10.1371/journal.pgen.1009600

Antagonistic fungal enterotoxins intersect at multiple levels with host innate immune defences
Cited by: 10
Author(s): Xing Zhang, Benjamin W. Harding, Dina Aggad, Damien Courtine, Jia‐Xuan Chen, Nathalie Pujol, Jonathan J. Ewbank
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1008391

Using B cell receptor lineage structures to predict affinity
Cited by: 11
Author(s): D. Ralph, F. A. Matsen
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0240693

Inside the decentralised casino: A longitudinal study of actual cryptocurrency gambling transactions
Cited by: 6
Author(s): Oliver James Scholten, David Zendle, James Alfred Walker
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pgen.1008462

High expression in maize pollen correlates with genetic contributions to pollen fitness as well as with coordinated transcription from neighboring transposable elements
Cited by: 25
Author(s): Cedar Warman, Kaushik Panda, Zuzana Vejlupkova, S. Hokin, Erica Unger-Wallace, Rex A. Cole, Antony M. Chettoor, Duo Jiang, Erik Vollbrecht, Evans Mulenga, R. Keith Slotkin, John E. Fowler
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0257686

Measuring information flux between social media and stock prices with Transfer Entropy
Cited by: 4
Author(s): Román A. Mendoza-Urdiales, Andrés García-Medina, José Antonio Núñez Mora
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0243936

A prospective study to explore the relationship between MTHFR C677T genotype, physiological folate levels, and postpartum psychopathology in at-risk women
Cited by: 4
Author(s): Emily Morris, Catriona Hippman, Arianne Albert, Caitlin Slomp, Angela Inglis, Prescilla Carrion, Rolan Batallones, Heather Andrighetti, Colin Ross, Roger Dyer, William G. Honer, Jehannine Austin
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pcbi.1009162

Detecting behavioural changes in human movement to inform the spatial scale of interventions against COVID-19
Cited by: 18
Author(s): Hamish Gibbs, Emily Nightingale, Yang Liu, James Cheshire, León Danon, Liam Smeeth, Carl A. B. Pearson, Chris Grundy, Adam J. Kucharski, Rosalind M Eggo
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0224448

Understanding allergic multimorbidity within the non-eosinophilic interactome
Cited by: 10
Author(s): Daniel Aguilar, Nathanaël Lemonnier, Gerard H. Koppelman, Erik Melén, Baldo Oliva, Mariona Pinart, Stefano Guerra, Jean Bousquet, Josep M. Antó
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0235153

A simple strategy to enhance the speed of protein secondary structure prediction without sacrificing accuracy
Cited by: 5
Author(s): Sheng Hung Juan, Teng Ruei Chen, Wei-Cheng Lo
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0243684

Effects of ploidy and salmonid alphavirus infection on the skin and gill microbiome of Atlantic salmon (Salmo salar)
Cited by: 19
Author(s): Roger Brown, Lindsey Moore, Amir Mani, Sonal Patel, Irene Salinas
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0240252

The effects of language and emotionality of stimuli on vocabulary learning
Cited by: 8
Author(s): Candice Frances, Angela de Bruin, Jon Andoni Duñabeitia
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pcbi.1007996

A mathematical model for persistent post-CSD vasoconstriction
Cited by: 3
Author(s): Shixin Xu, Junbiao Chang, C. C. Chow, K. C. Brennan, Huaxiong Huang
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1008960

Model guided trait-specific co-expression network estimation as a new perspective for identifying molecular interactions and pathways
Cited by: 1
Author(s): Juho A. J. Kontio, Tanja Pyhäjärvi, Mikko J. Sillanpää
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0225064

Arabidopsis TRM5 encodes a nuclear-localised bifunctional tRNA guanine and inosine-N1-methyltransferase that is important for growth
Cited by: 14
Author(s): Qianqian Guo, Pei Qin Ng, Shanshan Shi, Diwen Fan, Jun Li, Jing Zhao, Hua Wang, Rakesh David, Parul Mittal, Quang Trung, Ralph Bock, Ming Zhao, Wenbin Zhou, Iain Searle
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0245252

Breast self-examination practice and its determinants among women in Ethiopia: A systematic review and meta-analysis
Cited by: 14
Author(s): Yordanos Gizachew Yeshitila, Getachew Mullu Kassa, Selamawit Gebeyehu, Peter Memiah, Melaku Desta
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0254744

The boundary-spanning mechanisms of Nobel Prize winning papers
Cited by: 18
Author(s): Yakub Sebastian, Chaomei Chen
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0229456

Repeatability of flatfish reflex impairment assessments based on video recordings
Cited by: 3
Author(s): Sven Sebastian Uhlmann, Noëlle Yochum, Bart Ampe
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0237325

Exposure assessment of adults living near unconventional oil and natural gas development and reported health symptoms in southwest Pennsylvania, USA
Cited by: 9
Author(s): Hannah N. Blinn, Ryan M. Utz, Lydia H. Greiner, David R. Brown
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0251905

Which public health interventions are effective in reducing morbidity, mortality and health inequalities from infectious diseases amongst children in low- and middle-income countries (LMICs): An umbrella review
Cited by: 7
Author(s): E Besnier, Katie Thomson, Donata Stonkute, Talal Mohammad, Nasima Akhter, Adam Todd, Magnus Rom Jensen, Astrid Kilvik, Clare Bambra
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0228976

Seasonal and social factors associated with spacing in a wild territorial electric fish
Cited by: 7
Author(s): Lucía Zubizarreta, Laura Quintana, Daniel Hernández, Franco Teixeira de Mello, Mariana Meerhoff, Renato Massaaki Honji, Renata Guimarães Moreira, Ana C. Silva
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1008965

Replication of the Salmonella Genomic Island 1 (SGI1) triggered by helper IncC conjugative plasmids promotes incompatibility and plasmid loss
Cited by: 18
Author(s): Kévin Huguet, Nicolas Rivard, Daniel Garneau, Jason Palanee, Vincent Burrus
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0238430

The social network of medical case managers, housing providers, and health department staff in the Ryan White HIV/AIDS Program: A Midwest case study
Cited by: 5
Author(s): Joseph S. Lightner, Jamie Shank, Ryan McBain, Tyler Prochnow
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0257254

Knocking out TMEM38B in human foetal osteoblasts hFOB 1.19 by CRISPR/Cas9: A model for recessive OI type XIV
Cited by: 4
Author(s): Laura Leoni, Francesca Tonelli, Roberta Besio, Roberta Gioia, Francesco Moccia, Antonio Rossi, Antonella Forlino
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0224632

Mitochondrial dysfunction in rheumatoid arthritis: A comprehensive analysis by integrating gene expression, protein-protein interactions and gene ontology data
Cited by: 22
Author(s): Venugopal Panga, Ashwin Adrian Kallor, Arunima Nair, Shilpa Harshan, Srivatsan Raghunathan
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0250518

LPCAT1-TERT fusions are uniquely recurrent in epithelioid trophoblastic tumors and positively regulate cell growth
Cited by: 4
Author(s): Gavin R. Oliver, Sofia Marcano-Bonilla, Jonathan Quist, Ezequiel J. Tolosa, Eriko Iguchi, Amy A. Swanson, Nicole L. Hoppman, Tanya L. Schwab, Ashley N. Sigafoos, Naresh Prodduturi, Jesse S. Voss, Shannon M. Knight, Jin Zhang, Numrah Fadra, Raúl Urrutia, Michael A. Zimmerman, Jan B. Egan, Anthony G. Bilyeu, Jin Jen, Ema Veras, Remaa Al-Safi, Matthew S. Block, Sarah Kerr, Martín E. Fernández-Zapico, John K. Schoolmeester, Eric W. Klee
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0228974

Parental investment and immune dynamics in sex-role reversed pipefishes
Cited by: 4
Author(s): Isabel Keller, Olivia Roth
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0249313

Fire Acupuncture versus conventional acupuncture to treat spasticity after stroke: A systematic review and meta-analysis
Cited by: 10
Author(s): Xuan Qiu, Yaowen Gao, Zhaoxu Zhang, Sijia Cheng, Shuangmei Zhang
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1008287

An analysis of tissue-specific alternative splicing at the protein level
Cited by: 49
Author(s): José Manuel Rodriguez, Fernando Campo del Pozo, Tomàs Di Domenico, Jesús Vázquez, Michael L. Tress
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0242972

Genetic variability of bioactive compounds and selection for nutraceutical quality in kola [Cola nitida (Vent) Schott. and Endl.]
Cited by: 13
Author(s): Daniel Nyadanu, S. T. Lowor, Abraham Akpertey, Dèdéou Apocalypse Tchokponhoué, P. Pobee, Jerome Agbesi Dogbatse, Daniel Okyere, Frederick Amon-Armah, M. Brako-Marfo
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pcbi.1008852

Personalized computational model quantifies heterogeneity in postprandial responses to oral glucose challenge
Cited by: 9
Author(s): Balázs Erdős, Bart van Sloun, Michiel E. Adriaens, Shauna D. O’Donovan, Dominique Langin, Arne Astrup, Ellen E. Blaak, Ilja C. W. Arts, Natal A. W. van Riel
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pgen.1009446

Critical role of the BAF chromatin remodeling complex during murine neural crest development
Cited by: 13
Author(s): Kathleen Wung Bi-Lin, Pratap Veerabrahma Seshachalam, Tran Tuoc, Anastassia Stoykova, Sujoy Ghosh, Manvendra K. Singh
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pgen.1009580

Genetics of white color and iridophoroma in “Lemon Frost” leopard geckos
Cited by: 10
Author(s): Longhua Guo, Joshua S. Bloom, Steve Sykes, Elaine Huang, Zain Kashif, Elise Pham, Katarina Ho, Ana Alcaraz, Xinshu Xiao, Sandra Duarte‐Vogel, Leonid Kruglyak
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1008022

Depth in convolutional neural networks solves scene segmentation
Cited by: 15
Author(s): Noor Seijdel, Nikos Tsakmakidis, E.H.F. de Haan, Sander M. Bohté, H. Steven Scholte
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1009318

Ush regulates hemocyte-specific gene expression, fatty acid metabolism and cell cycle progression and cooperates with dNuRD to orchestrate hematopoiesis
Cited by: 10
Author(s): Jonathan Lenz, Robert Liefke, Julianne Funk, Samuel Shoup, Andrea Nist, Thorsten Stiewe, Robert A. Schulz, Yumiko Tokusumi, Lea Albert, Hartmann Raifer, Klaus Förstemann, Olalla Vázquez, Tsuyoshi Tokusumi, Nancy Fossett, Alexander Brehm
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pgen.1008801

Dynamic genetic architecture of yeast response to environmental perturbation shed light on origin of cryptic genetic variation
Cited by: 14
Author(s): Yanjun Zan, Örjan Carlborg
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0236684

Distinct patterns of activity in individual cortical neurons and local networks in primary somatosensory cortex of mice evoked by square-wave mechanical limb stimulation
Cited by: 2
Author(s): Mischa V Bandet, Bin Dong, Ian R. Winship
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0256784

Immunometabolic signatures predict risk of progression to sepsis in COVID-19
Cited by: 19
Author(s): Ana Sofía Herrera-Van Oostdam, Julio Enrique Castañeda-Delgado, Juan José Oropeza-Valdez, Juan Carlos Borrego, Joel Monárrez‐Espino, Jiamin Zheng, Rupasri Mandal, Lun Zhang, Elizabeth Soto-Guzmán, Julio César Fernández-Ruiz, Fátima de Lourdes Ochoa-González, Flor María Trejo Medinilla, Jesús Adrián López, David S. Wishart, José Antonio Enciso-Moreno, Yamilé López‐Hernández
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0222232

A half-century of changes in migratory landbird numbers along coastal Massachusetts
Cited by: 3
Author(s): Matthew Kamm, Trevor L. Lloyd-Evans, Maina C. Handmaker, J. Michael Reed
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pcbi.1009174

Spatial and temporal invasion dynamics of the 2014–2017 Zika and chikungunya epidemics in Colombia
Cited by: 5
Author(s): Kelly Charniga, Zulma M. Cucunubá, Marcela Mercado, Franklyn Prieto, Martha Ospina, Pierre Nouvellet, Christl A. Donnelly
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0251565

The protein and volatile components of trail mucus in the Common Garden Snail, Cornu aspersum
Cited by: 7
Author(s): Kaylene R. Ballard, Anne Klein, R. Andrew Hayes, Tianfang Wang, Scott F. Cummins
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1009416

Integration, coincidence detection and resonance in networks of spiking neurons expressing Gamma oscillations and asynchronous states
Cited by: 6
Author(s): Eduarda Susin, Alain Destexhe
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pcbi.1007578

Accurate prediction of kinase-substrate networks using knowledge graphs
Cited by: 19
Author(s): Vít Nováček, Gavin McGauran, David Matallanas, Alfonso Blanco, Piero Conca, Emir Muñoz, Luca Costabello, Kamalesh Kanakaraj, Zeeshan Nawaz, Brian Walsh, Sameh K. Mohamed, Pierre-Yves Vandenbussche, Colm J. Ryan, Walter Kölch, Dirk Fey
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0253857

A systematic review assessing the quality of patient reported outcomes measures in dry eye diseases
Cited by: 7
Author(s): Alberto Recchioni, Olalekan Lee Aiyegbusi, Samantha Cruz-Rivera, Saaeha Rauz, Anita Slade
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pgen.1009556

CRISPR/Cas9 modified An. gambiae carrying kdr mutation L1014F functionally validate its contribution in insecticide resistance and combined effect with metabolic enzymes
Cited by: 23
Author(s): Linda Grigoraki, Ruth Cowlishaw, Tony Nolan, Martin J. Donnelly, Gareth Lycett, Hilary Ranson
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0231120

Orchard layout and plant traits influence fruit yield more strongly than pollinator behaviour and density in a dioecious crop
Cited by: 4
Author(s): Angela Peace, David E. Pattemore, Melissa Broussard, Dilini Fonseka, Nathan Tomer, Nilsa A. Bosque‐Pérez, David W. Crowder, Allison K. Shaw, Linley K. Jesson, Brad G. Howlett, Mateusz Jochym, Jing Li
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0249951

Development and validation of a set of novel and robust 4-lncRNA-based nomogram predicting prostate cancer survival by bioinformatics analysis
Cited by: 6
Author(s): Peng Zhang, Xiaodong Tan, Daoqiang Zhang, Qiyong Gong, Xuefeng Zhang
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1008308

OpenAWSEM with Open3SPN2: A fast, flexible, and accessible framework for large-scale coarse-grained biomolecular simulations
Cited by: 31
Author(s): Wei Lu, Carlos Bueno, Nicholas P. Schafer, Joshua Moller, Shuang Jin, Xun Chen, Mingchen Chen, Xinyu Gu, Aram Davtyan, Juan J. de Pablo, Peter G. Wolynes
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pgen.1009370

Hybrid seed incompatibility in Capsella is connected to chromatin condensation defects in the endosperm
Cited by: 13
Author(s): Katarzyna Dziasek, Lauriane Simon, Clément Lafon‐Placette, Benjamin Laenen, Cecilia Wärdig, Juan Santos‐González, Tanja Slotte, Claudia Köhler
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pgen.1009252

Genome-scale reconstruction of Gcn4/ATF4 networks driving a growth program
Cited by: 4
Author(s): Rajalakshmi Srinivasan, Adhish Walvekar, Zeenat Rashida, Aswin Sai Narain Seshasayee, Sunil Laxman
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pgen.1009086

miRNA-mediated loss of m6A increases nascent translation in glioblastoma
Cited by: 20
Author(s): John P. Zepecki, David Karambizi, J. Eduardo Fajardo, Kristin M. Snyder, Charlotte Guetta-Terrier, Oliver Y. Tang, Jia-Shu Chen, Atom Sarkar, András Fiser, Steven Toms, Nikos Tapinos
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pgen.1008720

Eliciting priors and relaxing the single causal variant assumption in colocalisation analyses
Cited by: 144
Author(s): Chris Wallace
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1007455

A computational study on the role of glutamate and NMDA receptors on cortical spreading depression using a multidomain electrodiffusion model
Cited by: 18
Author(s): Austin Tuttle, Jorge J. Riera, Yoichiro Mori
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pcbi.1007722

Insight into the protein solubility driving forces with neural attention
Cited by: 25
Author(s): Daniele Raimondi, Gabriele Orlando, Piero Fariselli, Yves Moreau
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1009335

Ankyrin repeats in context with human population variation
Cited by: 4
Author(s): Javier S. Utgés, Maxim I. Tsenkov, Noah J. M. Dietrich, Stuart A. MacGowan, Geoffrey J. Barton
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0254617

Tuna behaviour at anchored FADs inferred from Local Ecological Knowledge (LEK) of pole-and-line tuna fishers in the Maldives
Cited by: 4
Author(s): Ahmed Riyaz Jauharee, Manuela Capello, Monique Simier, Fabien Forget, M. Shiham Adam, Laurent Dagorn
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pgen.1009687

Reduction of Derlin activity suppresses Notch-dependent tumours in the C. elegans germ line
Cited by: 2
Author(s): Ramya Singh, Ryan B Smit, Xin Wang, Chris Wang, Hilary Racher, Dave Hansen
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0240899

Modified-Chronic Disease Score (M-CDS): Predicting the individual risk of death using drug prescriptions
Cited by: 10
Author(s): Marica Iommi, Simona Rosa, Michele Fusaroli, Paola Rucci, Maria Pia Fantini, Elisabetta Poluzzi
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pgen.1008582

Roles of Candida albicans Mig1 and Mig2 in glucose repression, pathogenicity traits, and SNF1 essentiality
Cited by: 32
Author(s): Katherine Lagree, Carol A. Woolford, Manning Y. Huang, Gemma E. May, C. Joel McManus, Norma V. Solis, Scott G. Filler, Aaron P. Mitchell
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pgen.1008949

The Paramecium histone chaperone Spt16-1 is required for Pgm endonuclease function in programmed genome rearrangements
Cited by: 11
Author(s): Augustin de Vanssay, Amandine Touzeau, Olivier Arnaiz, Andrea Frapporti, Jamie Phipps, Sandra Duharcourt
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1008941

A point mutation decouples the lipid transfer activities of microsomal triglyceride transfer protein
Cited by: 16
Author(s): Meredith H. Wilson, Sujith Rajan, Aidan Danoff, Richard White, Monica R. Hensley, Vanessa H. Quinlivan, Rosario Recacha, James H. Thierer, Frederick J. Tan, Elisabeth M Busch-Nentwich, Lloyd W. Ruddock, M. Mahmood Hussain, Steven A. Farber
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1008749

Comprehensive analysis of cancer breakpoints reveals signatures of genetic and epigenetic contribution to cancer genome rearrangements
Cited by: 10
Author(s): Kseniia Cheloshkina, Maria Poptsova
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pcbi.1007849

A mechanistic model of the BLADE platform predicts performance characteristics of 256 different synthetic DNA recombination circuits
Cited by: 2
Author(s): Jack Bowyer, Chloe Ding, Benjamin H. Weinberg, Wilson Wong, Declan G. Bates
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0256975

Lens fluorescence and skin fluorescence in the Copenhagen Twin Cohort Eye Study: Covariates and heritability
Cited by: 0
Author(s): Jakob Bjerager, Sami Dabbah, Mohamed Belmouhand, S. P. Rothenbuehler, Birgit Sander, Michael Larsen
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pgen.1009245

bsAS, an antisense long non-coding RNA, essential for correct wing development through regulation of blistered/DSRF isoform usage
Cited by: 5
Author(s): Sílvia Pérez-Lluch, Cecília C. Klein, Alessandra Breschi, Marina Ruiz-Romero, Amaya Abad, Emilio Palumbo, Lyazzat Bekish, Carme Arnan, Roderic Guigó
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pcbi.1008697

FastTrack: An open-source software for tracking varying numbers of deformable objects
Cited by: 25
Author(s): Benjamin Gallois, Raphaël Candelier
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0258515

How does individualised physiotherapy work for people with low back pain? A Bayesian Network analysis using randomised controlled trial data
Cited by: 3
Author(s): Bernard X. W. Liew, Jon Ford, Marco Scutari, Andrew J. Hahne
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0236836

Time-series cardiovascular risk factors and receipt of screening for breast, cervical, and colon cancer: The Guideline Advantage
Cited by: 2
Author(s): Aixia Guo, Bettina F. Drake, Yosef Khan, James R. Langabeer, Randi E. Foraker
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1008379

Inferring latent temporal progression and regulatory networks from cross-sectional transcriptomic data of cancer samples
Cited by: 12
Author(s): Xiaoqiang Sun, Ji Zhang, Qing Nie
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0223992

To tweet or not to tweet, that is the question: A randomized trial of Twitter effects in medical education
Cited by: 10
Author(s): Lauren A. Maggio, Todd C. Leroux, Anthony R. Artino
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0229661

Measuring childhood maltreatment: Psychometric properties of the Norwegian version of the Maltreatment and Abuse Chronology of Exposure (MACE) scale
Cited by: 11
Author(s): Roar Fosse, Dag Vegard Skjelstad, Inga Schalinski, Dorothea Thekkumthala, Thomas Elbert, Chris Margaret Aanondsen, Hanne Klæboe Greger, Thomas Jozefiak
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pgen.1009215

Bud23 promotes the final disassembly of the small subunit Processome in Saccharomyces cerevisiae
Cited by: 12
Author(s): Joshua J. Black, Richa Sardana, Ezzeddine W. Elmir, Arlen Johnson
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pcbi.1008835

Choice of method of place cell classification determines the population of cells identified
Cited by: 6
Author(s): D. M. Grijseels, Kira Shaw, Caswell Barry, Catherine N. Hall
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0255799

Substance use disorders and suicidality in youth: A systematic review and meta-analysis with a focus on the direction of the association
Cited by: 16
Author(s): Charlie Rioux, Anne-Sophie Huet, Natalie Castellanos‐Ryan, Laurianne Fortier, Marie-Ève Blanc, Stéphanie Hamaoui, Marie‐Claude Geoffroy, Johanne Renaud, Jean R. Séguin
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1009384

Characterization of the NiRAN domain from RNA-dependent RNA polymerase provides insights into a potential therapeutic target against SARS-CoV-2
Cited by: 15
Author(s): Abhisek Dwivedy, Richard Mariadasse, Mohammed Ahmad, Sanjoy Chakraborty, Deepsikha Kar, Satish Tiwari, Sankar Bhattacharyya, Sudipta Sonar, Shailendra Mani, Prafullakumar Tailor, Tanmay Majumdar, Jeyaraman Jeyakanthan, B.K. Biswal
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0248990

Smoking prevalence, core/periphery network positions, and peer influence: Findings from five datasets on US adolescents and young adults
Cited by: 0
Author(s): Cheng Wang
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0223203

Unexpected predicted length variation for the coding sequence of the sleep related gene, BHLHE41 in gorilla amidst strong purifying selection across mammals
Cited by: 0
Author(s): Krishna Unadkat, Justen B. Whittall
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1008568

Rosetta design with co-evolutionary information retains protein function
Cited by: 10
Author(s): Samuel Schmitz, Moritz Ertelt, Rainer Merkl, Jens Meiler
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pgen.1008637

Transcriptional regulation of genes bearing intronic heterochromatin in the rice genome
Cited by: 23
Author(s): Nino A. Espinas, Le Ngoc Tu, Leonardo Furci, Yasuka Shimajiri, Yoshiko Harukawa, Saori Miura, Shohei Takuno, Hidetoshi Saze
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1009448

dGPredictor: Automated fragmentation method for metabolic reaction free energy prediction and de novo pathway design
Cited by: 4
Author(s): Lin Wang, Vikas Upadhyay, Costas D. Maranas
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0242880

A shotgun metagenomic investigation of the microbiota of udder cleft dermatitis in comparison to healthy skin in dairy cows
Cited by: 7
Author(s): Lisa Ekman, Elisabeth Bagge, Ann-Kristin Nyman, Karin Persson Waller, Märit Pringle, Bo Segerman
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pcbi.1009304

ZWA: Viral genome assembly and characterization hindrances from virus-host chimeric reads; a refining approach
Cited by: 1
Author(s): Nikolas Dovrolis, Katerina Kassela, Konstantinos Konstantinidis, Adamantia Kouvela, Stavroula Veletza, Ioannis Karakasiliotis
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0241754

Emergence of a novel chikungunya virus strain bearing the E1:V80A substitution, out of the Mombasa, Kenya 2017-2018 outbreak
Cited by: 9
Author(s): Fredrick Eyase, Solomon Langat, Irina Maljkovic Berry, Francis Mulwa, Albert Nyunja, James Mu, Samuel Owaka, Samson Limbaso, Victor Ofula, Hellen Koka, Edith Koskei, Joel Lutomiah, Richard G. Jarman, Rosemary Sang
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pcbi.1008864

Using the antibody-antigen binding interface to train image-based deep neural networks for antibody-epitope classification
Cited by: 17
Author(s): Daniel R. Ripoll, Sidhartha Chaudhury, Anders Wallqvist
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0234003

Inferring transportation mode from smartphone sensors: Evaluating the potential of Wi-Fi and Bluetooth
Cited by: 8
Author(s): Andreas Bjerre-Nielsen, Kelton Minor, Piotr Sapieżyński, Sune Lehmann, David Dreyer Lassen
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1009343

BEEM-Static: Accurate inference of ecological interactions from cross-sectional microbiome data
Cited by: 3
Author(s): Chenhao Li, Tamar V. Av-Shalom, Jun Wei Gerald Tan, Junmei Samantha Kwah, Kern Rei Chng, Niranjan Nagarajan
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pcbi.1007643

Heterogeneity coordinates bacterial multi-gene expression in single cells
Cited by: 13
Author(s): Yichao Han, Fuzhong Zhang
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1008380

On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo
Cited by: 10
Author(s): Charles-Elie Rabier, Vincent Berry, Marnus Stoltz, João dos Santos, Wensheng Wang, Jean-Christophe Glaszmann, Fabio Pardi, Céline Scornavacca
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pcbi.1007845

PhANNs, a fast and accurate tool and web server to classify phage structural proteins
Cited by: 44
Author(s): Adrian Cantu, Peter Salamon, Victor Seguritan, Jackson Redfield, David Salamon, Robert A. Edwards, Anca M. Segall
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0241465

What triggers online help-seeking retransmission during the COVID-19 period? Empirical evidence from Chinese social media
Cited by: 26
Author(s): Chen Luo, Yuru Li, Anfan Chen, Yulong Tang
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pcbi.1009037

XENet: Using a new graph convolution to accelerate the timeline for protein design on quantum computers
Cited by: 7
Author(s): Jack Maguire, Daniele Grattarola, Vikram Khipple Mulligan, Eugene Klyshko, Hans Melo
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pcbi.1009211

A mechanistic and data-driven reconstruction of the time-varying reproduction number: Application to the COVID-19 epidemic
Cited by: 8
Author(s): Bernard Cazelles, Clara Champagne, Benjamin Nguyen-Van-Yen, Catherine Comiskey, Elisabeta Vergu, Benjamín Roche
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0237304

A fractal kinetics SI model can explain the dynamics of COVID-19 epidemics
Cited by: 13
Author(s): Kosmas Kosmidis, Panos Macheras
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0246515

Assessing anxiety, depression and insomnia symptoms among Ebola survivors in Africa: A meta-analysis
Cited by: 15
Author(s): Jeremiah Wezenamo Acharibasam, Batholomew Chireh, Hayelom G. Menegesha
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0239450

Integrative analysis of long non-coding RNA and mRNA in broilers with valgus-varus deformity
Cited by: 10
Author(s): Hehe Tang, Yaping Guo, Zhenzhen Zhang, Zhuanjian Li, Yanhua Zhang, Yuanfang Li, Xiangtao Kang, Ruili Han
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.ppat.1009572

Immunity onset alters plant chromatin and utilizes EDA16 to regulate oxidative homeostasis
Cited by: 10
Author(s): Alonso Javier Pardal, Sophie J. M. Piquerez, Ana Dominguez-Ferreras, Lucas Frungillo, Emmanouil Mastorakis, Emma Reilly, David Latrasse, Lorenzo Concia, Selena Giménez-Ibáñez, Steven H. Spoel, Moussa Benhamed, Vardis Ntoukakis
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1007933

A crowdsourced set of curated structural variants for the human genome
Cited by: 5
Author(s): Lesley Chapman, Noah Spies, Patrick Pai, Chun Shen Lim, Andrew Carroll, Giuseppe Narzisi, Christopher M. Watson, Christos Proukakis, Wayne E. Clarke, Naoki Nariai, Eric T. Dawson, Garan Jones, Daniel Blankenberg, Christian Brueffer, Chunlin Xiao, Sree Rohit Raj Kolora, Noah Alexander, Paul Wolujewicz, Azza E. Ahmed, Graeme C. Smith, Saadlee Shehreen, Aaron M. Wenger, Marc Salit, Justin M. Zook
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0256463

Adapting the coordination of eyes and head to differences in task and environment during fully-mobile visual exploration
Cited by: 12
Author(s): John M. Franchak, Brianna McGee, Gabrielle Blanch
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0250758

Comprehensive at-arrival transcriptomic analysis of post-weaned beef cattle uncovers type I interferon and antiviral mechanisms associated with bovine respiratory disease mortality
Cited by: 9
Author(s): Matthew A. Scott, Amelia R. Woolums, Cyprianna E. Swiderski, Andy D. Perkins, Bindu Nanduri, David R. Smith, Brandi B. Karisch, William B. Epperson, J. R. Blanton
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0227244

Significance-based multi-scale method for network community detection and its application in disease-gene prediction
Cited by: 3
Author(s): Ke Hu, Xu Ju, Yun-Xia Yu, Liang Tang, Xiang Qin, Jianming Li, Yonghong Tang, Yongjun Chen, Yan Zhang
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1009351

Targeted pandemic containment through identifying local contact network bottlenecks
Cited by: 7
Author(s): Shu-Chun Yang, Priyabrata Senapati, Di Wang, Chris T. Bauch, Kimon Fountoulakis
Software Mentions: 3
Published: over 4 years ago