10.1371/journal.pone.0255313

Competing risk of mortality in association studies of non-fatal events
Cited by: 6
Author(s): Petra Bùžková
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0242396

Microbial population shift and metabolic characterization of silver diamine fluoride treatment failure on dental caries
Cited by: 8
Author(s): Benjamin C. Paul, Maria A. Sierra, Fangxi Xu, Yasmi O. Crystal, Xin Li, Deepak Saxena, Ryan Richard Ruff
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0229217

Testing gene-environment interactions for rare and/or common variants in sequencing association studies
Cited by: 4
Author(s): Zihan Zhao, Jianjun Zhang, Qiuying Sha, Hao Han
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0237621

Behavior-specific occurrence patterns of Pinyon Jays (Gymnorhinus cyanocephalus) in three Great Basin study areas and significance for pinyon-juniper woodland management
Cited by: 10
Author(s): John D. Boone, Chris Witt, Elisabeth M. Ammon
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0257520

Replicating prediction algorithms for hospitalization and corticosteroid use in patients with inflammatory bowel disease
Cited by: 3
Author(s): Ryan W. Gan, Diana Sun, Amanda R. Tatro, Shirley Cohen‐Mekelburg, Wyndy L. Wiitala, Ji Zhu, Akbar K. Waljee
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0230909

Variability of cost trajectories over the last year of life in patients with advanced breast cancer in the Netherlands
Cited by: 7
Author(s): P. Schneider, Xavier Pouwels, Valéria Lima Passos, Bram Ramaekers, S.M.E. Geurts, Khava I. E. Ibragimova, Maaike de Boer, Frans Erdkamp, B. Vriens, Agnès J. van de Wouw, Marien O den Boer, M.J.A.E. Pepels, Vivianne C. G. Tjan‐Heijnen, Manuela A. Joore
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pcbi.1008608

miRNA normalization enables joint analysis of several datasets to increase sensitivity and to reveal novel miRNAs differentially expressed in breast cancer
Cited by: 2
Author(s): Shay Ben-Elazar, Miriam Ragle Aure, Kristín Jónsdóttir, Suvi‐Katri Leivonen, Vessela N. Kristensen, E. A. M. Janssen, Kristine Kleivi Sahlberg, Ole Christian Lingjærde, Zohar Yakhini
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0245439

Impact of integrating objective structured clinical examination into academic student assessment: Large-scale experience in a French medical school
Cited by: 10
Author(s): Alexandre Matet, Ludovic Fournel, F. Gaillard, Laurence Amar, Jean‐Benoît Arlet, Stéphanie Baron, Anne‐Sophie Bats, Céline Buffel du Vaure, Caroline Charlier, Victoire de Lastours, Albert Faye, Eve Jablon, Natacha Kadlub, Julien Leguen, David Lebeaux, Alexandre Malmartel, Tristan Mirault, Benjamin Planquette, Alexis Régent, Jean-Laurent Thébault, Alexy Tran-Dinh, Alexandre Nuzzo, Guillaume Turc, Gérard Friedlander, Philippe Ruszniewski, Cécile Badoual, Brigitte Ranque, Mehdi Oualha, Marie Courbebaisse
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0246471

Strategies for retention of heterosexual men in HIV care in sub-Saharan Africa: A systematic review
Cited by: 14
Author(s): Sylvia Kusemererwa, Dickens Akena, Damalie Nakanjako, Joanita Kigozi, Regina Nanyunja, Mastula Nanfuka, Bennet Kizito, Joseph Mugisha Okello, Nelson K. Sewankambo
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0256563

Evidence for an increase in cannabis use in Iran – A systematic review and trend analysis
Cited by: 10
Author(s): Yasna Rostam–Abadi, Jaleh Gholami, Ma­soumeh Amin-Esmaeili, Shahab Baheshmat, Marziyeh Hamzehzadeh, Hossein Rafiemanesh, Morteza Nasserbakht, Leila Ghalichi, Anousheh Safarcherati, Farhad Taremian, Ramin Mojtabai, Afarin Rahimi‐Movaghar
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0244107

A new formulation of compartmental epidemic modelling for arbitrary distributions of incubation and removal times
Cited by: 2
Author(s): P. Hernández, Carlos Peña, Alberto Ramos, J.J. Gómez-Cadenas
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0242773

Coupling of autism genes to tissue-wide expression and dysfunction of synapse, calcium signalling and transcriptional regulation
Cited by: 13
Author(s): Jamie Reilly, Louise Gallagher, Geraldine Leader, Sanbing Shen
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0229772

Carnitine insufficiency is associated with fatigue during lenvatinib treatment in patients with hepatocellular carcinoma
Cited by: 13
Author(s): Hironao Okubo, Hitoshi Ando, Kei Ishizuka, Ryuta Kitagawa, Shoki Okubo, Hiroaki Saito, Shigehiro Kokubu, Akira Miyazaki, Kenichi Ikejima, Shuichiro Shiina, Akihito Nagahara
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0232683

Physics-informed neural networks for solving nonlinear diffusivity and Biot’s equations
Cited by: 67
Author(s): Teeratorn Kadeethum, Thomas Martini Jørgensen, Hamidreza M. Nick
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0242552

Development and evaluation of a novel music-based therapeutic device for upper extremity movement training: A pre-clinical, single-arm trial
Cited by: 6
Author(s): Nina Schaffert, Thenille Braun Janzen, Roy Ploigt, Sebastian Schlüter, Veronica Vuong, Michael H. Thaut
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0247495

Change detection of auditory tonal patterns defined by absolute versus relative pitch information. A combined behavioural and EEG study
Cited by: 3
Author(s): Nina Coy, M. K. M. Bader, Erich Schröger, Sabine Grimm
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0236298

An in vitro model of chronic wounding and its implication for age-related macular degeneration
Cited by: 1
Author(s): Lindsay J. Bailey-Steinitz, Ying-Hsuan Shih, Monte J. Radeke, Peter Coffey
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0231317

Predictive validity in middle childhood of short tests of early childhood development used in large scale studies compared to the Bayley-III, the Family Care Indicators, height-for-age, and stunting: A longitudinal study in Bogota, Colombia
Cited by: 17
Author(s): Marta Rubio‐Codina, Sally Grantham‐McGregor
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0247265

Probabilistic analysis of COVID-19 patients’ individual length of stay in Swiss intensive care units
Cited by: 5
Author(s): Alexander Henzi, Gian‐Reto Kleger, Matthias P. Hilty, Pedro David Wendel García, Johanna F. Ziegel
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0223992

To tweet or not to tweet, that is the question: A randomized trial of Twitter effects in medical education
Cited by: 10
Author(s): Lauren A. Maggio, Todd C. Leroux, Anthony R. Artino
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0238594

High accuracy gene expression profiling of sorted cell subpopulations from breast cancer PDX model tissue
Cited by: 1
Author(s): Warren Porter, Eileen Snowden, Friedrich Hahn, Mitchell Ferguson, Frances Tong, W. Shannon Dillmore, Rainer Blaesius
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0243966

Correlation between hospitalized patients’ demographics, symptoms, comorbidities, and COVID-19 pandemic in Bahia, Brazil
Cited by: 14
Author(s): Márcio C. F. Macedo, Isabelle Matos Pinheiro, Caio J. L. Carvalho, H Fraga, Isaac P. C. Araujo, Simone S. Montes, Otávio A. C. Araujo, Leonardo Santos de Brito Alves, Hugo Saba, Márcio Luís Valença Araújo, Ivonete T. L. Queiroz, Romilson Lopes Sampaio, Márcia São Pedro Leal Souza, Ana Claudia F. N. da Silva, Antonio Carlos Santana de Souza
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0229210

Scores for sepsis detection and risk stratification – construction of a novel score using a statistical approach and validation of RETTS
Cited by: 14
Author(s): Lisa Mellhammar, Adam Linder, Jonas Tverring, Bértil Christensson, John H. Boyd, Per Åkesson, Fredrik Kahn
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0232583

Image-quality metric system for color filter array evaluation
Cited by: 1
Author(s): Tae Wuk Bae
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0246661

Evaluating changes in the prevalence of female genital mutilation/cutting among 0-14 years old girls in Nigeria using data from multiple surveys: A novel Bayesian hierarchical spatio-temporal model
Cited by: 7
Author(s): Chibuzor Christopher Nnanatu, Glory Atilola, Paul Nzinga Komba, Lubanzadio Mavatikua, Zhuzhi Moore, Dennis Matanda, Otibho Obianwu, Ngianga‐Bakwin Kandala
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1008630

Rapid 3D phenotypic analysis of neurons and organoids using data-driven cell segmentation-free machine learning
Cited by: 11
Author(s): Philipp Mergenthaler, Santosh Hariharan, James M Pemberton, Corey Lourenco, Linda Z. Penn, David W. Andrews
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0243772

Phenotypical antimicrobial resistance data of clinical and non-clinical Escherichia coli from poultry in Germany between 2014 and 2017
Cited by: 8
Author(s): Octavio Mesa-Varona, Heike Kaspar, Mirjam Grobbel, Bernd‐Alois Tenhagen
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0253615

Electronic patient-reported outcome measures using mobile health technology in rheumatology: A scoping review
Cited by: 8
Author(s): Jaclyn Shelton, Sierra Casey, Nathan Puhl, Jeanette Buckingham, Elaine Yacyshyn
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0236836

Time-series cardiovascular risk factors and receipt of screening for breast, cervical, and colon cancer: The Guideline Advantage
Cited by: 2
Author(s): Aixia Guo, Bettina F. Drake, Yosef Khan, James R. Langabeer, Randi E. Foraker
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0231120

Orchard layout and plant traits influence fruit yield more strongly than pollinator behaviour and density in a dioecious crop
Cited by: 4
Author(s): Angela Peace, David E. Pattemore, Melissa Broussard, Dilini Fonseka, Nathan Tomer, Nilsa A. Bosque‐Pérez, David W. Crowder, Allison K. Shaw, Linley K. Jesson, Brad G. Howlett, Mateusz Jochym, Jing Li
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0224933

Qualification programmes for immigrant health professionals: A systematic review
Cited by: 10
Author(s): Sidra Khan‐Gökkaya, Sanna Higgen, Mike Mösko
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0247458

Network dynamics of momentary affect states and future course of psychopathology in adolescents
Cited by: 5
Author(s): Anna Kuranova, Johanna T. W. Wigman, Claudia Menne-Lothmann, Jeroen Decoster, Ruud van Winkel, Philippe Delespaul, Marjan Drukker, Marc De Hert, Cathérine Derom, Evert Thiery, Bart P. F. Rutten, Nele Jacobs, Jim van Os, Albertine J. Oldehinkel, Sanne H. Booij, Marieke Wichers
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0247873

Evaluation of counting methods for monitoring populations of a cryptic alpine passerine, the rock wren (Passeriformes, Acanthisittidae, Xenicus gilviventris)
Cited by: 3
Author(s): Joanne M. Monks, Colin F. J. O’Donnell, Terry Greene, Kerry A. Weston
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0226833

Effects of Allium hookeri on gut microbiome related to growth performance in young broiler chickens
Cited by: 15
Author(s): Sung-Hyen Lee, Sohyun Bang, Hyejeong Jang, Eun-Byeol Lee, Bong-Sang Kim, Seung-Hwan Kim, Sang-Hyun Kang, Kyung-Woo Lee, Dong-Wook Kim, Jung-Bong Kim, Jeong‐Sook Choe, Shin-Young Park, Hyun S. Lillehoj
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0256074

Experience and lessons learned from multi-modal internet-based recruitment of U.S. Vietnamese into research
Cited by: 10
Author(s): Milkie Vu, Victoria N. Huynh, Robert A. Bednarczyk, Cam Escoffery, Danny Ta, Tien Thi Kieu Nguyen, Carla J. Berg
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0243639

The hallmarks of childhood abuse and neglect: A systematic review
Cited by: 15
Author(s): Jason Lang, Daniel M. Kerr, Papoula Petri-Romão, Tracey McKee, Helen Smith, Naomi Wilson, Marianna Zavrou, Paul G. Shiels, Helen Minnis
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0226056

Activation of GPR56, a novel adhesion GPCR, is necessary for nuclear androgen receptor signaling in prostate cells
Cited by: 10
Author(s): Julie Pratibha Singh, Manisha Dagar, Gunjan Dagar, Sudhir Kumar, Sudhir Rawal, Ravi Datta Sharma, Rakesh K. Tyagi, Gargi Bagchi
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0248219

Individual differences in avoiding feelings of disgust: Development and construct validity of the disgust avoidance questionnaire
Cited by: 2
Author(s): Paula von Spreckelsen, Nienke C. Jonker, Jorien Vugteveen, Ineke Wessel, Klaske A. Glashouwer, Peter J. de Jong
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0243811

Sex differences in the development and expression of a preference for familiar vocal signals in songbirds
Cited by: 9
Author(s): Terushige Fujii, Maki Ikebuchi, Kazuo Okanoya
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0249423

Predicting student satisfaction of emergency remote learning in higher education during COVID-19 using machine learning techniques
Cited by: 52
Author(s): Indy Man Kit Ho, K.Y. Cheong, Anthony Weldon
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0242972

Genetic variability of bioactive compounds and selection for nutraceutical quality in kola [Cola nitida (Vent) Schott. and Endl.]
Cited by: 13
Author(s): Daniel Nyadanu, S. T. Lowor, Abraham Akpertey, Dèdéou Apocalypse Tchokponhoué, P. Pobee, Jerome Agbesi Dogbatse, Daniel Okyere, Frederick Amon-Armah, M. Brako-Marfo
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pntd.0007783

A peridomestic Aedes malayensis population in Singapore can transmit yellow fever virus
Cited by: 10
Author(s): Elliott F. Miot, Fabien Aubry, Stéphanie Dabo, Ian H. Mendenhall, Sébastien Marcombe, Cheong Huat Tan, Lee Ching Ng, Anna‐Bella Failloux, Julien Pompon, Paul T. Brey, Louis Lambrechts
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0236480

Effects of quality-based procedure hospital funding reform in Ontario, Canada: An interrupted time series study
Cited by: 3
Author(s): Alvin H. Li, Karen S. Palmer, Monica Taljaard, J. Michael Paterson, Adalsteinn D. Brown, Anjie Huang, Husayn Marani, Lauren Lapointe‐Shaw, Daniel Pincus, Marian S. Wettstein, Girish S. Kulkarni, David Wasserstein, Noah Ivers
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0231553

Elevation and latitude drives structure and tree species composition in Andean forests: Results from a large-scale plot network
Cited by: 47
Author(s): Agustina Malizia, Cecilia Blundo, Julieta Carilla, Oriana Osinaga Acosta, Francisco Cuesta, Álvaro Duque, Nikolay Aguirre, Zhofre Aguirre Mendoza, Michele Ataroff, Selene Báez, Marco Calderón-Loor, Leslie Cayola, Luis Cayuela, Sergio Javier Ceballos, Hugo Cedillo, W. Farfan Rios, Kenneth J. Feeley, Alfredo Fuentes, Luis E. Gámez, Ricardo Grau, Juergen Homeier, Oswaldo Jadán, Luis Daniel Llambí, María Isabel Loza Rivera, Manuel J. Macía, Yadvinder Malhi, Lucio R. Malizia, Manuel Peralvo, Esteban Pinto, Sebastián J. Tello, Miles R. Silman, Kenneth R. Young
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1009370

Hybrid seed incompatibility in Capsella is connected to chromatin condensation defects in the endosperm
Cited by: 13
Author(s): Katarzyna Dziasek, Lauriane Simon, Clément Lafon‐Placette, Benjamin Laenen, Cecilia Wärdig, Juan Santos‐González, Tanja Slotte, Claudia Köhler
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pgen.1009086

miRNA-mediated loss of m6A increases nascent translation in glioblastoma
Cited by: 20
Author(s): John P. Zepecki, David Karambizi, J. Eduardo Fajardo, Kristin M. Snyder, Charlotte Guetta-Terrier, Oliver Y. Tang, Jia-Shu Chen, Atom Sarkar, András Fiser, Steven Toms, Nikos Tapinos
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0253857

A systematic review assessing the quality of patient reported outcomes measures in dry eye diseases
Cited by: 7
Author(s): Alberto Recchioni, Olalekan Lee Aiyegbusi, Samantha Cruz-Rivera, Saaeha Rauz, Anita Slade
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1008681

The domesticated transposase ALP2 mediates formation of a novel Polycomb protein complex by direct interaction with MSI1, a core subunit of Polycomb Repressive Complex 2 (PRC2)
Cited by: 20
Author(s): Christos N. Velanis, Pumi Perera, Bennett Thomson, Erica de Leau, Shih Chieh Liang, Ben Hartwig, Alexander Förderer, Harry Thornton, Pedro Arêde, Jiawen Chen, Kimberly M. Webb, Serin Gümüs, Geert De Jaeger, Clinton A. Page, C. Nathan Hancock, Christos Spanos, Juri Rappsilber, Philipp Voigt, Franziska Turck, Frank Wellmer, Justin Goodrich
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0237087

Sequencing and assembly of the Egyptian buffalo genome
Cited by: 10
Author(s): Dina A. El-Khishin, Amr Ageez, Mohamed E. Saad, Amr Ibrahim, Moustafa Shokrof, L. Hassan, Mohamed Abouelhoda
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0256831

Glioblastoma signature in the DNA of blood-derived cells
Cited by: 2
Author(s): Siddharth Jain, Bijan Mazaheri, Netanel Raviv, Jehoshua Bruck
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pgen.1008462

High expression in maize pollen correlates with genetic contributions to pollen fitness as well as with coordinated transcription from neighboring transposable elements
Cited by: 25
Author(s): Cedar Warman, Kaushik Panda, Zuzana Vejlupkova, S. Hokin, Erica Unger-Wallace, Rex A. Cole, Antony M. Chettoor, Duo Jiang, Erik Vollbrecht, Evans Mulenga, R. Keith Slotkin, John E. Fowler
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0220683

On the use of in-silico simulations to support experimental design: A case study in microbial inactivation of foods
Cited by: 9
Author(s): Alberto Garre, Jose Lucas Peñalver-Soto, A. Esnoz, Asunción Iguaz, Pablo Salvador Fernández Escámez, José A. Egea
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0236418

Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
Cited by: 47
Author(s): Kurt G. Schilling, Justin A. Blaber, Colin B. Hansen, Leon Y. Cai, Baxter P. Rogers, Adam W. Anderson, Seth A. Smith, Praitayini Kanakaraj, Tonia S. Rex, Susan M. Resnick, Andrea T. Shafer, Laurie E. Cutting, Neil D. Woodward, David H. Zald, Bennett A. Landman
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0250518

LPCAT1-TERT fusions are uniquely recurrent in epithelioid trophoblastic tumors and positively regulate cell growth
Cited by: 4
Author(s): Gavin R. Oliver, Sofia Marcano-Bonilla, Jonathan Quist, Ezequiel J. Tolosa, Eriko Iguchi, Amy A. Swanson, Nicole L. Hoppman, Tanya L. Schwab, Ashley N. Sigafoos, Naresh Prodduturi, Jesse S. Voss, Shannon M. Knight, Jin Zhang, Numrah Fadra, Raúl Urrutia, Michael A. Zimmerman, Jan B. Egan, Anthony G. Bilyeu, Jin Jen, Ema Veras, Remaa Al-Safi, Matthew S. Block, Sarah Kerr, Martín E. Fernández-Zapico, John K. Schoolmeester, Eric W. Klee
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0247854

CoViD-19, learning from the past: A wavelet and cross-correlation analysis of the epidemic dynamics looking to emergency calls and Twitter trends in Italian Lombardy region
Cited by: 10
Author(s): Bruno Alessandro Rivieccio, Alessandra Micheletti, Manuel Maffeo, Matteo Zignani, Alessandro Comunian, Federica Nicolussi, Silvia Salini, Giancarlo Manzi, F. Auxilia, M. Giudici, Giovanni Naldi, Sabrina Gaito, Silvana Castaldi, Elia Biganzoli
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0232339

Seroprevalence of three paramyxoviruses; Hendra virus, Tioman virus, Cedar virus and a rhabdovirus, Australian bat lyssavirus, in a range expanding fruit bat, the Grey-headed flying fox (Pteropus poliocephalus)
Cited by: 19
Author(s): Wayne Boardman, Michelle L. Baker, Victoria Boyd, Gary Crameri, Grantley R. Peck, Terry Reardon, Ian Smith, Charles Caraguel, Thomas A. A. Prowse
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0241099

In-stream habitat availability for river dolphins in response to flow: Use of ecological integrity to manage river flows
Cited by: 5
Author(s): Shambhu Paudel, John L. Koprowski, Usha Thakuri, Ajay Karki
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0247444

Attention based GRU-LSTM for software defect prediction
Cited by: 12
Author(s): Hafiz Shahbaz Munir, Shengbing Ren, Mubashar Mustafa, Chaudry Naeem Siddique, Shazib Qayyum
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1008965

Replication of the Salmonella Genomic Island 1 (SGI1) triggered by helper IncC conjugative plasmids promotes incompatibility and plasmid loss
Cited by: 18
Author(s): Kévin Huguet, Nicolas Rivard, Daniel Garneau, Jason Palanee, Vincent Burrus
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pmed.1003074

Association of suicidal behavior with exposure to suicide and suicide attempt: A systematic review and multilevel meta-analysis
Cited by: 42
Author(s): Nicole T. M. Hill, Jo Robinson, Jane Pirkis, Karl Andriessen, Karolina Krysińska, Amber Payne, Alexandra Boland, Alison Clarke, Allison Milner, Katrina Witt, Stephan Krohn, Amit Lampit
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0228764

Identification of microRNAs involved in NOD-dependent induction of pro-inflammatory genes in pulmonary endothelial cells
Cited by: 4
Author(s): Ann-Kathrin Vlacil, Evelyn Vollmeister, Wilhelm Bertrams, Florian Schoesser, Raghav Oberoi, Jutta Schuett, Harald Schuett, Sonja Huehn, Katrin Bedenbender, Bernd Schmeck, Bernhard Schieffer, Karsten Grote
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0256286

Classifying California’s stream thermal regimes for cold-water conservation
Cited by: 12
Author(s): Ann Willis, Ryan A. Peek, Andrew L. Rypel
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0239863

Eco-evo-devo implications and archaeobiological perspectives of trait covariance in fruits of wild and domesticated grapevines
Cited by: 13
Author(s): Vincent Bonhomme, Sandrine Picq, Sarah Ivorra, Allowen Evin, Thierry Pastor, Roberto Baciliéri, Thierry Lacombe, Isabel Figueiral, Jean‐Frédéric Terral, Laurent Bouby
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0244433

A sound coding strategy based on a temporal masking model for cochlear implants
Cited by: 6
Author(s): E Kludt, Waldo Nogueira, Thomas Lenarz, Andreas Buechner
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pgen.1008720

Eliciting priors and relaxing the single causal variant assumption in colocalisation analyses
Cited by: 144
Author(s): Chris Wallace
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0254398

Non-native plant removal and high rainfall years promote post-fire recovery of Artemisia californica in southern California sage scrub
Cited by: 5
Author(s): Diane M. Thomson, Wallace M. Meyer, Isobel F Whitcomb
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1009556

CRISPR/Cas9 modified An. gambiae carrying kdr mutation L1014F functionally validate its contribution in insecticide resistance and combined effect with metabolic enzymes
Cited by: 23
Author(s): Linda Grigoraki, Ruth Cowlishaw, Tony Nolan, Martin J. Donnelly, Gareth Lycett, Hilary Ranson
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0228964

Genetic characteristics of Jiaji Duck by whole genome re-sequencing
Cited by: 7
Author(s): Lihong Gu, Wang Feng, Zhemin Lin, Tieshan Xu, Dajie Lin, Manping Xing, Shuo Yang, Zhe Chao, Baoguo Ye, Licong Peng, Chunhui Hui, Lizhi Liu, Shuisheng Hou
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0232626

Elicitation with Bacillus QV15 reveals a pivotal role of F3H on flavonoid metabolism improving adaptation to biotic stress in blackberry
Cited by: 15
Author(s): Enrique Gutierrez‐Albanchez, Ana Gradillas, Antonia Garcı́a, Ana García‐Villaraco, Francisco Javier Gutiérrez-Mañero, Beatriz Ramos‐Solano
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0247060

Angiotensin-converting enzyme 2 (ACE2) expression increases with age in patients requiring mechanical ventilation
Cited by: 66
Author(s): Sam W. Baker, Shirley Kwok, Gerald J. Berry, Thomas J. Montine
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0234573

Under 10 mortality patterns, risk factors, and mechanisms in low resource settings of Eastern Uganda: An analysis of event history demographic and verbal social autopsy data
Cited by: 2
Author(s): Rornald Muhumuza Kananura, Tiziana Leone, Tryphena Nareeba, Dan Kajungu, Peter Waiswa, Arjan Gjonça
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1009684

An autoimmune disease risk variant: A trans master regulatory effect mediated by IRF1 under immune stimulation?
Cited by: 10
Author(s): Margot Brandt, Sarah Kim-Hellmuth, Marcello Ziosi, Alper Gokden, Aaron Wolman, Nora Lam, Yocelyn Recinos, Zharko Daniloski, John A. Morris, Veit Hornung, Johannes Schumacher, Tuuli Lappalainen
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0234431

Comparative analysis of viruses in four bee species collected from agricultural, urban, and natural landscapes
Cited by: 10
Author(s): Tuğçe Olgun, Sydney E. Everhart, Troy D. Anderson, Judy Wu‐Smart
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1009686

A ubiquitin-like protein encoded by the “noncoding” RNA TINCR promotes keratinocyte proliferation and wound healing
Cited by: 11
Author(s): Akihiro Nita, Akinobu Matsumoto, Ronghao Tang, Chisa Shiraishi, Kazuya Ichihara, Daisuke Saito, Mikita Suyama, Tomoharu Yasuda, Gaku Tsuji, Masutaka Furue, Bunpei Katayama, Toshiyuki Ozawa, Takaho Murata, Teruki Dainichi, Kenji Kabashima, Atsushi Hatano, Masaki Matsumoto, Keiichi I. Nakayama
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0241465

What triggers online help-seeking retransmission during the COVID-19 period? Empirical evidence from Chinese social media
Cited by: 26
Author(s): Chen Luo, Yuru Li, Anfan Chen, Yulong Tang
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0241536

Proportion of asymptomatic infection among COVID-19 positive persons and their transmission potential: A systematic review and meta-analysis
Cited by: 239
Author(s): Mercedes Yanes‐Lane, Nicholas Winters, Federica Fregonese, Mayara Lisboa Bastos, Sara Perlman‐Arrow, Jonathon R. Campbell, Dick Menzies
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0232699

Azolla filiculoides L. as a source of metal-tolerant microorganisms
Cited by: 22
Author(s): Artur Banach, Agnieszka Kuźniar, Jarosław Grządziel, Agnieszka Woliñska
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0253838

Factors driving the compositional diversity of Apis mellifera bee venom from a Corymbia calophylla (marri) ecosystem, Southwestern Australia
Cited by: 8
Author(s): Daniela Scaccabarozzi, Ken Dods, Thao T. Le, Joel Gummer, Michele Lussu, Lynne A. Milne, Tristan Campbell, Ben Pan Wafujian, Colin Priddis
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.ppat.1009079

Global discovery of human-infective RNA viruses: A modelling analysis
Cited by: 13
Author(s): Feifei Zhang, Margo Chase-Topping, Chuan‐Guo Guo, Bram A. D. van Bunnik, Liam Brierley, Mark Woolhouse
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pgen.1009687

Reduction of Derlin activity suppresses Notch-dependent tumours in the C. elegans germ line
Cited by: 2
Author(s): Ramya Singh, Ryan B Smit, Xin Wang, Chris Wang, Hilary Racher, Dave Hansen
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0244816

Objective Structured Assessment of Debriefing (OSAD) in simulation-based medical education: Translation and validation of the German version
Cited by: 6
Author(s): Sandra Abegglen, Andrea Krieg, Helen Eigenmann, Robert Greif
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0251027

Red List assessment of amphibian species of Ecuador: A multidimensional approach for their conservation
Cited by: 25
Author(s): H. Mauricio Ortega‐Andrade, Marina Rodes-Blanco, Diego F. Cisneros‐Heredia, Nereida Guerra Arévalo, Karima Gabriela López de Vargas-Machuca, Juan C. Sánchez-Nivicela, Diego Armijos-Ojeda, José F. Andrade, Carolina Reyes-Puig, Amanda Belén Quezada Riera, Paul Székely, Octavio R. Rojas-Soto, Diana Székely, Juan M. Guayasamín, Fausto Rodrigo Siavichay Pesántez, Luís Amador, Raquel Betancourt, Salomón M. Ramírez-Jaramillo, Bruno Timbe-Borja, Miguel Gómez Laporta, Juan Fernando Webster Bernal, Luis Alfredo Oyagata Cachimuel, Daniel Chávez Jácome, Valentina Posse, Carlos Valle-Piñuela, Daniel Padilla Jiménez, Juan Pablo Reyes-Puig, Andrea Terán-Valdéz, Luis A. Coloma, Ma. Beatriz Pérez Lara, Sofía Carvajal-Endara, Miguel A. Urgilés, Mario H. Yánez-Muñoz
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0229408

An adjustable algal chloroplast plug-and-play model for genome-scale metabolic models
Cited by: 5
Author(s): Gunvor Røkke, Martin F. Hohmann‐Marriott, Eivind Almaas
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0227113

Indicators to distinguish symptom accentuators from symptom producers in individuals with a diagnosed adjustment disorder: A pilot study on inconsistency subtypes using SIMS and MMPI-2-RF
Cited by: 23
Author(s): Cristina Mazza, Graziella Orrù, Franco Burla, Merylin Monaro, Stefano Ferracuti, Marco Colasanti, Paolo Roma
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0250963

The implementation of random survival forests in conflict management data: An examination of power sharing and third party mediation in post-conflict countries
Cited by: 2
Author(s): Andrew Whetten, John R. Stevens, Damon M. Cann
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0243939

Feasibility of non-contact cardiorespiratory monitoring using impulse-radio ultra-wideband radar in the neonatal intensive care unit
Cited by: 13
Author(s): Won Hyuk Lee, Yong-Gu Lee, Jae Yoon Na, Seung Hyun Kim, Hyun Ju Lee, Young‐Hyo Lim, Seok Hyun Cho, Sung Ho Cho
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pmed.1003436

Induction of labour at 41 weeks or expectant management until 42 weeks: A systematic review and an individual participant data meta-analysis of randomised trials
Cited by: 23
Author(s): Mårten Alkmark, Judit K. J. Keulen, Joep C. Kortekaas, Christina Bergh, Jeroen van Dillen, Ruben G. Duijnhoven, Henrik Hagberg, Ben Willem J. Mol, Mattias Molin, Joris A. M. van der Post, Sissel Saltvedt, Anna‐Karin Wikström, Ulla‐Britt Wennerholm, Esteriek de Miranda
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0243627

Factors mediating the pressor response to isometric muscle contraction: An experimental study in healthy volunteers during lower body negative pressure
Cited by: 2
Author(s): Niels A. Stens, Jonny Hisdal, Espen F. Bakke, Navjyot Kaur, Archana Sharma, Einar Stranden, Dick H. J. Thijssen, Lars Øivind Høiseth
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0243336

Bioinformatic analysis linking genomic defects to chemosensitivity and mechanism of action
Cited by: 0
Author(s): David G. Covell
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pntd.0009139

The influence of roads on the fine-scale population genetic structure of the dengue vector Aedes aegypti (Linnaeus)
Cited by: 10
Author(s): Maria Angenica F. Regilme, Thaddeus M. Carvajal, Ann‐Christin Honnen, Divina Amalin, Kozo Watanabe
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1008637

Transcriptional regulation of genes bearing intronic heterochromatin in the rice genome
Cited by: 23
Author(s): Nino A. Espinas, Le Ngoc Tu, Leonardo Furci, Yasuka Shimajiri, Yoshiko Harukawa, Saori Miura, Shohei Takuno, Hidetoshi Saze
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1009003

Serotonergic modulation of visual neurons in Drosophila melanogaster
Cited by: 11
Author(s): Maureen M. Sampson, Katherine M. Myers Gschweng, Ben J. Hardcastle, Shivan L. Bonanno, Tyler R. Sizemore, Rebecca C. Arnold, Fuying Gao, Andrew M. Dacks, Mark A. Frye, David E. Krantz
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0254444

Using Assessment Design Decision Framework in understanding the impact of rapid transition to remote education on student assessment in health-related colleges: A qualitative study
Cited by: 8
Author(s): Myriam Jaam, Zachariah Nazar, Daniel Rainkie, Diana Alsayed Hassan, Farhat Hussain, Salah Kassab, Abdelali Agouni
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1009778

IGSF11 is required for pericentric heterochromatin dissociation during meiotic diplotene
Cited by: 5
Author(s): Bin Chen, Gengzhen Zhu, An Yan, Jing He, Yang Liu, Lin Li, Xuerui Yang, Dong Chen, Kehkooi Kee
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pmed.1003566

Dynamics of sputum conversion during effective tuberculosis treatment: A systematic review and meta-analysis
Cited by: 9
Author(s): Claire Calderwood, James P. Wilson, Katherine Fielding, Rebecca Harris, Aaron S Karat, Raoul Mansukhani, Jane Falconer, Malin Bergström, S.D. Johnson, Nicky McCreesh, Edward J M Monk, Jasantha Odayar, P. J. Scott, Sarah A. Stokes, Hannah Theodorou, David Moore
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0222271

ViraMiner: Deep learning on raw DNA sequences for identifying viral genomes in human samples
Cited by: 79
Author(s): Ardi Tampuu, Zurab Bzhalava, Joakim Dillner, Rául Vicente
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0240376

Artificial Intelligence in mental health and the biases of language based models
Cited by: 33
Author(s): Isabel Straw, Chris Callison-Burch
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.ppat.1008155

The alternative cap-binding complex is required for antiviral defense in vivo
Cited by: 18
Author(s): Anna Gebhardt, Valter Bergant, Daniel Schnepf, Markus Moser, Arno Meiler, Dieudonnée Togbe, Claire Mackowiak, Line S. Reinert, Søren R. Paludan, Bernhard Ryffel, Alexey Stukalov, Peter Staeheli, Andreas Pichlmair
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.ppat.1007948

The fitness landscape of the African Salmonella Typhimurium ST313 strain D23580 reveals unique properties of the pBT1 plasmid
Cited by: 19
Author(s): Rocı́o Canals, Roy R. Chaudhuri, Rebecca E. Steiner, Siân V. Owen, Natalia Quinones-Olvera, Michael A. Gordon, Michael Baym, Michael Ibba, Jay C. D. Hinton
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pgen.1009215

Bud23 promotes the final disassembly of the small subunit Processome in Saccharomyces cerevisiae
Cited by: 12
Author(s): Joshua J. Black, Richa Sardana, Ezzeddine W. Elmir, Arlen Johnson
Software Mentions: 3
Published: almost 6 years ago