Motoo Shiro, Mark S. Parcells, Benedikt B. Kaufer
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.ppat.1009019
S100A4+ macrophages facilitate zika virus invasion and persistence in the seminiferous tubules via interferon-gamma mediationCited by: 16
Author(s): Wei Yang, Yongfeng Wu, Shuangqing Liu, Ziyang Sheng, Zi-Da Zhen, Ruiqi Gao, Xiaoyun Cui, Dongying Fan, Zhihai Qin, Aihua Zheng, Peigang Wang, Jing An
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.ppat.1009163
mRNA induced expression of human angiotensin-converting enzyme 2 in mice for the study of the adaptive immune response to severe acute respiratory syndrome coronavirus 2Cited by: 23
Author(s): Mariah Hassert, Elizabeth Geerling, E. Taylor Stone, Tara L. Steffen, Madi S. Feldman, Alexandria Dickson, Jacob Class, Justin M. Richner, James D. Brien, Amelia K. Pinto
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.ppat.1008893
Bacterial behavior in human blood reveals complement evaders with some persister-like featuresCited by: 16
Author(s): Stéphane Pont, Nathan Fraikin, Yvan Caspar, Laurence Van Melderen, Ina Attrée, François Cretin
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.ppat.1009131
Multiple blood feeding in mosquitoes shortens the Plasmodium falciparum incubation period and increases malaria transmission potentialCited by: 42
Author(s): W. Robert Shaw, Inga Holmdahl, Maurice A. Itoe, Kristine Werling, Meghan Marquette, Douglas G. Paton, Naresh Singh, Caroline O. Buckee, Lauren M. Childs, Flaminia Catteruccia
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.ppat.1009066
T cells in the brain enhance neonatal mortality during peripheral LCMV infectionCited by: 2
Author(s): Laurie L. Kenney, Erik P. Carter, Anna Gil, Liisa K. Selin
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.ppat.1009061
Independent genomic polymorphisms in the PknH serine threonine kinase locus during evolution of the Mycobacterium tuberculosis Complex affect virulence and host preferenceCited by: 3
Author(s): Elena Mata, DJ Farrell, Ruoyao Ma, Santiago Uranga, Alberto Gómez Gómez, Marta Monzón, Juan José Badiola, Alberto Anel, Jesús Gonzalo-Asensio, Carlos Martín, Stephen V. Gordon, Nacho Aguiló
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.ppat.1009121
IL-33 facilitates rapid expulsion of the parasitic nematode Strongyloides ratti from the intestine via ILC2- and IL-9-driven mast cell activationCited by: 24
Author(s): Jana Meiners, Martina Reitz, Nikolas Rüdiger, Jan-Eric Turner, Lennart Heepmann, Lena Rudolf, Wiebke Hartmann, Henry J. McSorley, Minka Breloer
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.ppat.1009148
Directed evolution reveals the mechanism of HitRS signaling transduction in Bacillus anthracisCited by: 4
Author(s): Huifeng Pi, Michelle Chu, Samuel J. Ivan, Casey J. Latario, Allen M. Toth, Sophia M. Carlin, Gideon H. Hillebrand, Hannah K. Lin, Jared D. Reppart, Devin L. Stauff, Eric P. Skaar
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.ppat.1008771
Toxoplasma gondii PPM3C, a secreted protein phosphatase, affects parasitophorous vacuole effector exportCited by: 11
Author(s): Joshua Mayoral, Tadakimi Tomita, Vincent Tu, Jennifer Aguilan, Simone Sidoli, Louis M. Weiss
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.ppat.1009179
Kaposi’s sarcoma-associated herpesvirus latency-associated nuclear antigen dysregulates expression of MCL-1 by targeting FBW7Cited by: 11
Author(s): Yeong Jun Kim, Yuri Kim, Abhishek Kumar, Chan Woo Kim, Zsolt Tóth, Nam Hyuk Cho, Hye‐Ra Lee
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.ppat.1009219
In vivo antagonistic role of the Human T-Cell Leukemia Virus Type 1 regulatory proteins Tax and HBZCited by: 13
Author(s): Abdou Akkouche, Sara Moodad, Rita Hleihel, Hala Skayneh, Séverine Chambeyron, Hiba El Hajj, Ali Bazarbachi
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.ppat.1009067
A single Na+-Pi cotransporter in Toxoplasma plays key roles in phosphate import and control of parasite osmoregulationCited by: 7
Author(s): Beejan Asady, Cláudia F. Dick, Karen Ehrenman, Tejram Sahu, Julia D. Romano, Isabelle Coppens
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.ppat.1008770
Red-light is an environmental effector for mutualism between begomovirus and its vector whiteflyCited by: 19
Author(s): Pingzhi Zhao, Xuan Zhang, Yuqing Gong, Duan Wang, Dongqing Xu, Ning Wang, Yanwei Sun, Lianbo Gao, Shu‐Sheng Liu, Xing Wang Deng, Daniel J. Kliebenstein, Xin Zhou, Rongxiang Fang, Jian Ye
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.ppat.1009177
T-cell responses to sequentially emerging viral escape mutants shape long-term HIV-1 population dynamicsCited by: 4
Author(s): Tomohiro Akahoshi, Hiroyuki Gatanaga, Nozomi Kuse, Takayuki Chikata, Madoka Koyanagi, Naoki Ishizuka, Chanson J. Brumme, Hayato Murakoshi, Zabrina L. Brumme, Shinichi Oka, Masafumi Takiguchi
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.ppat.1009194
Bacterial dormancy: A subpopulation of viable but non-culturable cells demonstrates better fitness for revivalCited by: 31
Author(s): Sariqa Wagley, Helen Morcrette, Andrea Kovacs-Simon, Zheng Yang, Aidan Power, Richard K. Tennant, John Love, Neil Murray, Richard W. Titball, Catherine Butler
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.ppat.1009212
Hydroxychloroquine-mediated inhibition of SARS-CoV-2 entry is attenuated by TMPRSS2Cited by: 157
Author(s): Tianling Ou, Huihui Mou, Lizhou Zhang, Amrita Ojha, Hyeryun Choe, Michael Farzan
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.ppat.1009213
Naturally occurring substitution in one amino acid in VHSV phosphoprotein enhances viral virulence in flounderCited by: 3
Author(s): Jee Youn Hwang, Unn Hwa Lee, Min Jin Heo, Min Sun Kim, Ji Min Jeong, So Yeon Kim, Mun‐Gyeong Kwon, Bo Young Jee, Ki Hong Kim, Chan-Il Park, Jeong Woo Park
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.ppat.1009199
In vivo nanoscale analysis of the dynamic synergistic interaction of Bacillus thuringiensis Cry11Aa and Cyt1Aa toxins in Aedes aegyptiCited by: 10
Author(s): Samira López-Molina, Nathaly Alexandre do Nascimento, Maria Helena Neves Lobo Silva-Filha, Adán Guerrero, Jorge Sánchez, Sabino Pacheco, Sarjeet S. Gill, Mário Soberón, Alejandra Bravo
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.ppat.1009164
A lysine ring in HIV capsid pores coordinates IP6 to drive mature capsid assemblyCited by: 25
Author(s): Nadine Renner, Donna L. Mallery, K. M. Rifat Faysal, Peng Wang, D.A. Jacques, Till Böcking, Leo C. James
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.ppat.1009239
An Alba-domain protein required for proteome remodelling during trypanosome differentiation and host transitionCited by: 8
Author(s): Shubha Bevkal, Arunasalam Naguleswaran, Ruth Rehmann, Marcel Kaiser, Manfred Heller, Isabel Roditi
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.ppat.1009749
Targeting human langerin promotes HIV-1 specific humoral immune responsesCited by: 6
Author(s): Jérôme Kervevan, Aurélie Bouteau, Juliane Sousa Lanza, Adele Hammoudi, Sandra Zurawski, Mathieu Surénaud, Lydie Dieudonné, Marion Bonnet, Cécile Lefebvre, Hakim Hocini, Romain Marlin, Aurélie Guguin, Barbara Hersant, Oana Hermeziu, Elisabeth Menu, Christine Lacabaratz, Jean‐Daniel Lelièvre, Gérard Zurawski, Véronique Godot, Sandrine Henri, Botond Z. Igyártó, Yves Lévy, Sylvain Cardinaud
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.ppat.1009797
A novel heteromeric pantothenate kinase complex in apicomplexan parasitesCited by: 9
Author(s): Erick T. Tjhin, Vanessa M. Howieson, Christina Spry, Giel G. van Dooren, Kevin J. Saliba
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.ppat.1009848
Blocking HSV-1 glycoprotein K binding to signal peptide peptidase reduces virus infectivity in vitro and in vivoCited by: 2
Author(s): Shaohui Wang, Ujjaldeep Jaggi, Jack Yu, Homayon Ghiasi
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.ppat.1009427
Intranasal type I interferon treatment is beneficial only when administered before clinical signs onset in the SARS-CoV-2 hamster modelCited by: 33
Author(s): Pierre Bessière, Marine Wasniewski, Evelyne Picard-Meyer, Alexandre Servat, Thomas Figueroa, Charlotte Foret‐Lucas, Amelia Coggon, Sandrine Lesellier, Frank Boué, Nathan Cebron, Blandine Gausserès, Catherine Trumel, Gilles Foucras, Francisco J. Salguero, Élodie Monchâtre-Leroy, Romain Volmer
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.ppat.1009806
Loss of Septation Initiation Network (SIN) kinases blocks tissue invasion and unlocks echinocandin cidal activity against Aspergillus fumigatusCited by: 7
Author(s): Ana Camila Oliveira Souza, Adela Martín‐Vicente, Ashley V. Nywening, Wenbo Ge, David J. Lowes, Brian M. Peters, Jarrod R. Fortwendel
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.ppat.1009837
Exosomal miR-224 contributes to hemolymph microbiota homeostasis during bacterial infection in crustaceanCited by: 12
Author(s): Yi Gong, Xiaoyuan Wei, Wanwei Sun, Xin Ren, Jiao Chen, Jude Juventus Aweya, Hongyu Ma, Kok‐Gan Chan, Yueling Zhang, Shengkang Li
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.ppat.1009803
The degree of polymerization and sulfation patterns in heparan sulfate are critical determinants of cytomegalovirus entry into host cellsCited by: 15
Author(s): Dipanwita Mitra, Mohammad S Hasan, John T. Bates, Michael A. Bierdeman, Dallas R. Ederer, Rinkuben Parmar, Lauren A Fassero, Quntao Liang, Hong Qiu, Vaibhav Tiwari, Fuming Zhang, Robert J. Linhardt, Joshua S. Sharp, Lianchun Wang, Ritesh Tandon
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.ppat.1009800
SARS-CoV-2 suppresses IFNβ production mediated by NSP1, 5, 6, 15, ORF6 and ORF7b but does not suppress the effects of added interferonCited by: 60
Author(s): Maya Shemesh, Turgut E. Aktepe, Joshua M. Deerain, Julie McAuley, Michelle D. Audsley, Cassandra T. David, Damian F. J. Purcell, Victoria Urin, Rune Hartmann, Gregory W. Moseley, Jason M. Mackenzie, Gideon Schreiber, Daniel Harari
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009379
The redox-responsive transcriptional regulator Rex represses fermentative metabolism and is required for Listeria monocytogenes pathogenesisCited by: 7
Author(s): Cortney R. Halsey, Rochelle C. Glover, Maureen K. Thomason, Michelle L. Reniere
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009541
Herpes simplex virus 2 (HSV-2) evolves faster in cell culture than HSV-1 by generating greater genetic diversityCited by: 4
Author(s): Alberto Domingo López-Muñoz, Alberto Rastrojo, Rocı́o Martı́n, Antonio Alcamı́
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009868
NK cells eliminate Epstein-Barr virus bound to B cells through a specific antibody-mediated uptakeCited by: 11
Author(s): Elisenda Alari-Pahissa, Michelle Ataya, Ilias Moraitis, Miriam Campos-Ruiz, Mireia Altadill, Aura Muntasell, Anna Moles, Miguel López‐Botet
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009878
Differential plasmacytoid dendritic cell phenotype and type I Interferon response in asymptomatic and severe COVID-19 infectionCited by: 49
Author(s): Martina Severa, Roberta Antonia Diotti, Marilena P. Etna, Fabiana Rizzo, Stefano Fiore, Daniela Ricci, Marco Iannetta, Alessandro Sinigaglia, Alessandra Lodi, Nicasio Mancini, Elena Criscuolo, Massimo Clementi, Massimo Andreoni, Stefano Balducci, Luisa Barzon, Paola Stefanelli, Nicola Clementi, Eliana M. Coccia
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009736
Antibody responses induced by SHIV infection are more focused than those induced by soluble native HIV-1 envelope trimers in non-human primatesCited by: 15
Author(s): Jelle van Schooten, Marlies M. van Haaren, Hui Li, Laura E McCoy, Colin Havenar-Daughton, Christopher A. Cottrell, Judith A. Burger, Patricia van der Woude, Leanne C. Helgers, Ilhan Tomris, Celia C. LaBranche, David C. Montefiori, Andrew B. Ward, Dennis R. Burton, John P. Moore, Rogier W. Sanders, Shane Crotty, George M. Shaw, Marit J. van Gils
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009835
Coordinated action of multiple transporters in the acquisition of essential cationic amino acids by the intracellular parasite Toxoplasma gondiiCited by: 5
Author(s): Stephen J. Fairweather, Esther Rajendran, Martin Blume, Kiran Javed, Birte Steinhöfel, Malcolm J. McConville, Kiaran Kirk, Stefan Bröer, Giel G. van Dooren
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009846
The Drosophila Baramicin polypeptide gene protects against fungal infectionCited by: 27
Author(s): Mark A. Hanson, Lianne B. Cohen, Alice Marra, Igor Iatsenko, Steven A. Wasserman, Bruno Lemaître
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009840
Discovery of re-purposed drugs that slow SARS-CoV-2 replication in human cellsCited by: 15
Author(s): Adam Pickard, Ben Calverley, Joan Chang, Richa Garva, Sara Gago, Yinhui Lu, Karl E. Kadler
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009879
Avian influenza A virus susceptibility, infection, transmission, and antibody kinetics in European starlingsCited by: 7
Author(s): Jeremy W. Ellis, J. Jeffrey Root, Loredana M. McCurdy, Kevin T. Bentler, Nicole L. Barrett, Kaci K. VanDalen, Katherine L. Dirsmith, Susan A. Shriner
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009902
A kinase-independent function of PAK is crucial for pathogen-mediated actin remodellingCited by: 6
Author(s): Anthony C. Davidson, Joe Tyler, Peter Hume, Vikash Singh, Vassilis Koronakis
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009425
Disruption of the Pseudomonas aeruginosa Tat system perturbs PQS-dependent quorum sensing and biofilm maturation through lack of the Rieske cytochrome bc1 sub-unitCited by: 7
Author(s): Eliza Ye-Chen Soh, Frances J.D. Smith, Maxime Rémi Gimenez, Liang Yang, Rebecca Munk Vejborg, Matthew P. Fletcher, Nigel Halliday, Sophie Bleves, Stephan Heeb, Miguel Cámara, Michael Givskov, Kim R. Hardie, Tim Tolker‐Nielsen, Bérengère Ize, Paul Williams
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009321
Rab11a mediates cell-cell spread and reassortment of influenza A virus genomes via tunneling nanotubesCited by: 9
Author(s): Ketaki Ganti, Julianna Han, Balaji Manicassamy, Anice C. Lowen
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009888
The opportunistic intracellular bacterial pathogen Rhodococcus equi elicits type I interferon by engaging cytosolic DNA sensing in macrophagesCited by: 7
Author(s): Krystal J. Vail, Bibiana Petri da Silveira, Samantha L. Bell, Noah D. Cohen, Angela I. Bordin, Kristin L. Patrick, Robert O. Watson
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009842
Broadly directed SARS-CoV-2-specific CD4+ T cell response includes frequently detected peptide specificities within the membrane and nucleoprotein in patients with acute and resolved COVID-19Cited by: 36
Author(s): Janna Heide, Sophia Schulte, Matin Kohsar, Thomas Theo Brehm, Marissa Herrmann, Hendrik Karsten, Matthias Marget, Sven Peine, Alexandra M. Johansson, Alessandro Sette, Marc Lütgehetmann, William W. Kwok, John Sidney, Julian Schulze zur Wiesch
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009909
Elucidating the mechanism by which synthetic helper peptides sensitize Pseudomonas aeruginosa to multiple antibioticsCited by: 13
Author(s): Yushan Xia, Rubén Cebrián, Congjuan Xu, Anne de Jong, Weihui Wu, Oscar P. Kuipers
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009918
Histone demethylase LSD1 promotes RIG-I poly-ubiquitination and anti-viral gene expressionCited by: 1
Author(s): Qi-Xin Hu, Hui-Yi Wang, Lu Jiang, Chenyu Wang, Lingao Ju, Yuan Zhu, Bo Zhong, Min Wu, Zhen Wang, Lianyun Li
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009847
Kaposi’s sarcoma-associated herpesvirus promotes mesenchymal-to-endothelial transition by resolving the bivalent chromatin of PROX1 geneCited by: 8
Author(s): Yiliang Ding, Weikang Chen, Zhengzhou Lu, Yan Wang, Yan Yuan
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009917
The regulation landscape of MAPK signaling cascade for thwarting Bacillus thuringiensis infection in an insect hostCited by: 31
Author(s): Zhixin Guo, Shi Kang, Qingjun Wu, Shaoli Wang, N. Crickmore, Xuguo Zhou, Alejandra Bravo, Mário Soberón, Youjun Zhang
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009633
Teaching a new mouse old tricks: Humanized mice as an infection model for Variola virusCited by: 3
Author(s): Christina L. Hutson, Ashley V. Kondas, Jana M. Ritter, Zachary Reed, Sharon Dietz Ostergaard, Clint N. Morgan, Nadia Gallardo-Romero, Cassandra Tansey, Matthew R. Mauldin, Johanna S. Salzer, Christine M. Hughes, Cynthia S. Goldsmith, Darin S. Carroll, Victoria A. Olson
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009932
The type 3 secretion system requires actin polymerization to open translocon poresCited by: 8
Author(s): Brian C. Russo, Jeffrey K. Duncan-Lowey, Poyin Chen, Marcia B. Goldberg
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009927
Host phospholipid peroxidation fuels ExoU-dependent cell necrosis and supports Pseudomonas aeruginosa-driven pathologyCited by: 10
Author(s): Salimata Bagayoko, Stephen Adonai Leon-Icaza, Miriam Pinilla, Audrey Hessel, Karin Santoni, David Péricat, Pierre-Jean Bordignon, Flavie Moreau, Elif Eren, A. Boyance, Emmanuelle Näser, Lise Lefèvre, Céline Berrone, Nino Iakobachvili, Arnaud Métais, Yoann Rombouts, Geanncarlo Lugo‐Villarino, Agnès Coste, Ina Attrée, Dara W. Frank, Hans Clevers, Peter J. Peters, Céline Cougoule, Rémi Planès, Étienne Meunier
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009880
Commensal bacteria augment Staphylococcus aureus infection by inactivation of phagocyte-derived reactive oxygen speciesCited by: 6
Author(s): Josie Gibson, Grace R. Pidwill, Oliver Carnell, Bas G. J. Surewaard, Daria Shamarina, Joshua A. F. Sutton, Charlotte Jeffery, Aurélie Derré-Bobillot, Cristel Archambaud, Matthew K. Siggins, Eric J. G. Pollitt, Simon A. Johnston, Pascale Serror, Shiranee Sriskandan, Stephen A. Renshaw, Simon J. Foster
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009954
The Epstein-Barr virus deubiquitinating enzyme BPLF1 regulates the activity of topoisomerase II during productive infectionCited by: 7
Author(s): Jinlin Li, Noémi Nagy, Jiangnan Liu, Soham Gupta, Teresa Frisan, Thomas Hennig, Donald P. Cameron, Laura Baranello, Maria G. Masucci
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009493
Phagocytes produce prostaglandin E2 in response to cytosolic Listeria monocytogenesCited by: 3
Author(s): Courtney E McDougal, Zachary Morrow, T. Christopher, Seonyoung Kim, Drake Carter, David Stevenson, Daniel Amador‐Noguez, Mark J. Miller, John-Demian Sauer
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009277
Experimental and mathematical insights on the interactions between poliovirus and a defective interfering genomeCited by: 13
Author(s): Yuta Shirogane, Elsa Rousseau, Jakub Voznica, Yinghong Xiao, Weiheng Su, Adam Catching, Zachary J. Whitfield, Igor M. Rouzine, Simone Bianco, Raul Andino
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009929
In vitro selection of Remdesivir resistance suggests evolutionary predictability of SARS-CoV-2Cited by: 93
Author(s): Agnieszka M. Szemiel, Andres Merits, Richard Orton, Oscar A MacLean, Rute Maria Pinto, Arthur Wickenhagen, Gauthier Lieber, Matthew L. Turnbull, Sainan Wang, Wilhelm Furnon, Nicolás M. Suárez, Daniel Mair, Ana da Silva Filipe, Brian J. Willett, Sam J. Wilson, Arvind H. Patel, Emma C. Thomson, Massimo Palmarini, Alain Kohl, Meredith Stewart
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.ppat.1009963
eIF4A, a target of siRNA derived from rice stripe virus, negatively regulates antiviral autophagy by interacting with ATG5 in Nicotiana benthamianaCited by: 10
Author(s): Xiangxiang Zhang, Yueyan Yin, Yunhe Su, Zhaoxing Jia, Liangliang Jiang, Yuwen Lu, Hongying Zheng, Jiejun Peng, Shaofei Rao, Guanwei Wu, Jianping Chen, Fei Yan
Software Mentions: 1
Published: about 5 years ago
10.1126/sciadv.aay4740
Elucidating ecological complexity: Unsupervised learning determines global marine eco-provincesCited by: 43
Author(s): Maike Sonnewald, Stephanie Dutkiewicz, Christopher N. Hill, Gaël Forget
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-021-94922-x
Heavy-ion production of 77Br and 76BrCited by: 2
Author(s): Sean McGuinness, John Wilkinson, Graham F. Peaslee
Software Mentions: 1
Published: over 5 years ago
10.1100/2012/303852
Cancer Surgery in the ElderlyCited by: 29
Author(s): Gopal C. Kowdley, Nishant Merchant, James P. Richardson, J Somerville, Myriam Gorospe, Steven C. Cunningham
Software Mentions: 1
Published: almost 15 years ago
10.1155/2015/692084
Hybrid Scheduling Model for Independent Grid TasksCited by: 1
Author(s): J. Shanthini, T. Kalaikumaran, S. Karthik
Software Mentions: 1
Published: almost 12 years ago
10.1002/sim.7694
Derivative estimation for longitudinal data analysis: Examining features of blood pressure measured repeatedly during pregnancyCited by: 9
Author(s): Andrew Simpkin, Maŕıa Durbán, Debbie A. Lawlor, Corrie Macdonald‐Wallis, Margaret T May, Chris Metcalfe, Kate Tilling
Software Mentions: 1
Published: over 8 years ago
10.1177/0962280216666111
Measurement error, time lag, unmeasured confounding: Considerations for longitudinal estimation of the effect of a mediator in randomised clinical trialsCited by: 20
Author(s): Kimberley Goldsmith, Trudie Chalder, Peter White, Michael Sharpe, Andrew Pickles
Software Mentions: 1
Published: about 10 years ago
10.1016/j.tics.2019.10.003
How Curiosity Enhances Hippocampus-Dependent Memory: The Prediction, Appraisal, Curiosity, and Exploration (PACE) FrameworkCited by: 104
Author(s): Matthias J. Gruber, Charan Ranganath
Software Mentions: 1
Published: almost 7 years ago
10.1128/mBio.01581-17
Time-Resolved Transposon Insertion Sequencing Reveals Genome-Wide Fitness Dynamics during InfectionCited by: 39
Author(s): Guanhua Yang, Gabriel Billings, Troy P. Hubbard, Joseph S. Park, Ka Yin Leung, Qin Liu, Brigid M. Davis, Yuanxing Zhang, Qiyao Wang, Matthew K. Waldor
Software Mentions: 1
Published: about 9 years ago
10.1007/s11606-020-05914-y
Strange Bedfellows: Coordinating Medicare and Medicaid to Achieve Cost-Effective Care for Patients with the Greatest Health NeedsCited by: 4
Author(s): Arielle Elmaleh-Sachs, Eric C. Schneider
Software Mentions: 1
Published: over 6 years ago
10.1029/2019JC015604
How Can Phytoplankton Pigments Be Best Used to Characterize Surface Ocean Phytoplankton Groups for Ocean Color Remote Sensing Algorithms?Cited by: 44
Author(s): Sasha J. Kramer, David A. Siegel
Software Mentions: 1
Published: about 7 years ago
10.1155/2018/1652567
Protein Engineering Strategies to Expand CRISPR-Cas9 ApplicationsCited by: 19
Author(s): Lucas F. Ribeiro, Laryssa Freitas Ribeiro, Matheus Quintana Barreto, Richard J. Ward
Software Mentions: 1
Published: over 8 years ago
10.1186/s13045-021-01055-9
Third-line therapy for chronic myeloid leukemia: current status and future directionsCited by: 58
Author(s): Jorge Cortes, Fabian Lang
Software Mentions: 1
Published: over 5 years ago
10.3390/ijerph10115299
Risk Selection, Risk Adjustment and Choice: Concepts and Lessons from the AmericasCited by: 16
Author(s): Randall P. Ellis, Juan Gabriel Fernández
Software Mentions: 1
Published: about 13 years ago
10.3390/ijerph14070715
Sustainable Use of Pesticide Applications in Citrus: A Support Tool for Volume Rate AdjustmentCited by: 24
Author(s): Cruz Garcerá, Alberto Fonte, Enrique Moltó, Patricia Chueca
Software Mentions: 1
Published: over 9 years ago
10.3390/ijerph17186849
Physical Activity, Sport and Physical Education in Northern Ireland School Children: A Cross-Sectional StudyCited by: 12
Author(s): Sinead Connolly, Angela Carlin, Anne Johnston, Catherine Woods, Cormac Powell, Sarahjane Belton, Wesley O’Brien, Jean Saunders, Christina Duff, Orlagh Farmer, Marie Murphy
Software Mentions: 1
Published: about 6 years ago
10.3390/ijerph18020829
Pilot Study to Develop and Test Palliative Care Quality Indicators for Nursing HomesCited by: 4
Author(s): Charlèss Dupont, Robrecht De Schreye, Joachim Cohen, Mark De Ridder, Lieve Van den Block, Luc Deliëns, Kathleen Leemans
Software Mentions: 1
Published: almost 6 years ago
10.3390/ijms20092294
Plasticity and Constraints of tRNA Aminoacylation Define Directed Evolution of Aminoacyl-tRNA SynthetasesCited by: 11
Author(s): Ana Crnković, Oscar Vargas-Rodriguez, Dieter Söll
Software Mentions: 1
Published: over 7 years ago
10.3390/ijms20225583
Computational Nanoscopy of Tight Junctions at the Blood–Brain Barrier InterfaceCited by: 15
Author(s): Nandhini Rajagopal, Flaviyan Jerome Irudayanathan, Shikha Nangia
Software Mentions: 1
Published: about 7 years ago
10.3390/ijms21228431
Sequence-Dependent Nanofiber Structures of Phenylalanine and Isoleucine TripeptidesCited by: 3
Author(s): Qinsi Xiong, Ziye Liu, Wei Han
Software Mentions: 1
Published: about 6 years ago
10.1186/ar3260
Validation of rheumatoid arthritis diagnoses in health care utilization dataCited by: 175
Author(s): Seo Young Kim, Amber Servi, Jennifer M. Polinski, Helen Mogun, Michael E. Weinblatt, Jeffrey N. Katz, Daniel H. Solomon
Software Mentions: 1
Published: almost 16 years ago
10.1177/1750458920978858
Awareness of Human Factors in the operating theatres during the COVID-19 pandemicCited by: 2
Author(s): Carolina Britton, Gareth Hayman, Nicola Stroud
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12871-016-0177-2
The value of uncertainty in critical illness? An ethnographic study of patterns and conflicts in care and decision-making trajectoriesCited by: 29
Author(s): Irene J Higginson, Caroline Rumble, Cathy Shipman, Jonathan Koffman, Katherine E Sleeman, Myfanwy Morgan, Philip Hopkins, J. Noble, William Bernal, Sara Leonard, Odette Dampier, Wendy Prentice, Rachel Burman, Massimo Costantini
Software Mentions: 1
Published: almost 11 years ago
10.1186/1471-2105-9-S9-S2
Validation of an NSP-based (negative selection pattern) gene family identification strategyCited by: 3
Author(s): Ronald Frank, Cyriac Kandoth, Fikret Erçal
Software Mentions: 1
Published: over 18 years ago
10.1186/1471-2105-9-60
Inferring gene expression dynamics via functional regression analysisCited by: 44
Author(s): Hans‐Georg Müller, Jeng‐Min Chiou, Xiaoyan Leng
Software Mentions: 1
Published: almost 19 years ago
10.1186/s12875-015-0324-8
Evaluation of reliability and validity of the General Practice Physical Activity Questionnaire (GPPAQ) in 60–74 year old primary care patientsCited by: 58
Author(s): Shaleen Ahmad, Tess Harris, Elizabeth Limb, Sally Kerry, Christina Victor, Ulf Ekelund, Steve Iliffe, Peter H. Whincup, Carole Beighton, Michael Ussher, Derek G Cook
Software Mentions: 1
Published: about 11 years ago
10.1186/1471-2318-9-34
Quality of care assessment in geriatric evaluation and management units: construction of a chart review tool for a tracer conditionCited by: 10
Author(s): Marie‐Jeanne Kergoat, Bernard-Simon Leclerc, Nicole Leduc, Jean-Gilles Latour, Katherine Berg, Aline Bolduc
Software Mentions: 1
Published: over 17 years ago
10.1186/s12913-019-4587-y
A framework for cross-cultural development and implementation of complex interventions to improve palliative care in nursing homes: the PACE steps to success programmeCited by: 6
Author(s): Jo Hockley, Katherine Froggatt, Lieve Van den Block, Bregje D. Onwuteaka-Philipsen, Marika Kylänen, Katarzyna Szczerbińska, Giovanni Gambassi, Sophie Pautex, Sheila Payne
Software Mentions: 1
Published: about 7 years ago
10.1186/1741-7015-11-213
Development and evaluation of the feasibility and effects on staff, patients, and families of a new tool, the Psychosocial Assessment and Communication Evaluation (PACE), to improve communication and palliative care in intensive care and during clinical uncertaintyCited by: 38
Author(s): Irene J Higginson, Jonathan Koffman, Philip Hopkins, Wendy Prentice, Rachel Burman, Sara Leonard, Caroline Rumble, Jo Noble, Odette Dampier, William Bernal, Sue Hall, Myfanwy Morgan, Cathy Shipman
Software Mentions: 1
Published: about 13 years ago
10.1186/s12916-020-01720-9
Decreased costs and retained QoL due to the ‘PACE Steps to Success’ intervention in LTCFs: cost-effectiveness analysis of a randomized controlled trialCited by: 2
Author(s): Anne Wichmann, Eddy Adang, Kris Vissers, Katarzyna Szczerbińska, Marika Kylänen, Sheila Payne, Giovanni Gambassi, Bregje D. Onwuteaka-Philipsen, Tinne Smets, Lieve Van den Block, Luc Deliëns, Myrra Vernooij‐Dassen, Yvonne Engels
Software Mentions: 1
Published: about 6 years ago
10.1186/1472-6920-14-118
Study protocol for improving asthma outcomes through cross-cultural communication training for physicians: a randomized trial of physician trainingCited by: 4
Author(s): Minal R. Patel, Lara J. Thomas, Kausar Hafeez, Matthew Shankin, Margaret Wilkin, Randall W. Brown
Software Mentions: 1
Published: over 12 years ago
10.1186/s12891-017-1432-5
Efficacy of paracetamol, diclofenac and advice for acute low back pain in general practice: design of a randomized controlled trial (PACE Plus)Cited by: 10
Author(s): Marco Schreijenberg, Pim A J Luijsterburg, Y. D. M. Van Trier, Dimitris Rizopoulos, Marc Koopmanschap, Leen Voogt, Christopher G. Maher, Bart W. Koes
Software Mentions: 1
Published: almost 10 years ago
10.1186/s12891-018-2063-1
Discontinuation of the PACE Plus trial: problems in patient recruitment in general practiceCited by: 11
Author(s): Marco Schreijenberg, Pim A J Luijsterburg, Y. D. M. Van Trier, Dimitris Rizopoulos, Marc Koopmanschap, Leen Voogt, Christopher G. Maher, Bart W. Koes
Software Mentions: 1
Published: over 8 years ago
10.1186/1471-2474-12-123
Systematic review and meta-analysis comparing land and aquatic exercise for people with hip or knee arthritis on function, mobility and other health outcomesCited by: 119
Author(s): Stephanie I Batterham, Sophie Heywood, Jennifer Lyn Keating
Software Mentions: 1
Published: over 15 years ago
10.1186/1471-2377-7-6
Protocol for the PACE trial: A randomised controlled trial of adaptive pacing, cognitive behaviour therapy, and graded exercise as supplements to standardised specialist medical care versus standardised specialist medical care alone for patients with the chronic fatigue syndrome/myalgic encephalomyelitis or encephalopathyCited by: 115
Author(s): Peter D White, Michael Sharpe, Trudie Chalder, Julia DeCesare, Rebecca Walwyn
Software Mentions: 1
Published: over 19 years ago
10.1186/s12904-021-00788-1
NUrsing Homes End of Life care Program (NUHELP): developing a complex interventionCited by: 7
Author(s): Emilio Mota‐Romero, Ana Alejandra Esteban‐Burgos, Daniel Puente‐Fernández, María Paz García‐Caro, César Hueso‐Montoro, Raquel Herrero-Hahn, Rafael Montoya‐Juárez
Software Mentions: 1
Published: over 5 years ago
10.1186/s12904-021-00734-1
No difference in effects of ‘PACE steps to success’ palliative care program for nursing home residents with and without dementia: a pre-planned subgroup analysis of the seven-country PACE trialCited by: 3
Author(s): Rose Miranda, Tinne Smets, Nele Van Den Noortgate, Jenny T. van der Steen, Luc Deliëns, Sheila Payne, Katarzyna Szczerbińska, Sophie Pautex, Liesbeth Van Humbeeck, Giovanni Gambassi, Marika Kylänen, Lieve Van den Block
Software Mentions: 1
Published: over 5 years ago