Ecosyste.ms: Papers

10.1371/journal.pone.0241465

What triggers online help-seeking retransmission during the COVID-19 period? Empirical evidence from Chinese social media
Cited by: 26
Author(s): Chen Luo, Yuru Li, Anfan Chen, Yulong Tang
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pcbi.1008380

On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo
Cited by: 10
Author(s): Charles-Elie Rabier, Vincent Berry, Marnus Stoltz, João dos Santos, Wensheng Wang, Jean-Christophe Glaszmann, Fabio Pardi, Céline Scornavacca
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.pone.0239450

Integrative analysis of long non-coding RNA and mRNA in broilers with valgus-varus deformity
Cited by: 10
Author(s): Hehe Tang, Yaping Guo, Zhenzhen Zhang, Zhuanjian Li, Yanhua Zhang, Yuanfang Li, Xiangtao Kang, Ruili Han
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pcbi.1007845

PhANNs, a fast and accurate tool and web server to classify phage structural proteins
Cited by: 44
Author(s): Adrian Cantu, Peter Salamon, Victor Seguritan, Jackson Redfield, David Salamon, Robert A. Edwards, Anca M. Segall
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pcbi.1009448

dGPredictor: Automated fragmentation method for metabolic reaction free energy prediction and de novo pathway design
Cited by: 4
Author(s): Lin Wang, Vikas Upadhyay, Costas D. Maranas
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.pone.0256286

Classifying California’s stream thermal regimes for cold-water conservation
Cited by: 12
Author(s): Ann Willis, Ryan A. Peek, Andrew L. Rypel
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pcbi.1008568

Rosetta design with co-evolutionary information retains protein function
Cited by: 10
Author(s): Samuel Schmitz, Moritz Ertelt, Rainer Merkl, Jens Meiler
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0258515

How does individualised physiotherapy work for people with low back pain? A Bayesian Network analysis using randomised controlled trial data
Cited by: 3
Author(s): Bernard X. W. Liew, Jon Ford, Marco Scutari, Andrew J. Hahne
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.pcbi.1007894

Predicting host taxonomic information from viral genomes: A comparison of feature representations
Cited by: 29
Author(s): Francesca Young, Simon Rogers, David L. Robertson
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0255799

Substance use disorders and suicidality in youth: A systematic review and meta-analysis with a focus on the direction of the association
Cited by: 16
Author(s): Charlie Rioux, Anne-Sophie Huet, Natalie Castellanos‐Ryan, Laurianne Fortier, Marie-Ève Blanc, Stéphanie Hamaoui, Marie‐Claude Geoffroy, Johanne Renaud, Jean R. Séguin
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pntd.0007783

A peridomestic Aedes malayensis population in Singapore can transmit yellow fever virus
Cited by: 10
Author(s): Elliott F. Miot, Fabien Aubry, Stéphanie Dabo, Ian H. Mendenhall, Sébastien Marcombe, Cheong Huat Tan, Lee Ching Ng, Anna‐Bella Failloux, Julien Pompon, Paul T. Brey, Louis Lambrechts
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.ppat.1009023

Epstein-Barr virus LMP1 manipulates the content and functions of extracellular vesicles to enhance metastatic potential of recipient cells
Cited by: 12
Author(s): Dingani Nkosi, Sun Lee, Leanne C. Duke, David G. Meckes
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.ppat.1008666

In vitro and in vivo characterization of a recombinant rhesus cytomegalovirus containing a complete genome
Cited by: 19
Author(s): Husam Taher, Eisa Mahyari, Craig N. Kreklywich, Luke S. Uebelhoer, Matthew R. McArdle, Matilda J. Moström, Amruta Bhusari, Michael Nekorchuk, E Xiaofei, Travis Whitmer, Elizabeth A. Scheef, Lesli M. Sprehe, Dawn Roberts, Colette M. Hughes, Kerianne A. Jackson, Andrea N. Selseth, Abigail B. Ventura, Hillary C. Cleveland-Rubeor, Yujuan Yue, Kimberli A. Schmidt, Jason Shao, Paul T. Edlefsen, Jeremy Smedley, Timothy F. Kowalik, Richard J. Stanton, Michael K. Axthelm, Jacob D. Estes, Scott G. Hansen, Amitinder Kaur, Peter A. Barry, Benjamin N. Bimber, Louis J. Picker, Daniel N. Streblow, Klaus Früh, Daniel Malouli
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.ppat.1009166

The latency-associated transcript locus of herpes simplex virus 1 is a virulence determinant in human skin
Cited by: 10
Author(s): Emilia A. H. Vanni, Joseph W. Foley, Andrew J. Davison, Marvin Sommer, Dongmei Liu, Phillip Sung, Jennifer F. Moffat, Leigh Zerboni, Ann M. Arvin
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pcbi.1009037

XENet: Using a new graph convolution to accelerate the timeline for protein design on quantum computers
Cited by: 7
Author(s): Jack Maguire, Daniele Grattarola, Vikram Khipple Mulligan, Eugene Klyshko, Hans Melo
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.pone.0253704

A hitchhiker guide to manta rays: Patterns of association between Mobula alfredi, M. birostris, their symbionts, and other fishes in the Maldives
Cited by: 9
Author(s): Aimee E Nicholson-Jack, Joanna L. Harris, Kirsty L. Ballard, Katherine Mary Elizabeth Turner, Guy M. W. Stevens
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.ppat.1009016

Structural insights into loss of function of a pore forming toxin and its role in pneumococcal adaptation to an intracellular lifestyle
Cited by: 10
Author(s): Dilip Badgujar, Anjali Anil, Angharad E Green, Manalee Vishnu Surve, Shilpa Madhavan, Alison J. Beckett, Ian A. Prior, Barsa Kanchan Jyotshna Godsora, Sanket B. Patil, Prachi More, Shruti Guha Sarkar, Andrea M. Mitchell, Rinti Banerjee, Prashant S. Phale, Timothy J. Mitchell, Daniel R. Neill, Prasenjit Bhaumik, Anirban Banerjee
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.ppat.1008851

Enteroaggregative E. coli Adherence to Human Heparan Sulfate Proteoglycans Drives Segment and Host Specific Responses to Infection
Cited by: 22
Author(s): Anubama Rajan, Matthew J. Robertson, Hannah E. Carter, Nina M. Poole, Justin R. Clark, Sabrina I. Green, Zachary K. Criss, Boyang Zhao, Umesh C. Karandikar, Yikun Xing, Mar Margalef-Català, Nikhil Jain, Reid Wilson, Fan Bai, Joseph M. Hyser, Joseph F. Petrosino, Noah F. Shroyer, Sarah E. Blutt, Cristian Coarfa, Xuezheng Song, B. V. Venkataram Prasad, Manuel R. Amieva, Jane Grande-Allen, Mary K. Estes, Pablo C. Okhuysen, Anthony W. Maresso
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.ppat.1008826

The C. elegans GATA transcription factor elt-2 mediates distinct transcriptional responses and opposite infection outcomes towards different Bacillus thuringiensis strains
Cited by: 19
Author(s): Alejandra Zárate-Potes, Wentao Yang, Barbara Pees, Rebecca Schalkowski, Philipp Segler, Bentje Andresen, Daniela Haase, Rania Nakad, Philip Rosenstiel, Guillaume Tetreau, Jacques‐Philippe Colletier, Hinrich Schulenburg, Katja Dierking
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0243811

Sex differences in the development and expression of a preference for familiar vocal signals in songbirds
Cited by: 9
Author(s): Terushige Fujii, Maki Ikebuchi, Kazuo Okanoya
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.ppat.1008848

Chaperone-tip adhesin complex is vital for synergistic activation of CFA/I fimbriae biogenesis
Cited by: 1
Author(s): Libang He, Hao Wang, Yang Liu, Mei Kang, Tao Li, Changcheng Li, Aiping Tong, Yuanfeng Zhu, Yingjie Song, Stephen J. Savarino, Michael G. Prouty, Di Xia, Rui Bao
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.ppat.1009022

Calcineurin phosphatase activity regulates Varicella-Zoster Virus induced cell-cell fusion
Cited by: 4
Author(s): Momei Zhou, Vivek Kamarshi, Ann M. Arvin, Stefan L. Oliver
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.ppat.1008961

The N-terminus of varicella-zoster virus glycoprotein B has a functional role in fusion
Cited by: 8
Author(s): Stefan L. Oliver, Yi Xing, Dong-Hua Chen, Sook Young Roh, Grigore Pintilie, David Bushnell, Marvin Sommer, Edward Yang, Andrea Carfı́, Wah Chiu, Ann M. Arvin
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.ppat.1008655

Contained Mycobacterium tuberculosis infection induces concomitant and heterologous protection
Cited by: 27
Author(s): Johannes Nemeth, Gregory S. Olson, Alissa C. Rothchild, Ana N. Jahn, Dat Mai, Fergal J. Duffy, Jared L. Delahaye, Sanjay Srivatsan, Courtney R. Plumlee, Kevin B. Urdahl, Elizabeth S. Gold, Alan Aderem, A. Diercks
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.ppat.1008560

Repertoire characterization and validation of gB-specific human IgGs directly cloned from humanized mice vaccinated with dendritic cells and protected against HCMV
Cited by: 13
Author(s): Sebastian J. Theobald, Christoph Kreer, Sahamoddin Khailaie, Agnes Bonifacius, Britta Eiz‐Vesper, Constança Figueiredo, Michael Mach, Marija Backović, Matthias Ballmaier, Johannes Koenig, Henning Olbrich, Andréas Schneider, Valery Volk, Simon Danisch, Lutz Gieselmann, Meryem S. Ercanoglu, Martin Messerle, Constantin von Kaisenberg, Torsten Witte, Frank Klawonn, Michael Meyer–Hermann, Florian Klein, Renata Stripecke
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.ppat.1008736

Recognition of a highly conserved glycoprotein B epitope by a bivalent antibody neutralizing HCMV at a post-attachment step
Cited by: 14
Author(s): Xiaohua Ye, Hang Su, Daniel Wrapp, Daniel C. Freed, Fengsheng Li, Zihao Yuan, Aimin Tang, Leike Li, Zhiqiang Ku, Wei Xiong, Dabbu Kumar Jaijyan, Hua Zhu, Dai Wang, Jason S. McLellan, Ningyan Zhang, Tong-Ming Fu, Zhiqiang An
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0235848

Second-line treatment in advanced gastric cancer: Data from the Spanish AGAMENON registry
Cited by: 13
Author(s): Almudena Cotes Sanchís, Javier Gállego, R Hernández, Virginia Arrazubi, Ana Custodio, Juana María Cano, Gema Aguado, Ismael Macías, Carlos López, Flora López, Laura Visa, Marcelo Garrido, Nieves Martínez Lago, Ana Montes, María Luisa Limón, Aitor Azkárate, Paola Pimentel, Pablo Reguera, Avinash Ramchandani, Juan Diego Cacho, Alfonso Martín Carnicero, Mónica Granja, M Richard, Carolina Hernández Pérez, Alicia Hurtado, Òlbia Serra, Elvira Buxó, R. Vidal Tocino, Paula Jiménez‐Fonseca, Alberto Carmona-Bayonas
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.ppat.1008621

CD11cHi monocyte-derived macrophages are a major cellular compartment infected by Mycobacterium tuberculosis
Cited by: 30
Author(s): Jin‐Hee Lee, Shayla Boyce, Jennifer Powers, Christina E. Baer, Christopher M. Sassetti, Samuel M. Behar
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0236395

The effect of compound kushen injection on cancer cells: Integrated identification of candidate molecular mechanisms
Cited by: 12
Author(s): Jingang Cui, Zhibo Qu, Yuka Harata-Lee, Hao Shen, Thazin Nwe Aung, Wei Wang, R. Daniel Kortschak, David L. Adelson
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1007933

A crowdsourced set of curated structural variants for the human genome
Cited by: 5
Author(s): Lesley Chapman, Noah Spies, Patrick Pai, Chun Shen Lim, Andrew Carroll, Giuseppe Narzisi, Christopher M. Watson, Christos Proukakis, Wayne E. Clarke, Naoki Nariai, Eric T. Dawson, Garan Jones, Daniel Blankenberg, Christian Brueffer, Chunlin Xiao, Sree Rohit Raj Kolora, Noah Alexander, Paul Wolujewicz, Azza E. Ahmed, Graeme C. Smith, Saadlee Shehreen, Aaron M. Wenger, Marc Salit, Justin M. Zook
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0256966

Waiting for the better reward: Comparison of delay of gratification in young children across two cultures
Cited by: 6
Author(s): Ning Ding, Anna Frohnwieser, Rachael Miller, Nicola S. Clayton
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.pone.0242521

In silico analysis identifies a putative cell-of-origin for BRAF fusion-positive cerebellar pilocytic astrocytoma
Cited by: 1
Author(s): Subhi Talal Younes, Betty Herrington
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0235312

Who’s afraid of the big bad boar? Assessing the effect of wild boar presence on the occurrence and activity patterns of other mammals
Cited by: 6
Author(s): Êmila Silveira de Oliveira, Manoel Ludwig da Fontoura Rodrigues, Magnus Machado Severo, Tiágo Gomes dos Santos, Carlos Benhur Kasper
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.ppat.1009215

Injection site vaccinology of a recombinant vaccinia-based vector reveals diverse innate immune signatures
Cited by: 11
Author(s): Jessamine E. Hazlewood, Troy Dumenil, Thuy T. Le, Andrii Slonchak, Stephen H. Kazakoff, Ann‐Marie Patch, Lesley-Ann Gray, Paul M. Howley, Liang Liu, John D. Hayball, Kexin Yan, Daniel J. Rawle, Natalie A. Prow, Andreas Suhrbier
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0232163

Hierarchical structure and memory mechanisms in agreement attraction
Cited by: 6
Author(s): Julie Franck, Matthew Wagers
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0247444

Attention based GRU-LSTM for software defect prediction
Cited by: 12
Author(s): Hafiz Shahbaz Munir, Shengbing Ren, Mubashar Mustafa, Chaudry Naeem Siddique, Shazib Qayyum
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0252378

Metabolomic profiling of microbial disease etiology in community-acquired pneumonia
Cited by: 6
Author(s): Ilona den Hartog, Laura B. Zwep, Stefan M T Vestjens, Amy C. Harms, G. Paul Voorn, Dylan W. de Lange, Willem Jan W Bos, Thomas Hankemeier, E.M.W. van de Garde, Johan G. C. van Hasselt
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0243627

Factors mediating the pressor response to isometric muscle contraction: An experimental study in healthy volunteers during lower body negative pressure
Cited by: 2
Author(s): Niels A. Stens, Jonny Hisdal, Espen F. Bakke, Navjyot Kaur, Archana Sharma, Einar Stranden, Dick H. J. Thijssen, Lars Øivind Høiseth
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pcbi.1009351

Targeted pandemic containment through identifying local contact network bottlenecks
Cited by: 7
Author(s): Shu-Chun Yang, Priyabrata Senapati, Di Wang, Chris T. Bauch, Kimon Fountoulakis
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.pone.0250758

Comprehensive at-arrival transcriptomic analysis of post-weaned beef cattle uncovers type I interferon and antiviral mechanisms associated with bovine respiratory disease mortality
Cited by: 9
Author(s): Matthew A. Scott, Amelia R. Woolums, Cyprianna E. Swiderski, Andy D. Perkins, Bindu Nanduri, David R. Smith, Brandi B. Karisch, William B. Epperson, J. R. Blanton
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0237144

Predictive modeling for trustworthiness and other subjective text properties in online nutrition and health communication
Cited by: 0
Author(s): Janne Kauttonen, Jenni Hannukainen, Pia Tikka, Jyrki Suomala
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0256614

Evidence for a dual-process account of over-imitation: Children imitate anti- and prosocial models equally, but prefer prosocial models once they become aware of multiple solutions to a task
Cited by: 1
Author(s): Hanna Schleihauf, Stefanie Hoehl
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.pone.0227082

HCV genotype profile in Brazil of mono-infected and HIV co-infected individuals: A survey representative of an entire country
Cited by: 7
Author(s): Mariana Fernanda Rodrigues Nutini, James R. Hunter, Leila B. Giron, Ana Flávia Pires, Igor Massaki Kohiyama, Michelle Camargo, Maria Cecília Araripe Sucupira, Adèle Schwartz Benzaken, Paulo Roberto Abrão Ferreira, Hong‐Ha M. Truong, Ricardo Sobhie Diaz
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0248774

Antenatal corticosteroids for impending late preterm (34-36+6 weeks) deliveries—A systematic review and meta-analysis of RCTs
Cited by: 22
Author(s): Mangesh Deshmukh, Sanjay Patole
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0246515

Assessing anxiety, depression and insomnia symptoms among Ebola survivors in Africa: A meta-analysis
Cited by: 15
Author(s): Jeremiah Wezenamo Acharibasam, Batholomew Chireh, Hayelom G. Menegesha
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0231867

Characterizing rhizome bud dormancy in Polygonatum kingianum: Development of novel chill models and determination of dormancy release mechanisms by weighted correlation network analysis
Cited by: 4
Author(s): Yue Wang, Donovan Bailey, Shikai Yin, Xin Dong
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0244071

A class for itself? On the worldviews of the new tech elite
Cited by: 6
Author(s): Hilke Brockmann, Wiebke Drews, John Torpey
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0245146

Powerline right-of-way management and flower-visiting insects: How vegetation management can promote pollinator diversity
Cited by: 5
Author(s): Laura Russo, Hannah Stout, Dana Roberts, Bradley D. Ross, Carolyn G. Mahan
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0240253

Systems genetics analysis of the LXS recombinant inbred mouse strains:Genetic and molecular insights into acute ethanol tolerance
Cited by: 0
Author(s): Richard A. Radcliffe, Robin D. Dowell, Aaron Odell, Phillip A. Richmond, Beth Bennett, Colin Larson, Katerina Kechris, Laura Saba, Pratyaydipta Rudra, Wenmei Shi
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pcbi.1007485

Alterations of the interactome of Bcl-2 proteins in breast cancer at the transcriptional, mutational and structural level
Cited by: 38
Author(s): Simon Mathis Kønig, Vendela Rissler, Thilde Terkelsen, Matteo Lambrughi, Elena Papaleo
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0234003

Inferring transportation mode from smartphone sensors: Evaluating the potential of Wi-Fi and Bluetooth
Cited by: 8
Author(s): Andreas Bjerre-Nielsen, Kelton Minor, Piotr Sapieżyński, Sune Lehmann, David Dreyer Lassen
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0230779

Characterization of subtypes and transmitted drug resistance strains of HIV among Beijing residents between 2001-2016
Cited by: 7
Author(s): Jingrong Ye, Mingqiang Hao, Hui Xing, Yuncong Wang, Juan Wang, Yi Feng, Ruolei Xin, Ji Zeng, Shuai Zhao, Yinxiao Hao, Jing Chen, Yuhua Ruan, Xue Li, Yiming Shao, Hongzhou Lu
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0231317

Predictive validity in middle childhood of short tests of early childhood development used in large scale studies compared to the Bayley-III, the Family Care Indicators, height-for-age, and stunting: A longitudinal study in Bogota, Colombia
Cited by: 17
Author(s): Marta Rubio‐Codina, Sally Grantham‐McGregor
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0242396

Microbial population shift and metabolic characterization of silver diamine fluoride treatment failure on dental caries
Cited by: 8
Author(s): Benjamin C. Paul, Maria A. Sierra, Fangxi Xu, Yasmi O. Crystal, Xin Li, Deepak Saxena, Ryan Richard Ruff
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0256563

Evidence for an increase in cannabis use in Iran – A systematic review and trend analysis
Cited by: 10
Author(s): Yasna Rostam–Abadi, Jaleh Gholami, Ma­soumeh Amin-Esmaeili, Shahab Baheshmat, Marziyeh Hamzehzadeh, Hossein Rafiemanesh, Morteza Nasserbakht, Leila Ghalichi, Anousheh Safarcherati, Farhad Taremian, Ramin Mojtabai, Afarin Rahimi‐Movaghar
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.pone.0227154

Genes associated with body weight gain and feed intake identified by meta-analysis of the mesenteric fat from crossbred beef steers
Cited by: 8
Author(s): A. K. Lindholm‐Perry, H. C. Freetly, W. T. Oliver, Lea A. Rempel, Brittney N Keel
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0252711

The Goto Kakizaki rat: Impact of age upon changes in cardiac and renal structure, function
Cited by: 5
Author(s): Patrick Meagher, Robert Civitarese, Xavier Lee, Mark Forrest Gordon, Antoinette Bugyei-Twum, Jean-François Desjardins, Golam Kabir, Yanling Zhang, Hari Kosanam, Aylin Visram, Howard Leong‐Poi, Andrew Advani, Kim A. Connelly
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0243639

The hallmarks of childhood abuse and neglect: A systematic review
Cited by: 15
Author(s): Jason Lang, Daniel M. Kerr, Papoula Petri-Romão, Tracey McKee, Helen Smith, Naomi Wilson, Marianna Zavrou, Paul G. Shiels, Helen Minnis
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0246661

Evaluating changes in the prevalence of female genital mutilation/cutting among 0-14 years old girls in Nigeria using data from multiple surveys: A novel Bayesian hierarchical spatio-temporal model
Cited by: 7
Author(s): Chibuzor Christopher Nnanatu, Glory Atilola, Paul Nzinga Komba, Lubanzadio Mavatikua, Zhuzhi Moore, Dennis Matanda, Otibho Obianwu, Ngianga‐Bakwin Kandala
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0235422

Non-specific protection from respiratory tract infections in cattle generated by intranasal administration of an innate immune stimulant
Cited by: 8
Author(s): William H. Wheat, Lyndah Chow, Vanessa Rozo, Julia A. Herman, Kelly Still Brooks, Aimée C. Colbath, R.L. Hunter, Steven Dow
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1007930

Phenotypic delay in the evolution of bacterial antibiotic resistance: Mechanistic models and their implications
Cited by: 6
Author(s): Martín Carballo-Pacheco, Michael D. Nicholson, Elin Lilja, Rosalind J. Allen, Bartłomiej Wacław
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pgen.1009600

Antagonistic fungal enterotoxins intersect at multiple levels with host innate immune defences
Cited by: 10
Author(s): Xing Zhang, Benjamin W. Harding, Dina Aggad, Damien Courtine, Jia‐Xuan Chen, Nathalie Pujol, Jonathan J. Ewbank
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0236836

Time-series cardiovascular risk factors and receipt of screening for breast, cervical, and colon cancer: The Guideline Advantage
Cited by: 2
Author(s): Aixia Guo, Bettina F. Drake, Yosef Khan, James R. Langabeer, Randi E. Foraker
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0243939

Feasibility of non-contact cardiorespiratory monitoring using impulse-radio ultra-wideband radar in the neonatal intensive care unit
Cited by: 13
Author(s): Won Hyuk Lee, Yong-Gu Lee, Jae Yoon Na, Seung Hyun Kim, Hyun Ju Lee, Young‐Hyo Lim, Seok Hyun Cho, Sung Ho Cho
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0233157

Two halves are less than the whole: Evidence of a length bisection bias in fish (Poecilia reticulata)
Cited by: 5
Author(s): Maria Santacà, Christian Agrillo
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0257643

Geographical variation in demand, utilization, and outcomes of hospital services for COVID-19 in Brazil: A descriptive serial cross-sectional study
Cited by: 7
Author(s): Claudia Cristina de Aguiar Pereira, Mônica Martins, Sheyla Maria Lemos Lima, Carla Lourenço Tavares de Andrade, Fernando Ramalho Gameleira Soares, Margareth Crisóstomo Portela
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.pone.0207827

Benchmarking treewidth as a practical component of tensor network simulations
Cited by: 11
Author(s): Eugene Dumitrescu, Allison L. Fisher, Timothy D. Goodrich, Travis S. Humble, Blair D. Sullivan, Andrew Wright
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0223992

To tweet or not to tweet, that is the question: A randomized trial of Twitter effects in medical education
Cited by: 10
Author(s): Lauren A. Maggio, Todd C. Leroux, Anthony R. Artino
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pcbi.1009085

Analyzing cancer gene expression data through the lens of normal tissue-specificity
Cited by: 8
Author(s): H. Robert Frost
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0250356

Over half of clinical practice guidelines use non-systematic methods to inform recommendations: A methods study
Cited by: 31
Author(s): Carole Lunny, Cynthia Ramasubbu, Lorri Puil, Tracy Liu, Savannah Gerrish, Douglas M Salzwedel, Barbara Mintzes, James M Wright
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pcbi.1008366

A Bayesian non-parametric mixed-effects model of microbial growth curves
Cited by: 8
Author(s): Peter D. Tonner, Cynthia L. Darnell, Francesca Bushell, Peter A. Lund, Amy K. Schmid, Scott C. Schmidler
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pcbi.1007287

DeepHiC: A generative adversarial network for enhancing Hi-C data resolution
Cited by: 48
Author(s): Huasheng Hong, Shuai Jiang, Hao Li, Guangwei Du, Yu Sun, Tao Huan, Qimin Cheng, Chenghui Zhao, Ruijiang Li, Wanying Li, Xiaoyao Yin, Yangchen Huang, Li Cheng, Hebing Chen, Xiaochen Bo
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pcbi.1008977

Swarm: A federated cloud framework for large-scale variant analysis
Cited by: 2
Author(s): Amir Bahmani, Kyle Ferriter, Vandhana Krishnan, Arash Alavi, Amir Alavi, Philip S. Tsao, M Snyder, Cuiping Pan
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0235819

Pre-colonial Amerindian legacies in forest composition of southern Brazil
Cited by: 11
Author(s): Aline Pereira Cruz, Eduardo Luiz Hettwer Giehl, Carolina Levis, Juliana Salles Machado, Lucas Reis Bueno, Nivaldo Peroni
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0241609

Deaf intermarriage has limited effect on the prevalence of recessive deafness and no effect on underlying allelic frequency
Cited by: 5
Author(s): Derek C. Braun, Shaili Jain, Eric J. Epstein, Brian H. Greenwald, Brienna Herold, Margaret Gray
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0244752

Expert opinion as priors for random effects in Bayesian prediction models: Subclinical ketosis in dairy cows as an example
Cited by: 1
Author(s): Haifang Ni, Irene Klugkist, Saskia van der Drift, R. Jorritsma, G.A. Hooijer, M. Nielen
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0227138

Cost-effectiveness of diagnostic algorithms including lateral-flow urine lipoarabinomannan for HIV-positive patients with symptoms of tuberculosis
Cited by: 3
Author(s): Nadia Yakhelef, Martine Audibert, Gabriella Ferlazzo, Joseph Sitienei, Steve Wanjala, Francis Varaine, Maryline Bonnet, Helena Huerga
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pcbi.1007983

Task-evoked activity quenches neural correlations and variability across cortical areas
Cited by: 52
Author(s): Takuya Ito, Scott L. Brincat, Markus Siegel, Ravi D. Mill, Biyu J. He, Earl K. Miller, Horacio G. Rotstein, Michael W. Cole
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0244433

A sound coding strategy based on a temporal masking model for cochlear implants
Cited by: 6
Author(s): E Kludt, Waldo Nogueira, Thomas Lenarz, Andreas Buechner
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0242880

A shotgun metagenomic investigation of the microbiota of udder cleft dermatitis in comparison to healthy skin in dairy cows
Cited by: 7
Author(s): Lisa Ekman, Elisabeth Bagge, Ann-Kristin Nyman, Karin Persson Waller, Märit Pringle, Bo Segerman
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0234573

Under 10 mortality patterns, risk factors, and mechanisms in low resource settings of Eastern Uganda: An analysis of event history demographic and verbal social autopsy data
Cited by: 2
Author(s): Rornald Muhumuza Kananura, Tiziana Leone, Tryphena Nareeba, Dan Kajungu, Peter Waiswa, Arjan Gjonça
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pgen.1009003

Serotonergic modulation of visual neurons in Drosophila melanogaster
Cited by: 11
Author(s): Maureen M. Sampson, Katherine M. Myers Gschweng, Ben J. Hardcastle, Shivan L. Bonanno, Tyler R. Sizemore, Rebecca C. Arnold, Fuying Gao, Andrew M. Dacks, Mark A. Frye, David E. Krantz
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0243966

Correlation between hospitalized patients’ demographics, symptoms, comorbidities, and COVID-19 pandemic in Bahia, Brazil
Cited by: 14
Author(s): Márcio C. F. Macedo, Isabelle Matos Pinheiro, Caio J. L. Carvalho, H Fraga, Isaac P. C. Araujo, Simone S. Montes, Otávio A. C. Araujo, Leonardo Santos de Brito Alves, Hugo Saba, Márcio Luís Valença Araújo, Ivonete T. L. Queiroz, Romilson Lopes Sampaio, Márcia São Pedro Leal Souza, Ana Claudia F. N. da Silva, Antonio Carlos Santana de Souza
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0254444

Using Assessment Design Decision Framework in understanding the impact of rapid transition to remote education on student assessment in health-related colleges: A qualitative study
Cited by: 8
Author(s): Myriam Jaam, Zachariah Nazar, Daniel Rainkie, Diana Alsayed Hassan, Farhat Hussain, Salah Kassab, Abdelali Agouni
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0245439

Impact of integrating objective structured clinical examination into academic student assessment: Large-scale experience in a French medical school
Cited by: 10
Author(s): Alexandre Matet, Ludovic Fournel, F. Gaillard, Laurence Amar, Jean‐Benoît Arlet, Stéphanie Baron, Anne‐Sophie Bats, Céline Buffel du Vaure, Caroline Charlier, Victoire de Lastours, Albert Faye, Eve Jablon, Natacha Kadlub, Julien Leguen, David Lebeaux, Alexandre Malmartel, Tristan Mirault, Benjamin Planquette, Alexis Régent, Jean-Laurent Thébault, Alexy Tran-Dinh, Alexandre Nuzzo, Guillaume Turc, Gérard Friedlander, Philippe Ruszniewski, Cécile Badoual, Brigitte Ranque, Mehdi Oualha, Marie Courbebaisse
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0253102

Signal-based optical map alignment
Cited by: 1
Author(s): Mehmet Akdel, Henri van de Geest, Elio Schijlen, Irma M.H. van Rijswijck, Eddy J. Smid, Gabino F. Sánchez-Pérez, Dick de Ridder
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.pntd.0009120

Endemicity of Paragonimus and paragonimiasis in Sub-Saharan Africa: A systematic review and mapping reveals stability of transmission in endemic foci for a multi-host parasite system
Cited by: 9
Author(s): Muriel Rabone, Joris Wiethase, Paul F. Clark, David Rollinson, Neil Cumberlidge, Aidan M. Emery
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0232699

Azolla filiculoides L. as a source of metal-tolerant microorganisms
Cited by: 22
Author(s): Artur Banach, Agnieszka Kuźniar, Jarosław Grządziel, Agnieszka Woliñska
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0239863

Eco-evo-devo implications and archaeobiological perspectives of trait covariance in fruits of wild and domesticated grapevines
Cited by: 13
Author(s): Vincent Bonhomme, Sandrine Picq, Sarah Ivorra, Allowen Evin, Thierry Pastor, Roberto Baciliéri, Thierry Lacombe, Isabel Figueiral, Jean‐Frédéric Terral, Laurent Bouby
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0247026

How does COVID-19 affect electoral participation? evidence from the French municipal elections
Cited by: 34
Author(s): Abdul Noury, François Audigier, Olivier Gergaud, Alexandre Garel
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pntd.0008270

Impact of tiny targets on Glossina fuscipes quanzensis, the primary vector of human African trypanosomiasis in the Democratic Republic of the Congo
Cited by: 26
Author(s): Iñaki Tirados, Andrew Hope, Richard Selby, Fabrice Mpembelé, Erick Mwamba Miaka, Marleen Boelaert, Mike Lehane, Stephen J. Torr, Michelle C. Stanton
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pcbi.1009301

PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial
Cited by: 4
Author(s): Michael Pickles, Anne Cori, William J. M. Probert, Rafael Sauter, Robert Hinch, Sarah Fidler, Helen Ayles, Peter Böck, Deborah Donnell, Ethan Wilson, Estelle Piwowar‐Manning, Sian Floyd, Richard Hayes, Christophe Fraser, Hptn Study Team
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.pone.0250256

A biome-wide experiment to assess the effects of propagule size and treatment on the survival of Portulacaria afra (spekboom) truncheons planted to restore degraded subtropical thicket of South Africa
Cited by: 8
Author(s): Marius L. van der Vyver, Anthony Mills, Richard M. Cowling
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0238255

Most frequent South Asian haplotypes of ACE2 share identity by descent with East Eurasian populations
Cited by: 24
Author(s): Anshika Srivastava, Rudra Kumar Pandey, Prajjval Pratap Singh, Pramod Kumar, Avinash Arvind Rasalkar, Rakesh Tamang, George van Driem, Pankaj Shrivastava, Gyaneshwer Chaubey
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0249071

Predicting innovative firms using web mining and deep learning
Cited by: 19
Author(s): Jan Kinne, David Lenz
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0234354

Negshell casting: 3D-printed structured and sacrificial cores for soft robot fabrication
Cited by: 5
Author(s): Pornthep Preechayasomboon, Eric Rombokas
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pntd.0009676

Peridomestic natural breeding sites of Nyssomyia whitmani (Antunes and Coutinho) in an endemic area of tegumentary leishmaniasis in northeastern Argentina
Cited by: 3
Author(s): Mariana Manteca-Acosta, Regino Cavia, María Eugenia Utgés, Oscar Daniel Salomón, María Soledad Santini
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0232753

A non-stationary Markov model for economic evaluation of grass pollen allergoid immunotherapy
Cited by: 3
Author(s): Massimo Bilancia, Giuseppe Pasculli, Danilo Di Bona
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0230439

A novel multi-word paradigm for investigating semantic context effects in language production
Cited by: 2
Author(s): Cornelia van Scherpenberg, Rasha Abdel Rahman, Hellmuth Obrig
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0242104

Resource selection of a montane endemic: Sex-specific differences in white-bellied voles (Microtus longicaudus leucophaeus)
Cited by: 4
Author(s): N. Dutt, Amanda M. Veals, John L. Koprowski
Software Mentions: 3
Published: about 4 years ago