10.1371/journal.pgen.1008324

The plant mobile domain proteins MAIN and MAIL1 interact with the phosphatase PP7L to regulate gene expression and silence transposable elements in Arabidopsis thaliana
Cited by: 12
Author(s): Mélody Nicolau, Nathalie Picault, Julie Descombin, Yasaman Jami‐Alahmadi, Suhua Feng, Etienne Bucher, Steven E. Jacobsen, Jean-Marc Deragon, James A. Wohlschlegel, Guillaume Moissiard
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0242035

Seed encrusting with salicylic acid: A novel approach to improve establishment of grass species in ecological restoration
Cited by: 5
Author(s): Simone Pedrini, Jason C. Stevens, Kingsley W. Dixon
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0248263

Informed consent rates for neonatal randomized controlled trials in low- and lower middle-income versus high-income countries: A systematic review
Cited by: 6
Author(s): Jacqueline Patterson, Stuti Pant, Denise F. Jones, Syed Taha, Michael Jones, Melissa Bauserman, Paolo Montaldo, Carl Bose, Sudhin Thayyil
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0240178

Occurrence of Brucella ceti in striped dolphins from Italian Seas
Cited by: 14
Author(s): Giuliano Garofolo, A. Petrella, Giuseppe Lucifora, Gabriella Di Francesco, Giovanni Di Guardo, Alessandra Pautasso, Barbara Iulini, Katia Varello, Federica Giorda, Maria Goria, Alessandro Dondo, Simona Zoppi, Cristina Esmeralda Di Francesco, Stefania Giglio, Furio Ferringo, Luigina Serrecchia, Mattia Anna Rita Ferrantino, Katiuscia Zilli, Anna Janowicz, Manuela Tittarelli, Walter Mignone, Cristina Casalone, Carla Grattarola
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0234104

Emojis influence autobiographical memory retrieval from reading words: An fMRI-based study
Cited by: 14
Author(s): Christos Chatzichristos, Manuel Morante, Nikolaos Andreadis, Eleftherios Kofidis, Yiannis Kopsinis, Sergios Theodoridis
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0247060

Angiotensin-converting enzyme 2 (ACE2) expression increases with age in patients requiring mechanical ventilation
Cited by: 66
Author(s): Sam W. Baker, Shirley Kwok, Gerald J. Berry, Thomas J. Montine
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0243171

Geographical and social isolation drive the evolution of Austronesian languages
Cited by: 0
Author(s): Cecilia Padilla‐Iglesias, Erik Gjesfjeld, Lucio Vinicius
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pntd.0008270

Impact of tiny targets on Glossina fuscipes quanzensis, the primary vector of human African trypanosomiasis in the Democratic Republic of the Congo
Cited by: 26
Author(s): Iñaki Tirados, Andrew Hope, Richard Selby, Fabrice Mpembelé, Erick Mwamba Miaka, Marleen Boelaert, Mike Lehane, Stephen J. Torr, Michelle C. Stanton
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0243639

The hallmarks of childhood abuse and neglect: A systematic review
Cited by: 15
Author(s): Jason Lang, Daniel M. Kerr, Papoula Petri-Romão, Tracey McKee, Helen Smith, Naomi Wilson, Marianna Zavrou, Paul G. Shiels, Helen Minnis
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pcbi.1009094

Topological data analysis distinguishes parameter regimes in the Anderson-Chaplain model of angiogenesis
Cited by: 12
Author(s): John T. Nardini, Bernadette J. Stolz, Kevin Flores, Heather A. Harrington, Helen M. Byrne
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0232846

Diversity in kinetics correlated with structure in nano body-stabilized LacY
Cited by: 3
Author(s): Atul Kumar Johri, J. Finer-Moore, И. Н. Смирнова, Vladimir N. Kasho, Els Pardon, Jan Steyaert, H. Ronald Kaback, Robert M. Stroud
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0226833

Effects of Allium hookeri on gut microbiome related to growth performance in young broiler chickens
Cited by: 15
Author(s): Sung-Hyen Lee, Sohyun Bang, Hyejeong Jang, Eun-Byeol Lee, Bong-Sang Kim, Seung-Hwan Kim, Sang-Hyun Kang, Kyung-Woo Lee, Dong-Wook Kim, Jung-Bong Kim, Jeong‐Sook Choe, Shin-Young Park, Hyun S. Lillehoj
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pgen.1009651

Functional and structural analyses of novel Smith-Kingsmore Syndrome-Associated MTOR variants reveal potential new mechanisms and predictors of pathogenicity
Cited by: 6
Author(s): Aaron D. Besterman, Thorsten Althoff, Peter Elfferich, Irma Gutierrez-Mejia, Joshua Sadik, Jonathan A. Bernstein, Yvette van Ierland, Anja A. Kattentidt-Mouravieva, Mark Nellist, Jeff Abramson, Julián A. Martínez-Agosto
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0229526

Micro-structure diffusion scalar measures from reduced MRI acquisitions
Cited by: 13
Author(s): Santiago Aja‐Fernández, Rodrigo de Luis‐García, Maryam Afzali, Malwina Molendowska, Tomasz Pieciak, Antonio Tristán‐Vega
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0251245

Gut microbiome differences among Mexican Americans with and without type 2 diabetes mellitus
Cited by: 6
Author(s): Amanda K. Kitten, Laurajo Ryan, Grace C. Lee, Belinda T. Flores, Kelly R. Reveles
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0230404

A 3K Axiom SNP array from a transcriptome-wide SNP resource sheds new light on the genetic diversity and structure of the iconic subtropical conifer tree Araucaria angustifolia (Bert.) Kuntze
Cited by: 7
Author(s): Pedro Italo T. Silva, Orzenil B. Silva‐Junior, Lucileide Vilela Resende, V. A. de Sousa, A. V. de Aguiar, Dário Grattapaglia
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1008852

Personalized computational model quantifies heterogeneity in postprandial responses to oral glucose challenge
Cited by: 9
Author(s): Balázs Erdős, Bart van Sloun, Michiel E. Adriaens, Shauna D. O’Donovan, Dominique Langin, Arne Astrup, Ellen E. Blaak, Ilja C. W. Arts, Natal A. W. van Riel
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0223341

Genome wide DNA methylation profiling identifies specific epigenetic features in high-risk cutaneous squamous cell carcinoma
Cited by: 29
Author(s): David Hervás‐Marín, Faatiemah Higgins, O. Sanmartín, José Antonio Löpez‐Guerrero, M. Carmen Bañó, J. Carlos Igual, Inma Quilis, Juan Sandoval
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0229467

Discovery of antitumor lectins from rainforest tree root transcriptomes
Cited by: 3
Author(s): Atip Lawanprasert, Caitlin A. Guinan, Erica A. Langford, Carly E. Hawkins, Janna N. Sloand, Howard W. Fescemyer, Matthew R. Aronson, Jacob A. Halle, James H. Marden, Scott H. Medina
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pgen.1009708

Ras/ERK and PI3K/AKT signaling differentially regulate oncogenic ERG mediated transcription in prostate cells
Cited by: 6
Author(s): Brady G. Strittmatter, Travis J. Jerde, Peter C. Hollenhorst
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1008960

Model guided trait-specific co-expression network estimation as a new perspective for identifying molecular interactions and pathways
Cited by: 1
Author(s): Juho A. J. Kontio, Tanja Pyhäjärvi, Mikko J. Sillanpää
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pgen.1009805

A broad analysis of splicing regulation in yeast using a large library of synthetic introns
Cited by: 11
Author(s): Dvir Schirman, Zohar Yakhini, Yitzhak Pilpel, Orna Dahan
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0242194

Identification of potential target genes and crucial pathways in small cell lung cancer based on bioinformatic strategy and human samples
Cited by: 6
Author(s): Xiuwen Chen, Li Wang, Xiaomin Su, Senyuan Luo, Xianbin Tang, Yugang Huang
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0251691

Implementation of GeneXpert MTB/Rif proficiency testing program: A Case of the Uganda national tuberculosis reference laboratory/supranational reference laboratory
Cited by: 5
Author(s): Joel Kabugo, Joanita Namutebi, Dennis Mujuni, Andrew Nsawotebba, George William Kasule, Kenneth Musisi, Edgar Kigozi, Nyombi Abdunoor, Pius Lutaaya, Fredrick Kangave, Moses Joloba
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0230909

Variability of cost trajectories over the last year of life in patients with advanced breast cancer in the Netherlands
Cited by: 7
Author(s): P. Schneider, Xavier Pouwels, Valéria Lima Passos, Bram Ramaekers, S.M.E. Geurts, Khava I. E. Ibragimova, Maaike de Boer, Frans Erdkamp, B. Vriens, Agnès J. van de Wouw, Marien O den Boer, M.J.A.E. Pepels, Vivianne C. G. Tjan‐Heijnen, Manuela A. Joore
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pntd.0008790

Effects of ‘The Vicious Worm’ educational software on Taenia solium knowledge among key pork supply chain workers in Zambia
Cited by: 2
Author(s): Victor Vaernewyck, Kabemba E. Mwape, Chishimba Mubanga, Brecht Devleesschauwer, Sarah Gabriël, Chiara Trevisan
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0227665

Determining hydrological flow paths to enhance restoration in impaired mangrove wetlands
Cited by: 17
Author(s): Rosela Pérez-Ceballos, Arturo Zaldívar-Jiménez, Julio Canales-Delgadillo, Haydée López-Adame, Jorge López‐Portillo, Martín Merino–Ibarra
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pmed.1003346

Occurrence and transmission potential of asymptomatic and presymptomatic SARS-CoV-2 infections: A living systematic review and meta-analysis
Cited by: 805
Author(s): D. Buitrago-Garcia, Dianne Egli-Gany, Michel Jacques Counotte, Stefanie Hossmann, Hira Imeri, Aziz Mert Ipekci, Georgia Salanti, Nicola Low
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pcbi.1009146

OpenABM-Covid19—An agent-based model for non-pharmaceutical interventions against COVID-19 including contact tracing
Cited by: 94
Author(s): Robert Hinch, William J. M. Probert, Anel Nurtay, Michaela Kendall, Chris Wymant, Matthew Hall, Katrina A. Lythgoe, Ana Bulas Cruz, Lele Zhao, Andrea Stewart, Luca Ferretti, Daniel Montero, James R. Warren, Nicole Mather, Matthew Abueg, Neo Wu, Olivier Legat, Katie Bentley, Thomas Mead, Kelvin Van-Vuuren, Dylan Feldner-Busztin, Tommaso Ristori, Anthony Finkelstein, David Bonsall, Lucie Abeler-Dörner, Christophe Fraser
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0244289

HeProMo: A decision support tool to estimate wood harvesting productivities
Cited by: 8
Author(s): Stefan Holm, Fritz Frutig, Renato Lemm, Oliver Thees, Janine Schweier
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0230405

Data-based analysis, modelling and forecasting of the COVID-19 outbreak
Cited by: 668
Author(s): Cleo Anastassopoulou, Lucía Russo, Athanasios Tsakris, Constantinos Siettos
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0238700

Appropriate-for-gestational-age infants who exhibit reduced antenatal growth velocity display postnatal catch-up growth
Cited by: 11
Author(s): Emma Jane Mclaughlin, Richard Hiscock, A. Robinson, Lisa Hui, Stephen Tong, Kirsten M. Dane, Anna Middleton, Susan Walker, Teresa M. MacDonald
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pcbi.1008304

PPM-Decay: A computational model of auditory prediction with memory decay
Cited by: 10
Author(s): Peter M. C. Harrison, Roberta Bianco, Maria Chait, Marcus T. Pearce
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0257052

Network assessment and modeling the management of an epidemic on a college campus with testing, contact tracing, and masking
Cited by: 2
Author(s): Gregg Hartvigsen
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0249560

Sexual inhibition and sexual excitation in a sample of Polish women
Cited by: 7
Author(s): Krzysztof Nowosielski, Jacek Kurpisz, Robert Kowalczyk
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0253985

No evidence of host-specific egg mimicry in Asian koels
Cited by: 2
Author(s): Mominul Islam Nahid, Frode Fossøy, Bård G. Stokke, Virginia E. Abernathy, Sajeda Begum, Naomi E. Langmore, Eivin Røskaft, Peter Sjolte Ranke
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0236480

Effects of quality-based procedure hospital funding reform in Ontario, Canada: An interrupted time series study
Cited by: 3
Author(s): Alvin H. Li, Karen S. Palmer, Monica Taljaard, J. Michael Paterson, Adalsteinn D. Brown, Anjie Huang, Husayn Marani, Lauren Lapointe‐Shaw, Daniel Pincus, Marian S. Wettstein, Girish S. Kulkarni, David Wasserstein, Noah Ivers
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0249313

Fire Acupuncture versus conventional acupuncture to treat spasticity after stroke: A systematic review and meta-analysis
Cited by: 10
Author(s): Xuan Qiu, Yaowen Gao, Zhaoxu Zhang, Sijia Cheng, Shuangmei Zhang
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0233221

Plastic sexual ornaments: Assessing temperature effects on color metrics in a color-changing reptile
Cited by: 11
Author(s): Braulio A. Assis, Benjamin J. M. Jarrett, Gabe Koscky, Tracy Langkilde, Julian D. Avery
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0249423

Predicting student satisfaction of emergency remote learning in higher education during COVID-19 using machine learning techniques
Cited by: 52
Author(s): Indy Man Kit Ho, K.Y. Cheong, Anthony Weldon
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pmed.1003498

Polygenic risk scores in cardiovascular risk prediction: A cohort study and modelling analyses
Cited by: 83
Author(s): Luanluan Sun, Lisa Pennells, Stephen Kaptoge, Christopher P. Nelson, Scott C. Ritchie, Gad Abraham, Matthew Arnold, Steven Bell, Thomas Bolton, Stephen Burgess, Frank Dudbridge, Qi Guo, Eleni Sofianopoulou, David P. Stevens, John R. Thompson, Adam S. Butterworth, Angela Wood, John Danesh, Nilesh J. Samani, Michael Inouye, Emanuele Di Angelantonio
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0250518

LPCAT1-TERT fusions are uniquely recurrent in epithelioid trophoblastic tumors and positively regulate cell growth
Cited by: 4
Author(s): Gavin R. Oliver, Sofia Marcano-Bonilla, Jonathan Quist, Ezequiel J. Tolosa, Eriko Iguchi, Amy A. Swanson, Nicole L. Hoppman, Tanya L. Schwab, Ashley N. Sigafoos, Naresh Prodduturi, Jesse S. Voss, Shannon M. Knight, Jin Zhang, Numrah Fadra, Raúl Urrutia, Michael A. Zimmerman, Jan B. Egan, Anthony G. Bilyeu, Jin Jen, Ema Veras, Remaa Al-Safi, Matthew S. Block, Sarah Kerr, Martín E. Fernández-Zapico, John K. Schoolmeester, Eric W. Klee
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0256831

Glioblastoma signature in the DNA of blood-derived cells
Cited by: 2
Author(s): Siddharth Jain, Bijan Mazaheri, Netanel Raviv, Jehoshua Bruck
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0242474

Exploring options for reprocessing of N95 Filtering Facepiece Respirators (N95-FFRs) amidst COVID-19 pandemic: A systematic review
Cited by: 19
Author(s): Diptanu Paul, Ayush Gupta, Anand Kumar Maurya
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0244836

Production, reproduction and some adaptation characteristics of Boran cattle breed under changing climate: A systematic review and meta-analysis
Cited by: 5
Author(s): Merga Bayssa, Sintayehu Yigrem, Simret Betsha, Adugna Tolera
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0233997

Where is your field going? A machine learning approach to study the relative motion of the domains of physics
Cited by: 8
Author(s): Andrea Palmucci, Hao Liao, Andrea Napoletano, Andrea Zaccaria
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1008266

A mesoscopic simulator to uncover heterogeneity and evolutionary dynamics in tumors
Cited by: 8
Author(s): Juan Jiménez-Sánchez, Álvaro Martínez-Rubio, Антон Попов, Julián Pérez-Beteta, Youness Azimzade, David Molina-García, Juan Belmonte-Beitia, Gabriel F. Calvo, Víctor M. Pérez‐García
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pcbi.1007822

Biophysically grounded mean-field models of neural populations under electrical stimulation
Cited by: 36
Author(s): Caglar Cakan, Klaus Obermayer
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1008322

Adaptive dating and fast proposals: Revisiting the phylogenetic relaxed clock model
Cited by: 44
Author(s): Jordan Douglas, Rong Zhang, Remco Bouckaert
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0242972

Genetic variability of bioactive compounds and selection for nutraceutical quality in kola [Cola nitida (Vent) Schott. and Endl.]
Cited by: 13
Author(s): Daniel Nyadanu, S. T. Lowor, Abraham Akpertey, Dèdéou Apocalypse Tchokponhoué, P. Pobee, Jerome Agbesi Dogbatse, Daniel Okyere, Frederick Amon-Armah, M. Brako-Marfo
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0228550

Phenotypic diversity of Methylobacterium associated with rice landraces in North-East India
Cited by: 5
Author(s): Pratibha Sanjenbam, Radhika Buddidathi, Radhika Venkatesan, P. V. Shivaprasad, Deepa Agashe
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1007829

Improving the coverage of credible sets in Bayesian genetic fine-mapping
Cited by: 30
Author(s): Anna Hutchinson, Hope Watson, Chris Wallace
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1008395

Bacteria use structural imperfect mimicry to hijack the host interactome
Cited by: 5
Author(s): Natalia Sánchez de Groot, M. C. Torrent
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0234431

Comparative analysis of viruses in four bee species collected from agricultural, urban, and natural landscapes
Cited by: 10
Author(s): Tuğçe Olgun, Sydney E. Everhart, Troy D. Anderson, Judy Wu‐Smart
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0255271

Prognostic value of high-sensitivity cardiac troponin I in heart failure patients with mid-range and reduced ejection fraction
Cited by: 2
Author(s): Petr Lokaj, Jindřich Špinar, Lenka Špinarová, Filip Málek, Ondřej Ludka, Jan Krejčí, Petr Ošťádal, Dagmar Vondráková, Karel Lábr, Monika Špinarová, Monika Pávková Goldbergová, Marie Miklíková, Kateřina Helánová, Ilona Pařenicová, Vladimír Jakubo, Klára Benešová, Roman Miklík, Jiří Jarkovský, Tomáš Ondrúš, Jiří Pařenica
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0247031

Endangered predators and endangered prey: Seasonal diet of Southern Resident killer whales
Cited by: 33
Author(s): M. Bradley Hanson, Candice K. Emmons, Michael J. Ford, Meredith V. Everett, Kim M. Parsons, Linda K. Park, Jennifer A. Hempelmann, Donald M. Van Doornik, Gregory S. Schorr, Jeffrey K Jacobsen, Mark F Sears, Maya S Sears, John G. Sneva, Robin W. Baird, Lynne Barrè
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0238871

Clarifying assumptions in age-period-cohort analyses and validating results
Cited by: 10
Author(s): Ryan K. Masters, Daniel A. Powers
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0228561

Completing Linnaeus’s inventory of the Swedish insect fauna: Only 5,000 species left?
Cited by: 22
Author(s): Fredrik Ronquist, Mattias Forshage, Sibylle Häggqvist, Dave Karlsson, Rasmus Hovmöller, Johannes Bergsten, Kevin C. Holston, Tom Britton, Johan Abenius, B. Andersson, Peter Neerup Buhl, Carl-Cedric Coulianos, Arne Fjellberg, Carl‐Axel Gertsson, Sven Hellqvist, Mathias Jaschhof, Jostein Kjærandsen, Seraina Klopfstein, Sverre Kobro, Andrew D. Liston, Rudolf Meier, Marc A. A. Pollet, Matthias Riedel, Jindřích Roháček, Meike M. Schuppenhauer, Julia Stigenberg, Ingemar Struwe, Taeger Andreas, Sven-Olof Ulefors, Oleksandr Varga, Phil Withers, Ulf Gärdenfors
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1009058

A network modelling approach to assess non-pharmaceutical disease controls in a worker population: An application to SARS-CoV-2
Cited by: 9
Author(s): Edward M. Hill, Benjamin D. Atkins, Matthew James Keeling, Louise Dyson, Michael J. Tildesley
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0243020

Long-term assessment of ecosystem services at ecological restoration sites using Landsat time series
Cited by: 2
Author(s): Trinidad del Río-Mena, L. Willemen, Anton Vrieling, Andy Snoeys, Andrew Nelson
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0235819

Pre-colonial Amerindian legacies in forest composition of southern Brazil
Cited by: 11
Author(s): Aline Pereira Cruz, Eduardo Luiz Hettwer Giehl, Carolina Levis, Juliana Salles Machado, Lucas Reis Bueno, Nivaldo Peroni
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0243485

Local hypergraph clustering using capacity releasing diffusion
Cited by: 4
Author(s): Rania Ibrahim, David F. Gleich
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pcbi.1009267

Unveiling functions of the visual cortex using task-specific deep neural networks
Cited by: 18
Author(s): Kshitij Dwivedi, Michael Bonner, Radoslaw Martin Cichy, Gemma Roig
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0226418

The Intersection of Human Disturbance and Diel Activity, with Potential Consequences on Trophic Interactions
Cited by: 10
Author(s): Michael A. Patten, Jutta C. Burger, Milan Mitrovich
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0250569

Profiles and outcomes in patients with COVID-19 admitted to wards of a French oncohematological hospital: A clustering approach
Cited by: 3
Author(s): Louise Bondeelle, Sylvie Chevret, S. Cassonnet, Stéphanie Harel, Blandine Denis, Nathalie De Castro, Anne Bergeron
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0231976

New insights in the allelopathic traits of different barley genotypes: Middle Eastern and Tibetan wild-relative accessions vs. cultivated modern barley
Cited by: 16
Author(s): Mauro Maver, Begoña Miras-Moreno, Luigi Lucini, Marco Trevisan, Youry Pii, Stefano Cesco, Tanja Mimmo
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0239276

Standardized metrics can reveal region-specific opportunities in community engagement to aid recruitment in HIV prevention trials
Cited by: 10
Author(s): Gail Broder, Jonathan Lucas, Jontraye Davis, Stephaun E Wallace, Nandisile Luthuli, Kagisho Baepanye, Rhonda White, Marcus Bolton, Cheryl Blanchette, Michele P. Andrasik
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pcbi.1008719

Mechanical coupling in the nitrogenase complex
Cited by: 6
Author(s): Qi Huang, Monika Tokmina‐Lukaszewska, Lewis E. Johnson, Hayden Kallas, Bojana Ginovska, John W. Peters, Lance C. Seefeldt, Brian Bothner, Simone Raugei
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0233890

Risk of eczema, wheezing and respiratory tract infections in the first year of life: A systematic review of vitamin D concentrations during pregnancy and at birth
Cited by: 7
Author(s): Muzaitul Akma Mustapa Kamal Basha, Hazreen Abdul Majid, Nuguelis Razali, Abqariyah Yahya
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pmed.1003027

Potential gains in life expectancy by attaining daily ambient fine particulate matter pollution standards in mainland China: A modeling study based on nationwide data
Cited by: 87
Author(s): Jinlei Qi, Zengliang Ruan, Zhengmin Qian, Peng Yin, Yin Yang, Bipin Kumar Acharya, Lijun Wang, Hualiang Lin
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0246718

The role of clustering algorithm-based big data processing in information economy development
Cited by: 2
Author(s): Hongyan Ma
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1008359

A first-takes-all model of centriole copy number control based on cartwheel elongation
Cited by: 1
Author(s): Marco António Dias Louro, Mónica Bettencourt-Dias, Jorge Carneiro
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0242302

Systematic review and meta-analysis of the prevalence of common respiratory viruses in children < 2 years with bronchiolitis in the pre-COVID-19 pandemic era
Cited by: 37
Author(s): Sébastien Kenmoe, Cyprien Kengne-Ndé, Jean Thierry Ebogo‐Belobo, Donatien Serge Mbaga, Abdou Fatawou Modiyinji, Richard Njouom
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pcbi.1008957

On the effect of phylogenetic correlations in coevolution-based contact prediction in proteins
Cited by: 15
Author(s): Edwin Rodríguez Horta, Martin Weigt
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1008909

Identification of long regulatory elements in the genome of Plasmodium falciparum and other eukaryotes
Cited by: 1
Author(s): Christophe Menichelli, Vincent Guitard, Rafael Miyazawa Martins, Sophie Lèbre, José-Juan Lopez-Rubio, Charles-Henri Lecellier, Laurent Bréhélin
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1007937

Cerebellar Golgi cell models predict dendritic processing and mechanisms of synaptic plasticity
Cited by: 13
Author(s): Stefano Masoli, Alessandra Ottaviani, Stefano Casali, Egidio D’Angelo
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pmed.1003396

Defining remission of type 2 diabetes in research studies: A systematic scoping review
Cited by: 20
Author(s): Mireille Captieux, Regina Prigge, Sarah Wild, Bruce Guthrie
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0234955

Estimating the prevalence and risk of COVID-19 among international travelers and evacuees of Wuhan through modeling and case reports
Cited by: 20
Author(s): George Luo, Michael L. McHenry, John J. Letterio
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0223294

Distinctive tasks of different cyanobacteria and associated bacteria in carbon as well as nitrogen fixation and cycling in a late stage Baltic Sea bloom
Cited by: 13
Author(s): Falk Eigemann, Angela Vogts, Maren Voß, Luca Zoccarato, Heide N. Schulz-Vogt
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1009044

TSCCA: A tensor sparse CCA method for detecting microRNA-gene patterns from multiple cancers
Cited by: 9
Author(s): Wenwen Min, Tsung-Hui Chang, Shihua Zhang, Xiang Wan
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pmed.1003369

Socioeconomic level and associations between heat exposure and all-cause and cause-specific hospitalization in 1,814 Brazilian cities: A nationwide case-crossover study
Cited by: 32
Author(s): Rongbin Xu, Qi Zhao, Micheline de Sousa Zanotti Stagliorio Coélho, Paulo Hilário Nascimento Saldiva, Michael J. Abramson, Shanshan Li, Hyewon Lee
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pcbi.1008646

PEtab—Interoperable specification of parameter estimation problems in systems biology
Cited by: 50
Author(s): Leonard Schmiester, Yannik Schälte, Frank Bergmann, Tacio Camba, Erika Dudkin, Janine Egert, Fabian Fröhlich, Lara Fuhrmann, Adrian L. Hauber, Svenja Kemmer, Polina Lakrisenko, Carolin Loos, Simon Merkt, Wolfgang G. Müller, Dilan Pathirana, Elba Raimúndez, Lukas Refisch, Marcus Rosenblatt, Paul Stapor, Philipp Städter, Dantong Wang, Franz-Georg Wieland, Julio R. Banga, Jens Timmer, Alejandro F. Villaverde, Sven Sahle, Clemens Kreutz, Jan Hasenauer, Daniel Weindl
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pcbi.1008190

Community-level impacts of spatial repellents for control of diseases vectored by Aedes aegypti mosquitoes
Cited by: 5
Author(s): Quirine A. ten Bosch, Joseph Wagman, Fanny Castro-Llanos, Nicole L. Achee, John P. Grieco, T. Alex Perkins
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0244110

Motion fluency effects on object preference is limited to learned context
Cited by: 0
Author(s): Jonathan Flavell, Bryony McKean
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pcbi.1008391

Using B cell receptor lineage structures to predict affinity
Cited by: 11
Author(s): D. Ralph, F. A. Matsen
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0238595

Shark discards in selective and mixed-species pelagic longline fisheries
Cited by: 7
Author(s): Gareth L. Jordaan, Jorge Santos, Johan C. Groeneveld
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0248219

Individual differences in avoiding feelings of disgust: Development and construct validity of the disgust avoidance questionnaire
Cited by: 2
Author(s): Paula von Spreckelsen, Nienke C. Jonker, Jorien Vugteveen, Ineke Wessel, Klaske A. Glashouwer, Peter J. de Jong
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1008730

DEXOM: Diversity-based enumeration of optimal context-specific metabolic networks
Cited by: 5
Author(s): Pablo Rodríguez-Mier, Nathalie Poupin, Carlo De Blasio, Laurent Le Cam, Fabien Jourdan
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0236393

Association between over-indebtedness and antidepressant use: A cross-sectional analysis
Cited by: 1
Author(s): Jacqueline Warth, Niklas Beckmann, Marie-Therese Puth, Judith Tillmann, Johannes Porz, Ulrike Zier, Klaus Weckbecker, Birgitta Weltermann, Eva Münster
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0233107

Reproducibility of individual effect sizes in meta-analyses in psychology
Cited by: 35
Author(s): Esther Maassen, Marcel A.L.M. van Assen, Michèle B. Nuijten, Anton Olsson-Collentine, Jelte M. Wicherts
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0241099

In-stream habitat availability for river dolphins in response to flow: Use of ecological integrity to manage river flows
Cited by: 5
Author(s): Shambhu Paudel, John L. Koprowski, Usha Thakuri, Ajay Karki
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pgen.1008387

AMPK regulates ESCRT-dependent microautophagy of proteasomes concomitant with proteasome storage granule assembly during glucose starvation
Cited by: 19
Author(s): Jianhui Li, Michal Breker, Morven Graham, Maya Schuldiner, Mark Hochstrasser
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pcbi.1009162

Detecting behavioural changes in human movement to inform the spatial scale of interventions against COVID-19
Cited by: 18
Author(s): Hamish Gibbs, Emily Nightingale, Yang Liu, James Cheshire, León Danon, Liam Smeeth, Carl A. B. Pearson, Chris Grundy, Adam J. Kucharski, Rosalind M Eggo
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0255184

Affective states in digital game-based learning: Thematic evolution and social network analysis
Cited by: 9
Author(s): Xieling Chen, Di Zou, Lucas Kohnke, Haoran Xie, Gary Cheng
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0249309

The male bias of a generically-intended masculine pronoun: Evidence from eye-tracking and sentence evaluation
Cited by: 5
Author(s): Theresa Redl, Stefan Frank, Peter de Swart, H. de Hoop
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0238873

Comparative transcriptome analysis reveals key genes potentially related to organic acid and sugar accumulation in loquat
Cited by: 6
Author(s): Jun‐Bo Yang, Jing Zhang, Xianqian Niu, Xuelian Zheng, Xu Chen, Guohua Zheng, Jincheng Wu
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1008503

Simple models including energy and spike constraints reproduce complex activity patterns and metabolic disruptions
Cited by: 8
Author(s): Tanguy Fardet, Anna Levina
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0226428

GLAMbox: A Python toolbox for investigating the association between gaze allocation and decision behaviour
Cited by: 7
Author(s): Felix Molter, Armin W. Thomas, Hauke R. Heekeren, Peter N. C. Mohr
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1007659

Achieving stable dynamics in neural circuits
Cited by: 14
Author(s): Leo Kozachkov, Mikael Lundqvist, Jean‐Jacques E. Slotine, Earl K. Miller
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1008174

Metabolic pathway inference using multi-label classification with rich pathway features
Cited by: 8
Author(s): Abdur Rahman M. A. Basher, Ryan J. McLaughlin, Steven J. Hallam
Software Mentions: 3
Published: about 5 years ago