10.1371/journal.pone.0249951

Development and validation of a set of novel and robust 4-lncRNA-based nomogram predicting prostate cancer survival by bioinformatics analysis
Cited by: 6
Author(s): Peng Zhang, Xiaodong Tan, Daoqiang Zhang, Qiyong Gong, Xuefeng Zhang
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0243639

The hallmarks of childhood abuse and neglect: A systematic review
Cited by: 15
Author(s): Jason Lang, Daniel M. Kerr, Papoula Petri-Romão, Tracey McKee, Helen Smith, Naomi Wilson, Marianna Zavrou, Paul G. Shiels, Helen Minnis
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pmed.1003498

Polygenic risk scores in cardiovascular risk prediction: A cohort study and modelling analyses
Cited by: 83
Author(s): Luanluan Sun, Lisa Pennells, Stephen Kaptoge, Christopher P. Nelson, Scott C. Ritchie, Gad Abraham, Matthew Arnold, Steven Bell, Thomas Bolton, Stephen Burgess, Frank Dudbridge, Qi Guo, Eleni Sofianopoulou, David P. Stevens, John R. Thompson, Adam S. Butterworth, Angela Wood, John Danesh, Nilesh J. Samani, Michael Inouye, Emanuele Di Angelantonio
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0247495

Change detection of auditory tonal patterns defined by absolute versus relative pitch information. A combined behavioural and EEG study
Cited by: 3
Author(s): Nina Coy, M. K. M. Bader, Erich Schröger, Sabine Grimm
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1009651

Functional and structural analyses of novel Smith-Kingsmore Syndrome-Associated MTOR variants reveal potential new mechanisms and predictors of pathogenicity
Cited by: 6
Author(s): Aaron D. Besterman, Thorsten Althoff, Peter Elfferich, Irma Gutierrez-Mejia, Joshua Sadik, Jonathan A. Bernstein, Yvette van Ierland, Anja A. Kattentidt-Mouravieva, Mark Nellist, Jeff Abramson, Julián A. Martínez-Agosto
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0257643

Geographical variation in demand, utilization, and outcomes of hospital services for COVID-19 in Brazil: A descriptive serial cross-sectional study
Cited by: 7
Author(s): Claudia Cristina de Aguiar Pereira, Mônica Martins, Sheyla Maria Lemos Lima, Carla Lourenço Tavares de Andrade, Fernando Ramalho Gameleira Soares, Margareth Crisóstomo Portela
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0224676

Molecular epidemiological characteristics of dengue virus carried by 34 patients in Guangzhou in 2018
Cited by: 2
Author(s): Feng Liao, Huini Chen, Jieliang Xie, Shaofeng Zhan, Pan Pan, Zizhao Lao, Yaohua Fan, L. C.-C. Lin, Yunfeng Lai, Shuangfeng Lin, Jianguo Wu, Xiaohong Liu, Geng Li
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0237136

Early head-up mobilisation versus standard care for patients with severe acquired brain injury: A systematic review with meta-analysis and Trial Sequential Analysis
Cited by: 7
Author(s): Christian Gunge Riberholt, Vibeke Wagner, Jane Lindschou, Christian Gluud, Jesper Mehlsen, Kirsten Møller
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0229772

Carnitine insufficiency is associated with fatigue during lenvatinib treatment in patients with hepatocellular carcinoma
Cited by: 13
Author(s): Hironao Okubo, Hitoshi Ando, Kei Ishizuka, Ryuta Kitagawa, Shoki Okubo, Hiroaki Saito, Shigehiro Kokubu, Akira Miyazaki, Kenichi Ikejima, Shuichiro Shiina, Akihito Nagahara
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pcbi.1007983

Task-evoked activity quenches neural correlations and variability across cortical areas
Cited by: 52
Author(s): Takuya Ito, Scott L. Brincat, Markus Siegel, Ravi D. Mill, Biyu J. He, Earl K. Miller, Horacio G. Rotstein, Michael W. Cole
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0239781

A theoretical morphological model for quantitative description of the three-dimensional floral morphology in water lily (Nymphaea)
Cited by: 1
Author(s): Shiryu Kirié, Hideo Iwasaki, Koji Noshita, Hiroyoshi Iwata
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0246099

Dataset search in biodiversity research: Do metadata in data repositories reflect scholarly information needs?
Cited by: 19
Author(s): Felicitas Löffler, Valentin Wesp, Birgitta König-Ries, Friederike Klan
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0239528

Regulatory and evolutionary adaptation of yeast to acute lethal ethanol stress
Cited by: 9
Author(s): Jiping Yang, Saeed Tavazoie
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0243966

Correlation between hospitalized patients’ demographics, symptoms, comorbidities, and COVID-19 pandemic in Bahia, Brazil
Cited by: 14
Author(s): Márcio C. F. Macedo, Isabelle Matos Pinheiro, Caio J. L. Carvalho, H Fraga, Isaac P. C. Araujo, Simone S. Montes, Otávio A. C. Araujo, Leonardo Santos de Brito Alves, Hugo Saba, Márcio Luís Valença Araújo, Ivonete T. L. Queiroz, Romilson Lopes Sampaio, Márcia São Pedro Leal Souza, Ana Claudia F. N. da Silva, Antonio Carlos Santana de Souza
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0253611

Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program
Cited by: 4
Author(s): Chloé Sarnowski, Han Chen, Mary L. Biggs, Sylvia Wassertheil‐Smoller, Jan Bressler, Marguerite R. Irvin, Kathleen A. Ryan, David Karasik, Donna K. Arnett, L. Adrienne Cupples, David W. Fardo, Stephanie M. Gogarten, Benjamin D. Heavner, Deepti Jain, Hyun Min Kang, Charles Kooperberg, Arch G. Mainous, Braxton D. Mitchell, Alanna C. Morrison, Jeffrey R. O’Connell, Bruce M. Psaty, Kenneth Rice, Albert V. Smith, Ramachandran S. Vasan, B. Gwen Windham, Douglas P. Kiel, Joanne M. Murabito, Kathryn L. Lunetta, TOPMed Longevity
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pntd.0009081

Potential impacts of climate change on geographical distribution of three primary vectors of African Trypanosomiasis in Tanzania’s Maasai Steppe: G. m. morsitans, G. pallidipes and G. swynnertoni
Cited by: 12
Author(s): Happiness J. Nnko, Paul Gwakisa, Anibariki Ngonyoka, Calvin Sindato, Anna B. Estes
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1009301

PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial
Cited by: 4
Author(s): Michael Pickles, Anne Cori, William J. M. Probert, Rafael Sauter, Robert Hinch, Sarah Fidler, Helen Ayles, Peter Böck, Deborah Donnell, Ethan Wilson, Estelle Piwowar‐Manning, Sian Floyd, Richard Hayes, Christophe Fraser, Hptn Study Team
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pcbi.1008198

A comparison of neuronal population dynamics measured with calcium imaging and electrophysiology
Cited by: 85
Author(s): Ziqiang Wei, Bei Jung Lin, Tsai Wen Chen, Kayvon Daie, Karel Svoboda, Shaul Druckmann
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0245685

Brain organoid formation on decellularized porcine brain ECM hydrogels
Cited by: 44
Author(s): Robin Simsa, Theresa S.P. Rothenbücher, Hakan Gürbüz, Nidal Ghosheh, Jenny Emnéus, Lachmi Jenndahl, David L. Kaplan, Niklas Bergh, Alberto Martínez Serrano, Per Fogelstrand
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0247265

Probabilistic analysis of COVID-19 patients’ individual length of stay in Swiss intensive care units
Cited by: 5
Author(s): Alexander Henzi, Gian‐Reto Kleger, Matthias P. Hilty, Pedro David Wendel García, Johanna F. Ziegel
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0245976

SLAM-based augmented reality for the assessment of short-term spatial memory. A comparative study of visual versus tactile stimuli
Cited by: 8
Author(s): Francisco Munoz-Montoya, M. Carmen Juan, Magdalena Méndez-López, Ramón Mollá, Francisco Abad, Camino Fidalgo
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0242063

Inventive nesting behaviour in the keyhole wasp Pachodynerus nasidens Latreille (Hymenoptera: Vespidae) in Australia, and the risk to aviation safety
Cited by: 3
Author(s): Alan House, Jackson G. Ring, Phillip P. Shaw
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0227379

Comparison of balance changes after inspiratory muscle or Otago exercise training
Cited by: 21
Author(s): Francesco Vincenzo Ferraro, James Gavin, Tom Wainwright, Alison McConnell
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pcbi.1008601

Estimating and interpreting secondary attack risk: Binomial considered biased
Cited by: 10
Author(s): Yushuf Sharker, Eben Kenah
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0242396

Microbial population shift and metabolic characterization of silver diamine fluoride treatment failure on dental caries
Cited by: 8
Author(s): Benjamin C. Paul, Maria A. Sierra, Fangxi Xu, Yasmi O. Crystal, Xin Li, Deepak Saxena, Ryan Richard Ruff
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1009008

Male-biased aganglionic megacolon in the TashT mouse model of Hirschsprung disease involves upregulation of p53 protein activity and Ddx3y gene expression
Cited by: 6
Author(s): Tatiana Cardinal, Karl-F. Bergeron, Rodolphe Soret, Ouliana Souchkova, Christophe Fauré, Amélina Guillon, Nicolas Pilon
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0248429

Hypomethylation mediates genetic association with the major histocompatibility complex genes in Sjögren’s syndrome
Cited by: 4
Author(s): Calvin Chi, Kimberly E. Taylor, Hong Quach, Diana Quach, Lindsey A. Criswell, Lisa F. Barcellos
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1009448

dGPredictor: Automated fragmentation method for metabolic reaction free energy prediction and de novo pathway design
Cited by: 4
Author(s): Lin Wang, Vikas Upadhyay, Costas D. Maranas
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0245465

Factors that determine dependence in daily activities: A cross-sectional study of family practice non-attenders from Slovenia
Cited by: 3
Author(s): Antonija Poplas Susič, Zalika Klemenc–Ketiš, Rok Blagus, Nina Ružić Gorenjec
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1009384

Characterization of the NiRAN domain from RNA-dependent RNA polymerase provides insights into a potential therapeutic target against SARS-CoV-2
Cited by: 15
Author(s): Abhisek Dwivedy, Richard Mariadasse, Mohammed Ahmad, Sanjoy Chakraborty, Deepsikha Kar, Satish Tiwari, Sankar Bhattacharyya, Sudipta Sonar, Shailendra Mani, Prafullakumar Tailor, Tanmay Majumdar, Jeyaraman Jeyakanthan, B.K. Biswal
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pgen.1009708

Ras/ERK and PI3K/AKT signaling differentially regulate oncogenic ERG mediated transcription in prostate cells
Cited by: 6
Author(s): Brady G. Strittmatter, Travis J. Jerde, Peter C. Hollenhorst
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0250444

Assessment of undergraduate student knowledge, attitude, and practices towards COVID-19 in Debre Berhan University, Ethiopia
Cited by: 25
Author(s): Yared Asmare Aynalem, Tadesse Yirga Akalu, Birhan Gebresellassie Gebregiorgis, Nigussie Tadesse Sharew, Hilina Ketema Assefa, Wondimeneh Shibabaw Shiferaw
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0230779

Characterization of subtypes and transmitted drug resistance strains of HIV among Beijing residents between 2001-2016
Cited by: 7
Author(s): Jingrong Ye, Mingqiang Hao, Hui Xing, Yuncong Wang, Juan Wang, Yi Feng, Ruolei Xin, Ji Zeng, Shuai Zhao, Yinxiao Hao, Jing Chen, Yuhua Ruan, Xue Li, Yiming Shao, Hongzhou Lu
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1009805

A broad analysis of splicing regulation in yeast using a large library of synthetic introns
Cited by: 11
Author(s): Dvir Schirman, Zohar Yakhini, Yitzhak Pilpel, Orna Dahan
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pcbi.1008249

PyOIF: Computational tool for modelling of multi-cell flows in complex geometries
Cited by: 14
Author(s): Iveta Jančigová, Kristína Kovalčíková, Rudolf Weeber, Ivan Cimrák
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0253385

Hyperspectral band selection and modeling of soil organic matter content in a forest using the Ranger algorithm
Cited by: 6
Author(s): Yuanyuan Shi, Junyu Zhao, Xianchong Song, Zuoyu Qin, Lichao Wu, Huili Wang, Jian Tang
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0248774

Antenatal corticosteroids for impending late preterm (34-36+6 weeks) deliveries—A systematic review and meta-analysis of RCTs
Cited by: 22
Author(s): Mangesh Deshmukh, Sanjay Patole
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0231867

Characterizing rhizome bud dormancy in Polygonatum kingianum: Development of novel chill models and determination of dormancy release mechanisms by weighted correlation network analysis
Cited by: 4
Author(s): Yue Wang, Donovan Bailey, Shikai Yin, Xin Dong
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0229210

Scores for sepsis detection and risk stratification – construction of a novel score using a statistical approach and validation of RETTS
Cited by: 14
Author(s): Lisa Mellhammar, Adam Linder, Jonas Tverring, Bértil Christensson, John H. Boyd, Per Åkesson, Fredrik Kahn
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0248990

Smoking prevalence, core/periphery network positions, and peer influence: Findings from five datasets on US adolescents and young adults
Cited by: 0
Author(s): Cheng Wang
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0244071

A class for itself? On the worldviews of the new tech elite
Cited by: 6
Author(s): Hilke Brockmann, Wiebke Drews, John Torpey
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pgen.1008861

Adaptive evolution among cytoplasmic piRNA proteins leads to decreased genomic auto-immunity
Cited by: 12
Author(s): Luyang Wang, Daniel A. Barbash, Erin S. Kelleher
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1008387

AMPK regulates ESCRT-dependent microautophagy of proteasomes concomitant with proteasome storage granule assembly during glucose starvation
Cited by: 19
Author(s): Jianhui Li, Michal Breker, Morven Graham, Maya Schuldiner, Mark Hochstrasser
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0255602

A comparison of comorbidity measures for predicting mortality after elective hip and knee replacement: A cohort study of data from the National Joint Registry in England and Wales
Cited by: 3
Author(s): Chris Penfold, Michael R Whitehouse, Ashley W Blom, Andrew Judge, J. Mark Wilkinson, Adrian Sayers
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0257874

A systematic review and meta-analysis of the associations between interparental and sibling relationships: Positive or negative?
Cited by: 4
Author(s): Martina Zemp, Amos-Silvio Friedrich, Jessica Schirl, Slava Dantchev, Martin Voracek, Ulrich S. Tran
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pcbi.1008379

Inferring latent temporal progression and regulatory networks from cross-sectional transcriptomic data of cancer samples
Cited by: 12
Author(s): Xiaoqiang Sun, Ji Zhang, Qing Nie
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0241754

Emergence of a novel chikungunya virus strain bearing the E1:V80A substitution, out of the Mombasa, Kenya 2017-2018 outbreak
Cited by: 9
Author(s): Fredrick Eyase, Solomon Langat, Irina Maljkovic Berry, Francis Mulwa, Albert Nyunja, James Mu, Samuel Owaka, Samson Limbaso, Victor Ofula, Hellen Koka, Edith Koskei, Joel Lutomiah, Richard G. Jarman, Rosemary Sang
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0257645

An approach to increase the power output of Karnafuli Hydroelectric Power Station: A step to sustainable development in Bangladesh’s energy sector
Cited by: 3
Author(s): Md. Farhad Hossain, Tahmidur Rahman, Abdullahil Mamun, Omar Bin Mannan, Md. Altaf‐Ul‐Amin
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0231317

Predictive validity in middle childhood of short tests of early childhood development used in large scale studies compared to the Bayley-III, the Family Care Indicators, height-for-age, and stunting: A longitudinal study in Bogota, Colombia
Cited by: 17
Author(s): Marta Rubio‐Codina, Sally Grantham‐McGregor
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0251989

Individual differences in ethics positions: The EPQ-5
Cited by: 6
Author(s): Ernest H. O’Boyle, Donelson R. Forsyth
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0250753

Automated analysis of bacterial flow cytometry data with FlowGateNIST
Cited by: 7
Author(s): David Ross
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pgen.1008673

Pericentromeric heterochromatin is hierarchically organized and spatially contacts H3K9me2 islands in euchromatin
Cited by: 30
Author(s): Yuh Chwen G. Lee, Yuki Ogiyama, Nuno M. C. Martins, Brian J. Beliveau, David Acevedo, Chao-ting Wu, Giacomo Cavalli, Gary H. Karpen
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0236836

Time-series cardiovascular risk factors and receipt of screening for breast, cervical, and colon cancer: The Guideline Advantage
Cited by: 2
Author(s): Aixia Guo, Bettina F. Drake, Yosef Khan, James R. Langabeer, Randi E. Foraker
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0229408

An adjustable algal chloroplast plug-and-play model for genome-scale metabolic models
Cited by: 5
Author(s): Gunvor Røkke, Martin F. Hohmann‐Marriott, Eivind Almaas
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1008510

STK-12 acts as a transcriptional brake to control the expression of cellulase-encoding genes in Neurospora crassa
Cited by: 17
Author(s): Liangcai Lin, Shanshan Wang, Xin Li, Qun He, J. Philipp Benz, Chaoguang Tian
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0227113

Indicators to distinguish symptom accentuators from symptom producers in individuals with a diagnosed adjustment disorder: A pilot study on inconsistency subtypes using SIMS and MMPI-2-RF
Cited by: 23
Author(s): Cristina Mazza, Graziella Orrù, Franco Burla, Merylin Monaro, Stefano Ferracuti, Marco Colasanti, Paolo Roma
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0246983

Who infects whom?—Reconstructing infection chains of Mycobacterium avium ssp. paratuberculosis in an endemically infected dairy herd by use of genomic data
Cited by: 9
Author(s): Annette Nigsch, Suelee Robbe‐Austerman, Tod Stuber, Paulina D. Pavinski Bitar, Yrjö T. Gröhn, Y.H. Schukken
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0256464

Risk factors for treatment failure in women with uncomplicated lower urinary tract infection
Cited by: 2
Author(s): Romain Martischang, Maciek Godycki-Ćwirko, Anna Kowalczyk, Katarzyna Kosiek, ‪Adi Turjeman‬‏, Tanya Babich, Shachaf Shiber, Leonard Leibovici, Elodie von Dach, Stéphan Juergen Harbarth, Angela Huttner
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pmed.1003396

Defining remission of type 2 diabetes in research studies: A systematic scoping review
Cited by: 20
Author(s): Mireille Captieux, Regina Prigge, Sarah Wild, Bruce Guthrie
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pmed.1003346

Occurrence and transmission potential of asymptomatic and presymptomatic SARS-CoV-2 infections: A living systematic review and meta-analysis
Cited by: 805
Author(s): D. Buitrago-Garcia, Dianne Egli-Gany, Michel Jacques Counotte, Stefanie Hossmann, Hira Imeri, Aziz Mert Ipekci, Georgia Salanti, Nicola Low
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pcbi.1008977

Swarm: A federated cloud framework for large-scale variant analysis
Cited by: 2
Author(s): Amir Bahmani, Kyle Ferriter, Vandhana Krishnan, Arash Alavi, Amir Alavi, Philip S. Tsao, M Snyder, Cuiping Pan
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0231724

Novel insights into serodiagnosis and epidemiology of Erysipelothrix rhusiopathiae, a newly recognized pathogen in muskoxen (Ovibos moschatus)
Cited by: 14
Author(s): Fabien Mavrot, Karin Orsel, Wendy Hutchins, Layne G. Adams, Kimberlee B. Beckmen, John E. Blake, Sylvia Checkley, Tracy Davison, Juliette Di Francesco, Brett Elkin, Lisa‐Marie Leclerc, Angela Schneider, Matilde Tomaselli, Susan Kutz
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pcbi.1008366

A Bayesian non-parametric mixed-effects model of microbial growth curves
Cited by: 8
Author(s): Peter D. Tonner, Cynthia L. Darnell, Francesca Bushell, Peter A. Lund, Amy K. Schmid, Scott C. Schmidler
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0222271

ViraMiner: Deep learning on raw DNA sequences for identifying viral genomes in human samples
Cited by: 79
Author(s): Ardi Tampuu, Zurab Bzhalava, Joakim Dillner, Rául Vicente
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0256336

Has resistance to chlorhexidine increased among clinically-relevant bacteria? A systematic review of time course and subpopulation data
Cited by: 13
Author(s): Stephen E. Buxser
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0223992

To tweet or not to tweet, that is the question: A randomized trial of Twitter effects in medical education
Cited by: 10
Author(s): Lauren A. Maggio, Todd C. Leroux, Anthony R. Artino
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0236298

An in vitro model of chronic wounding and its implication for age-related macular degeneration
Cited by: 1
Author(s): Lindsay J. Bailey-Steinitz, Ying-Hsuan Shih, Monte J. Radeke, Peter Coffey
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0228073

lillies: An R package for the estimation of excess Life Years Lost among patients with a given disease or condition
Cited by: 33
Author(s): Oleguer Plana‐Ripoll, Vladimir Canudas-Romo, Nanna Weye, Thomas Munk Laursen, John J. McGrath, Per Kragh Andersen
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0238873

Comparative transcriptome analysis reveals key genes potentially related to organic acid and sugar accumulation in loquat
Cited by: 6
Author(s): Jun‐Bo Yang, Jing Zhang, Xianqian Niu, Xuelian Zheng, Xu Chen, Guohua Zheng, Jincheng Wu
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0256563

Evidence for an increase in cannabis use in Iran – A systematic review and trend analysis
Cited by: 10
Author(s): Yasna Rostam–Abadi, Jaleh Gholami, Ma­soumeh Amin-Esmaeili, Shahab Baheshmat, Marziyeh Hamzehzadeh, Hossein Rafiemanesh, Morteza Nasserbakht, Leila Ghalichi, Anousheh Safarcherati, Farhad Taremian, Ramin Mojtabai, Afarin Rahimi‐Movaghar
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0246661

Evaluating changes in the prevalence of female genital mutilation/cutting among 0-14 years old girls in Nigeria using data from multiple surveys: A novel Bayesian hierarchical spatio-temporal model
Cited by: 7
Author(s): Chibuzor Christopher Nnanatu, Glory Atilola, Paul Nzinga Komba, Lubanzadio Mavatikua, Zhuzhi Moore, Dennis Matanda, Otibho Obianwu, Ngianga‐Bakwin Kandala
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1008749

Comprehensive analysis of cancer breakpoints reveals signatures of genetic and epigenetic contribution to cancer genome rearrangements
Cited by: 10
Author(s): Kseniia Cheloshkina, Maria Poptsova
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1008864

Using the antibody-antigen binding interface to train image-based deep neural networks for antibody-epitope classification
Cited by: 17
Author(s): Daniel R. Ripoll, Sidhartha Chaudhury, Anders Wallqvist
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0242552

Development and evaluation of a novel music-based therapeutic device for upper extremity movement training: A pre-clinical, single-arm trial
Cited by: 6
Author(s): Nina Schaffert, Thenille Braun Janzen, Roy Ploigt, Sebastian Schlüter, Veronica Vuong, Michael H. Thaut
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0251637

Spatial and temporal variation in the occurrence of bottlenose dolphins in the Chesapeake Bay, USA, using citizen science sighting data
Cited by: 2
Author(s): Lauren K. Rodriguez, Amber D. Fandel, Benjamin R. Colbert, Jamie C. Testa, Helen Bailey
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0243779

Integrating economic measures of adaptation effectiveness into climate change interventions: A case study of irrigation development in Mwea, Kenya
Cited by: 6
Author(s): Daiju Narita, Ichiro Sato, Daikichi Ogawada, Akiko Matsumura
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0244816

Objective Structured Assessment of Debriefing (OSAD) in simulation-based medical education: Translation and validation of the German version
Cited by: 6
Author(s): Sandra Abegglen, Andrea Krieg, Helen Eigenmann, Robert Greif
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pntd.0009795

Variants of MIRNA146A rs2910164 and MIRNA499 rs3746444 are associated with the development of cutaneous leishmaniasis caused by Leishmania guyanensis and with plasma chemokine IL-8
Cited by: 7
Author(s): Tirza Gabrielle Ramos de Mesquita, José do Espírito Santo, Thaís Carneiro de Lacerda, Krys Layane Guimarães Duarte Queiroz, Cláudio Marcello da Silveira Júnior, José Pereira de Moura Neto, Lissianne Augusta Matos Gomes, Mara Lúcia Gomes de Souza, Marcus Vinítius de Farias Guerra, Rajendranath Ramasawmy
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0239817

Dispositional cognitive effort investment and behavioral demand avoidance: Are they related?
Cited by: 10
Author(s): Alexander Strobel, Gesine Wieder, Philipp C. Paulus, Florian Ott, Sebastian Pannasch, Stefan J. Kiebel, Corinna Kührt
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0243431

Sex differences in chronic kidney disease awareness among US adults, 1999 to 2018
Cited by: 25
Author(s): Sebastian Hödlmoser, Wolfgang C. Winkelmayer, Jarcy Zee, Roberto Pecoits–Filho, Ronald L. Pisoni, Friedrich K. Port, Bruce M. Robinson, Robin Ristl, Simon Krenn, Amelie Kurnikowski, Michał Lewandowski, Allison Ton, Juan Jesús Carrero, Eva Schernhammer, Manfred Hecking
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1009343

BEEM-Static: Accurate inference of ecological interactions from cross-sectional microbiome data
Cited by: 3
Author(s): Chenhao Li, Tamar V. Av-Shalom, Jun Wei Gerald Tan, Junmei Samantha Kwah, Kern Rei Chng, Niranjan Nagarajan
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pgen.1008493

Linking high GC content to the repair of double strand breaks in prokaryotic genomes
Cited by: 38
Author(s): Jake L. Weissman, William F. Fagan, Philip L. F. Johnson
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0246718

The role of clustering algorithm-based big data processing in information economy development
Cited by: 2
Author(s): Hongyan Ma
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0252775

The role of state feelings of loneliness in the situational regulation of social affiliative behavior: Exploring the regulatory relations within a multilevel framework
Cited by: 5
Author(s): Andreas Reißmann, Ewelina Stollberg, Joachim Hauser, Ivo Kaunzinger, Klaus W. Lange
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0226418

The Intersection of Human Disturbance and Diel Activity, with Potential Consequences on Trophic Interactions
Cited by: 10
Author(s): Michael A. Patten, Jutta C. Burger, Milan Mitrovich
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0232753

A non-stationary Markov model for economic evaluation of grass pollen allergoid immunotherapy
Cited by: 3
Author(s): Massimo Bilancia, Giuseppe Pasculli, Danilo Di Bona
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0242302

Systematic review and meta-analysis of the prevalence of common respiratory viruses in children < 2 years with bronchiolitis in the pre-COVID-19 pandemic era
Cited by: 37
Author(s): Sébastien Kenmoe, Cyprien Kengne-Ndé, Jean Thierry Ebogo‐Belobo, Donatien Serge Mbaga, Abdou Fatawou Modiyinji, Richard Njouom
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0230663

Integrating questionnaire measures for transdiagnostic psychiatric phenotyping using word2vec
Cited by: 3
Author(s): Aarón Sonabend, Amelia M. Pellegrini, Stephanie Chan, Henry Phelps Brown, J. Niels Rosenquist, Pieter J. Vuijk, Alysa E. Doyle, Roy H. Perlis, Tianxi Cai
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pcbi.1007455

A computational study on the role of glutamate and NMDA receptors on cortical spreading depression using a multidomain electrodiffusion model
Cited by: 18
Author(s): Austin Tuttle, Jorge J. Riera, Yoichiro Mori
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0238588

Nonverbal communication in selfies posted on Instagram: Another look at the effect of gender on vertical camera angle
Cited by: 5
Author(s): Alessandro Soranzo, Nicola Bruno
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pcbi.1009146

OpenABM-Covid19—An agent-based model for non-pharmaceutical interventions against COVID-19 including contact tracing
Cited by: 94
Author(s): Robert Hinch, William J. M. Probert, Anel Nurtay, Michaela Kendall, Chris Wymant, Matthew Hall, Katrina A. Lythgoe, Ana Bulas Cruz, Lele Zhao, Andrea Stewart, Luca Ferretti, Daniel Montero, James R. Warren, Nicole Mather, Matthew Abueg, Neo Wu, Olivier Legat, Katie Bentley, Thomas Mead, Kelvin Van-Vuuren, Dylan Feldner-Busztin, Tommaso Ristori, Anthony Finkelstein, David Bonsall, Lucie Abeler-Dörner, Christophe Fraser
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0238700

Appropriate-for-gestational-age infants who exhibit reduced antenatal growth velocity display postnatal catch-up growth
Cited by: 11
Author(s): Emma Jane Mclaughlin, Richard Hiscock, A. Robinson, Lisa Hui, Stephen Tong, Kirsten M. Dane, Anna Middleton, Susan Walker, Teresa M. MacDonald
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0243020

Long-term assessment of ecosystem services at ecological restoration sites using Landsat time series
Cited by: 2
Author(s): Trinidad del Río-Mena, L. Willemen, Anton Vrieling, Andy Snoeys, Andrew Nelson
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0247854

CoViD-19, learning from the past: A wavelet and cross-correlation analysis of the epidemic dynamics looking to emergency calls and Twitter trends in Italian Lombardy region
Cited by: 10
Author(s): Bruno Alessandro Rivieccio, Alessandra Micheletti, Manuel Maffeo, Matteo Zignani, Alessandro Comunian, Federica Nicolussi, Silvia Salini, Giancarlo Manzi, F. Auxilia, M. Giudici, Giovanni Naldi, Sabrina Gaito, Silvana Castaldi, Elia Biganzoli
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1007485

Alterations of the interactome of Bcl-2 proteins in breast cancer at the transcriptional, mutational and structural level
Cited by: 38
Author(s): Simon Mathis Kønig, Vendela Rissler, Thilde Terkelsen, Matteo Lambrughi, Elena Papaleo
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0242265

Adaptive volumetric light and atmospheric scattering
Cited by: 0
Author(s): Shan Tan, Jianwei Zhang, Yi Lin, Hong Liu, Menglong Yang, Wenyi Ge
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pgen.1009811

A Bayesian network approach incorporating imputation of missing data enables exploratory analysis of complex causal biological relationships
Cited by: 10
Author(s): Richard Howey, Alexander D. Clark, Najib Naamane, Louise N. Reynard, Arthur G. Pratt, Heather J. Cordell
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pcbi.1009352

Episome partitioning and symmetric cell divisions: Quantifying the role of random events in the persistence of HPV infections
Cited by: 2
Author(s): Thomas Bénéteau, Christian Selinger, Mircea T. Sofonea, Samuel Alizon
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0255271

Prognostic value of high-sensitivity cardiac troponin I in heart failure patients with mid-range and reduced ejection fraction
Cited by: 2
Author(s): Petr Lokaj, Jindřich Špinar, Lenka Špinarová, Filip Málek, Ondřej Ludka, Jan Krejčí, Petr Ošťádal, Dagmar Vondráková, Karel Lábr, Monika Špinarová, Monika Pávková Goldbergová, Marie Miklíková, Kateřina Helánová, Ilona Pařenicová, Vladimír Jakubo, Klára Benešová, Roman Miklík, Jiří Jarkovský, Tomáš Ondrúš, Jiří Pařenica
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0234958

Structural and biochemical characterization of a novel thermophilic Coh01147 protease
Cited by: 9
Author(s): Hossein Tarrahimofrad, Amir Meimandipour, Sareh Arjmand, Mohammadtaghi Beigi Nassiri, Ehsan Jahangirian, Hossein Tavana, Javad Zamani, Somayyeh Rahimnahal, Saeed Aminzadeh
Software Mentions: 3
Published: over 6 years ago