10.1371/journal.pntd.0009635

The influence of leprosy-related clinical and epidemiological variables in the occurrence and severity of COVID-19: A prospective real-world cohort study
Cited by: 14
Author(s): Selma Regina Penha Silva Cerqueira, Patrícia Duarte Deps, Débora Rosilei Miquini de Freitas Cunha, Natanael Victor Furtunato Bezerra, Daniel Holanda Barroso, Ana Bárbara Sapienza Pinheiro, Gecilmara Salviato Pillegi, Taynah Alves Rocha Repsold, Patrícia Shu Kurizky, Simon M Collin, Ciro Martins Gomes
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pmed.1003393

The risk of Plasmodium vivax parasitaemia after P. falciparum malaria: An individual patient data meta-analysis from the WorldWide Antimalarial Resistance Network
Cited by: 29
Author(s): Mohammad Sharif Hossain, Robert J. Commons, Nicholas M. Douglas, Kamala Thriemer, Bereket Alemayehu, Chanaki Amaratunga, Anupkumar R. Anvikar, Elizabeth A. Ashley, Puji Budi Setia Asih, Verena I. Carrara, Chanthap Lon, Umberto D’Alessandro, Timothy Davis, Arjen M. Dondorp, Michael D. Edstein, Rick M. Fairhurst, Marcelo U. Ferreira, Jimee Hwang, Bart Janssens, Harin Karunajeewa, J. R. Kiechel, Simone Ladeia‐Andrade, Moses Laman, Mayfong Mayxay, Rose McGready, Brioni R. Moore, Ivo Müeller, Paul N. Newton, Nguyen Thanh Thuy-Nhien, Harald Noedl, François Nosten, Aung Phae Phyo, Jeanne Rini Poespoprodjo, David Saunders, Frank Smithuis, Michele Spring, Kasia Stepniewska, Seila Suon, Yupin Suputtamongkol, Din Syafruddin, Hien T. Tran, Neena Valecha, Michel Van Herp, Michèle van Vugt, Nicholas J. White, Philippe J. Guérin, Julie A. Simpson, Ric N. Price
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1009351

Targeted pandemic containment through identifying local contact network bottlenecks
Cited by: 7
Author(s): Shu-Chun Yang, Priyabrata Senapati, Di Wang, Chris T. Bauch, Kimon Fountoulakis
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pntd.0008234

Whole genome sequencing of Plasmodium vivax isolates reveals frequent sequence and structural polymorphisms in erythrocyte binding genes
Cited by: 20
Author(s): Anthony M. Ford, Daniel Kepple, Beka Raya Abagero, Jordan Connors, Richard D. Pearson, Sarah Auburn, Sisay Getachew, Colby T. Ford, Karthigayan Gunalan, Louis H. Miller, Daniel Janies, Julian C. Rayner, Guiyun Yan, Delenasaw Yewhalaw, Eugenia Lo
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0256784

Immunometabolic signatures predict risk of progression to sepsis in COVID-19
Cited by: 19
Author(s): Ana Sofía Herrera-Van Oostdam, Julio Enrique Castañeda-Delgado, Juan José Oropeza-Valdez, Juan Carlos Borrego, Joel Monárrez‐Espino, Jiamin Zheng, Rupasri Mandal, Lun Zhang, Elizabeth Soto-Guzmán, Julio César Fernández-Ruiz, Fátima de Lourdes Ochoa-González, Flor María Trejo Medinilla, Jesús Adrián López, David S. Wishart, José Antonio Enciso-Moreno, Yamilé López‐Hernández
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pntd.0008091

Trypanosomatid selenophosphate synthetase structure, function and interaction with selenocysteine lyase
Cited by: 4
Author(s): Marco Túlio Alves da Silva, Ivan Rosa e Silva, Lívia Maria Faim, Natália Karla Bellini, Murilo Leão Pereira, Ana Laura Lima, Teresa Cristina Leandro de Jesus, Fernanda Cristina Costa, Tatiana F. Watanabe, H.M. Pereira, Sandro Roberto Valentini, Cleslei Fernando Zanelli, Júlio César Borges, Márcio Vinícius Bertacini Dias, Júlia Pinheiro Chagas da Cunha, Bidyottam Mittra, Norma W. Andrews, Otávio Henrique Thiemann
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0243193

From anxiety to action—Experience of threat, emotional states, reactance, and action preferences in the early days of COVID-19 self-isolation in Germany and Austria
Cited by: 17
Author(s): Stefan Reiß, Vittoria Franchina, Chiara Jutzi, Robin Willardt, Eva Jonas
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1007970

Real time structural search of the Protein Data Bank
Cited by: 36
Author(s): Dmytro Guzenko, S.K. Burley, José M. Duarte
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0251659

Characterizing and predicting person-specific, day-to-day, fluctuations in walking behavior
Cited by: 11
Author(s): Guillaume Chevance, Dario Baretta, Matti Toivo Juhani Heino, Olga Perski, Merlijn Olthof, Predrag Klasnja, Eric B. Hekler, Job G. Godino
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0245058

Efficient association mapping from k-mers—An application in finding sex-specific sequences
Cited by: 5
Author(s): Zakaria Mehrab, Jaiaid Mobin, Ibrahim Asadullah Tahmid, Atif Rahman
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0243772

Phenotypical antimicrobial resistance data of clinical and non-clinical Escherichia coli from poultry in Germany between 2014 and 2017
Cited by: 8
Author(s): Octavio Mesa-Varona, Heike Kaspar, Mirjam Grobbel, Bernd‐Alois Tenhagen
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pntd.0008932

Genetic diversity of Trypanosoma cruzi parasites infecting dogs in southern Louisiana sheds light on parasite transmission cycles and serological diagnostic performance
Cited by: 13
Author(s): Eric Dumonteil, Ardem Elmayan, Alicia Majeau, Weihong Tu, Brandy Duhon, Preston A. Marx, Wendy Wolfson, Garry Balsamo, Claudia Herrera
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0254943

The influence of LncRNA H19 polymorphic variants on susceptibility to cancer: A systematic review and updated meta-analysis of 28 case-control studies
Cited by: 2
Author(s): Kunpeng Wang, Zheng Zhu, Yiqiu Wang, Dayuan Zong, Peng Xue, Jingyu Gu, Da Yong Lu, Chuanquan Tu
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0236082

Microbial community dissimilarity for source tracking with application in forensic studies
Cited by: 8
Author(s): Kyle M. Carter, L. Meng, Qianwen Luo, Hongmei Jiang, Lingling An
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0231415

What matters to women in the postnatal period: A meta-synthesis of qualitative studies
Cited by: 89
Author(s): Kenneth William Finlayson, Nicola Crossland, Mercedes Bonet, Soo Downe
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pcbi.1008939

How multisite phosphorylation impacts the conformations of intrinsically disordered proteins
Cited by: 22
Author(s): Fan Jin, Frauke Gräter
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pntd.0009106

Megacities as drivers of national outbreaks: The 2017 chikungunya outbreak in Dhaka, Bangladesh
Cited by: 14
Author(s): Ayesha S. Mahmud, Iqbal Kabir, Kenth Engø‐Monsen, Sania Tahmina, Baizid Khoorshid Riaz, Akram Hossain, Fahmida Khanom, Mujibor Rahman, Khalilur Rahman, Mehruba Sharmin, Dewan Mashrur Hossain, Shakila Yasmin, Mostafa Ahmed, Mirza Afreen Fatima Lusha, Caroline O. Buckee
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0244860

Regional anesthesia educational material utilization varies by World Bank income category: A mobile health application data study
Cited by: 3
Author(s): Vanessa Moll, Edward R. Mariano, Jamie Kitzman, Vikas N O’Reilly-Shah, Craig S. Jabaley
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1009069

Mesenchyme-derived IGF2 is a major paracrine regulator of pancreatic growth and function
Cited by: 16
Author(s): Constanze M. Hammerle, Ionel Sandovici, Gemma V. Brierley, Nicola Smith, Warren E. Zimmer, Ilona Zvetkova, Haydn M. Prosser, Yoichi Sekita, Brian Lam, Marcella Ma, Wendy N. Cooper, Antonio Vidal‐Puig, Susan E. Ozanne, Gema Medina‐Gómez, Miguel Constância
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1007485

Alterations of the interactome of Bcl-2 proteins in breast cancer at the transcriptional, mutational and structural level
Cited by: 38
Author(s): Simon Mathis Kønig, Vendela Rissler, Thilde Terkelsen, Matteo Lambrughi, Elena Papaleo
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1008960

Interplay between UNG and AID governs intratumoral heterogeneity in mature B cell lymphoma
Cited by: 3
Author(s): Pilar Delgado, Ángel F. Álvarez-Prado, Ester Marina-Zárate, Isora V. Sernández, Sonia M. Mur, Jorge de la Barrera, Fátima Sánchez-Cabo, Marta Cañamero, Antonio Molina, Laura Belver, Virginia G. de Yébenes, Almudena R. Ramiro
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1008675

Tryptamine accumulation caused by deletion of MrMao-1 in Metarhizium genome significantly enhances insecticidal virulence
Cited by: 19
Author(s): Xiaowei Tong, Yundan Wang, Pengcheng Yang, Chengshu Wang, Le Kang
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pcbi.1007930

Phenotypic delay in the evolution of bacterial antibiotic resistance: Mechanistic models and their implications
Cited by: 6
Author(s): Martín Carballo-Pacheco, Michael D. Nicholson, Elin Lilja, Rosalind J. Allen, Bartłomiej Wacław
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0224030

Hippocampal subfield volumes and pre-clinical Alzheimer’s disease in 408 cognitively normal adults born in 1946
Cited by: 20
Author(s): Thomas D. Parker, David M. Cash, Christopher A. Lane, Kirsty Lu, Ian B. Malone, Jennifer M. Nicholas, Sarah‐Naomi James, Ashvini Keshavan, Heidi Murray‐Smith, Andrew Wong, Sarah M Buchanan, Sarah E Keuss, Carole H. Sudre, Marc Modat, David L. Thomas, Sebastian J. Crutch, Marcus Richards, Nick C. Fox, Jonathan M. Schott
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0239847

The suitability of native flowers as pollen sources for Chrysoperla lucasina (Neuroptera: Chrysopidae)
Cited by: 6
Author(s): R. Herrera, María Luisa Fernández Sierra, Francisca Ruano
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pntd.0007997

Heatwaves and dengue outbreaks in Hanoi, Vietnam: New evidence on early warning
Cited by: 22
Author(s): Jian Cheng, Hilary Bambrick, Laith Yakob, Gregor J. Devine, Francesca D. Frentiu, Đỗ Thị Thanh Toàn, Pham Quang Thai, Zhiwei Xu, Wenbiao Hu
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0240450

Assessing multiple score functions in Rosetta for drug discovery
Cited by: 18
Author(s): Shannon Toney Smith, Jens Meiler
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0245687

The Epidemiology of first and second-line drug-resistance Mycobacterium tuberculosis complex common species: Evidence from selected TB treatment initiating centers in Ethiopia
Cited by: 11
Author(s): Biniyam Dagne, Kassu Desta, Rahel Fekade, Misikir Amare, Mekonnen Tadesse, Getu Diriba, Betselot Zerihun, Melak Getu, Waganeh Sinshaw, Getachew Seid, Dinka Fekadu Gamtesa, Gebeyehu Assefa, Ayinalem Alemu
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0237356

DESS deconstructed: Is EDTA solely responsible for protection of high molecular weight DNA in this common tissue preservative?
Cited by: 7
Author(s): Amy Sharpe, S. Barrios, Sarah Gayer, Elisha Allan-Perkins, David Stein, Hannah J Appiah-Madson, Rosalia Falco, Daniel L. Distel
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0233920

Smooth operator: Modifying the Anhøj rules to improve runs analysis in statistical process control
Cited by: 3
Author(s): Jacob Anhøj, Tore Wentzel‐Larsen
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pcbi.1008366

A Bayesian non-parametric mixed-effects model of microbial growth curves
Cited by: 8
Author(s): Peter D. Tonner, Cynthia L. Darnell, Francesca Bushell, Peter A. Lund, Amy K. Schmid, Scott C. Schmidler
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0232774

The effectiveness of smoking cessation, alcohol reduction, diet and physical activity interventions in changing behaviours during pregnancy: A systematic review of systematic reviews
Cited by: 18
Author(s): Nicola Heslehurst, Louise Hayes, Dan Jones, James Newham, Joan Olajide, Louise A. McLeman, Catherine McParlin, Caroline De Brún, Liane B. Azevedo
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pcbi.1008977

Swarm: A federated cloud framework for large-scale variant analysis
Cited by: 2
Author(s): Amir Bahmani, Kyle Ferriter, Vandhana Krishnan, Arash Alavi, Amir Alavi, Philip S. Tsao, M Snyder, Cuiping Pan
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0251765

Targeting neovascularization and respiration of tumor grafts grown on chick embryo chorioallantoic membranes
Cited by: 5
Author(s): Hyrije Ademi, Dheeraj Shinde, Max Gassmann, Daniela Gerst, Hassan Chaachouay, Johannes Vogel, Thomas A. Gorr
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0226224

A geographically weighted random forest approach for evaluate forest change drivers in the Northern Ecuadorian Amazon
Cited by: 19
Author(s): Fabián Santos, Valerie Graw, Santiago Bonilla
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0245026

Estimating pulse wave velocity from the radial pressure wave using machine learning algorithms
Cited by: 17
Author(s): Wen Jin, Philip Chowienczyk, Jordi Alastruey
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pntd.0009120

Endemicity of Paragonimus and paragonimiasis in Sub-Saharan Africa: A systematic review and mapping reveals stability of transmission in endemic foci for a multi-host parasite system
Cited by: 9
Author(s): Muriel Rabone, Joris Wiethase, Paul F. Clark, David Rollinson, Neil Cumberlidge, Aidan M. Emery
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0230517

Dissociable mappings of tonic and phasic pupillary features onto cognitive processes involved in mental arithmetic
Cited by: 11
Author(s): Russell A. Cohen Hoffing, Nina Lauharatanahirun, Daniel E. Forster, Javier O. Garcia, Jean M. Vettel, Steven M. Thurman
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1008681

The domesticated transposase ALP2 mediates formation of a novel Polycomb protein complex by direct interaction with MSI1, a core subunit of Polycomb Repressive Complex 2 (PRC2)
Cited by: 20
Author(s): Christos N. Velanis, Pumi Perera, Bennett Thomson, Erica de Leau, Shih Chieh Liang, Ben Hartwig, Alexander Förderer, Harry Thornton, Pedro Arêde, Jiawen Chen, Kimberly M. Webb, Serin Gümüs, Geert De Jaeger, Clinton A. Page, C. Nathan Hancock, Christos Spanos, Juri Rappsilber, Philipp Voigt, Franziska Turck, Frank Wellmer, Justin Goodrich
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0253515

Risk of adverse events in gastrointestinal endoscopy: Zero-inflated Poisson regression mixture model for count data and multinomial logit model for the type of event
Cited by: 7
Author(s): Marco Gemma, Fulvia Pennoni, Roberta Tritto, Massimo Aglietta
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0243785

Systematic review and meta-analysis of late auditory evoked potentials as a candidate biomarker in the assessment of tinnitus
Cited by: 16
Author(s): Emilie Cardon, Iris Joossen, Hanne Vermeersch, Laure Jacquemin, Griet Mertens, Olivier M. Vanderveken, Vedat Topsakal, Paul Van de Heyning, Vincent Van Rompaey, Annick Gilles
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pntd.0009676

Peridomestic natural breeding sites of Nyssomyia whitmani (Antunes and Coutinho) in an endemic area of tegumentary leishmaniasis in northeastern Argentina
Cited by: 3
Author(s): Mariana Manteca-Acosta, Regino Cavia, María Eugenia Utgés, Oscar Daniel Salomón, María Soledad Santini
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0236097

A novel serum miRNA-pair classifier for diagnosis of sarcoma
Cited by: 1
Author(s): Zheng Jin, Shanshan Liu, Pei‐Wen Zhu, Mengyan Tang, Yuanxin Wang, Yuan Tian, Dong Li, X. D. Zhu, Dongmei Yan, Zhifeng Zhu
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pgen.1008792

Drosophila models of pathogenic copy-number variant genes show global and non-neuronal defects during development
Cited by: 8
Author(s): Tanzeen Yusuff, Matthew Jensen, Sneha Yennawar, Lucilla Pizzo, S. Karthikeyan, Dagny J. Gould, Avik Sarker, Erika Gedvilaite, Yurika Matsui, Janani Iyer, Zhi Chun Lai, Santhosh Girirajan
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0229492

First-line targ veted therapies of advanced hepatocellular carcinoma: A Bayesian network analysis of randomized controlled trials
Cited by: 3
Author(s): Wei Ding, Yulin Tan, Yan Qian, Wenbo Xue, Yibo Wang, Peng Jiang, Xuezhong Xu
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pcbi.1007894

Predicting host taxonomic information from viral genomes: A comparison of feature representations
Cited by: 29
Author(s): Francesca Young, Simon Rogers, David L. Robertson
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0229490

NAA and 6-BA promote accumulation of oleanolic acid by JA regulation in Achyranthes bidentata Bl
Cited by: 1
Author(s): Yanqing Liu, Li Tang, Can Wang, Jinting Li
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0231718

Comparing the efficiency of open and enclosed filtration systems in environmental DNA quantification for fish and jellyfish
Cited by: 20
Author(s): Sayaka Takahashi, Masato Sakata, Toshifumi Minamoto, Reiji Masuda
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1009710

DNA methyltransferase CHROMOMETHYLASE3 prevents ONSEN transposon silencing under heat stress
Cited by: 18
Author(s): Kohei Nozawa, Jiani Chen, Jingchao Jiang, Sarah M. Leichter, Masataka Yamada, Takamasa Suzuki, Fengquan Liu, Hidetaka Ito, Xuehua Zhong
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pgen.1009321

Regulating the expression of gene drives is key to increasing their invasive potential and the mitigation of resistance
Cited by: 63
Author(s): Andrew Hammond, Xenia Karlsson, Ioanna Morianou, Kyros Kyrou, Andrea Beaghton, Matthew O. Gribble, Nace Kranjc, Roberto Galizi, Austin Burt, Andrea Crisanti, Tony Nolan
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1009301

PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial
Cited by: 4
Author(s): Michael Pickles, Anne Cori, William J. M. Probert, Rafael Sauter, Robert Hinch, Sarah Fidler, Helen Ayles, Peter Böck, Deborah Donnell, Ethan Wilson, Estelle Piwowar‐Manning, Sian Floyd, Richard Hayes, Christophe Fraser, Hptn Study Team
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0237373

Do dogs eavesdrop on human interactions in a helping situation?
Cited by: 4
Author(s): Hoi-Lam Jim, Sarah Marshall-Pescini, Friederike Range
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0242078

How automatic speed control based on distance affects user behaviours in telepresence robot navigation within dense conference-like environments.
Cited by: 6
Author(s): Anil Ufuk Batmaz, Jens Maiero, Ernst Kruijff, Bernhard E. Riecke, Carman Neustaedter, Wolfgang Stuerzlinger
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1009686

A ubiquitin-like protein encoded by the “noncoding” RNA TINCR promotes keratinocyte proliferation and wound healing
Cited by: 11
Author(s): Akihiro Nita, Akinobu Matsumoto, Ronghao Tang, Chisa Shiraishi, Kazuya Ichihara, Daisuke Saito, Mikita Suyama, Tomoharu Yasuda, Gaku Tsuji, Masutaka Furue, Bunpei Katayama, Toshiyuki Ozawa, Takaho Murata, Teruki Dainichi, Kenji Kabashima, Atsushi Hatano, Masaki Matsumoto, Keiichi I. Nakayama
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0241376

Frequency distribution of journalistic attention for scientific studies and scientific sources: An input–output analysis
Cited by: 8
Author(s): Markus Lehmkuhl, Nikolai Promies
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0236958

Supply-side options to reduce land requirements of fully renewable electricity in Europe
Cited by: 15
Author(s): Tim Tröndle
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0253182

Less need for differentiation? Intestinal length of reptiles as compared to mammals
Cited by: 4
Author(s): Monika I. Hoppe, Carlo Meloro, Mark S. Edwards, Daryl Codron, Marcus Clauss, María J. Duque-Correa
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0242030

dagLogo: An R/Bioconductor package for identifying and visualizing differential amino acid group usage in proteomics data
Cited by: 10
Author(s): Jianhong Ou, Haibo Li, Niraj K. Nirala, Alexey Stukalov, Usha Acharya, Michael R. Green, Lihua Julie Zhu
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0222432

The intermediate proteasome is constitutively expressed in pancreatic beta cells and upregulated by stimulatory, low concentrations of interleukin 1 β
Cited by: 13
Author(s): Muhammad Saad Khilji, Danielle Verstappen, Tina Dahlby, Michala Prause, Celina Pihl, Sophie Emilie Bresson, Tenna Holgersen Bryde, Phillip Alexander Keller Andersen, Kristian Klindt, Dušan Živković, Marie‐Pierre Bousquet, Björn Tyrberg, Thomas Mandrup‐Poulsen, Michał Marzec
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0227507

Whole blood transcriptomic analysis of beef cattle at arrival identifies potential predictive molecules and mechanisms that indicate animals that naturally resist bovine respiratory disease
Cited by: 29
Author(s): Matthew A. Scott, Amelia R. Woolums, Cyprianna E. Swiderski, Andy D. Perkins, Bindu Nanduri, David R. Smith, Brandi B. Karisch, William B. Epperson, J. R. Blanton
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0246352

Mistreatment of newborns after childbirth in health facilities in Nepal: Results from a prospective cohort observational study
Cited by: 5
Author(s): K C Ashish, Mohammed Moinuddin, Mary V. Kinney, Emma Sacks, Rejina Gurung, Avinash K Sunny, Pratiksha Bhattarai, Srijana Sharma, Mats Målqvist
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0239938

Severity of bovine tuberculosis is associated with innate immune-biased transcriptional signatures of whole blood in early weeks after experimental Mycobacterium bovis infection
Cited by: 6
Author(s): Jayne E Wiarda, Paola M. Boggiatto, Darrell O. Bayles, W. Ray Waters, Tyler C. Thacker, Mitchell V. Palmer
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0257305

Effects of blood urea nitrogen independent of the estimated glomerular filtration rate on the development of anemia in non-dialysis chronic kidney disease: The results of the KNOW-CKD study
Cited by: 4
Author(s): Hyo Jin Kim, Tae Eun Kim, Miyeun Han, Yongin Yi, Jong Cheol Jeong, Ho Jun Chin, Sang Heon Song, Joongyub Lee, Kyu‐Beck Lee, Suah Sung, Seung Hyeok Han, Eun Young Seong, Curie Ahn, Kook‐Hwan Oh, Dong‐Wan Chae
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0251732

Phlpp1 is induced by estrogen in osteoclasts and its loss in Ctsk-expressing cells does not protect against ovariectomy-induced bone loss
Cited by: 2
Author(s): Marcelline K. Hanson, Ismael Y. Karkache, David H. H. Molstad, Andrew Norton, Kim C. Mansky, Elizabeth W. Bradley
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pgen.1009625

Light affects behavioral despair involving the clock gene Period 1
Cited by: 16
Author(s): Iwona Olejniczak, Jürgen A. Ripperger, Federica Sandrelli, Anna Schnell, Laureen Mansencal-Strittmatter, Katrin S. Wendrich, Ka Yi Hui, Andrea Brenna, Naïla Ben Fredj, Urs Albrecht
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0240178

Occurrence of Brucella ceti in striped dolphins from Italian Seas
Cited by: 14
Author(s): Giuliano Garofolo, A. Petrella, Giuseppe Lucifora, Gabriella Di Francesco, Giovanni Di Guardo, Alessandra Pautasso, Barbara Iulini, Katia Varello, Federica Giorda, Maria Goria, Alessandro Dondo, Simona Zoppi, Cristina Esmeralda Di Francesco, Stefania Giglio, Furio Ferringo, Luigina Serrecchia, Mattia Anna Rita Ferrantino, Katiuscia Zilli, Anna Janowicz, Manuela Tittarelli, Walter Mignone, Cristina Casalone, Carla Grattarola
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0232644

TargetDB: A target information aggregation tool and tractability predictor
Cited by: 9
Author(s): Stéphane De Cesco, John B. Davis, P.E. Brennan
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pcbi.1009261

Interspike interval correlations in neuron models with adaptation and correlated noise
Cited by: 4
Author(s): Lukas Ramlow, Benjamin Lindner
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0234104

Emojis influence autobiographical memory retrieval from reading words: An fMRI-based study
Cited by: 14
Author(s): Christos Chatzichristos, Manuel Morante, Nikolaos Andreadis, Eleftherios Kofidis, Yiannis Kopsinis, Sergios Theodoridis
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0230458

Cultivar-specific nutritional status of potato (Solanum tuberosum L.) crops
Cited by: 12
Author(s): Zonlehoua Coulibali, Athyna N. Cambouris, Léon‐Étienne Parent
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0253219

Identify specific gene pairs for subarachnoid hemorrhage based on wavelet analysis and genetic algorithm
Cited by: 0
Author(s): Pengcheng Zhao, Shaonian Xu, Zhenshan Huang, Peng Deng, Yongming Zhang
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pgen.1008840

The kinase Isr1 negatively regulates hexosamine biosynthesis in S. cerevisiae
Cited by: 3
Author(s): Emma B Alme, Erica Stevenson, Nevan J. Krogan, Danielle L. Swaney, David P. Toczyski
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0253340

Placental DNA methylation changes and the early prediction of autism in full-term newborns
Cited by: 11
Author(s): Ray O. Bahado‐Singh, Sangeetha Vishweswaraiah, Buket Aydas, Uppala Radhakrishna
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0257686

Measuring information flux between social media and stock prices with Transfer Entropy
Cited by: 4
Author(s): Román A. Mendoza-Urdiales, Andrés García-Medina, José Antonio Núñez Mora
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pcbi.1008601

Estimating and interpreting secondary attack risk: Binomial considered biased
Cited by: 10
Author(s): Yushuf Sharker, Eben Kenah
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0243936

A prospective study to explore the relationship between MTHFR C677T genotype, physiological folate levels, and postpartum psychopathology in at-risk women
Cited by: 4
Author(s): Emily Morris, Catriona Hippman, Arianne Albert, Caitlin Slomp, Angela Inglis, Prescilla Carrion, Rolan Batallones, Heather Andrighetti, Colin Ross, Roger Dyer, William G. Honer, Jehannine Austin
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0246719

Interactive effects of discharge reduction and fine sediments on stream biofilm metabolism
Cited by: 3
Author(s): Ana Victoria Pérez-Calpe, Aitor Larrañaga, Daniel von Schiller
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0226985

What nature separated, and human joined together: About a spontaneous hybridization between two allopatric dogwood species (Cornus controversa and C. alternifolia)
Cited by: 3
Author(s): Barbara Gawrońska, Maria Morozowska, Katarzyna Nuc, Piotr Kosiński, Ryszard Słomski
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0225064

Arabidopsis TRM5 encodes a nuclear-localised bifunctional tRNA guanine and inosine-N1-methyltransferase that is important for growth
Cited by: 14
Author(s): Qianqian Guo, Pei Qin Ng, Shanshan Shi, Diwen Fan, Jun Li, Jing Zhao, Hua Wang, Rakesh David, Parul Mittal, Quang Trung, Ralph Bock, Ming Zhao, Wenbin Zhou, Iain Searle
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pmed.1003368

Qualitative process evaluation from a complex systems perspective: A systematic review and framework for public health evaluators
Cited by: 45
Author(s): Elizabeth McGill, Dalya Marks, Vanessa Er, Tarra L. Penney, Mark Petticrew, Matt Egan
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0252691

Industrialization as a source of heavy metals and antibiotics which can enhance the antibiotic resistance in wastewater, sewage sludge and river water
Cited by: 42
Author(s): Jakub Hubeny, Monika Harnisz, Ewa Korzeniewska, Martyna Buta, W. Zieliński, Damian Rolbiecki, Joanna Giebułtowicz, Grzegorz Nałęcz‐Jawecki, Grażyna Płaza
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1008379

Inferring latent temporal progression and regulatory networks from cross-sectional transcriptomic data of cancer samples
Cited by: 12
Author(s): Xiaoqiang Sun, Ji Zhang, Qing Nie
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pmed.1003436

Induction of labour at 41 weeks or expectant management until 42 weeks: A systematic review and an individual participant data meta-analysis of randomised trials
Cited by: 23
Author(s): Mårten Alkmark, Judit K. J. Keulen, Joep C. Kortekaas, Christina Bergh, Jeroen van Dillen, Ruben G. Duijnhoven, Henrik Hagberg, Ben Willem J. Mol, Mattias Molin, Joris A. M. van der Post, Sissel Saltvedt, Anna‐Karin Wikström, Ulla‐Britt Wennerholm, Esteriek de Miranda
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0224887

Carbonate production of Micronesian reefs suppressed by thermal anomalies and Acanthaster as sea-level rises
Cited by: 8
Author(s): Robert van Woesik, Christopher William Cacciapaglia
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pgen.1008647

A fly model establishes distinct mechanisms for synthetic CRISPR/Cas9 sex distorters
Cited by: 35
Author(s): Barbara Fasulo, Angela Meccariello, Maya Morgan, Carl Borufka, Philippos Aris Papathanos, Nikolai Windbichler
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pmed.1003566

Dynamics of sputum conversion during effective tuberculosis treatment: A systematic review and meta-analysis
Cited by: 9
Author(s): Claire Calderwood, James P. Wilson, Katherine Fielding, Rebecca Harris, Aaron S Karat, Raoul Mansukhani, Jane Falconer, Malin Bergström, S.D. Johnson, Nicky McCreesh, Edward J M Monk, Jasantha Odayar, P. J. Scott, Sarah A. Stokes, Hannah Theodorou, David Moore
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pntd.0008270

Impact of tiny targets on Glossina fuscipes quanzensis, the primary vector of human African trypanosomiasis in the Democratic Republic of the Congo
Cited by: 26
Author(s): Iñaki Tirados, Andrew Hope, Richard Selby, Fabrice Mpembelé, Erick Mwamba Miaka, Marleen Boelaert, Mike Lehane, Stephen J. Torr, Michelle C. Stanton
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pntd.0009579

Effect of habitat fragmentation on rural house invasion by sylvatic triatomines: A multiple landscape-scale approach
Cited by: 11
Author(s): Miriam Cardozo, Federico Gastón Fiad, Liliana Crocco, David Eladio Gorla
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0244142

The three NADH dehydrogenases of Pseudomonas aeruginosa: Their roles in energy metabolism and links to virulence
Cited by: 8
Author(s): Teri N. Hreha, Sara Foreman, Ana E. Duran-Pinedo, Alexander Morris, Patricia Díaz‐Rodríguez, J. Andrew Jones, Kristina Ferrara, Anaïs Bourges, Lauren Rodriguez, Mattheos Koffas, Mariah S. Hahn, Alan R. Hauser, Blanca Barquera
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1009735

Chromoanagenesis from radiation-induced genome damage in Populus
Cited by: 8
Author(s): Weier Guo, Luca Comai, Isabelle Henry
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pmed.1003778

Effectiveness and costs associated with a lay counselor–delivered, brief problem-solving mental health intervention for adolescents in urban, low-income schools in India: 12-month outcomes of a randomized controlled trial
Cited by: 11
Author(s): Kanika Malik, Daniel Michelson, Aoife Doyle, Helen A. Weiss, Giulia Greco, Rooplata Sahu, Eric James, Sonal Mathur, Paulomi M. Sudhir, Michael King, Pim Cuijpers, Bruce F. Chorpita, Christopher G. Fairburn, Vikram Patel
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0234714

Prostatic hyperplasia: Vascularization, hemodynamic and hormonal analysis of dogs treated with finasteride or orchiectomy
Cited by: 4
Author(s): Daniel de Souza Ramos Angrimani, Maria Claudia Pereda Francischini, Maíra Morales Brito, Camila Infantosi Vannucchi
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pmed.1003188

Ambient air pollution and cause-specific risk of hospital admission in China: A nationwide time-series study
Cited by: 91
Author(s): Jianfeng Gu, Ying Shi, Yifang Zhu, Ning Chen, Haibo Wang, Zongjiu Zhang, Ting Chen
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0253859

Position effects of 22q13 rearrangements on candidate genes in Phelan-McDermid syndrome
Cited by: 8
Author(s): Sujata Srikanth, Lavanya Jain, Cinthya J. Zepeda-Mendoza, Lauren Cascio, Kelly A. Jones, Rini Pauly, Barb DuPont, Curtis Rogers, Sara M. Sarasua, Katy Phelan, Cynthia C. Morton, Luigi Boccuto
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pmed.1003149

Predicting and elucidating the etiology of fatty liver disease: A machine learning modeling and validation study in the IMI DIRECT cohorts
Cited by: 43
Author(s): Naeimeh Atabaki‐Pasdar, Mattias Ohlsson, Ana Viñuela, Francesca Frau, Hugo Pomares-Millan, Mark Haid, Angus G. Jones, E. Louise Thomas, Robert W. Koivula, Azra Kurbasic, Pascal M. Mutie, Hugo Fitipaldi, Juan Carlos Delgado Fernández, Adem Y. Dawed, G Giordano, Ian Forgie, Timothy J. McDonald, Femke Rutters, Henna Cederberg, Elizaveta Chabanova, Matilda Dale, Federico De Masi, Cecilia Engel Thomas, Kristine H. Allin, Torben Hansen, Alison Heggie, Mun Gwan Hong, Petra Elders, Gwen Kennedy, Tarja Kokkola, Helle Pedersen, Anubha Mahajan, Donna McEvoy, François Pattou, Violeta Raverdy, Ragna S. Häussler, Sapna Sharma, Henrik S. Thomsen, Jagadish Vangipurapu, Henrik Vestergaard, Leen M. ′t Hart, Jerzy Adamski, Petra B. Musholt, Søren Brage, Søren Brunak, Emmanouil T. Dermitzakis, Gary Frost, Markku Laakso, Oluf Pedersen, Martin Ridderstråle, Hartmut Ruetten, Andrew T. Hattersley, Mark Walker, Joline W.J. Beulens, Andrea Mari, Jochen M. Schwenk, Ramneek Gupta, Mark McCarthy, Ewan R. Pearson, Jimmy D. Bell, Imre Pávó, Paul W. Franks
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pgen.1008882

Maize adaptation across temperate climates was obtained via expression of two florigen genes
Cited by: 23
Author(s): Sara Castelletti, Aude Coupel‐Ledru, Ítalo Stefanine Correia Granato, Carine Palaffre, Llorenç Cabrera‐Bosquet, Chiara Tonelli, Stéphane Nicolas, François Tardieu, Claude Welcker, Lucio Conti
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pcbi.1009296

Multiscale representations of community structures in attractor neural networks
Cited by: 4
Author(s): Tatsuya Haga, Tomoki Fukai
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pmed.1003765

Impact of color-coded and warning nutrition labelling schemes: A systematic review and network meta-analysis
Cited by: 62
Author(s): Jieqiong Song, Mhairi K. Brown, Monique Tan, Graham A. MacGregor, Jacqui Webster, Norm R.C. Campbell, Kathy Trieu, Cliona Ní Mhurchú, Laura K. Cobb, Feng J He
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0249521

Effects of supplemental feeding on the fecal bacterial communities of Rocky Mountain elk in the Greater Yellowstone Ecosystem
Cited by: 9
Author(s): Claire E. Couch, Benjamin L. Wise, Brandon M. Scurlock, Jared D. Rogerson, Rebecca K. Fuda, Eric K. Cole, Kimberly E. Szcodronski, Adam J. Sepulveda, Patrick R. Hutchins, Paul C. Cross
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1008476

Photodamage repair pathways contribute to the accurate maintenance of the DNA methylome landscape upon UV exposure
Cited by: 15
Author(s): Stéfanie Graindorge, Valérie Cognat, Philippe Johann to Berens, Jérôme Mutterer, Jean Molinier
Software Mentions: 3
Published: almost 7 years ago