10.1371/journal.pone.0250568

NMR analysis of the correlation of metabolic changes in blood and cerebrospinal fluid in Alzheimer model male and female mice
Cited by: 2
Author(s): Filip Stojanovic, Mariam Taktek, Nam Huan Khieu, Junzhou Huang, Shuxian Jiang, Kerry Rennie, Balu Chakravarthy, Willard J. Costain, Miroslava Čuperlović-Culf
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0257445

TRIM59: A potential diagnostic and prognostic biomarker in human tumors
Cited by: 2
Author(s): Zheng Jin, Liping Liu, Youran Yu, Dong Li, X. D. Zhu, Dongmei Yan, Zhifeng Zhu
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pmed.1003076

Comprehensive infectious disease screening in a cohort of unaccompanied refugee minors in Germany from 2016 to 2017: A cross-sectional study
Cited by: 18
Author(s): Aleš Janda, Kristin Eder, Roland Fressle, Anne Geweniger, Natalie Diffloth, Maximilian Heeg, Nadine Binder, Ana-Gabriela Sitaru, Jan Rohr, Philipp Henneke, Markus Hufnagel, Roland Elling
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.ppat.1009769

Virulence and community dynamics of fungal species with vertical and horizontal transmission on a plant with multiple infections
Cited by: 11
Author(s): Kai Fang, Jie Zhou, Lin Chen, Yuxuan Li, Ai-Ling Yang, Xing-Fan Dong, Hanbo Zhang
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0240894

Trends in de-lousing of Norwegian farmed salmon from 2000–2019—Consumption of medicines, salmon louse resistance and non-medicinal control methods
Cited by: 20
Author(s): Elena Myhre Jensen, Tor Einar Horsberg, Sigmund Sevatdal, Kari Olli Helgesen
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0232313

Suitability of resampled multispectral datasets for mapping flowering plants in the Kenyan savannah
Cited by: 0
Author(s): David Masereti Makori, Elfatih M. Abdel‐Rahman, Tobias Landmann, Onisimo Mutanga, John Odindi, Evelyn Masereti Nguku, Henri E. Z. Tonnang, Satish Raina
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0255838

Optimal distribution-preserving downsampling of large biomedical data sets (opdisDownsampling)
Cited by: 9
Author(s): Jörn Lötsch, Sebastian Malkusch, Alfred Ultsch
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0246269

Skewed logit model for analyzing correlated infant morbidity data
Cited by: 6
Author(s): Ngugi Mwenda, Ruth Nduati, Mathew Kosgei, Gregory Kerich
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0241861

Lipopolysaccharide triggers different transcriptional signatures in taurine and indicine cattle macrophages: Reactive oxygen species and potential outcomes to the development of immune response to infections
Cited by: 5
Author(s): Raquel Morais de Paiva Daibert, Carlos Alberto Oliveira de Biagi, Felipe de Oliveira Vieira, Marcos Vinícius Gualberto Barbosa da Silva, Eugênio D. Hottz, Mariana Brandi Mendonça Pinheiro, Daniele Ribeiro de Lima Reis Faza, Hyago Passe Pereira, Marta Fonseca Martins, Humberto M. Brandão, M. A. Machado, Wanessa A. Carvalho
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0223374

Analysis of the protein composition of the spindle pole body during sporulation in Ashbya gossypii
Cited by: 2
Author(s): Dario Wabner, Tom Overhageböck, Doris Nordmann, Julia Kronenberg, Florian Kramer, Hans‐Peter Schmitz
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0232931

The prevalence of hepatitis C virus in hemodialysis patients in Pakistan: A systematic review and meta-analysis
Cited by: 9
Author(s): Sohail Akhtar, Jamal Abdul Nasir, Muhammad Usman, Aqsa Sarwar, Rizwana Majeed, Baki Billah
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0246297

Rhabdomyolysis related to acute recreational drug toxicity—A Euro-DEN study
Cited by: 9
Author(s): W. James Waldman, Piotr Maciej Kabata, Alison Dines, David M. Wood, Chris Yates, Fridtjof Heyerdahl, Knut Erik Hovda, Isabelle Giraudon, Jacek Sein Anand
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0229695

Psychometric characteristics and factorial structures of the Defensive Pessimism Questionnaire—Spanish Version (DPQ-SV)
Cited by: 1
Author(s): Carmen Ramírez‐Maestre, Rosa Esteve, Elena R. Serrano‐Ibáñez, Alicia E. López‐Martínez, Gema T. Ruiz‐Párraga, Teresa Rivas Moya
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.ppat.1009701

Control of SARS-CoV-2 infection after Spike DNA or Spike DNA+Protein co-immunization in rhesus macaques
Cited by: 11
Author(s): Margherita Rosati, Mahesh Agarwal, Xintao Hu, Santhi Devasundaram, Dimitris Stellas, Bhabadeb Chowdhury, Jenifer Bear, Robert T. Burns, Duncan Donohue, Laurent Pessaint, Hanné Andersen, Mark G. Lewis, Evangelos Terpos, Meletios A. Dimopoulos, Alexander Wlodawer, James I. Mullins, David Venzon, George N. Pavlakis, Barbara K. Felber
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0252457

Lack of parent-of-origin effects in Nasonia jewel wasp: A replication and extension study
Cited by: 1
Author(s): Kimberly C. Olney, Joshua D. Gibson, Heini M. Natri, Avery Underwood, Juergen Gadau, Melissa A. Wilson
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0229277

Habitat selection in natural and human-modified landscapes by capybaras (Hydrochoerus hydrochaeris), an important host for Amblyomma sculptum ticks
Cited by: 12
Author(s): Thiago C. Dias, Jared A. Stabach, Qiongyu Huang, Marcelo B. Labruna, Peter Leimgruber, Kátia Maria Paschoaletto Micchi de Barros Ferraz, Beatriz Lopes, Hermes Ribeiro Luz, Francisco Borges Costa, Hector Ribeiro Benatti, Lucas Ribeiro Correa, Ana Maria Nievas, Patrícia Ferreira Monticelli, Ubiratan Piovezan, Matias Pablo Juán Szabó, Daniel Moura de Aguiar, José Brites-Neto, Márcio Port-Carvalho, Vlamir José Rocha
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0238304

Investigation of gene-gene interactions in cardiac traits and serum fatty acid levels in the LURIC Health Study
Cited by: 5
Author(s): Jiayan Zhou, Kristin Passero, Nicole Palmiero, Bertram Müller‐Myhsok, Marcus E. Kleber, Winfried Maerz, Molly A. Hall
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0243265

Genomic variation and epidemiology of SARS-CoV-2 importation and early circulation in Israel
Cited by: 4
Author(s): Neta S. Zuckerman, Efrat Bucris, Yaron Drori, Oran Erster, Danit Sofer, Rakefet Pando, Ella Mendelson, Orna Mor, Michal Mandelboim
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0228880

Spatio-temporal variation of Cerambycidae-host tree interaction networks
Cited by: 8
Author(s): Michelle Ramos‐Robles, Orthon Ricardo Vargas‐Cardoso, Angélica María Corona‐López, Alejandro Flores‐Palacios, Víctor Hugo Toledo‐Hernández
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0257564

Tree species identity and composition shape the epiphytic lichen community of structurally simple boreal forests over vast areas
Cited by: 7
Author(s): Julian Klein, Matthew Low, Göran Thor, Jörgen Sjögren, Eva Lindberg, Sönke Eggers
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0237601

Impact of calculated plasma volume status on all-cause and cardiovascular mortality: 4-year nationwide community-based prospective cohort study
Cited by: 14
Author(s): Yoichiro Otaki, Tetsu Watanabe, Tsuneo Konta, Masafumi Watanabe, Koichi Asahi, Kunihiro Yamagata, Shouichi Fujimoto, Kazuhiko Tsuruya, Ichiei Narita, Masato Kasahara, Yugo Shibagaki, Kunitoshi Iseki, Toshiki Moriyama, Masahide Kondo, Tsuyoshi Watanabe
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0226435

The acute myeloid leukemia associated AML1-ETO fusion protein alters the transcriptome and cellular progression in a single-oncogene expressing in vitro induced pluripotent stem cell based granulocyte differentiation model
Cited by: 15
Author(s): Esther Tijchon, Guoqiang Yi, Amit Mandoli, Jos G. A. Smits, Francesco Ferrari, Branco M. H. Heuts, Falco Wijnen, Bowon Kim, Eva M. Janssen-Megens, Jan Jacob Schuringa, Joost H.A. Martens
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0229502

A background correction method to compensate illumination variation in hyperspectral imaging
Cited by: 6
Author(s): Jonghee Yoon, Alexandru Grigoroiu, Sarah E. Bohndiek
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0256503

PyPlutchik: Visualising and comparing emotion-annotated corpora
Cited by: 16
Author(s): Alfonso Semeraro, Salvatore Vilella, Giancarlo Ruffo
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0222737

Annual replication is essential in evaluating the response of the soil microbiome to the genetic modification of maize in different biogeographical regions
Cited by: 6
Author(s): Márton Szoboszlay, Astrid Näther, Ewen Mullins, Christoph C. Tebbe
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0234552

Multiple measures derived from 3D photonic body scans improve predictions of fat and muscle mass in young Swiss men
Cited by: 8
Author(s): Roman Sager, Sabine Güsewell, Frank J Rühli, Nicole Bender, Kaspar Staub
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0242662

Assessing roost disturbance of straw-coloured fruit bats (Eidolon helvum) through tri-axial acceleration
Cited by: 2
Author(s): Tânia Domingues Costa, Carlos David Santos, Ana Rainho, Michael Abedi-Lartey, Jakob Fahr, Martin Wikelski, Dina K. N. Dechmann
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0249899

A pseudomolecule assembly of the Rocky Mountain elk genome
Cited by: 2
Author(s): Rick E. Masonbrink, David P. Alt, Darrell O. Bayles, Paola M. Boggiatto, William H. Edwards, Fred M. Tatum, Jeffrey T. Williams, Jennifer H. Wilson-Welder, Aleksey V. Zimin, Andrew J. Severin, Steven C. Olsen
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0252154

Hydrological and topographic determinants of biomass and species richness in a Mediterranean-climate shrubland
Cited by: 1
Author(s): Samantha Díaz de León-Guerrero, Rodrigo Méndez‐Alonzo, Stephen H. Bullock, Enrique R. Vivoni
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0255436

Global distribution of sporadic sapovirus infections: A systematic review and meta-analysis
Cited by: 8
Author(s): Marta Diez‐Valcarce, Anita Kambhampati, Laura Calderwood, Aron J. Hall, Sara Mirza, Jan Vinjé
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0242927

Novel methods for epistasis detection in genome-wide association studies
Cited by: 7
Author(s): Lotfi Slim, Clément Chatelain, Chloé-Agathe Azencott, Jean-Philippe Vert
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0243105

Machine learning-based e-commerce platform repurchase customer prediction model
Cited by: 14
Author(s): Cheng-Ju Liu, Tienshou Huang, Ping-Tsan Ho, Jui-Chan Huang, Ching-Tang Hsieh
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0243310

Genetic and morphometric variability between populations of Betula ×oycoviensis from Poland and Czechia: A revised view of the taxonomic treatment of the Ojców birch
Cited by: 2
Author(s): Rostislav Linda, I. Kuneš, Martin Baláš
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0238557

eDNA metabarcoding as a biomonitoring tool for marine protected areas
Cited by: 67
Author(s): Zachary Gold, Joshua Sprague, David J. Kushner, Erick Zerecero Marin, Paul H. Barber
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0238972

India nudges to contain COVID-19 pandemic: A reactive public policy analysis using machine-learning based topic modelling
Cited by: 58
Author(s): Ramit Debnath, Ronita Bardhan
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pntd.0008046

Genomic epidemiology of Vibrio cholerae reveals the regional and global spread of two epidemic non-toxigenic lineages
Cited by: 15
Author(s): Haoqiu Wang, Chao Yang, Sun Zhou, Wei Zheng, Wei Zhang, Hua Yu, Yarong Wu, Xavier Didelot, Ruifu Yang, Jinren Pan, Yu‐Jun Cui
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pntd.0007876

Microsatellite analysis reveals connectivity among geographically distant transmission zones of Plasmodium vivax in the Peruvian Amazon: A critical barrier to regional malaria elimination
Cited by: 11
Author(s): Paulo Manrique, Julio Miranda-Alban, Jhonatan Alarcon-Baldeon, Roberson Ramirez, Gabriel Carrasco-Escobar, Henry Herrera, Mitchel Guzmán-Guzmán, Ángel Rosas Aguirre, Alejandro Llanos‐Cuentas, Joseph M. Vinetz, Ananías A. Escalante, Dionicia Gamboa
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pgen.1009726

The genetic consequences of dog breed formation—Accumulation of deleterious genetic variation and fixation of mutations associated with myxomatous mitral valve disease in cavalier King Charles spaniels
Cited by: 8
Author(s): Erik Axelsson, Ingrid Ljungvall, Priyasma Bhoumik, Laura Bas Conn, Eva Murén, Åsa Ohlsson, Lisbeth H. Olsen, Karolina Engdahl, Ragnvi Hagman, Jeanette Hanson, Dmytro Kryvokhyzha, Mats E. Pettersson, Olivier Grenet, Jonathan G. Moggs, Alberto Del Río-Espínola, Christian Epe, Bruce E. Taillon, Nilesh R. Tawari, Shrinivas Mane, Troy Hawkins, Åke Hedhammar, Philippe Gruet, Jens Häggström, Kerstin Lindblad‐Toh
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0252036

Age-related changes in diffuse optical tomography sensitivity profiles in infancy
Cited by: 5
Author(s): Xiaoxue Fu, John E. Richards
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0253656

Relative age effect? No “flipping” way! Apparatus dependent inverse relative age effects in elite, women’s artistic gymnastics
Cited by: 4
Author(s): Eleanor Langham-Walsh, Vicky Gottwald, James Hardy
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0247037

A new perspective and assessment measure for common dissociative experiences: ‘Felt Sense of Anomaly’
Cited by: 10
Author(s): Emma Černis, Esther T. Beierl, Andrew Molodynski, Anke Ehlers, Daniel Freeman
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0247669

Immune gene expression networks in sepsis: A network biology approach
Cited by: 13
Author(s): Kyung Soo Kim, Dong Wook Jekarl, Jaeeun Yoo, Seungok Lee, Myungshin Kim, Yonggoo Kim
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pntd.0009397

Global patterns of aegyptism without arbovirus
Cited by: 10
Author(s): Mark F. Olson, José G. Juárez, Moritz U. G. Kraemer, Jane P. Messina, Gabriel L. Hamer
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0255477

Changes and prognostic value of cardiopulmonary exercise testing parameters in elderly patients undergoing cardiac rehabilitation: The EU-CaRE observational study
Cited by: 2
Author(s): Thimo Marcin, Prisca Eser, Eva Prescott, Leonie F Prins, Evelien Kolkman, Wendy Bruins, Astrid E van der Velde, Carlos Peña-Gil, Marie‐Christine Iliou, Diego Ardissino, Uwe Zeymer, Esther P. Meindersma, Arnoud W.J. van’t Hof, Ed P de Kluiver, Matthias Wilhelm
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0251963

Factors indicating intention to vaccinate with a COVID-19 vaccine among older U.S. adults
Cited by: 55
Author(s): Janeta Nikolovski, Martin Koldijk, Gerrit Jan Weverling, John A. Spertus, Mintu P. Turakhia, Leslie A. Saxon, C. Michael Gibson, John Whang, Troy C. Sarich, Robert A. Zambon, Nnamdi Ezeanochie, Jennifer Turgiss, Robyn Jones, Jeff Stoddard, Paul R. Burton, Ann Marie Návar
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pgen.1009121

A frog with three sex chromosomes that co-mingle together in nature: Xenopus tropicalis has a degenerate W and a Y that evolved from a Z chromosome
Cited by: 20
Author(s): Benjamin L. S. Furman, Caroline M S Cauret, Martin Knytl, Xuhong Song, Tharindu Premachandra, Caleb Ofori‐Boateng, Danielle C. Jordan, Marko E. Horb, Ben Evans
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0230492

Image-based metric of invasiveness predicts response to adjuvant temozolomide for primary glioblastoma
Cited by: 11
Author(s): Susan Christine Massey, Haylye White, Paula Whitmire, Tatum E Doyle, Sandra K. Johnston, Kyle Singleton, Pamela Jackson, Andrea Hawkins-Daarud, Bernard R. Bendok, Alyx Porter, Sujay A. Vora, Jann N. Sarkaria, Leland Hu, Maciej M. Mrugala, Kristin R. Swanson
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0244363

Backbone: An R package for extracting the backbone of bipartite projections
Cited by: 20
Author(s): Rachel Domagalski, Zachary P. Neal, Bruce E. Sagan
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pgen.1009455

MRLocus: Identifying causal genes mediating a trait through Bayesian estimation of allelic heterogeneity
Cited by: 19
Author(s): Anqi Zhu, Nana Matoba, Emmaleigh Wilson, Amanda L. Tapia, Yun Li, Joseph G. Ibrahim, Jason L. Stein, Michael I. Love
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0257343

Analysis of potential genetic biomarkers and molecular mechanism of smoking-related postmenopausal osteoporosis using weighted gene co-expression network analysis and machine learning
Cited by: 7
Author(s): Shaoshuo Li, Baixing Chen, Hao Chen, Zhen Hua, Yang Shao, Heng Yin, Jianwei Wang
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0251458

Statistical privacy-preserving message broadcast for peer-to-peer networks
Cited by: 1
Author(s): David Mödinger, Jan-Hendrik Lorenz, Franz J. Hauck
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0249633

Climatic change and extinction risk of two globally threatened Ethiopian endemic bird species
Cited by: 13
Author(s): Andrew J. Bladon, Paul F. Donald, Nigel Collar, Jarso Denge, Galgalo Dadacha, Mengistu Wondafrash, Rhys E. Green
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0239485

Does behavioral thermal tolerance predict distribution pattern and habitat use in two sympatric Neotropical frogs?
Cited by: 9
Author(s): Juan C. Díaz‐Ricaurte, Filipe C. Serrano, Estefany Carolíne Guevara-Molina, Cybele de Oliveira Araújo, Marcio Roberto Martins
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0225805

Food from faeces: Evaluating the efficacy of scat DNA metabarcoding in dietary analyses
Cited by: 25
Author(s): David Thuo, Elise M. Furlan, Femke Broekhuis, Joseph Kamau, Kyle Macdonald, Dianne Gleeson
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0245958

Testing the causal mechanism of the peninsular effect in passerine birds from South Korea
Cited by: 2
Author(s): Jin–Yong Kim, Man‐Seok Shin, Chang Ho Seo, Soo Hyung Eo, Seungbum Hong
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0229052

Combined impact of pesticides and other environmental stressors on animal diversity in irrigation ponds
Cited by: 16
Author(s): Hiroshi C. Ito, Hiroaki Shiraishi, Megumi Nakagawa, Noriko Takamura
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0248967

The pulmonary mycobiome—A study of subjects with and without chronic obstructive pulmonary disease
Cited by: 13
Author(s): Einar Marius Hjellestad Martinsen, Tomas Mikal Eagan, Elise Orvedal Leiten, Ingvild Haaland, Gunnar Reksten Husebø, Kristel Svalland Knudsen, Christine Drengenes, Walter Sanseverino, Andreu Paytuví-Gallart, Rune Nielsen
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0230571

Using medical claims database to develop a population disease progression model for leuprorelin-treated subjects with hormone-sensitive prostate cancer
Cited by: 1
Author(s): Yixuan Zou, Fei Tang, Jeffery Talbert, Chee M. Ng
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0236796

Comparative study of neighboring Holm oak and olive trees-belowground microbial communities subjected to different soil management
Cited by: 9
Author(s): Antonio J. Fernández‐González, Nuria M. Wentzien, Pablo J. Villadas, Antonio Valverde-Corredor, Ana V. Lasa, Carmen Gómez-Lama Cabanás, Jesús Mercado‐Blanco, Manuel Fernández‐López
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0226575

Neuronal and glial DNA methylation and gene expression changes in early epileptogenesis
Cited by: 17
Author(s): Toni Berger, Magnus Dehli Vigeland, Hanne Sagsveen Hjorthaug, Lars Etholm, Cecilie G. Nome, Erik Taubøll, Kjell Heuser, Kaja Kristine Selmer
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0227486

The effect of storage conditions on microbial communities in stool
Cited by: 20
Author(s): Kristien Nel Van Zyl, Andrew Whitelaw, Mae Newton-Foot
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0234489

Application of network analysis and cluster analysis for better prevention and control of swine diseases in Argentina
Cited by: 11
Author(s): Jerome N. Baron, María Natalia Aznar, M. Monterubbianesi, Beatriz Martínez‐López
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pgen.1008770

Multiple mechanisms regulate H3 acetylation of enhancers in response to thyroid hormone
Cited by: 19
Author(s): Stine M. Præstholm, Majken Siersbæk, Ronni Nielsen, Xuguang Zhu, Anthony N. Hollenberg, Sheue-yann Cheng, Lars Grøntved
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0254876

Mapping the probability of forest snow disturbances in Finland
Cited by: 5
Author(s): Susanne Suvanto, Aleksi Lehtonen, Seppo Nevalainen, Ilari Lehtonen, Heli Viiri, Mikael Strandström, Mikko Peltoniemi
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0243609

MANTA, an integrative database and analysis platform that relates microbiome and phenotypic data
Cited by: 6
Author(s): Yi An Chen, Jonguk Park, Yayoi Natsume-Kitatani, Hitoshi Kawashima, Attayeb Mohsen, Koji Hosomi, Kumpei Tanisawa, Harumi Ohno, Kana Konishi, Haruka Murakami, Motohiko Miyachi, Jun Kunisawa, Kenji Mizuguchi
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0239486

BioPETsurv: Methodology and open source software to evaluate biomarkers for prognostic enrichment of time-to-event clinical trials
Cited by: 3
Author(s): Siyuan Cheng, Kathleen F. Kerr, Heather Thiessen-Philbrook, Steven G. Coca, Chirag R. Parikh
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0243205

Neuropeptide S receptor gene Asn107 polymorphism in obese male individuals in Pakistan
Cited by: 3
Author(s): Aftab Ahmad, Fahad Almsned, Pasha Ghazal, Malik Waqar Ahmed, M. Saleet Jafri, Habib Bokhari
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0236889

Molecular characterization of Campylobacter spp. recovered from beef, chicken, lamb and pork products at retail in Australia
Cited by: 13
Author(s): Rhiannon L. Wallace, Dieter Bulach, Amy V. Jennison, Mary Valcanis, Angus McLure, James J. Smith, Trudy Graham, Themy Saputra, Simon M. Firestone, Sally Symes, Natasha Waters, Anastasia Stylianopoulos, Martyn Kirk, Kathryn Glass
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0236874

What’s all that racket! Soundscapes, phenology, and biodiversity in estuaries
Cited by: 10
Author(s): Agnieszka Monczak, Bradshaw McKinney, Claire Mueller, Eric W. Montie
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pgen.1009820

Genomic population structure associated with repeated escape of Salmonella enterica ATCC14028s from the laboratory into nature
Cited by: 7
Author(s): Mark Achtman, Frederik Van den Broeck, Kerry K. Cooper, Philippe Lemey, Craig T. Parker, Zhemin Zhou
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pmed.1003229

Maternal dysglycaemia, changes in the infant’s epigenome modified with a diet and physical activity intervention in pregnancy: Secondary analysis of a randomised control trial
Cited by: 52
Author(s): Elie Antoun, Negusse Tadesse Kitaba, Philip Titcombe, Kathryn V. Dalrymple, Emma Garratt, Sheila J. Barton, Robert Murray, Paul Seed, Joanna D. Holbrook, Michael S. Kobor, David T.S. Lin, Julia L. MacIsaac, Graham C. Burdge, Sara L. White, Lucilla Poston, Keith M. Godfrey, Karen A. Lillycrop
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0244377

A methodology and theoretical taxonomy for centrality measures: What are the best centrality indicators for student networks?
Cited by: 7
Author(s): Kristel Vignery, Wim Laurier
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0237412

The impact of different negative training data on regulatory sequence predictions
Cited by: 3
Author(s): Louisa-Marie Krützfeldt, Max Schubach, Martin Kircher
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0250831

Environmentally triggered shifts in steelhead migration behavior and consequences for survival in the mid-Columbia River
Cited by: 5
Author(s): Jared E. Siegel, Lisa G. Crozier, Lauren E. Wiesebron, Daniel L. Widener
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pcbi.1008457

Searching through functional space reveals distributed visual, auditory, and semantic coding in the human brain
Cited by: 4
Author(s): Sreejan Kumar, Cameron T. Ellis, Thomas O’Connell, Marvin M. Chun, Nicholas B. Turk‐Browne
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pgen.1009443

Assessing the co-variability of DNA methylation across peripheral cells and tissues: Implications for the interpretation of findings in epigenetic epidemiology
Cited by: 27
Author(s): Eilís Hannon, Georgina Mansell, Emma Walker, Marta F. Nabais, Joe Burrage, Agnieszka Kepa, Janis Best-Lane, Anna Rose, Suzanne Heck, Terrie E. Moffitt, Avshalom Caspi, Louise Arseneault, Jonathan Mill
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pcbi.1007764

StanDep: Capturing transcriptomic variability improves context-specific metabolic models
Cited by: 19
Author(s): Chintan Joshi, Song‐Min Schinn, Anne Richelle, Isaac Shamie, Eyleen J. O’Rourke, Nathan E. Lewis
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pgen.1009389

Gene disruption by structural mutations drives selection in US rice breeding over the last century
Cited by: 6
Author(s): Justin N. Vaughn, Walid Korani, Joshua C. Stein, Jeremy D. Edwards, Daniel G. Peterson, Sheron Simpson, Ramey C Youngblood, Jane Grimwood, Kapeel Chougule, Doreen Ware, Anna M. McClung, Brian E. Scheffler
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pgen.1008790

Exclusive breastfeeding can attenuate body-mass-index increase among genetically susceptible children: A longitudinal study from the ALSPAC cohort
Cited by: 11
Author(s): Yan Yan Wu, Stephen J. Lye, Cindy‐Lee Dennis, Laurent Briollais
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pgen.1008261

Restricted and non-essential redundancy of RNAi and piRNA pathways in mouse oocytes
Cited by: 26
Author(s): Eliška Táborská, Josef Pasulka, Radek Malı́k, Filip Horvat, Irena Jenickova, Zoe Jelić Matošević, Petr Svoboda
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0231695

Genetic algorithm-based personalized models of human cardiac action potential
Cited by: 18
Author(s): Dmitrii Smirnov, Andrey Pikunov, Roman Syunyaev, Ruslan Deviatiiarov, Oleg Gusev, Kedar Aras, Anna Gams, Aaron C. Koppel, Igor R. Efimov
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pgen.1008687

Conserved nuclear hormone receptors controlling a novel plastic trait target fast-evolving genes expressed in a single cell
Cited by: 35
Author(s): Bogdan Sieriebriennikov, Shuai Sun, James W. Lightfoot, Hanh Witte, Eduardo Moreno, Christian Rödelsperger, Ralf J. Sommer
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pcbi.1008735

From heterogeneous healthcare data to disease-specific biomarker networks: A hierarchical Bayesian network approach
Cited by: 9
Author(s): Ann‐Kristin Becker, Marcus Dörr, Stephan B. Felix, Fabian Frost, Hans J. Grabe, Markus M. Lerch, Matthias Nauck, Uwe Völker, Henry Völzke, Lars Kaderali
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0253284

Landscape structure shapes the diversity of tree seedlings at multiple spatial scales in a fragmented tropical rainforest
Cited by: 4
Author(s): Sergio Nicasio‐Arzeta, Isela Zermeño‐Hernández, Susana Maza‐Villalobos, Julieta Benítez‐Malvido
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pgen.1009140

Drosophila Caliban preserves intestinal homeostasis and lifespan through regulating mitochondrial dynamics and redox state in enterocytes
Cited by: 12
Author(s): Zhaoxia Dai, Dong Liu, Xiao Du, Ying Ge, Deborah A. Hursh, Xiaolin Bi
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0248485

16S rRNA gene amplicon-based metagenomic analysis of bacterial communities in the rhizospheres of selected mangrove species from Mida Creek and Gazi Bay, Kenya
Cited by: 21
Author(s): Edith M. Muwawa, Chinedu Christopher Obieze, Huxley Mae Makonde, Joyce Jefwa, James H. P. Kahindi, Damase Khasa
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.ppat.1008986

Qualitative Differences Between the IFNα subtypes and IFNβ Influence Chronic Mucosal HIV-1 Pathogenesis
Cited by: 21
Author(s): Kejun Guo, Guannan Shen, Jon Kibbie, Tanía González, Stephanie M. Dillon, Harry A. Smith, Emily Cooper, Kerry J. Lavender, Kim J. Hasenkrug, Kathrin Sutter, Ulf Dittmer, Miranda Kroehl, Katerina Kechris, Cara C. Wilson, Mario L. Santiago
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pcbi.1009274

Validation and tuning of in situ transcriptomics image processing workflows with crowdsourced annotations
Cited by: 0
Author(s): Jenny M. Vo-Phamhi, Kevin A. Yamauchi, Rafael Gómez-Sjöberg
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pcbi.1009350

Evaluating the effectiveness of ensemble voting in improving the accuracy of consensus signals produced by various DTWA algorithms from step-current signals generated during nanopore sequencing
Cited by: 0
Author(s): M. R. Smith, Rachel Chan, Maaz Khurram, Paul M. Gordon
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.ppat.1008477

Immunosuppressive FK506 treatment leads to more frequent EBV-associated lymphoproliferative disease in humanized mice
Cited by: 15
Author(s): Nicole Caduff, Donal McHugh, Anita Murer, Patrick C. Rämer, Ana Raykova, Vanessa Landtwing, Lisa Rieble, Christian W. Keller, Michael Prummer, Laurent Hoffmann, Janice K. P. Lam, Aks Chiang, Friedrich Raulf, Tarik Azzi, Christoph Berger, Tina Rubic-Schneider, Elisabetta Traggiai, Jan D. Lünemann, Michael Kammüller, Christian Münz
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pcbi.1009346

The importance of non-pharmaceutical interventions during the COVID-19 vaccine rollout
Cited by: 48
Author(s): Nicolò Gozzi, Paolo Bajardi, Nicola Perra
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.ppat.1007926

Trickle infection and immunity to Trichuris muris
Cited by: 33
Author(s): Maya Glover, Stefano A. P. Colombo, David J. Thornton, Richard K. Grencis
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pcbi.1008988

Molecular dynamics shows complex interplay and long-range effects of post-translational modifications in yeast protein interactions
Cited by: 10
Author(s): Nikolina Šoštarić, Vera van Noort
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pcbi.1009300

MicrobeTrace: Retooling molecular epidemiology for rapid public health response
Cited by: 17
Author(s): Ellsworth Campbell, Anthony Boyles, Anupama Shankar, Jay Kim, S. P. Knyazev, Roxana Cintrón, William M. Switzer
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0231068

Effects of a blend of essential oils in milk replacer on performance, rumen fermentation, blood parameters, and health scores of dairy heifers
Cited by: 7
Author(s): Joana Palhares Campolina, Sandra Gesteira Coelho, Anna Luiza Belli, F. S. Machado, L. G. R. Pereira, T. R. Tomich, Wanessa A. Carvalho, Rodrigo Silva, Alessandra L. Voorsluys, David Vanni Jacob, M. M. Campos
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0242339

Shifts in methanogenic archaea communities and methane dynamics along a subtropical estuarine land use gradient
Cited by: 9
Author(s): Sebastian Euler, Luke C. Jeffrey, Damien T. Maher, Derek Mackenzie, Douglas R. Tait
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0248224

Real-life evaluation of histologic scores for Ulcerative Colitis in remission
Cited by: 8
Author(s): Christian Børde Arkteg, Sveinung Wergeland Sørbye, Lene Riis, Stig Manfred Dalen, Jon Florholmen, Rasmus Goll
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pcbi.1008473

A joint modeling approach for longitudinal microbiome data improves ability to detect microbiome associations with disease
Cited by: 7
Author(s): Pamela N. Luna, Jonathan M. Mansbach, Chad A. Shaw
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0254556

Simple mapping-based quantification of a mock microbial community using total RNA-seq data
Cited by: 4
Author(s): Shigeharu Moriya
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0252685

Expanded transcriptomic view of strawberry fruit ripening through meta-analysis
Cited by: 0
Author(s): Gibum Yi, Hosub Shin, Kyeonglim Min, Eun Jin Lee
Software Mentions: 5
Published: over 4 years ago