10.1371/journal.pgen.1008790

Exclusive breastfeeding can attenuate body-mass-index increase among genetically susceptible children: A longitudinal study from the ALSPAC cohort
Cited by: 11
Author(s): Yan Yan Wu, Stephen J. Lye, Cindy‐Lee Dennis, Laurent Briollais
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pcbi.1008819

Boosting GWAS using biological networks: A study on susceptibility to familial breast cancer
Cited by: 3
Author(s): Héctor Climente-González, Christine Lonjou, Fabienne Lesueur, Dominique Stoppa‐Lyonnet, Nadine Andrieu, Chloé-Agathe Azencott
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0257343

Analysis of potential genetic biomarkers and molecular mechanism of smoking-related postmenopausal osteoporosis using weighted gene co-expression network analysis and machine learning
Cited by: 7
Author(s): Shaoshuo Li, Baixing Chen, Hao Chen, Zhen Hua, Yang Shao, Heng Yin, Jianwei Wang
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0222937

Forecasting the impact of population ageing on tuberculosis incidence
Cited by: 16
Author(s): Chu-Chang Ku, Peter J Dodd
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0229052

Combined impact of pesticides and other environmental stressors on animal diversity in irrigation ponds
Cited by: 16
Author(s): Hiroshi C. Ito, Hiroaki Shiraishi, Megumi Nakagawa, Noriko Takamura
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pmed.1003229

Maternal dysglycaemia, changes in the infant’s epigenome modified with a diet and physical activity intervention in pregnancy: Secondary analysis of a randomised control trial
Cited by: 52
Author(s): Elie Antoun, Negusse Tadesse Kitaba, Philip Titcombe, Kathryn V. Dalrymple, Emma Garratt, Sheila J. Barton, Robert Murray, Paul Seed, Joanna D. Holbrook, Michael S. Kobor, David T.S. Lin, Julia L. MacIsaac, Graham C. Burdge, Sara L. White, Lucilla Poston, Keith M. Godfrey, Karen A. Lillycrop
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pcbi.1009316

A probabilistic model for the ultradian timing of REM sleep in mice
Cited by: 6
Author(s): Sung-Ho Park, Justin Baik, June Seok Hong, Hanna Antila, Benjamin Kurland, Shinjae Chung, Franz Weber
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0243265

Genomic variation and epidemiology of SARS-CoV-2 importation and early circulation in Israel
Cited by: 4
Author(s): Neta S. Zuckerman, Efrat Bucris, Yaron Drori, Oran Erster, Danit Sofer, Rakefet Pando, Ella Mendelson, Orna Mor, Michal Mandelboim
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.ppat.1008346

Host-derived circular RNAs display proviral activities in Hepatitis C virus-infected cells
Cited by: 28
Author(s): Tzu‐Chun Chen, Marc Talló-Parra, Qian M. Cao, Sebastián Kadener, René Böttcher, Gemma Pérez‐Vilaró, Pakpoom Boonchuen, Kunlaya Somboonwiwat, Juana Díez, Peter Sarnow
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pcbi.1008457

Searching through functional space reveals distributed visual, auditory, and semantic coding in the human brain
Cited by: 4
Author(s): Sreejan Kumar, Cameron T. Ellis, Thomas O’Connell, Marvin M. Chun, Nicholas B. Turk‐Browne
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0236827

Extraction of radiographic findings from unstructured thoracoabdominal computed tomography reports using convolutional neural network based natural language processing
Cited by: 12
Author(s): Mohit Pandey, Zhuoran Xu, Evan Sholle, Gabriel Maliakal, Gurpreet Singh, Zahra Fatima, Daria Larine, Benjamin C. Lee, Jing Wang, Alexander R. van Rosendael, Leslee J. Shaw, James K. Min, Subhi J. Al’Aref
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0244377

A methodology and theoretical taxonomy for centrality measures: What are the best centrality indicators for student networks?
Cited by: 7
Author(s): Kristel Vignery, Wim Laurier
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0250831

Environmentally triggered shifts in steelhead migration behavior and consequences for survival in the mid-Columbia River
Cited by: 5
Author(s): Jared E. Siegel, Lisa G. Crozier, Lauren E. Wiesebron, Daniel L. Widener
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0236874

What’s all that racket! Soundscapes, phenology, and biodiversity in estuaries
Cited by: 10
Author(s): Agnieszka Monczak, Bradshaw McKinney, Claire Mueller, Eric W. Montie
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0236889

Molecular characterization of Campylobacter spp. recovered from beef, chicken, lamb and pork products at retail in Australia
Cited by: 13
Author(s): Rhiannon L. Wallace, Dieter Bulach, Amy V. Jennison, Mary Valcanis, Angus McLure, James J. Smith, Trudy Graham, Themy Saputra, Simon M. Firestone, Sally Symes, Natasha Waters, Anastasia Stylianopoulos, Martyn Kirk, Kathryn Glass
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0256554

Is it easier to use one language variety at a time, or mix them? An investigation of voluntary language switching with bidialectals
Cited by: 1
Author(s): Mathieu Declerck, Neil W. Kirk
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pcbi.1007520

A novel network control model for identifying personalized driver genes in cancer
Cited by: 39
Author(s): Weifeng Guo, Shao-Wu Zhang, Tao Zeng, Yan Li, Jianxi Gao, Luonan Chen
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pcbi.1007636

Structural diversity of B-cell receptor repertoires along the B-cell differentiation axis in humans and mice
Cited by: 23
Author(s): Aleksandr Kovaltsuk, Matthew I. J. Raybould, Wing Ki Wong, Claire Marks, Sebastian Kelm, James Snowden, Johannes Trück, Charlotte M. Deane
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pcbi.1007564

Regulatory context drives conservation of glycine riboswitch aptamers
Cited by: 6
Author(s): Matt Crum, Nikhil Ram-Mohan, Michelle M. Meyer
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0239237

Preparing GIS data for analysis of stream monitoring data: The R package openSTARS
Cited by: 4
Author(s): Mira Kattwinkel, Eduard Szöcs, Erin E. Peterson, Ralf B. Schäfer
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0255648

The reciprocal relationships between social media self-control failure, mindfulness and wellbeing: A longitudinal study
Cited by: 13
Author(s): Jie Du, P.C.M. van de Kerkhof, Guido M. van Koningsbruggen
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0253284

Landscape structure shapes the diversity of tree seedlings at multiple spatial scales in a fragmented tropical rainforest
Cited by: 4
Author(s): Sergio Nicasio‐Arzeta, Isela Zermeño‐Hernández, Susana Maza‐Villalobos, Julieta Benítez‐Malvido
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0241913

Can multitrophic interactions shape morphometry, allometry, and fluctuating asymmetry of seed-feeding insects?
Cited by: 2
Author(s): Tamires Camila Talamonte de Oliveira, Ana Cristina Andrade Monteiro, Lucas Del Bianco Faria
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0234505

Comparative genomics of high grade neuroendocrine carcinoma of the cervix
Cited by: 21
Author(s): R. Tyler Hillman, Robert J. Cardnell, Junya Fujimoto, Won Chul Lee, Jianjun Zhang, Lauren A. Byers, Preetha Ramalingam, Mario M. Leitao, Elizabeth M. Swisher, P. Andrew Futreal, Michael Frumovitz
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0257712

The effects of mycorrhizal colonization on phytophagous insects and their natural enemies in soybean fields
Cited by: 0
Author(s): Élisée Emmanuel Dabré, Soon‐Jae Lee, Mohamed Hijri, Colin Favret
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0234908

Machine learning and natural language processing methods to identify ischemic stroke, acuity and location from radiology reports
Cited by: 59
Author(s): Charlene Ong, Agni Orfanoudaki, Rebecca Zhang, Francois Pierre M. Caprasse, Meghan R. Hutch, Liang Ma, Darian Fard, Oluwafemi Balogun, Matthew Miller, Margaret A. Minnig, Hanife Saglam, Brenton Prescott, David M. Greer, Stelios M. Smirnakis, Dimitris Bertsimas
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pcbi.1008889

Building blocks and blueprints for bacterial autolysins
Cited by: 9
Author(s): Spencer J. Mitchell, Deeptak Verma, Karl E. Griswold, Chris Bailey‐Kellogg
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0241993

Association of small, dense LDL-cholesterol concentration and lipoprotein particle characteristics with coronary heart disease: A systematic review and meta-analysis
Cited by: 52
Author(s): Lathan Liou, Stephen Kaptoge
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0230221

Driving factors of conifer regeneration dynamics in eastern Canadian boreal old-growth forests
Cited by: 22
Author(s): Maxence Martin, Miguel Montoro Girona, Hubert Morin
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0224560

Transcriptional analysis of amino acid, metal ion, vitamin and carbohydrate uptake in butanol-producing Clostridium beijerinckii NRRL B-598
Cited by: 13
Author(s): Maryna Vasylkivska, Katerina Jureckova, Barbora Branská, Karel Sedlář, Jan Kolek, Ivo Provazník, Petra Patáková
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0249831

Association between early viral LRTI and subsequent wheezing development, a meta-analysis and sensitivity analyses for studies comparable for confounding factors
Cited by: 4
Author(s): Sébastien Kenmoe, Arnol Bowo‐Ngandji, Cyprien Kengne‐Nde, Jean Thierry Ebogo‐Belobo, Donatien Serge Mbaga, Gadji Mahamat, Cynthia Paola Demeni Emoh, Richard Njouom
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0239552

Combining organic and mineral fertilizers as a climate-smart integrated soil fertility management practice in sub-Saharan Africa: A meta-analysis
Cited by: 39
Author(s): Gil Gram, Dries Roobroeck, Pypers Pieter, Johan Six, Roel Merckx, Bernard Vanlauwe
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0218582

Agricultural impacts on streams near Nitrate Vulnerable Zones: A case study in the Ebro basin, Northern Spain
Cited by: 8
Author(s): Rubén Ladrera, Óscar Belmar, Rafael Tomás, Narcı́s Prat, Miguel Cañedo‐Argüelles
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pcbi.1008517

Network propagation of rare variants in Alzheimer’s disease reveals tissue-specific hub genes and communities
Cited by: 1
Author(s): Marzia Antonella Scelsi, Valerio Napolioni, Michael D. Greicius, André Altmann
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0228098

How to use frailtypack for validating failure-time surrogate endpoints using individual patient data from meta-analyses of randomized controlled trials
Cited by: 2
Author(s): Casimir Ledoux Sofeu, Virginie Rondeau
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0256568

The absence of fans removes the home advantage associated with penalties called by National Hockey League referees
Cited by: 6
Author(s): Joël Guérette, Caroline Blais, Daniel Fiset
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0253656

Relative age effect? No “flipping” way! Apparatus dependent inverse relative age effects in elite, women’s artistic gymnastics
Cited by: 4
Author(s): Eleanor Langham-Walsh, Vicky Gottwald, James Hardy
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0240957

Relationships between climate and phylogenetic community structure of fossil pollen assemblages are not constant during the last deglaciation
Cited by: 0
Author(s): Kavya Pradhan, Diego Nieto‐Lugilde, Matthew C. Fitzpatrick
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pmed.1003151

Impact of physicians’ participation in non-interventional post-marketing studies on their prescription habits: A retrospective 2-armed cohort study in Germany
Cited by: 4
Author(s): Cora Koch, Jörn Schleeff, Franka Techen, Daniel Wollschläger, Gisela Schott, Ralf Kölbel, Klaus Lieb
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0229695

Psychometric characteristics and factorial structures of the Defensive Pessimism Questionnaire—Spanish Version (DPQ-SV)
Cited by: 1
Author(s): Carmen Ramírez‐Maestre, Rosa Esteve, Elena R. Serrano‐Ibáñez, Alicia E. López‐Martínez, Gema T. Ruiz‐Párraga, Teresa Rivas Moya
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pcbi.1008195

VALERIE: Visual-based inspection of alternative splicing events at single-cell resolution
Cited by: 9
Author(s): Wei Wen, Adam J. Mead, Supat Thongjuea
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0252408

The temperature of emotions
Cited by: 16
Author(s): Francisco Barbosa Escobar, Carlos Velasco, Kosuke Motoki, Derek V. Byrne, Qian Janice Wang
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0234489

Application of network analysis and cluster analysis for better prevention and control of swine diseases in Argentina
Cited by: 11
Author(s): Jerome N. Baron, María Natalia Aznar, M. Monterubbianesi, Beatriz Martínez‐López
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0249633

Climatic change and extinction risk of two globally threatened Ethiopian endemic bird species
Cited by: 13
Author(s): Andrew J. Bladon, Paul F. Donald, Nigel Collar, Jarso Denge, Galgalo Dadacha, Mengistu Wondafrash, Rhys E. Green
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0234552

Multiple measures derived from 3D photonic body scans improve predictions of fat and muscle mass in young Swiss men
Cited by: 8
Author(s): Roman Sager, Sabine Güsewell, Frank J Rühli, Nicole Bender, Kaspar Staub
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0244363

Backbone: An R package for extracting the backbone of bipartite projections
Cited by: 20
Author(s): Rachel Domagalski, Zachary P. Neal, Bruce E. Sagan
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pcbi.1008182

MONET: Multi-omic module discovery by omic selection
Cited by: 9
Author(s): Nimrod Rappoport, Roy Safra, Ron Shamir
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0250385

What proportion of people have a follow-up biopsy in randomized trials of treatments for non-alcoholic steatohepatitis?: A systematic review and meta-analysis
Cited by: 1
Author(s): Dimitrios A. Koutoukidis, Elizabeth Morris, John A. Henry, Yusra Shammoon, Matthew C. Zimmerman, Moscho Michalopoulou, Susan A. Jebb, Paul Aveyard
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0252685

Expanded transcriptomic view of strawberry fruit ripening through meta-analysis
Cited by: 0
Author(s): Gibum Yi, Hosub Shin, Kyeonglim Min, Eun Jin Lee
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pcbi.1009108

Mass spectrometry and machine learning for the accurate diagnosis of benzylpenicillin and multidrug resistance of Staphylococcus aureus in bovine mastitis
Cited by: 5
Author(s): Necati Esener, Alexandre Maciel-Guerra, Katharina Giebel, Daniel Lea, Martin J. Green, Andrew J. Bradley, Tania Dottorini
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0255436

Global distribution of sporadic sapovirus infections: A systematic review and meta-analysis
Cited by: 8
Author(s): Marta Diez‐Valcarce, Anita Kambhampati, Laura Calderwood, Aron J. Hall, Sara Mirza, Jan Vinjé
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pcbi.1008537

Factors influencing estimates of HIV-1 infection timing using BEAST
Cited by: 3
Author(s): Bethany L. Dearlove, Sodsai Tovanabutra, Christopher L. Owen, Éric Lewitus, Yifan Li, Eric Sanders‐Buell, Meera Bose, Anne Marie O’Sullivan, Gustavo H. Kijak, Shana Miller, Kultida Poltavee, Jenica Lee, Lydia Bonar, Elizabeth A. Harbolick, Bahar Ahani, Phuc Pham, Hannah Kibuuka, Lucas Maganga, Sorachai Nitayaphan, Fred Sawe, Jerome H. Kim, Leigh Anne Eller, Sandhya Vasan, Robert A. Gramzinski, Nelson L. Michael, Merlin L. Robb, Morgane Rolland
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0247037

A new perspective and assessment measure for common dissociative experiences: ‘Felt Sense of Anomaly’
Cited by: 10
Author(s): Emma Černis, Esther T. Beierl, Andrew Molodynski, Anke Ehlers, Daniel Freeman
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0252025

Prediction of preterm birth in nulliparous women using logistic regression and machine learning
Cited by: 14
Author(s): Reza Arabi Belaghi, Joseph Beyene, Sarah D. McDonald
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0226435

The acute myeloid leukemia associated AML1-ETO fusion protein alters the transcriptome and cellular progression in a single-oncogene expressing in vitro induced pluripotent stem cell based granulocyte differentiation model
Cited by: 15
Author(s): Esther Tijchon, Guoqiang Yi, Amit Mandoli, Jos G. A. Smits, Francesco Ferrari, Branco M. H. Heuts, Falco Wijnen, Bowon Kim, Eva M. Janssen-Megens, Jan Jacob Schuringa, Joost H.A. Martens
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0249065

Oxazepam and cognitive reappraisal: A randomised experiment
Cited by: 0
Author(s): Gustav Nilsonne, Sandra Tamm, Armita Golkar, Andreas Olsson, Karolina Sörman, Katarina Howner, Marianne Kristiansson, Martin Ingvar, Predrag Petrović
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0237412

The impact of different negative training data on regulatory sequence predictions
Cited by: 3
Author(s): Louisa-Marie Krützfeldt, Max Schubach, Martin Kircher
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.ppat.1009701

Control of SARS-CoV-2 infection after Spike DNA or Spike DNA+Protein co-immunization in rhesus macaques
Cited by: 11
Author(s): Margherita Rosati, Mahesh Agarwal, Xintao Hu, Santhi Devasundaram, Dimitris Stellas, Bhabadeb Chowdhury, Jenifer Bear, Robert T. Burns, Duncan Donohue, Laurent Pessaint, Hanné Andersen, Mark G. Lewis, Evangelos Terpos, Meletios A. Dimopoulos, Alexander Wlodawer, James I. Mullins, David Venzon, George N. Pavlakis, Barbara K. Felber
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0238304

Investigation of gene-gene interactions in cardiac traits and serum fatty acid levels in the LURIC Health Study
Cited by: 5
Author(s): Jiayan Zhou, Kristin Passero, Nicole Palmiero, Bertram Müller‐Myhsok, Marcus E. Kleber, Winfried Maerz, Molly A. Hall
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0254876

Mapping the probability of forest snow disturbances in Finland
Cited by: 5
Author(s): Susanne Suvanto, Aleksi Lehtonen, Seppo Nevalainen, Ilari Lehtonen, Heli Viiri, Mikael Strandström, Mikko Peltoniemi
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pgen.1009018

The causal effect of obesity on prediabetes and insulin resistance reveals the important role of adipose tissue in insulin resistance
Cited by: 24
Author(s): Min‐Hua Zong, Marcus Alvarez, Arthur Ko, Yash V. Bhagat, Elior Rahmani, Brandon Jew, Sini Heinonen, Liliana Muñóz-Hernández, Miguel Francisco Herrera-Hernández, Carlos A. Aguilar-Salinas, Teresa Tusié-Luna, Karen L. Mohlke, Markku Laakso, Kirsi H. Pietiläinen, Eran Halperin, Päivi Pajukanta
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0230594

A Zipf-plot based normalization method for high-throughput RNA-seq data
Cited by: 6
Author(s): Bin Wang
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0226616

Insights into fungal diversity of a shallow-water hydrothermal vent field at Kueishan Island, Taiwan by culture-based and metabarcoding analyses
Cited by: 25
Author(s): Ka−Lai Pang, Sheng−Yu Guo, I-An Chen, Gaëtan Burgaud, Zengwei Luo, Hans-Uwe Dahms, Jiang‐Shiou Hwang, Yi-Li Lin, Jian-Shun Huang, Tsz-Wai Ho, Ling Ming Tsang, Michael Chiang, Hyojung Cha
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pcbi.1007904

Restriction of S-adenosylmethionine conformational freedom by knotted protein binding sites
Cited by: 7
Author(s): Agata P. Perlinska, Adam Stasiulewicz, Ewa K. Nawrocka, Krzysztof Kazimierczuk, Piotr Setny, Joanna I. Sułkowska
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0238689

Assessment of transcriptomic constraint-based methods for central carbon flux inference
Cited by: 3
Author(s): Siddharth Bhadra-Lobo, Min Kyung Kim, Desmond S. Lun
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0254514

Reaching to inhibit a prepotent response: A wearable 3-axis accelerometer kinematic analysis
Cited by: 2
Author(s): Alessia Angeli, Irene Valori, Teresa Farroni, Gustavo Marfia
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0245824

MultipleTesting.com: A tool for life science researchers for multiple hypothesis testing correction
Cited by: 51
Author(s): Otília Menyhárt, Boglárka Weltz, Balázs Győrffy
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0236796

Comparative study of neighboring Holm oak and olive trees-belowground microbial communities subjected to different soil management
Cited by: 9
Author(s): Antonio J. Fernández‐González, Nuria M. Wentzien, Pablo J. Villadas, Antonio Valverde-Corredor, Ana V. Lasa, Carmen Gómez-Lama Cabanás, Jesús Mercado‐Blanco, Manuel Fernández‐López
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0232963

Identifying the key regulators that promote cell-cycle activity in the hearts of early neonatal pigs after myocardial injury
Cited by: 11
Author(s): Eric Zhang, Thanh Nguyen, Meng Zhao, Son Do Hai Dang, Jake Y. Chen, Weihua Bian, Gregory P. Walcott
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pcbi.1009138

Behavioral correlates of cortical semantic representations modeled by word vectors
Cited by: 6
Author(s): Shogo Nishida, Antione Blanc, Naoya Maeda, Masataka Kado, Shinji Nishimoto
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0255838

Optimal distribution-preserving downsampling of large biomedical data sets (opdisDownsampling)
Cited by: 9
Author(s): Jörn Lötsch, Sebastian Malkusch, Alfred Ultsch
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0240614

Interspecific interactions among functionally diverse frugivores and their outcomes for plant reproduction: A new approach based on camera-trap data and tailored null models
Cited by: 16
Author(s): M. Arthur Selwyn, Pedro J. Garrote, Antonio R. Castilla, José M. Fedriani
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pgen.1009697

A fast and robust Bayesian nonparametric method for prediction of complex traits using summary statistics
Cited by: 27
Author(s): Geyu Zhou, Hongyu Zhao
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0233731

Eyebrow position in grammatical and emotional expressions in Kazakh-Russian Sign Language: A quantitative study
Cited by: 8
Author(s): Vadim Kimmelman, Alfarabi Imashev, Medet Mukushev, Anara Sandygulova
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0236631

Citizen science for predicting spatio-temporal patterns in seabird abundance during migration
Cited by: 5
Author(s): Beatriz Martín, Alejandro Onrubia, Julio González-Arias, Juan Antonio Vicente-Virseda
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pcbi.1008806

VolPy: Automated and scalable analysis pipelines for voltage imaging datasets
Cited by: 17
Author(s): Changjia Cai, Johannes Friedrich, Amrita Singh, M. Hossein Eybposh, Eftychios A. Pnevmatikakis, Kaspar Podgorski, Andrea Giovannucci
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0241231

A taxonomic and molecular survey of the pteridophytes of the Nectandra Cloud Forest Reserve, Costa Rica
Cited by: 7
Author(s): Joel H. Nitta, Atsushi Ebihara, Alan Р. Smith
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0239480

Horizontal and vertical movements of starry smooth-hound Mustelus asterias in the northeast Atlantic
Cited by: 4
Author(s): Christopher A. Griffiths, Serena Wright, Joana F. Silva, Jim R. Ellis, David Righton, Sophy R. McCully Phillips
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0236717

Genetic diversity, relatedness and inbreeding of ranched and fragmented Cape buffalo populations in southern Africa
Cited by: 6
Author(s): Deon de Jager, Cindy Kim Harper, Paulette Bloomer
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0243857

Network preservation reveals shared and unique biological processes associated with chronic alcohol abuse in NAc and PFC
Cited by: 7
Author(s): Eric Vornholt, John W. Drake, Mohammed Mamdani, Gowon O. McMichael, Zachary N. Taylor, Silviu‐Alin Bacanu, Michael F. Miles, Vladimir I. Vladimirov
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pgen.1008511

JMJD6 participates in the maintenance of ribosomal DNA integrity in response to DNA damage
Cited by: 11
Author(s): Jérémie Fages, Catherine Chailleux, Jonathan Humbert, Suk-Min Jang, Jérémy Loehr, Jean-Philippe Lambert, Jacques Côté, Didier Trouche, Yvan Canitrot
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pgen.1009784

R-loops and regulatory changes in chronologically ageing fission yeast cells drive non-random patterns of genome rearrangements
Cited by: 1
Author(s): D. S. Ellis, Félix Reyes-Martín, María Rodríguez-López, Cristina Cotobal, Xi‐Ming Sun, Quentin Saintain, Daniel C. Jeffares, Samuel Marguerat, Juan Jiménez, Jürg Bähler
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0255391

Not just trash birds: Quantifying avian diversity at landfills using community science data
Cited by: 9
Author(s): Zachary J. Arnold, Seth J. Wenger, Richard J. Hall
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0257151

Replicating the Disease framing problem during the 2020 COVID-19 pandemic: A study of stress, worry, trust, and choice under risk
Cited by: 11
Author(s): Nikolay R. Rachev, Hyemin Han, David Lacko, Rebekah Gelpí, Yuki Yamada, Andreas Lieberoth
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0256902

Classifying patients with depressive and anxiety disorders according to symptom network structures: A Gaussian graphical mixture model-based clustering
Cited by: 1
Author(s): Jun Kashihara, Yoshitake Takebayashi, Yoshihiko Kunisato, Masaya Ito
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0229881

Impacts of climate change on agro-climatic suitability of major food crops in Ghana
Cited by: 38
Author(s): Abel Chemura, Bernhard Schauberger, Christoph Gornott
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0254881

Online activity of mosques and Muslims in the Netherlands: A study of Facebook, Instagram, YouTube and Twitter
Cited by: 2
Author(s): Frank van Tubergen, Tobias Cinjee, Anastasia Menshikova, Joran Veldkamp
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pcbi.1009182

Sample size calculation for phylogenetic case linkage
Cited by: 7
Author(s): Shirlee Wohl, J. R. Giles, Justin Lessler
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0236037

Dissecting new genetic components of salinity tolerance in two-row spring barley at the vegetative and reproductive stages
Cited by: 19
Author(s): Stephanie Saadé, Chris Brien, Yveline Pailles, Bettina Berger, Mohammad Shahid, Joanne Russell, Robbie Waugh, Sónia Negrão, Mark Tester
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pcbi.1009300

MicrobeTrace: Retooling molecular epidemiology for rapid public health response
Cited by: 17
Author(s): Ellsworth Campbell, Anthony Boyles, Anupama Shankar, Jay Kim, S. P. Knyazev, Roxana Cintrón, William M. Switzer
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0230571

Using medical claims database to develop a population disease progression model for leuprorelin-treated subjects with hormone-sensitive prostate cancer
Cited by: 1
Author(s): Yixuan Zou, Fei Tang, Jeffery Talbert, Chee M. Ng
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.ppat.1009769

Virulence and community dynamics of fungal species with vertical and horizontal transmission on a plant with multiple infections
Cited by: 11
Author(s): Kai Fang, Jie Zhou, Lin Chen, Yuxuan Li, Ai-Ling Yang, Xing-Fan Dong, Hanbo Zhang
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0249899

A pseudomolecule assembly of the Rocky Mountain elk genome
Cited by: 2
Author(s): Rick E. Masonbrink, David P. Alt, Darrell O. Bayles, Paola M. Boggiatto, William H. Edwards, Fred M. Tatum, Jeffrey T. Williams, Jennifer H. Wilson-Welder, Aleksey V. Zimin, Andrew J. Severin, Steven C. Olsen
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0252593

Quantifying impacts of stony coral tissue loss disease on corals in Southeast Florida through surveys and 3D photogrammetry
Cited by: 11
Author(s): Ian R. Combs, Michael S. Studivan, Ryan J. Eckert, Joshua D. Voss
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0251458

Statistical privacy-preserving message broadcast for peer-to-peer networks
Cited by: 1
Author(s): David Mödinger, Jan-Hendrik Lorenz, Franz J. Hauck
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0226253

DNA metabarcoding-based diet survey for the Eurasian otter (Lutra lutra): Development of a Eurasian otter-specific blocking oligonucleotide for 12S rRNA gene sequencing for vertebrates
Cited by: 16
Author(s): Priyanka Kumari, Ke Dong, Kyung-Yeon Eo, Woo-Shin Lee, Junko Kimura, Naomichi Yamamoto
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0233266

Automatic hoof-on and -off detection in horses using hoof-mounted inertial measurement unit sensors
Cited by: 6
Author(s): Marij Tijssen, Elin Hernlund, Marie Rhodin, Stephan Bosch, J. P. Voskamp, M. Nielen, F. M. Serra Braganςa
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0252074

Development and psychometric evaluation of the CO-PARTNER tool for collaboration and parent participation in neonatal care
Cited by: 8
Author(s): Nicole R. van Veenendaal, Jennifer N. Auxier, Sophie R D van der Schoor, Linda S. Franck, Mireille Stelwagen, Femke de Groof, Johannes B. van Goudoever, Iris Eekhout, Henrica C.W. de Vet, Anna Axelin, Anne A. M. W. van Kempen
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0220165

PS-SiZer map to investigate significant features of body-weight profile changes in HIV infected patients in the IeDEA Collaboration
Cited by: 0
Author(s): Jaroslaw Harezlak, Samiha Sarwat, Kara Wools‐Kaloustian, Michael Schomaker, Eric Balestre, Matthew Law, Sasisopin Kiertiburanakul, Matthew P. Fox, Diana Huis in ʼt Veld, Beverly Musick, Constantin T. Yiannoutsos
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0229183

Divorce and adolescent academic achievement: Heterogeneity in the associations by parental education
Cited by: 9
Author(s): Sondre Aasen Nilsen, Kyrre Breivik, Bente Wold, Kristin Gärtner Askeland, Børge Sivertsen, Mari Hysing, Tormod Bøe
Software Mentions: 5
Published: over 6 years ago