Projects: pypi: PACE
https://packages.ecosyste.ms/registries/pypi.org/packages/PACE
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Very Likely Science (90)
Papers Mentioning PACE 13,779
10.1371/journal.pmed.1003229
Maternal dysglycaemia, changes in the infant’s epigenome modified with a diet and physical activity intervention in pregnancy: Secondary analysis of a randomised control trialCited by: 52
Author(s): Elie Antoun, Negusse Tadesse Kitaba, Philip Titcombe, Kathryn V. Dalrymple, Emma Garratt, Sheila J. Barton, Robert Murray, Paul Seed, Joanna D. Holbrook, Michael S. Kobor, David T.S. Lin, Julia L. MacIsaac, Graham C. Burdge, Sara L. White, Lucilla Poston, Keith M. Godfrey, Karen A. Lillycrop
Software Mentions: 5
Published: almost 6 years ago
10.1371/journal.pone.0246809
Resource selection of a nomadic ungulate in a dynamic landscapeCited by: 4
Author(s): Theresa S. M. Stratmann, Nandintsetseg Dejid, Justin M. Calabrese, William F. Fagan, Christen H. Fleming, Kirk A. Olson, Thomas Mueller
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0243205
Neuropeptide S receptor gene Asn107 polymorphism in obese male individuals in PakistanCited by: 3
Author(s): Aftab Ahmad, Fahad Almsned, Pasha Ghazal, Malik Waqar Ahmed, M. Saleet Jafri, Habib Bokhari
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0243609
MANTA, an integrative database and analysis platform that relates microbiome and phenotypic dataCited by: 6
Author(s): Yi An Chen, Jonguk Park, Yayoi Natsume-Kitatani, Hitoshi Kawashima, Attayeb Mohsen, Koji Hosomi, Kumpei Tanisawa, Harumi Ohno, Kana Konishi, Haruka Murakami, Motohiko Miyachi, Jun Kunisawa, Kenji Mizuguchi
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0226575
Neuronal and glial DNA methylation and gene expression changes in early epileptogenesisCited by: 17
Author(s): Toni Berger, Magnus Dehli Vigeland, Hanne Sagsveen Hjorthaug, Lars Etholm, Cecilie G. Nome, Erik Taubøll, Kjell Heuser, Kaja Kristine Selmer
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pone.0245958
Testing the causal mechanism of the peninsular effect in passerine birds from South KoreaCited by: 2
Author(s): Jin–Yong Kim, Man‐Seok Shin, Chang Ho Seo, Soo Hyung Eo, Seungbum Hong
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0229807
Microhabitat and ectomycorrhizal effects on the establishment, growth and survival of Quercus ilex L. seedlings under droughtCited by: 20
Author(s): Laura García de Jalón, Jean‐Marc Limousin, Franck Richard, Arthur Geßler, Martina Peter, Stephan Hättenschwiler, Alexandru Milcu
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pone.0223549
Quantifying normal and parkinsonian gait features from home movies: Practical application of a deep learning–based 2D pose estimatorCited by: 46
Author(s): Kenichiro Sato, Yu Nagashima, Tatsuo Mano, Atsushi Iwata, Tatsushi Toda
Software Mentions: 5
Published: almost 7 years ago
10.1371/journal.pgen.1008770
Multiple mechanisms regulate H3 acetylation of enhancers in response to thyroid hormoneCited by: 19
Author(s): Stine M. Præstholm, Majken Siersbæk, Ronni Nielsen, Xuguang Zhu, Anthony N. Hollenberg, Sheue-yann Cheng, Lars Grøntved
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pone.0236631
Citizen science for predicting spatio-temporal patterns in seabird abundance during migrationCited by: 5
Author(s): Beatriz Martín, Alejandro Onrubia, Julio González-Arias, Juan Antonio Vicente-Virseda
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pone.0239541
Genetic structure of a germplasm for hybrid breeding in rye (Secale cereale L.)Cited by: 14
Author(s): Nikolaj Vendelbo, Pernille Sarup, Jihad Orabi, Peter Skov Kristensen, A. Jahoor
Software Mentions: 5
Published: almost 6 years ago
10.1371/journal.pone.0236037
Dissecting new genetic components of salinity tolerance in two-row spring barley at the vegetative and reproductive stagesCited by: 19
Author(s): Stephanie Saadé, Chris Brien, Yveline Pailles, Bettina Berger, Mohammad Shahid, Joanne Russell, Robbie Waugh, Sónia Negrão, Mark Tester
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pone.0234505
Comparative genomics of high grade neuroendocrine carcinoma of the cervixCited by: 21
Author(s): R. Tyler Hillman, Robert J. Cardnell, Junya Fujimoto, Won Chul Lee, Jianjun Zhang, Lauren A. Byers, Preetha Ramalingam, Mario M. Leitao, Elizabeth M. Swisher, P. Andrew Futreal, Michael Frumovitz
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pcbi.1009108
Mass spectrometry and machine learning for the accurate diagnosis of benzylpenicillin and multidrug resistance of Staphylococcus aureus in bovine mastitisCited by: 5
Author(s): Necati Esener, Alexandre Maciel-Guerra, Katharina Giebel, Daniel Lea, Martin J. Green, Andrew J. Bradley, Tania Dottorini
Software Mentions: 5
Published: about 5 years ago
10.1371/journal.pone.0240614
Interspecific interactions among functionally diverse frugivores and their outcomes for plant reproduction: A new approach based on camera-trap data and tailored null modelsCited by: 16
Author(s): M. Arthur Selwyn, Pedro J. Garrote, Antonio R. Castilla, José M. Fedriani
Software Mentions: 5
Published: almost 6 years ago
10.1371/journal.pone.0238304
Investigation of gene-gene interactions in cardiac traits and serum fatty acid levels in the LURIC Health StudyCited by: 5
Author(s): Jiayan Zhou, Kristin Passero, Nicole Palmiero, Bertram Müller‐Myhsok, Marcus E. Kleber, Winfried Maerz, Molly A. Hall
Software Mentions: 5
Published: almost 6 years ago
10.1371/journal.pone.0243446
Genomic and morphological evidence of distinct populations in the endemic common (weedy) seadragon Phyllopteryx taeniolatus (Syngnathidae) along the east coast of AustraliaCited by: 9
Author(s): O. Selma Klanten, Michelle R. Gaither, Samuel E. Greaves, Kade Mills, Kristine O’Keeffe, John Turnbull, Rob McKinnon, David J. Booth
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pcbi.1008889
Building blocks and blueprints for bacterial autolysinsCited by: 9
Author(s): Spencer J. Mitchell, Deeptak Verma, Karl E. Griswold, Chris Bailey‐Kellogg
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0246544
Swab pooling: A new method for large-scale RT-qPCR screening of SARS-CoV-2 avoiding sample dilutionCited by: 21
Author(s): Ana Paula Christoff, Giuliano Netto Flores Cruz, Aline Fernanda Rodrigues Sereia, Dellyana Rodrigues Boberg, Daniela Carolina de Bastiani, Laís Eiko Yamanaka, Gislaine Fongaro, Patrícia Hermes Stoco, Maria Luiza Bazzo, Edmundo C. Grisard, Camila Hernandes, Luiz Felipe Valter de Oliveira
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pcbi.1009300
MicrobeTrace: Retooling molecular epidemiology for rapid public health responseCited by: 17
Author(s): Ellsworth Campbell, Anthony Boyles, Anupama Shankar, Jay Kim, S. P. Knyazev, Roxana Cintrón, William M. Switzer
Software Mentions: 5
Published: almost 5 years ago
10.1371/journal.pone.0243857
Network preservation reveals shared and unique biological processes associated with chronic alcohol abuse in NAc and PFCCited by: 7
Author(s): Eric Vornholt, John W. Drake, Mohammed Mamdani, Gowon O. McMichael, Zachary N. Taylor, Silviu‐Alin Bacanu, Michael F. Miles, Vladimir I. Vladimirov
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0252408
The temperature of emotionsCited by: 16
Author(s): Francisco Barbosa Escobar, Carlos Velasco, Kosuke Motoki, Derek V. Byrne, Qian Janice Wang
Software Mentions: 5
Published: about 5 years ago
10.1371/journal.pone.0246269
Skewed logit model for analyzing correlated infant morbidity dataCited by: 6
Author(s): Ngugi Mwenda, Ruth Nduati, Mathew Kosgei, Gregory Kerich
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0238689
Assessment of transcriptomic constraint-based methods for central carbon flux inferenceCited by: 3
Author(s): Siddharth Bhadra-Lobo, Min Kyung Kim, Desmond S. Lun
Software Mentions: 5
Published: almost 6 years ago
10.1371/journal.pone.0252074
Development and psychometric evaluation of the CO-PARTNER tool for collaboration and parent participation in neonatal careCited by: 8
Author(s): Nicole R. van Veenendaal, Jennifer N. Auxier, Sophie R D van der Schoor, Linda S. Franck, Mireille Stelwagen, Femke de Groof, Johannes B. van Goudoever, Iris Eekhout, Henrica C.W. de Vet, Anna Axelin, Anne A. M. W. van Kempen
Software Mentions: 5
Published: about 5 years ago
10.1371/journal.pcbi.1008517
Network propagation of rare variants in Alzheimer’s disease reveals tissue-specific hub genes and communitiesCited by: 1
Author(s): Marzia Antonella Scelsi, Valerio Napolioni, Michael D. Greicius, André Altmann
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0236827
Extraction of radiographic findings from unstructured thoracoabdominal computed tomography reports using convolutional neural network based natural language processingCited by: 12
Author(s): Mohit Pandey, Zhuoran Xu, Evan Sholle, Gabriel Maliakal, Gurpreet Singh, Zahra Fatima, Daria Larine, Benjamin C. Lee, Jing Wang, Alexander R. van Rosendael, Leslee J. Shaw, James K. Min, Subhi J. Al’Aref
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pcbi.1008195
VALERIE: Visual-based inspection of alternative splicing events at single-cell resolutionCited by: 9
Author(s): Wei Wen, Adam J. Mead, Supat Thongjuea
Software Mentions: 5
Published: almost 6 years ago
10.1371/journal.pcbi.1008856
Convolutional neural networks improve species distribution modelling by capturing the spatial structure of the environmentCited by: 26
Author(s): Benjamin Deneu, Maximilien Servajean, Pierre Bonnet, Christophe Botella, François Munoz, Alexis Joly
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0242662
Assessing roost disturbance of straw-coloured fruit bats (Eidolon helvum) through tri-axial accelerationCited by: 2
Author(s): Tânia Domingues Costa, Carlos David Santos, Ana Rainho, Michael Abedi-Lartey, Jakob Fahr, Martin Wikelski, Dina K. N. Dechmann
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0222737
Annual replication is essential in evaluating the response of the soil microbiome to the genetic modification of maize in different biogeographical regionsCited by: 6
Author(s): Márton Szoboszlay, Astrid Näther, Ewen Mullins, Christoph C. Tebbe
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pone.0250385
What proportion of people have a follow-up biopsy in randomized trials of treatments for non-alcoholic steatohepatitis?: A systematic review and meta-analysisCited by: 1
Author(s): Dimitrios A. Koutoukidis, Elizabeth Morris, John A. Henry, Yusra Shammoon, Matthew C. Zimmerman, Moscho Michalopoulou, Susan A. Jebb, Paul Aveyard
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pntd.0009165
Heterogeneity in response to serological exposure markers of recent Plasmodium vivax infections in contrasting epidemiological contextsCited by: 14
Author(s): Jason Rosado, Michael White, Rhea J. Longley, Marcus Vinícius Guimarães Lacerda, Wuelton Marcelo Monteiro, Jessica Brewster, Jetsumon Sattabongkot, Mitchel Guzmán-Guzmán, Alejandro Llanos-Cuentas, Joseph M. Vinetz, Dionicia Gamboa, Ivo Müeller
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.ppat.1008717
Genomic and transcriptomic evidence for descent from Plasmodium and loss of blood schizogony in Hepatocystis parasites from naturally infected red colobus monkeysCited by: 17
Author(s): Eerik Aunin, Ulrike Böhme, Theo Sanderson, Noah D. Simons, Tony L. Goldberg, Nelson Ting, Colin A. Chapman, Chris Newbold, Matthew Berriman, Adam J. Reid
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pone.0235117
Using structured pathology data to predict hospital-wide mortality at admissionCited by: 6
Author(s): Mieke Deschepper, Willem Waegeman, Dirk Vogelaers, Kristof Eeckloo
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pntd.0009504
Developmental changes and metabolic reprogramming during establishment of infection and progression of Trypanosoma brucei brucei through its insect hostCited by: 16
Author(s): Arunasalam Naguleswaran, Paula Fernandes, Shubha Bevkal, Ruth Rehmann, Pamela Nicholson, Isabel Roditi
Software Mentions: 5
Published: almost 5 years ago
10.1371/journal.pcbi.1007786
Minimizing the number of optimizations for efficient community dynamic flux balance analysisCited by: 12
Author(s): James D. Brunner, Nicholas Chia
Software Mentions: 5
Published: almost 6 years ago
10.1371/journal.pone.0237601
Impact of calculated plasma volume status on all-cause and cardiovascular mortality: 4-year nationwide community-based prospective cohort studyCited by: 14
Author(s): Yoichiro Otaki, Tetsu Watanabe, Tsuneo Konta, Masafumi Watanabe, Koichi Asahi, Kunihiro Yamagata, Shouichi Fujimoto, Kazuhiko Tsuruya, Ichiei Narita, Masato Kasahara, Yugo Shibagaki, Kunitoshi Iseki, Toshiki Moriyama, Masahide Kondo, Tsuyoshi Watanabe
Software Mentions: 5
Published: almost 6 years ago
10.1371/journal.pntd.0007910
Dispersal patterns of Trypanosoma cruzi in Arequipa, PeruCited by: 4
Author(s): Alexander S. F. Berry, Renzo Salazar-Sánchez, Ricardo Castillo-Neyra, Katty Borrini-Mayorí, Claudia Arevalo-Nieto, Claudia Chipana-Ramos, Melina Vargas-Maquera, Jenny Ancca-Juárez, César Náquira-Velarde, Michael Z. Levy, Dustin Brisson
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pone.0257976
Prevalence of HER2 overexpression and amplification in cervical cancer: A systematic review and meta-analysisCited by: 6
Author(s): Boris Itkin, Agustín Emilio García, Samanta Straminsky, Eduardo Daniel Adelchanow, Matías G. Pereyra, Gabriela Acosta Haab, Ariel Bardach
Software Mentions: 5
Published: almost 5 years ago
10.1371/journal.pone.0252154
Hydrological and topographic determinants of biomass and species richness in a Mediterranean-climate shrublandCited by: 1
Author(s): Samantha Díaz de León-Guerrero, Rodrigo Méndez‐Alonzo, Stephen H. Bullock, Enrique R. Vivoni
Software Mentions: 5
Published: about 5 years ago
10.1371/journal.pntd.0009306
The transcriptional landscape of Venezuelan equine encephalitis virus (TC-83) infectionCited by: 4
Author(s): Zhiyuan Yao, Fabio Zanini, Sathish Kumar, Marwah Karim, Sirle Saul, Nishank Bhalla, Nuttada Panpradist, Avery Muniz, Aarthi Narayanan, Stephen R. Quake, Shirit Einav
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0251458
Statistical privacy-preserving message broadcast for peer-to-peer networksCited by: 1
Author(s): David Mödinger, Jan-Hendrik Lorenz, Franz J. Hauck
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pcbi.1008182
MONET: Multi-omic module discovery by omic selectionCited by: 9
Author(s): Nimrod Rappoport, Roy Safra, Ron Shamir
Software Mentions: 5
Published: almost 6 years ago
10.1371/journal.pone.0238557
eDNA metabarcoding as a biomonitoring tool for marine protected areasCited by: 67
Author(s): Zachary Gold, Joshua Sprague, David J. Kushner, Erick Zerecero Marin, Paul H. Barber
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pcbi.1009316
A probabilistic model for the ultradian timing of REM sleep in miceCited by: 6
Author(s): Sung-Ho Park, Justin Baik, June Seok Hong, Hanna Antila, Benjamin Kurland, Shinjae Chung, Franz Weber
Software Mentions: 5
Published: almost 5 years ago
10.1371/journal.pone.0252685
Expanded transcriptomic view of strawberry fruit ripening through meta-analysisCited by: 0
Author(s): Gibum Yi, Hosub Shin, Kyeonglim Min, Eun Jin Lee
Software Mentions: 5
Published: about 5 years ago
10.1371/journal.pone.0233731
Eyebrow position in grammatical and emotional expressions in Kazakh-Russian Sign Language: A quantitative studyCited by: 8
Author(s): Vadim Kimmelman, Alfarabi Imashev, Medet Mukushev, Anara Sandygulova
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pcbi.1008473
A joint modeling approach for longitudinal microbiome data improves ability to detect microbiome associations with diseaseCited by: 7
Author(s): Pamela N. Luna, Jonathan M. Mansbach, Chad A. Shaw
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pcbi.1007481
Bayesian inference of neuronal assembliesCited by: 18
Author(s): Giovanni Diana, Thomas T. J. Sainsbury, Martin P. Meyer
Software Mentions: 5
Published: almost 7 years ago
10.1371/journal.pcbi.1008893
Computation of the electroencephalogram (EEG) from network models of point neuronsCited by: 19
Author(s): Pablo Martínez‐Cañada, Torbjørn V. Ness, Gaute T. Einevoll, Tommaso Fellin, Stefano Panzeri
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0230594
A Zipf-plot based normalization method for high-throughput RNA-seq dataCited by: 6
Author(s): Bin Wang
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pone.0232963
Identifying the key regulators that promote cell-cycle activity in the hearts of early neonatal pigs after myocardial injuryCited by: 11
Author(s): Eric Zhang, Thanh Nguyen, Meng Zhao, Son Do Hai Dang, Jake Y. Chen, Weihua Bian, Gregory P. Walcott
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pcbi.1007663
RAINBOW: Haplotype-based genome-wide association study using a novel SNP-set methodCited by: 36
Author(s): Kosuke Hamazaki, Hiroyoshi Iwata
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pmed.1003076
Comprehensive infectious disease screening in a cohort of unaccompanied refugee minors in Germany from 2016 to 2017: A cross-sectional studyCited by: 18
Author(s): Aleš Janda, Kristin Eder, Roland Fressle, Anne Geweniger, Natalie Diffloth, Maximilian Heeg, Nadine Binder, Ana-Gabriela Sitaru, Jan Rohr, Philipp Henneke, Markus Hufnagel, Roland Elling
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pone.0249994
Modeling impacts of faster productivity growth to inform the CGIAR initiative on Crops to End HungerCited by: 15
Author(s): Keith Wiebe, Timothy B. Sulser, Shahnila Dunston, Mark W. Rosegrant, Keith O. Fuglie, Dirk Willenbockel, Gerald C. Nelson
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pmed.1003151
Impact of physicians’ participation in non-interventional post-marketing studies on their prescription habits: A retrospective 2-armed cohort study in GermanyCited by: 4
Author(s): Cora Koch, Jörn Schleeff, Franka Techen, Daniel Wollschläger, Gisela Schott, Ralf Kölbel, Klaus Lieb
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pcbi.1008537
Factors influencing estimates of HIV-1 infection timing using BEASTCited by: 3
Author(s): Bethany L. Dearlove, Sodsai Tovanabutra, Christopher L. Owen, Éric Lewitus, Yifan Li, Eric Sanders‐Buell, Meera Bose, Anne Marie O’Sullivan, Gustavo H. Kijak, Shana Miller, Kultida Poltavee, Jenica Lee, Lydia Bonar, Elizabeth A. Harbolick, Bahar Ahani, Phuc Pham, Hannah Kibuuka, Lucas Maganga, Sorachai Nitayaphan, Fred Sawe, Jerome H. Kim, Leigh Anne Eller, Sandhya Vasan, Robert A. Gramzinski, Nelson L. Michael, Merlin L. Robb, Morgane Rolland
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pcbi.1007438
Humans adapt their anticipatory eye movements to the volatility of visual motion propertiesCited by: 8
Author(s): Chloé Pasturel, Anna Montagnini, Laurent Perrinet
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pone.0241861
Lipopolysaccharide triggers different transcriptional signatures in taurine and indicine cattle macrophages: Reactive oxygen species and potential outcomes to the development of immune response to infectionsCited by: 5
Author(s): Raquel Morais de Paiva Daibert, Carlos Alberto Oliveira de Biagi, Felipe de Oliveira Vieira, Marcos Vinícius Gualberto Barbosa da Silva, Eugênio D. Hottz, Mariana Brandi Mendonça Pinheiro, Daniele Ribeiro de Lima Reis Faza, Hyago Passe Pereira, Marta Fonseca Martins, Humberto M. Brandão, M. A. Machado, Wanessa A. Carvalho
Software Mentions: 5
Published: almost 6 years ago
10.1371/journal.pone.0244339
The effects of the sex chromosomes on the inheritance of species-specific traits of the copulatory organ shape in Drosophila virilis and Drosophila lummeiCited by: 1
Author(s): А. М. Куликов, S. Yu. Sorokina, А. И. Мельников, Н. Г. Горностаев, Dmitriy G. Seleznev, O. E. Lazebny
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0232313
Suitability of resampled multispectral datasets for mapping flowering plants in the Kenyan savannahCited by: 0
Author(s): David Masereti Makori, Elfatih M. Abdel‐Rahman, Tobias Landmann, Onisimo Mutanga, John Odindi, Evelyn Masereti Nguku, Henri E. Z. Tonnang, Satish Raina
Software Mentions: 5
Published: almost 6 years ago
10.1371/journal.pcbi.1007636
Structural diversity of B-cell receptor repertoires along the B-cell differentiation axis in humans and miceCited by: 23
Author(s): Aleksandr Kovaltsuk, Matthew I. J. Raybould, Wing Ki Wong, Claire Marks, Sebastian Kelm, James Snowden, Johannes Trück, Charlotte M. Deane
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pcbi.1008988
Molecular dynamics shows complex interplay and long-range effects of post-translational modifications in yeast protein interactionsCited by: 10
Author(s): Nikolina Šoštarić, Vera van Noort
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0229695
Psychometric characteristics and factorial structures of the Defensive Pessimism Questionnaire—Spanish Version (DPQ-SV)Cited by: 1
Author(s): Carmen Ramírez‐Maestre, Rosa Esteve, Elena R. Serrano‐Ibáñez, Alicia E. López‐Martínez, Gema T. Ruiz‐Párraga, Teresa Rivas Moya
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pone.0236889
Molecular characterization of Campylobacter spp. recovered from beef, chicken, lamb and pork products at retail in AustraliaCited by: 13
Author(s): Rhiannon L. Wallace, Dieter Bulach, Amy V. Jennison, Mary Valcanis, Angus McLure, James J. Smith, Trudy Graham, Themy Saputra, Simon M. Firestone, Sally Symes, Natasha Waters, Anastasia Stylianopoulos, Martyn Kirk, Kathryn Glass
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pcbi.1009346
The importance of non-pharmaceutical interventions during the COVID-19 vaccine rolloutCited by: 48
Author(s): Nicolò Gozzi, Paolo Bajardi, Nicola Perra
Software Mentions: 5
Published: almost 5 years ago
10.1371/journal.pone.0223374
Analysis of the protein composition of the spindle pole body during sporulation in Ashbya gossypiiCited by: 2
Author(s): Dario Wabner, Tom Overhageböck, Doris Nordmann, Julia Kronenberg, Florian Kramer, Hans‐Peter Schmitz
Software Mentions: 5
Published: almost 7 years ago
10.1371/journal.pcbi.1007520
A novel network control model for identifying personalized driver genes in cancerCited by: 39
Author(s): Weifeng Guo, Shao-Wu Zhang, Tao Zeng, Yan Li, Jianxi Gao, Luonan Chen
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pcbi.1009350
Evaluating the effectiveness of ensemble voting in improving the accuracy of consensus signals produced by various DTWA algorithms from step-current signals generated during nanopore sequencingCited by: 0
Author(s): M. R. Smith, Rachel Chan, Maaz Khurram, Paul M. Gordon
Software Mentions: 5
Published: almost 5 years ago
10.1371/journal.pgen.1008511
JMJD6 participates in the maintenance of ribosomal DNA integrity in response to DNA damageCited by: 11
Author(s): Jérémie Fages, Catherine Chailleux, Jonathan Humbert, Suk-Min Jang, Jérémy Loehr, Jean-Philippe Lambert, Jacques Côté, Didier Trouche, Yvan Canitrot
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pone.0237412
The impact of different negative training data on regulatory sequence predictionsCited by: 3
Author(s): Louisa-Marie Krützfeldt, Max Schubach, Martin Kircher
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0255598
A Bayesian approach to reveal the key role of mask wearing in modulating projected interpersonal distance during the first COVID-19 outbreakCited by: 20
Author(s): Matteo P. Lisi, Marina Scattolin, Martina Fusaro, Salvatore Maria Aglioti
Software Mentions: 5
Published: about 5 years ago
10.1371/journal.pone.0257445
TRIM59: A potential diagnostic and prognostic biomarker in human tumorsCited by: 2
Author(s): Zheng Jin, Liping Liu, Youran Yu, Dong Li, X. D. Zhu, Dongmei Yan, Zhifeng Zhu
Software Mentions: 5
Published: almost 5 years ago
10.1371/journal.pone.0232931
The prevalence of hepatitis C virus in hemodialysis patients in Pakistan: A systematic review and meta-analysisCited by: 9
Author(s): Sohail Akhtar, Jamal Abdul Nasir, Muhammad Usman, Aqsa Sarwar, Rizwana Majeed, Baki Billah
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pcbi.1007866
Learning clinical networks from medical records based on information estimates in mixed-type dataCited by: 8
Author(s): Vincent Cabeli, Louis Verny, Nadir Sella, Guido Uguzzoni, Marc Verny, Hervé Isambert
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pone.0245324
InsectOR—Webserver for sensitive identification of insect olfactory receptor genes from non-model genomesCited by: 10
Author(s): Snehal D. Karpe, Vikas Tiwari, R. Sowdhamini
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pcbi.1009256
Computational identification and experimental characterization of preferred downstream positions in human core promotersCited by: 2
Author(s): René Dreos, Anna Sloutskin, Nati Malachi, Diana Ideses, Philipp Bücher, Tamar Juven‐Gershon
Software Mentions: 5
Published: about 5 years ago
10.1371/journal.pone.0256554
Is it easier to use one language variety at a time, or mix them? An investigation of voluntary language switching with bidialectalsCited by: 1
Author(s): Mathieu Declerck, Neil W. Kirk
Software Mentions: 5
Published: almost 5 years ago
10.1371/journal.pcbi.1008457
Searching through functional space reveals distributed visual, auditory, and semantic coding in the human brainCited by: 4
Author(s): Sreejan Kumar, Cameron T. Ellis, Thomas O’Connell, Marvin M. Chun, Nicholas B. Turk‐Browne
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0241231
A taxonomic and molecular survey of the pteridophytes of the Nectandra Cloud Forest Reserve, Costa RicaCited by: 7
Author(s): Joel H. Nitta, Atsushi Ebihara, Alan Р. Smith
Software Mentions: 5
Published: almost 6 years ago
10.1371/journal.pone.0237066
Lack of TLR4 modifies the miRNAs profile and attenuates inflammatory signaling pathwaysCited by: 12
Author(s): Juan R. Ureña‐Peralta, Raúl Pérez-Moraga, Francisco García‐García, Consuelo Guerri
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pcbi.1008735
From heterogeneous healthcare data to disease-specific biomarker networks: A hierarchical Bayesian network approachCited by: 9
Author(s): Ann‐Kristin Becker, Marcus Dörr, Stephan B. Felix, Fabian Frost, Hans J. Grabe, Markus M. Lerch, Matthias Nauck, Uwe Völker, Henry Völzke, Lars Kaderali
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0239480
Horizontal and vertical movements of starry smooth-hound Mustelus asterias in the northeast AtlanticCited by: 4
Author(s): Christopher A. Griffiths, Serena Wright, Joana F. Silva, Jim R. Ellis, David Righton, Sophy R. McCully Phillips
Software Mentions: 5
Published: almost 6 years ago
10.1371/journal.pone.0231695
Genetic algorithm-based personalized models of human cardiac action potentialCited by: 18
Author(s): Dmitrii Smirnov, Andrey Pikunov, Roman Syunyaev, Ruslan Deviatiiarov, Oleg Gusev, Kedar Aras, Anna Gams, Aaron C. Koppel, Igor R. Efimov
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pone.0234908
Machine learning and natural language processing methods to identify ischemic stroke, acuity and location from radiology reportsCited by: 59
Author(s): Charlene Ong, Agni Orfanoudaki, Rebecca Zhang, Francois Pierre M. Caprasse, Meghan R. Hutch, Liang Ma, Darian Fard, Oluwafemi Balogun, Matthew Miller, Margaret A. Minnig, Hanife Saglam, Brenton Prescott, David M. Greer, Stelios M. Smirnakis, Dimitris Bertsimas
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pcbi.1007904
Restriction of S-adenosylmethionine conformational freedom by knotted protein binding sitesCited by: 7
Author(s): Agata P. Perlinska, Adam Stasiulewicz, Ewa K. Nawrocka, Krzysztof Kazimierczuk, Piotr Setny, Joanna I. Sułkowska
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pgen.1009784
R-loops and regulatory changes in chronologically ageing fission yeast cells drive non-random patterns of genome rearrangementsCited by: 1
Author(s): D. S. Ellis, Félix Reyes-Martín, María Rodríguez-López, Cristina Cotobal, Xi‐Ming Sun, Quentin Saintain, Daniel C. Jeffares, Samuel Marguerat, Juan Jiménez, Jürg Bähler
Software Mentions: 5
Published: almost 5 years ago
10.1371/journal.pcbi.1007799
ScalaFlux: A scalable approach to quantify fluxes in metabolic subnetworksCited by: 12
Author(s): Pierre Millard, Uwe Schmitt, Patrick Kiefer, Julia A. Vorholt, Stéphanie Heux, Jean‐Charles Portais
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pcbi.1009138
Behavioral correlates of cortical semantic representations modeled by word vectorsCited by: 6
Author(s): Shogo Nishida, Antione Blanc, Naoya Maeda, Masataka Kado, Shinji Nishimoto
Software Mentions: 5
Published: about 5 years ago
10.1371/journal.pcbi.1008819
Boosting GWAS using biological networks: A study on susceptibility to familial breast cancerCited by: 3
Author(s): Héctor Climente-González, Christine Lonjou, Fabienne Lesueur, Dominique Stoppa‐Lyonnet, Nadine Andrieu, Chloé-Agathe Azencott
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0240932
Bridging of nucleosome-proximal DNA double-strand breaks by PARP2 enhances its interaction with HPF1Cited by: 27
Author(s): Guillaume Gaullier, Genevieve Roberts, Uma M. Muthurajan, Samuel Bowerman, Johannes Rudolph, Jyothi Mahadevan, Asmita Jha, Purushka S. Rae, Karolin Luger
Software Mentions: 5
Published: almost 6 years ago
10.1371/journal.pone.0255436
Global distribution of sporadic sapovirus infections: A systematic review and meta-analysisCited by: 8
Author(s): Marta Diez‐Valcarce, Anita Kambhampati, Laura Calderwood, Aron J. Hall, Sara Mirza, Jan Vinjé
Software Mentions: 5
Published: almost 5 years ago
10.1371/journal.pgen.1009697
A fast and robust Bayesian nonparametric method for prediction of complex traits using summary statisticsCited by: 27
Author(s): Geyu Zhou, Hongyu Zhao
Software Mentions: 5
Published: about 5 years ago
10.1371/journal.pone.0244724
Geography as non-genetic modulation factor of chicken cecal microbiotaCited by: 8
Author(s): Natalia Daniela Pin Viso, Enzo A. Redondo, Juan María Díaz Carrasco, Leandro M. Redondo, Javier García, Mariano E. Fernández‐Miyakawa, Marisa Diana Farber
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0249899
A pseudomolecule assembly of the Rocky Mountain elk genomeCited by: 2
Author(s): Rick E. Masonbrink, David P. Alt, Darrell O. Bayles, Paola M. Boggiatto, William H. Edwards, Fred M. Tatum, Jeffrey T. Williams, Jennifer H. Wilson-Welder, Aleksey V. Zimin, Andrew J. Severin, Steven C. Olsen
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0256503
PyPlutchik: Visualising and comparing emotion-annotated corporaCited by: 16
Author(s): Alfonso Semeraro, Salvatore Vilella, Giancarlo Ruffo
Software Mentions: 5
Published: almost 5 years ago
10.1371/journal.pcbi.1008806
VolPy: Automated and scalable analysis pipelines for voltage imaging datasetsCited by: 17
Author(s): Changjia Cai, Johannes Friedrich, Amrita Singh, M. Hossein Eybposh, Eftychios A. Pnevmatikakis, Kaspar Podgorski, Andrea Giovannucci
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pgen.1009018
The causal effect of obesity on prediabetes and insulin resistance reveals the important role of adipose tissue in insulin resistanceCited by: 24
Author(s): Min‐Hua Zong, Marcus Alvarez, Arthur Ko, Yash V. Bhagat, Elior Rahmani, Brandon Jew, Sini Heinonen, Liliana Muñóz-Hernández, Miguel Francisco Herrera-Hernández, Carlos A. Aguilar-Salinas, Teresa Tusié-Luna, Karen L. Mohlke, Markku Laakso, Kirsi H. Pietiläinen, Eran Halperin, Päivi Pajukanta
Software Mentions: 5
Published: almost 6 years ago
10.1371/journal.pone.0250390
Impact of ecotourism on abundance, diversity and activity patterns of medium-large terrestrial mammals at Brownsberg Nature Park, SurinameCited by: 12
Author(s): Dimitri A. Ouboter, Vanessa Kadosoe, Paul E. Ouboter
Software Mentions: 5
Published: about 5 years ago