10.1371/journal.pcbi.1008050

Cross-species regulatory sequence activity prediction
Cited by: 89
Author(s): David R. Kelley
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1009803

A biallelic SNIP1 Amish founder variant causes a recognizable neurodevelopmental disorder
Cited by: 4
Author(s): Zineb Ammous, Lettie E Rawlins, Hannah Jones, Joseph S Leslie, Olivia Wenger, Ethan M. Scott, Jim Deline, Tom Herr, R. J. Evans, Angela Scheid, Joanna Kennedy, Barry A. Chioza, Ryan M. Ames, Harold E. Cross, Erik G. Puffenberger, Lorna W. Harries, Emma L. Baple, Andrew H. Crosby
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pcbi.1008192

Nonlinear stimulus representations in neural circuits with approximate excitatory-inhibitory balance
Cited by: 17
Author(s): Cody Baker, Vicky Zhu, Robert Rosenbaum
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pcbi.1007721

A systematic pipeline for classifying bacterial operons reveals the evolutionary landscape of biofilm machineries
Cited by: 24
Author(s): Cedoljub Bundalovic-Torma, Gregory B. Whitfield, Lindsey S. Marmont, P. Lynne Howell, John Parkinson
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pcbi.1007659

Achieving stable dynamics in neural circuits
Cited by: 14
Author(s): Leo Kozachkov, Mikael Lundqvist, Jean‐Jacques E. Slotine, Earl K. Miller
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0244734

Multi-criteria suitability analysis for neglected and underutilised crop species in South Africa
Cited by: 13
Author(s): Hillary Mugiyo, Vimbayi G. P. Chimonyo, Mbulisi Sibanda, Richard Kunz, Luxon Nhamo, Cecelia R. Masemola, Caroline Dalin, Albert T. Modi, Tafadzwanashe Mabhaudhi
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1008927

Embedding optimization reveals long-lasting history dependence in neural spiking activity
Cited by: 6
Author(s): Lucas Rudelt, D Marx, Michael Wibral, Viola Priesemann
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0254943

The influence of LncRNA H19 polymorphic variants on susceptibility to cancer: A systematic review and updated meta-analysis of 28 case-control studies
Cited by: 2
Author(s): Kunpeng Wang, Zheng Zhu, Yiqiu Wang, Dayuan Zong, Peng Xue, Jingyu Gu, Da Yong Lu, Chuanquan Tu
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1009679

Integrative analysis of genomic variants reveals new associations of candidate haploinsufficient genes with congenital heart disease
Cited by: 16
Author(s): Enrique Audain, Anna Wilsdon, Jeroen Breckpot, Jose M. G. Izarzugaza, Tomas Fitzgerald, Anne‐Karin Kahlert, Alejandro Sifrim, Florian Wünnemann, Yasset Perez‐Riverol, Hashim Abdul‐Khaliq, Mads Bak, Anne S. Bassett, Woodrow Benson, Felix Berger, Ingo Daehnert, Koenraad Devriendt, Sven Dittrich, Piers E.F. Daubeney, Vidu Garg, Karl Hackmann, Kirstin Hoff, Philipp Hofmann, Gregor Dombrowsky, Thomas Pickardt, Ulrike Bauer, Bernard Keavney, Sabine Klaassen, Hans‐Heiner Kramer, Christian R. Marshall, Dianna M. Milewicz, Scott A. LeMaire, Joseph S. Coselli, Michael E. Mitchell, Aoy Tomita‐Mitchell, Siddharth K. Prakash, Karl Stamm, Alexandre F.R. Stewart, Candice K. Silversides, Reiner Siebert, Brigitte Stiller, Jill A. Rosenfeld, Inga Vater, Alex V. Postma, Almuth Caliebe, J. David Brook, Grégor Andelfinger, Matthew E. Hurles, Bernard Thienpont, Lars Allan Larsen, Marc‐Phillip Hitz
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0248592

An image segmentation technique with statistical strategies for pesticide efficacy assessment
Cited by: 1
Author(s): Steven Kim, Dong Sub Kim, Xiaoming Mo
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1008197

Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases
Cited by: 8
Author(s): Janani Durairaj, Elena Melillo, Harro J. Bouwmeester, Jules Beekwilder, Dick de Ridder, Aalt D. J. van Dijk
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1008730

DEXOM: Diversity-based enumeration of optimal context-specific metabolic networks
Cited by: 5
Author(s): Pablo Rodríguez-Mier, Nathalie Poupin, Carlo De Blasio, Laurent Le Cam, Fabien Jourdan
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1009761

The CovR regulatory network drives the evolution of Group B Streptococcus virulence
Cited by: 11
Author(s): Maria-Vittoria Mazzuoli, Maëlle Daunesse, Hugo Varet, Isabelle Rosinski‐Chupin, Rachel Legendre, Odile Sismeiro, Myriam Gominet, P.A. Kaminski, Philippe Glaser, Claudia Chica, Patrick Trieu-Cuot, Arnaud Firon
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0245687

The Epidemiology of first and second-line drug-resistance Mycobacterium tuberculosis complex common species: Evidence from selected TB treatment initiating centers in Ethiopia
Cited by: 11
Author(s): Biniyam Dagne, Kassu Desta, Rahel Fekade, Misikir Amare, Mekonnen Tadesse, Getu Diriba, Betselot Zerihun, Melak Getu, Waganeh Sinshaw, Getachew Seid, Dinka Fekadu Gamtesa, Gebeyehu Assefa, Ayinalem Alemu
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0243785

Systematic review and meta-analysis of late auditory evoked potentials as a candidate biomarker in the assessment of tinnitus
Cited by: 16
Author(s): Emilie Cardon, Iris Joossen, Hanne Vermeersch, Laure Jacquemin, Griet Mertens, Olivier M. Vanderveken, Vedat Topsakal, Paul Van de Heyning, Vincent Van Rompaey, Annick Gilles
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1008190

Community-level impacts of spatial repellents for control of diseases vectored by Aedes aegypti mosquitoes
Cited by: 5
Author(s): Quirine A. ten Bosch, Joseph Wagman, Fanny Castro-Llanos, Nicole L. Achee, John P. Grieco, T. Alex Perkins
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0237356

DESS deconstructed: Is EDTA solely responsible for protection of high molecular weight DNA in this common tissue preservative?
Cited by: 7
Author(s): Amy Sharpe, S. Barrios, Sarah Gayer, Elisha Allan-Perkins, David Stein, Hannah J Appiah-Madson, Rosalia Falco, Daniel L. Distel
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pgen.1008673

Pericentromeric heterochromatin is hierarchically organized and spatially contacts H3K9me2 islands in euchromatin
Cited by: 30
Author(s): Yuh Chwen G. Lee, Yuki Ogiyama, Nuno M. C. Martins, Brian J. Beliveau, David Acevedo, Chao-ting Wu, Giacomo Cavalli, Gary H. Karpen
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1009087

Quantitative analysis questions the role of MeCP2 as a global regulator of alternative splicing
Cited by: 9
Author(s): Kashyap Chhatbar, Justyna Cholewa-Waclaw, Ruth Shah, Adrian Bird, Guido Sanguinetti
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pcbi.1008646

PEtab—Interoperable specification of parameter estimation problems in systems biology
Cited by: 50
Author(s): Leonard Schmiester, Yannik Schälte, Frank Bergmann, Tacio Camba, Erika Dudkin, Janine Egert, Fabian Fröhlich, Lara Fuhrmann, Adrian L. Hauber, Svenja Kemmer, Polina Lakrisenko, Carolin Loos, Simon Merkt, Wolfgang G. Müller, Dilan Pathirana, Elba Raimúndez, Lukas Refisch, Marcus Rosenblatt, Paul Stapor, Philipp Städter, Dantong Wang, Franz-Georg Wieland, Julio R. Banga, Jens Timmer, Alejandro F. Villaverde, Sven Sahle, Clemens Kreutz, Jan Hasenauer, Daniel Weindl
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0236082

Microbial community dissimilarity for source tracking with application in forensic studies
Cited by: 8
Author(s): Kyle M. Carter, L. Meng, Qianwen Luo, Hongmei Jiang, Lingling An
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1009008

Male-biased aganglionic megacolon in the TashT mouse model of Hirschsprung disease involves upregulation of p53 protein activity and Ddx3y gene expression
Cited by: 6
Author(s): Tatiana Cardinal, Karl-F. Bergeron, Rodolphe Soret, Ouliana Souchkova, Christophe Fauré, Amélina Guillon, Nicolas Pilon
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pgen.1008802

A phenome-wide association study of 26 mendelian genes reveals phenotypic expressivity of common and rare variants within the general population
Cited by: 12
Author(s): Catherine Tcheandjieu, Matthew Aguirre, Stefan Gustafsson, Priyanka Saha, Praneetha Potiny, Melissa Haendel, Erik Ingelsson, Manuel A. Rivas, James R. Priest
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pgen.1008922

Unified inference of missense variant effects and gene constraints in the human genome
Cited by: 15
Author(s): Yi Huang
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1008591

The conserved transcriptional regulator CdnL is required for metabolic homeostasis and morphogenesis in Caulobacter
Cited by: 13
Author(s): Selamawit Abi Woldemeskel, Allison K. Daitch, Laura Álvarez, Gaël Panis, Rilee Zeinert, Diego González, Erika Smith, Justine Collier, Peter Chien, Felipe Cava, Patrick H. Viollier, Erin D. Goley
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0232774

The effectiveness of smoking cessation, alcohol reduction, diet and physical activity interventions in changing behaviours during pregnancy: A systematic review of systematic reviews
Cited by: 18
Author(s): Nicola Heslehurst, Louise Hayes, Dan Jones, James Newham, Joan Olajide, Louise A. McLeman, Catherine McParlin, Caroline De Brún, Liane B. Azevedo
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0233920

Smooth operator: Modifying the Anhøj rules to improve runs analysis in statistical process control
Cited by: 3
Author(s): Jacob Anhøj, Tore Wentzel‐Larsen
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1009805

A broad analysis of splicing regulation in yeast using a large library of synthetic introns
Cited by: 11
Author(s): Dvir Schirman, Zohar Yakhini, Yitzhak Pilpel, Orna Dahan
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0245026

Estimating pulse wave velocity from the radial pressure wave using machine learning algorithms
Cited by: 17
Author(s): Wen Jin, Philip Chowienczyk, Jordi Alastruey
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1007425

Computational design and interpretation of single-RNA translation experiments
Cited by: 12
Author(s): Luis U. Aguilera, William Raymond, Zachary Fox, Michael P. May, Elliot Djokic, Tatsuya Morisaki, Timothy J. Stasevich, Brian Munsky
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0253515

Risk of adverse events in gastrointestinal endoscopy: Zero-inflated Poisson regression mixture model for count data and multinomial logit model for the type of event
Cited by: 7
Author(s): Marco Gemma, Fulvia Pennoni, Roberta Tritto, Massimo Aglietta
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1007937

Cerebellar Golgi cell models predict dendritic processing and mechanisms of synaptic plasticity
Cited by: 13
Author(s): Stefano Masoli, Alessandra Ottaviani, Stefano Casali, Egidio D’Angelo
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pgen.1009182

Differential transcript usage in the Parkinson’s disease brain
Cited by: 12
Author(s): Fiona Dick, Gonzalo S. Nido, Guido Alves, Ole‐Bjørn Tysnes, Gry Hilde Nilsen, Christian Dölle, Charalampos Tzoulis
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pcbi.1008909

Identification of long regulatory elements in the genome of Plasmodium falciparum and other eukaryotes
Cited by: 1
Author(s): Christophe Menichelli, Vincent Guitard, Rafael Miyazawa Martins, Sophie Lèbre, José-Juan Lopez-Rubio, Charles-Henri Lecellier, Laurent Bréhélin
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0226224

A geographically weighted random forest approach for evaluate forest change drivers in the Northern Ecuadorian Amazon
Cited by: 19
Author(s): Fabián Santos, Valerie Graw, Santiago Bonilla
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0246753

The comfort in touch: Immediate and lasting effects of handholding on emotional pain
Cited by: 7
Author(s): Razia S. Sahi, Macrina C. Dieffenbach, Siyan Gan, Maya Lee, Laura I. Hazlett, Shannon Burns, Matthew D. Lieberman, Simone G. Shamay‐Tsoory, Naomi I. Eisenberger
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0251765

Targeting neovascularization and respiration of tumor grafts grown on chick embryo chorioallantoic membranes
Cited by: 5
Author(s): Hyrije Ademi, Dheeraj Shinde, Max Gassmann, Daniela Gerst, Hassan Chaachouay, Johannes Vogel, Thomas A. Gorr
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1008503

Simple models including energy and spike constraints reproduce complex activity patterns and metabolic disruptions
Cited by: 8
Author(s): Tanguy Fardet, Anna Levina
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pgen.1008894

AXR1 affects DNA methylation independently of its role in regulating meiotic crossover localization
Cited by: 5
Author(s): Nicolas Christophorou, Wenjing She, Jincheng Long, Aurélie Hurel, Sébastien Beaubiat, Yassir Idir, Marina Tagliaro-Jahns, Aurélie Chambon, Victor Solier, Daniel Vezon, Mathilde Grelon, Xiaoqi Feng, Nicolas Bouché, Christine Mézard
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0244860

Regional anesthesia educational material utilization varies by World Bank income category: A mobile health application data study
Cited by: 3
Author(s): Vanessa Moll, Edward R. Mariano, Jamie Kitzman, Vikas N O’Reilly-Shah, Craig S. Jabaley
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0248337

Extra base hits: Widespread empirical support for instantaneous multiple-nucleotide changes
Cited by: 12
Author(s): Alexander G Lucaci, Sadie Wisotsky, Stephen D Shank, Steven Weaver, Sergei L. Kosakovsky Pond
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1009651

Functional and structural analyses of novel Smith-Kingsmore Syndrome-Associated MTOR variants reveal potential new mechanisms and predictors of pathogenicity
Cited by: 6
Author(s): Aaron D. Besterman, Thorsten Althoff, Peter Elfferich, Irma Gutierrez-Mejia, Joshua Sadik, Jonathan A. Bernstein, Yvette van Ierland, Anja A. Kattentidt-Mouravieva, Mark Nellist, Jeff Abramson, Julián A. Martínez-Agosto
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1009058

A network modelling approach to assess non-pharmaceutical disease controls in a worker population: An application to SARS-CoV-2
Cited by: 9
Author(s): Edward M. Hill, Benjamin D. Atkins, Matthew James Keeling, Louise Dyson, Michael J. Tildesley
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1008957

On the effect of phylogenetic correlations in coevolution-based contact prediction in proteins
Cited by: 15
Author(s): Edwin Rodríguez Horta, Martin Weigt
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1008965

Replication of the Salmonella Genomic Island 1 (SGI1) triggered by helper IncC conjugative plasmids promotes incompatibility and plasmid loss
Cited by: 18
Author(s): Kévin Huguet, Nicolas Rivard, Daniel Garneau, Jason Palanee, Vincent Burrus
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pcbi.1009267

Unveiling functions of the visual cortex using task-specific deep neural networks
Cited by: 18
Author(s): Kshitij Dwivedi, Michael Bonner, Radoslaw Martin Cichy, Gemma Roig
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pcbi.1008304

PPM-Decay: A computational model of auditory prediction with memory decay
Cited by: 10
Author(s): Peter M. C. Harrison, Roberta Bianco, Maria Chait, Marcus T. Pearce
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0241376

Frequency distribution of journalistic attention for scientific studies and scientific sources: An input–output analysis
Cited by: 8
Author(s): Markus Lehmkuhl, Nikolai Promies
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pcbi.1008395

Bacteria use structural imperfect mimicry to hijack the host interactome
Cited by: 5
Author(s): Natalia Sánchez de Groot, M. C. Torrent
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pntd.0009795

Variants of MIRNA146A rs2910164 and MIRNA499 rs3746444 are associated with the development of cutaneous leishmaniasis caused by Leishmania guyanensis and with plasma chemokine IL-8
Cited by: 7
Author(s): Tirza Gabrielle Ramos de Mesquita, José do Espírito Santo, Thaís Carneiro de Lacerda, Krys Layane Guimarães Duarte Queiroz, Cláudio Marcello da Silveira Júnior, José Pereira de Moura Neto, Lissianne Augusta Matos Gomes, Mara Lúcia Gomes de Souza, Marcus Vinítius de Farias Guerra, Rajendranath Ramasawmy
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pgen.1009580

Genetics of white color and iridophoroma in “Lemon Frost” leopard geckos
Cited by: 10
Author(s): Longhua Guo, Joshua S. Bloom, Steve Sykes, Elaine Huang, Zain Kashif, Elise Pham, Katarina Ho, Ana Alcaraz, Xinshu Xiao, Sandra Duarte‐Vogel, Leonid Kruglyak
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0236958

Supply-side options to reduce land requirements of fully renewable electricity in Europe
Cited by: 15
Author(s): Tim Tröndle
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0239938

Severity of bovine tuberculosis is associated with innate immune-biased transcriptional signatures of whole blood in early weeks after experimental Mycobacterium bovis infection
Cited by: 6
Author(s): Jayne E Wiarda, Paola M. Boggiatto, Darrell O. Bayles, W. Ray Waters, Tyler C. Thacker, Mitchell V. Palmer
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0222432

The intermediate proteasome is constitutively expressed in pancreatic beta cells and upregulated by stimulatory, low concentrations of interleukin 1 β
Cited by: 13
Author(s): Muhammad Saad Khilji, Danielle Verstappen, Tina Dahlby, Michala Prause, Celina Pihl, Sophie Emilie Bresson, Tenna Holgersen Bryde, Phillip Alexander Keller Andersen, Kristian Klindt, Dušan Živković, Marie‐Pierre Bousquet, Björn Tyrberg, Thomas Mandrup‐Poulsen, Michał Marzec
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1009318

Ush regulates hemocyte-specific gene expression, fatty acid metabolism and cell cycle progression and cooperates with dNuRD to orchestrate hematopoiesis
Cited by: 10
Author(s): Jonathan Lenz, Robert Liefke, Julianne Funk, Samuel Shoup, Andrea Nist, Thorsten Stiewe, Robert A. Schulz, Yumiko Tokusumi, Lea Albert, Hartmann Raifer, Klaus Förstemann, Olalla Vázquez, Tsuyoshi Tokusumi, Nancy Fossett, Alexander Brehm
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1008801

Dynamic genetic architecture of yeast response to environmental perturbation shed light on origin of cryptic genetic variation
Cited by: 14
Author(s): Yanjun Zan, Örjan Carlborg
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0238372

Disadvantages in preparing and publishing scientific papers caused by the dominance of the English language in science: The case of Colombian researchers in biological sciences
Cited by: 131
Author(s): Valeria Ramírez‐Castañeda
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0242030

dagLogo: An R/Bioconductor package for identifying and visualizing differential amino acid group usage in proteomics data
Cited by: 10
Author(s): Jianhong Ou, Haibo Li, Niraj K. Nirala, Alexey Stukalov, Usha Acharya, Michael R. Green, Lihua Julie Zhu
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0246352

Mistreatment of newborns after childbirth in health facilities in Nepal: Results from a prospective cohort observational study
Cited by: 5
Author(s): K C Ashish, Mohammed Moinuddin, Mary V. Kinney, Emma Sacks, Rejina Gurung, Avinash K Sunny, Pratiksha Bhattarai, Srijana Sharma, Mats Målqvist
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1007829

Improving the coverage of credible sets in Bayesian genetic fine-mapping
Cited by: 30
Author(s): Anna Hutchinson, Hope Watson, Chris Wallace
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0251691

Implementation of GeneXpert MTB/Rif proficiency testing program: A Case of the Uganda national tuberculosis reference laboratory/supranational reference laboratory
Cited by: 5
Author(s): Joel Kabugo, Joanita Namutebi, Dennis Mujuni, Andrew Nsawotebba, George William Kasule, Kenneth Musisi, Edgar Kigozi, Nyombi Abdunoor, Pius Lutaaya, Fredrick Kangave, Moses Joloba
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0227507

Whole blood transcriptomic analysis of beef cattle at arrival identifies potential predictive molecules and mechanisms that indicate animals that naturally resist bovine respiratory disease
Cited by: 29
Author(s): Matthew A. Scott, Amelia R. Woolums, Cyprianna E. Swiderski, Andy D. Perkins, Bindu Nanduri, David R. Smith, Brandi B. Karisch, William B. Epperson, J. R. Blanton
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0255184

Affective states in digital game-based learning: Thematic evolution and social network analysis
Cited by: 9
Author(s): Xieling Chen, Di Zou, Lucas Kohnke, Haoran Xie, Gary Cheng
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1009556

CRISPR/Cas9 modified An. gambiae carrying kdr mutation L1014F functionally validate its contribution in insecticide resistance and combined effect with metabolic enzymes
Cited by: 23
Author(s): Linda Grigoraki, Ruth Cowlishaw, Tony Nolan, Martin J. Donnelly, Gareth Lycett, Hilary Ranson
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0234714

Prostatic hyperplasia: Vascularization, hemodynamic and hormonal analysis of dogs treated with finasteride or orchiectomy
Cited by: 4
Author(s): Daniel de Souza Ramos Angrimani, Maria Claudia Pereda Francischini, Maíra Morales Brito, Camila Infantosi Vannucchi
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1009370

Hybrid seed incompatibility in Capsella is connected to chromatin condensation defects in the endosperm
Cited by: 13
Author(s): Katarzyna Dziasek, Lauriane Simon, Clément Lafon‐Placette, Benjamin Laenen, Cecilia Wärdig, Juan Santos‐González, Tanja Slotte, Claudia Köhler
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0250444

Assessment of undergraduate student knowledge, attitude, and practices towards COVID-19 in Debre Berhan University, Ethiopia
Cited by: 25
Author(s): Yared Asmare Aynalem, Tadesse Yirga Akalu, Birhan Gebresellassie Gebregiorgis, Nigussie Tadesse Sharew, Hilina Ketema Assefa, Wondimeneh Shibabaw Shiferaw
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0228561

Completing Linnaeus’s inventory of the Swedish insect fauna: Only 5,000 species left?
Cited by: 22
Author(s): Fredrik Ronquist, Mattias Forshage, Sibylle Häggqvist, Dave Karlsson, Rasmus Hovmöller, Johannes Bergsten, Kevin C. Holston, Tom Britton, Johan Abenius, B. Andersson, Peter Neerup Buhl, Carl-Cedric Coulianos, Arne Fjellberg, Carl‐Axel Gertsson, Sven Hellqvist, Mathias Jaschhof, Jostein Kjærandsen, Seraina Klopfstein, Sverre Kobro, Andrew D. Liston, Rudolf Meier, Marc A. A. Pollet, Matthias Riedel, Jindřích Roháček, Meike M. Schuppenhauer, Julia Stigenberg, Ingemar Struwe, Taeger Andreas, Sven-Olof Ulefors, Oleksandr Varga, Phil Withers, Ulf Gärdenfors
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1009252

Genome-scale reconstruction of Gcn4/ATF4 networks driving a growth program
Cited by: 4
Author(s): Rajalakshmi Srinivasan, Adhish Walvekar, Zeenat Rashida, Aswin Sai Narain Seshasayee, Sunil Laxman
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1008266

A mesoscopic simulator to uncover heterogeneity and evolutionary dynamics in tumors
Cited by: 8
Author(s): Juan Jiménez-Sánchez, Álvaro Martínez-Rubio, Антон Попов, Julián Pérez-Beteta, Youness Azimzade, David Molina-García, Juan Belmonte-Beitia, Gabriel F. Calvo, Víctor M. Pérez‐García
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1007822

Biophysically grounded mean-field models of neural populations under electrical stimulation
Cited by: 36
Author(s): Caglar Cakan, Klaus Obermayer
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1009086

miRNA-mediated loss of m6A increases nascent translation in glioblastoma
Cited by: 20
Author(s): John P. Zepecki, David Karambizi, J. Eduardo Fajardo, Kristin M. Snyder, Charlotte Guetta-Terrier, Oliver Y. Tang, Jia-Shu Chen, Atom Sarkar, András Fiser, Steven Toms, Nikos Tapinos
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1008322

Adaptive dating and fast proposals: Revisiting the phylogenetic relaxed clock model
Cited by: 44
Author(s): Jordan Douglas, Rong Zhang, Remco Bouckaert
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0253182

Less need for differentiation? Intestinal length of reptiles as compared to mammals
Cited by: 4
Author(s): Monika I. Hoppe, Carlo Meloro, Mark S. Edwards, Daryl Codron, Marcus Clauss, María J. Duque-Correa
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1008720

Eliciting priors and relaxing the single causal variant assumption in colocalisation analyses
Cited by: 144
Author(s): Chris Wallace
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0221606

Predicting 30-day hospital readmissions using artificial neural networks with medical code embedding
Cited by: 24
Author(s): Wenshuo Liu, Cooper Stansbury, Karandeep Singh, Andrew M. Ryan, Devraj Sukul, Elham Mahmoudi, Akbar K. Waljee, Ji Zhu, Brahmajee K. Nallamothu
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1009687

Reduction of Derlin activity suppresses Notch-dependent tumours in the C. elegans germ line
Cited by: 2
Author(s): Ramya Singh, Ryan B Smit, Xin Wang, Chris Wang, Hilary Racher, Dave Hansen
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0244142

The three NADH dehydrogenases of Pseudomonas aeruginosa: Their roles in energy metabolism and links to virulence
Cited by: 8
Author(s): Teri N. Hreha, Sara Foreman, Ana E. Duran-Pinedo, Alexander Morris, Patricia Díaz‐Rodríguez, J. Andrew Jones, Kristina Ferrara, Anaïs Bourges, Lauren Rodriguez, Mattheos Koffas, Mariah S. Hahn, Alan R. Hauser, Blanca Barquera
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pgen.1008582

Roles of Candida albicans Mig1 and Mig2 in glucose repression, pathogenicity traits, and SNF1 essentiality
Cited by: 32
Author(s): Katherine Lagree, Carol A. Woolford, Manning Y. Huang, Gemma E. May, C. Joel McManus, Norma V. Solis, Scott G. Filler, Aaron P. Mitchell
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pgen.1008949

The Paramecium histone chaperone Spt16-1 is required for Pgm endonuclease function in programmed genome rearrangements
Cited by: 11
Author(s): Augustin de Vanssay, Amandine Touzeau, Olivier Arnaiz, Andrea Frapporti, Jamie Phipps, Sandra Duharcourt
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1008941

A point mutation decouples the lipid transfer activities of microsomal triglyceride transfer protein
Cited by: 16
Author(s): Meredith H. Wilson, Sujith Rajan, Aidan Danoff, Richard White, Monica R. Hensley, Vanessa H. Quinlivan, Rosario Recacha, James H. Thierer, Frederick J. Tan, Elisabeth M Busch-Nentwich, Lloyd W. Ruddock, M. Mahmood Hussain, Steven A. Farber
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0253985

No evidence of host-specific egg mimicry in Asian koels
Cited by: 2
Author(s): Mominul Islam Nahid, Frode Fossøy, Bård G. Stokke, Virginia E. Abernathy, Sajeda Begum, Naomi E. Langmore, Eivin Røskaft, Peter Sjolte Ranke
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0225980

Choosing important health outcomes for comparative effectiveness research: 5th annual update to a systematic review of core outcome sets for research
Cited by: 78
Author(s): Elizabeth Gargon, Sarah L Gorst, Paula Williamson
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0233997

Where is your field going? A machine learning approach to study the relative motion of the domains of physics
Cited by: 8
Author(s): Andrea Palmucci, Hao Liao, Andrea Napoletano, Andrea Zaccaria
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1009245

bsAS, an antisense long non-coding RNA, essential for correct wing development through regulation of blistered/DSRF isoform usage
Cited by: 5
Author(s): Sílvia Pérez-Lluch, Cecília C. Klein, Alessandra Breschi, Marina Ruiz-Romero, Amaya Abad, Emilio Palumbo, Lyazzat Bekish, Carme Arnan, Roderic Guigó
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0229334

Age-related modulations of alpha and gamma brain activities underlying anticipation and distraction
Cited by: 20
Author(s): Hesham A. ElShafei, Lesly Fornoni, Rémy Masson, Olivier Bertrand, Aurélie Bidet-Caulet
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0249313

Fire Acupuncture versus conventional acupuncture to treat spasticity after stroke: A systematic review and meta-analysis
Cited by: 10
Author(s): Xuan Qiu, Yaowen Gao, Zhaoxu Zhang, Sijia Cheng, Shuangmei Zhang
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0253859

Position effects of 22q13 rearrangements on candidate genes in Phelan-McDermid syndrome
Cited by: 8
Author(s): Sujata Srikanth, Lavanya Jain, Cinthya J. Zepeda-Mendoza, Lauren Cascio, Kelly A. Jones, Rini Pauly, Barb DuPont, Curtis Rogers, Sara M. Sarasua, Katy Phelan, Cynthia C. Morton, Luigi Boccuto
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1008719

Mechanical coupling in the nitrogenase complex
Cited by: 6
Author(s): Qi Huang, Monika Tokmina‐Lukaszewska, Lewis E. Johnson, Hayden Kallas, Bojana Ginovska, John W. Peters, Lance C. Seefeldt, Brian Bothner, Simone Raugei
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0249521

Effects of supplemental feeding on the fecal bacterial communities of Rocky Mountain elk in the Greater Yellowstone Ecosystem
Cited by: 9
Author(s): Claire E. Couch, Benjamin L. Wise, Brandon M. Scurlock, Jared D. Rogerson, Rebecca K. Fuda, Eric K. Cole, Kimberly E. Szcodronski, Adam J. Sepulveda, Patrick R. Hutchins, Paul C. Cross
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1009215

Bud23 promotes the final disassembly of the small subunit Processome in Saccharomyces cerevisiae
Cited by: 12
Author(s): Joshua J. Black, Richa Sardana, Ezzeddine W. Elmir, Arlen Johnson
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1008359

A first-takes-all model of centriole copy number control based on cartwheel elongation
Cited by: 1
Author(s): Marco António Dias Louro, Mónica Bettencourt-Dias, Jorge Carneiro
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0219832

The role of inoculum dispersal and plant species identity in the assembly of leaf endophytic fungal communities
Cited by: 18
Author(s): Kevin D. Ricks, Roger T. Koide
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0245220

Development of spontaneous vegetation on reclaimed land in Singapore measured by NDVI
Cited by: 6
Author(s): Leon Yan-Feng Gaw, Daniel R. Richards
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0224933

Qualification programmes for immigrant health professionals: A systematic review
Cited by: 10
Author(s): Sidra Khan‐Gökkaya, Sanna Higgen, Mike Mösko
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pcbi.1009044

TSCCA: A tensor sparse CCA method for detecting microRNA-gene patterns from multiple cancers
Cited by: 9
Author(s): Wenwen Min, Tsung-Hui Chang, Shihua Zhang, Xiang Wan
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1008637

Transcriptional regulation of genes bearing intronic heterochromatin in the rice genome
Cited by: 23
Author(s): Nino A. Espinas, Le Ngoc Tu, Leonardo Furci, Yasuka Shimajiri, Yoshiko Harukawa, Saori Miura, Shohei Takuno, Hidetoshi Saze
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pcbi.1007983

Task-evoked activity quenches neural correlations and variability across cortical areas
Cited by: 52
Author(s): Takuya Ito, Scott L. Brincat, Markus Siegel, Ravi D. Mill, Biyu J. He, Earl K. Miller, Horacio G. Rotstein, Michael W. Cole
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pcbi.1008391

Using B cell receptor lineage structures to predict affinity
Cited by: 11
Author(s): D. Ralph, F. A. Matsen
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0247966

Relationships between topographic factors, soil and plant communities in a dry Afromontane forest patches of Northwestern Ethiopia
Cited by: 12
Author(s): Liyew Birhanu, Tamrat Bekele, Binyam Tesfaw, Sebsebe Demissew
Software Mentions: 3
Published: over 5 years ago