10.1371/journal.pcbi.1009049

Effect of cellular rearrangement time delays on the rheology of vertex models for confluent tissues
Cited by: 16
Author(s): Gonca Erdemci-Tandogan, M. Lisa Manning
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008017

Capsule networks as recurrent models of grouping and segmentation
Cited by: 34
Author(s): Adrien Doerig, Lynn Schmittwilken, Bilge Sayim, Mauro Manassi, Michael H. Herzog
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1007573

Robustness and parameter geography in post-translational modification systems
Cited by: 15
Author(s): Kee-Myoung Nam, Benjamin M. Gyori, Silviana V. Amethyst, Daniel J. Bates, Jeremy Gunawardena
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008480

A functional theory of bistable perception based on dynamical circular inference
Cited by: 8
Author(s): Pantelis Leptourgos, Vincent Bouttier, Renaud Jardri, Sophie Denève
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1008604

Post-lockdown abatement of COVID-19 by fast periodic switching
Cited by: 44
Author(s): Michelangelo Bin, Peter Y. K. Cheung, Emanuele Crisostomi, Pietro Ferraro, Hugo Lhachemi, Roderick Murray-Smith, Connor Myant, Thomas Parisini, Robert Shorten, Sebastian Stein, Lewi Stone
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1007691

Modeling binary and graded cone cell fate patterning in the mouse retina
Cited by: 10
Author(s): Kiara C. Eldred, Cameron M. Avelis, Robert J. Johnston, Elijah Roberts
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1009188

A model explaining mRNA level fluctuations based on activity demands and RNA age
Cited by: 3
Author(s): Zhongneng Xu, Shuichi Asakawa
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008714

Using deep neural networks to evaluate object vision tasks in rats
Cited by: 9
Author(s): Kasper Vinken, Hans Op de Beeck
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008130

Overlaid positive and negative feedback loops shape dynamical properties of PhoPQ two-component system
Cited by: 9
Author(s): Satyajit D. Rao, Oleg A. Igoshin
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1007550

Avoidance of non-localizable obstacles in echolocating bats: A robotic model
Cited by: 14
Author(s): Carl Bou Mansour, Elijah Koreman, Jan Steckel, Herbert Peremans, Dieter Vanderelst
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pcbi.1007405

Structural and molecular insight into the pH-induced low-permeability of the voltage-gated potassium channel Kv1.2 through dewetting of the water cavity
Cited by: 4
Author(s): Juhwan Lee, Mi Sun Kang, Sang‐Yeol Kim, Iksoo Chang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008317

Reward-predictive representations generalize across tasks in reinforcement learning
Cited by: 18
Author(s): Lucas Lehnert, Michael L. Littman, Michael J. Frank
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1007717

An in-silico human cell model reveals the influence of spatial organization on RNA splicing
Cited by: 15
Author(s): Zhaleh Ghaemi, J.R. Peterson, Martin Gruebele, Zaida Luthey‐Schulten
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1007300

A biophysical model of striatal microcircuits suggests gamma and beta oscillations interleaved at delta/theta frequencies mediate periodicity in motor control
Cited by: 15
Author(s): Julia Chartove, Michelle M. McCarthy, Benjamin Pittman-Polletta, Nancy Kopell
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008353

Modelling locust foraging: How and why food affects group formation
Cited by: 8
Author(s): Fillipe Georgiou, Jérôme Buhl, J. E. F. Green, Bishnu P. Lamichhane, Ngamta Thamwattana
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1009110

Integration of a physiologically-based pharmacokinetic model with a whole-body, organ-resolved genome-scale model for characterization of ethanol and acetaldehyde metabolism
Cited by: 7
Author(s): Leo Zhu, William Pei, Ines Thiele, Radhakrishnan Mahadevan
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008776

Age-structured non-pharmaceutical interventions for optimal control of COVID-19 epidemic
Cited by: 39
Author(s): Quentin Richard, Samuel Alizon, Marc Choisy, Mircea T. Sofonea, Ramsès Djidjou‐Demasse
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008965

Maximally efficient prediction in the early fly visual system may support evasive flight maneuvers
Cited by: 8
Author(s): Siwei Wang, Idan Segev, Alexander Borst, Stéphanie Palmer
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007997

Stochastic ordering of complexoform protein assembly by genetic circuits
Cited by: 1
Author(s): Mikkel H. Jensen, Eliza J. Morris, Hai B. Tran, Michael A. Nash, Cheemeng Tan
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1007522

DRAMS: A tool to detect and re-align mixed-up samples for integrative studies of multi-omics data
Cited by: 8
Author(s): Yi Jiang, Gina Giase, Kay Grennan, Annie W. Shieh, Yan Xia, Lide Han, Quan Wang, Qiang Wei, Rui Chen, Sihan Liu, Kevin P. White, Chao Chen, Bingshan Li, Chunyu Liu
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008602

Directed attenuation to enhance vaccine immunity
Cited by: 3
Author(s): Rustom Antia, Hasan Ahmed, James J. Bull
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1008357

Rapid prediction of crucial hotspot interactions for icosahedral viral capsid self-assembly by energy landscape atlasing validated by mutagenesis
Cited by: 2
Author(s): Ruijin Wu, Rahul Prabhu, Aysegul Ozkan, Meera Sitharam
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1008135

Modeling microbial cross-feeding at intermediate scale portrays community dynamics and species coexistence
Cited by: 29
Author(s): Chen Liao, Tong Wang, Sergei Maslov, João B. Xavier
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1007897

Immunization strategies in networks with missing data
Cited by: 18
Author(s): Samuel F. Rosenblatt, Jeffrey A. Smith, G. Robin Gauthier, Laurent Hébert‐Dufresne
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1007767

The hydrophobic effect characterises the thermodynamic signature of amyloid fibril growth
Cited by: 27
Author(s): Juami H. M. van Gils, Erik van Dijk, Alessia Peduzzo, Alexander Hofmann, Nicola Vettore, Marie P. Schützmann, Georg Groth, Halima Mouhib, Daniel E. Otzen, Alexander K. Buell, Sanne Abeln
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1007529

Transient amplifiers of selection and reducers of fixation for death-Birth updating on graphs
Cited by: 27
Author(s): Benjamin Allen, Christine Sample, Robert Jencks, James Fred Withers, Patricia Steinhagen, Lori Brizuela, Joshua Kolodny, Darren Parke, Gábor Lippner, Yulia Dementieva
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pcbi.1007705

A mathematical model describing the localization and spread of influenza A virus infection within the human respiratory tract
Cited by: 43
Author(s): Christian Quirouette, Nada P. Younis, Micaela B. Reddy, C. Beauchemin
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008783

Differential contributions of synaptic and intrinsic inhibitory currents to speech segmentation via flexible phase-locking in neural oscillators
Cited by: 8
Author(s): Benjamin Pittman-Polletta, Yangyang Wang, David A. Stanley, Charles E. Schroeder, Miles A. Whittington, Nancy Kopell
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1009217

Ergodicity-breaking reveals time optimal decision making in humans
Cited by: 3
Author(s): D. Meder, Finn Rabe, Tobias Morville, Kristoffer Hougaard Madsen, Magnus T. Koudahl, Raymond J. Dolan, Hartwig R. Siebner
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1009307

Epigenetic instability may alter cell state transitions and anticancer drug resistance
Cited by: 6
Author(s): Anshul Saini, James M. Gallo
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1008967

Antibody Watch: Text mining antibody specificity from the literature
Cited by: 2
Author(s): Chun‐Nan Hsu, Chia Hui Chang, Thamolwan Poopradubsil, Amanda Lo, Karen William, Ko‐Wei Lin, Anita Bandrowski, İbrahim Burak Özyurt, Jeffrey S. Grethe, Maryann E. Martone
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007662

Inferring a simple mechanism for alpha-blocking by fitting a neural population model to EEG spectra
Cited by: 10
Author(s): Agus Hartoyo, Peter J. Cadusch, David T. J. Liley, D. G. Hicks
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008828

Circadian rhythm shows potential for mRNA efficiency and self-organized division of labor in multinucleate cells
Cited by: 2
Author(s): Leif Zinn-Brooks, Marcus Roper
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1009103

Insights into substrate recognition and specificity for IgG by Endoglycosidase S2
Cited by: 5
Author(s): Asaminew H. Aytenfisu, Daniel Deredge, Erik H. Klontz, Jonathan J. Du, Eric J. Sundberg, Alexander D. MacKerell
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007572

Two-variable nullcline analysis of ionic general equilibrium predicts calcium homeostasis in ventricular myocytes
Cited by: 2
Author(s): David Conesa, Blas Echebarria, Angelina Peñaranda, Inma Rodríguez Cantalapiedra, Yohannes Shiferaw, Enrique Alvarez-Lacalle
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008726

Group testing as a strategy for COVID-19 epidemiological monitoring and community surveillance
Cited by: 26
Author(s): Vincent Brault, Bastien Mallein, Jean-François Rupprecht
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007566

Modeling time-varying brain networks with a self-tuning optimized Kalman filter
Cited by: 20
Author(s): David Pascucci, Maria Rubega, Gijs Plomp
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1008051

Quorum sensing via dynamic cytokine signaling comprehensively explains divergent patterns of effector choice among helper T cells
Cited by: 11
Author(s): Edward C Schrom, Simon A. Levin, Andrea L. Graham
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008103

Efficient consideration of coordinated water molecules improves computational protein-protein and protein-ligand docking discrimination
Cited by: 36
Author(s): Ryan E. Pavlovicz, Hahnbeom Park, Frank DiMaio
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1007678

In silico investigation of the mechanisms underlying atrial fibrillation due to impaired Pitx2
Cited by: 20
Author(s): Jieyun Bai, Andy Lo, Patrick Gladding, Martin K. Stiles, Vadim V. Fedorov, Jichao Zhao
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1009190

An uncertainty-based model of the effects of fixation on choice
Cited by: 6
Author(s): Zhiwei Li, Wei Ji
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1008943

Learning brain dynamics for decoding and predicting individual differences
Cited by: 3
Author(s): Joyneel Misra, Srinivas Govinda Surampudi, Manasij Venkatesh, Chirag Limbachia, Joseph F. JáJá, Luiz Pessoa
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1008855

How does Sec63 affect the conformation of Sec61 in yeast?
Cited by: 11
Author(s): Pratiti Bhadra, Lalitha Yadhanapudi, Karin Römisch, Volkhard Helms
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008035

Data-driven contact structures: From homogeneous mixing to multilayer networks
Cited by: 23
Author(s): Alberto Aleta, Guilherme Ferraz de Arruda, Yamir Moreno
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1009185

Neuron tracing and quantitative analyses of dendritic architecture reveal symmetrical three-way-junctions and phenotypes of git-1 in C. elegans
Cited by: 1
Author(s): Omer Yuval, Yael Iosilevskii, Anna Meledin, Benjamin Podbilewicz, Tom Shemesh
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007927

Measurable health effects associated with the daylight saving time shift
Cited by: 12
Author(s): Hanxin Zhang, Torsten Dahlén, Atif Ali Khan, Gustaf Edgren, Andrey Rzhetsky
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1007940

Learning gene networks underlying clinical phenotypes using SNP perturbation
Cited by: 0
Author(s): Calvin McCarter, Judie A. Howrylak, Seyoung Kim
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1008149

Similarities and differences in spatial and non-spatial cognitive maps
Cited by: 17
Author(s): Charley M. Wu, Eric Schulz, Mona M. Garvert, Björn Meder, Nicolas W. Schuck
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1007874

Simulating flow induced migration in vascular remodelling
Cited by: 5
Author(s): Ashkan Tabibian, Siavash Ghaffari, Diego A. Vargas, Hans Van Oosterwyck, Elizabeth A. V. Jones
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1008887

MAUI (MBI Analysis User Interface)—An image processing pipeline for Multiplexed Mass Based Imaging
Cited by: 31
Author(s): Alex Baranski, Idan Milo, Shirley Greenbaum, John Paul Oliveria, Dunja Mrdjen, Michael Angelo, Leeat Keren
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008538

Multiobjective optimization identifies cancer-selective combination therapies
Cited by: 9
Author(s): Otto Pulkkinen, Prson Gautam, Ville Mustonen, Tero Aittokallio
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1008971

Analogous computations in working memory input, output and motor gating: Electrophysiological and computational modeling evidence
Cited by: 17
Author(s): Rachel Rac-Lubashevsky, Michael J. Frank
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007250

The role of actin protrusion dynamics in cell migration through a degradable viscoelastic extracellular matrix: Insights from a computational model
Cited by: 82
Author(s): Tommy Heck, Diego A. Vargas, Bart Smeets, Herman Ramón, Paul Van Liedekerke, Hans Van Oosterwyck
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pcbi.1008373

Timescales of motor memory formation in dual-adaptation
Cited by: 15
Author(s): Marion Forano, David W. Franklin
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1008015

Interactions between calmodulin and neurogranin govern the dynamics of CaMKII as a leaky integrator
Cited by: 15
Author(s): Mariam Ordyan, Tom Bartol, Mary B Kennedy, Padmini Rangamani, Terrence J. Sejnowski
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1007692

Learning to represent signals spike by spike
Cited by: 31
Author(s): Wieland Brendel, Ralph Bourdoukan, Pietro Vertechi, Christian K. Machens, Sophie Denève
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008636

A numerical framework for mechano-regulated tendon healing—Simulation of early regeneration of the Achilles tendon
Cited by: 6
Author(s): Thomas Notermans, Petri Tanska, Rami K. Korhonen, Hanifeh Khayyeri, Hanna Isaksson
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1009013

Histone tails cooperate to control the breathing of genomic nucleosomes
Cited by: 17
Author(s): Jan Huertas, Hans R. Schöler, Vlad Cojocaru
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007888

Taste of time: A porous-medium model for human tongue surface with implications for early taste perception
Cited by: 4
Author(s): Zhenxing Wu, Kai Zhao
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008233

Forecasting influenza in Europe using a metapopulation model incorporating cross-border commuting and air travel
Cited by: 11
Author(s): Sarah Krämer, Sen Pei, Jeffrey Shaman
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1008349

PyHIST: A Histological Image Segmentation Tool
Cited by: 21
Author(s): Manuel Muñoz-Aguirre, Vasilis F. Ntasis, Santiago Rojas, Roderic Guigó
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1008650

Evolution to alternative levels of stable diversity leaves areas of niche space unexplored
Cited by: 6
Author(s): Ilan N. Rubin, Iaroslav Ispolatov, Michael Doebeli
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008443

Practical fluorescence reconstruction microscopy for large samples and low-magnification imaging
Cited by: 12
Author(s): Julienne LaChance, Daniel Cohen
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1007592

The origin of biological homochirality along with the origin of life
Cited by: 32
Author(s): Yong Chen, Wentao Ma
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pcbi.1009098

Projecting contact matrices in 177 geographical regions: An update and comparison with empirical data for the COVID-19 era
Cited by: 90
Author(s): Kiesha Prem, Kevin van Zandvoort, Petra Klepac, Rosalind M Eggo, Nicholas Davies, Alex R. Cook, Mark Jit
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008523

Mistakes can stabilise the dynamics of rock-paper-scissors games
Cited by: 3
Author(s): Maria Kleshnina, Sabrina Streipert, Jerzy A. Filar, Krishnendu Chatterjee
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1009069

PHENSIM: Phenotype Simulator
Cited by: 7
Author(s): Salvatore Alaimo, Rosaria Valentina Rapicavoli, Gioacchino P. Marceca, Alessandro La Ferlita, Oksana B. Serebrennikova, Philip N. Tsichlis, Bud Mishra, Alfredo Pulvirenti, Alfredo Ferro
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007867

Balance between asymmetry and abundance in multi-domain DNA-binding proteins may regulate the kinetics of their binding to DNA
Cited by: 5
Author(s): Arumay Pal, Yaakov Levy
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008713

Protective impacts of household-based tuberculosis contact tracing are robust across endemic incidence levels and community contact patterns
Cited by: 4
Author(s): Joshua Havumaki, Ted Cohen, Chengwei Zhai, Joel C. Miller, Seth D. Guikema, Marisa C. Eisenberg, Jon Zelner
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1009357

Multiscale model of defective interfering particle replication for influenza A virus infection in animal cell culture
Cited by: 5
Author(s): Daniel Rüdiger, Lars Pelz, Marc D. Hein, Sascha Young Kupke, Udo Reichl
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1007860

The Affective Ising Model: A computational account of human affect dynamics
Cited by: 10
Author(s): Tim Loossens, Merijn Mestdagh, Egon Dejonckheere, Peter Kuppens, Francis Tuerlinckx, Stijn Verdonck
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008954

Deep template-based protein structure prediction
Cited by: 16
Author(s): Fandi Wu, Jinbo Xu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008825

A computational study of co-inhibitory immune complex assembly at the interface between T cells and antigen presenting cells
Cited by: 2
Author(s): Zhaoqian Su, Kalyani Dhusia, Yinghao Wu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007998

Mechanobiological model for simulation of injured cartilage degradation via pro-inflammatory cytokines and mechanical stimulus
Cited by: 19
Author(s): Atte Eskelinen, Petri Tanska, Cristina Florea, Gustavo A. Orozco, Petro Julkunen, Alan J. Grodzinsky, Rami K. Korhonen
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1007730

Intuitive physical reasoning about objects’ masses transfers to a visuomotor decision task consistent with Newtonian physics
Cited by: 3
Author(s): Nils Neupärtl, Fabian Tatai, Constantin A. Rothkopf
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1007414

Stochastic optimal open-loop control as a theory of force and impedance planning via muscle co-contraction
Cited by: 18
Author(s): Bastien Berret, Frédéric Jean
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008861

Hypoxic pulmonary vasoconstriction as a regulator of alveolar-capillary oxygen flux: A computational model of ventilation-perfusion matching
Cited by: 5
Author(s): Andrew D. Marquis, Filip Ježek, David J. Pinsky, Daniel A. Beard
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008639

Adaptive social contact rates induce complex dynamics during epidemics
Cited by: 27
Author(s): Ronan F. Arthur, James Holland Jones, Matthew H. Bonds, Yoav Ram, Marcus W. Feldman
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1007383

Why do G-quadruplexes dimerize through the 5’-ends? Driving forces for G4 DNA dimerization examined in atomic detail
Cited by: 25
Author(s): Mateusz Kogut, Cyprian Kleist, Jacek Czub
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pcbi.1009109

Sperm migration in the genital tract—In silico experiments identify key factors for reproductive success
Cited by: 3
Author(s): Jorin Diemer, Jens Hahn, Björn Goldenbogen, Karin Müller, Edda Klipp
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008502

Real-time structural motif searching in proteins using an inverted index strategy
Cited by: 11
Author(s): Sebastian Bittrich, S.K. Burley, Alexander Rose
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1009286

Modelling conformational state dynamics and its role on infection for SARS-CoV-2 Spike protein variants
Cited by: 70
Author(s): Natália Teruel, Olivier Mailhot, Rafaël Najmanovich
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1009134

Internality and the internalisation of failure: Evidence from a novel task
Cited by: 0
Author(s): Federico Mancinelli, Jonathan P. Roiser, Peter Dayan
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008762

How public reaction to disease information across scales and the impacts of vector control methods influence disease prevalence and control efficacy
Cited by: 1
Author(s): Jing Jiao, G. Suárez, Nina H. Fefferman
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007935

Brain dynamics for confidence-weighted learning
Cited by: 22
Author(s): Florent Meyniel
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1007718

Mechanisms underlying attraction to odors in walking Drosophila
Cited by: 13
Author(s): Liangyu Tao, Siddhi Ozarkar, Vikas Bhandawat
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1007450

Maximizing the reusability of gene expression data by predicting missing metadata
Cited by: 4
Author(s): Pei-Yau Lung, Dongrui Zhong, Xiaodong Pang, Yan Li, Jinfeng Zhang
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1007801

Electrostatic and bending energies predict staggering and splaying in nonmuscle myosin II minifilaments
Cited by: 8
Author(s): Tom L. Kaufmann, Ulrich S. Schwarz
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1009378

Conventional measures of intrinsic excitability are poor estimators of neuronal activity under realistic synaptic inputs
Cited by: 2
Author(s): Adrienn Szabó, Katalin Schlett, Attila Szűcs
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1007917

Compositional Lotka-Volterra describes microbial dynamics in the simplex
Cited by: 41
Author(s): Tyler Joseph, Liat Shenhav, João B. Xavier, Eran Halperin, Itsik Pe’er
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1007525

Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli
Cited by: 33
Author(s): Bin Du, Laurence T. Yang, Colton J. Lloyd, Xin Fang, Jaehyung Kim
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pcbi.1007951

Model-based and phylogenetically adjusted quantification of metabolic interaction between microbial species
Cited by: 5
Author(s): Tony J. Lam, Moses Stamboulian, Wontack Han, Yuzhen Ye
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1008481

Hierarchical motor adaptations negotiate failures during force field learning
Cited by: 4
Author(s): Tsuyoshi Ikegami, Gowrishankar Ganesh, Tricia L. Gibo, Toshinori Yoshioka, Rieko Osu, Mitsuo Kawato
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007708

Mechanistic models of PLC/PKC signaling implicate phosphatidic acid as a key amplifier of chemotactic gradient sensing
Cited by: 4
Author(s): Jamie L. Nosbisch, Anisur Rahman, Krithika Mohan, Timothy C. Elston, James E. Bear, Jason M. Haugh
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008079

ADP is the dominant controller of AMP-activated protein kinase activity dynamics in skeletal muscle during exercise
Cited by: 10
Author(s): Ian F. Coccimiglio, D. Clarke
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1009264

Mitigating COVID-19 outbreaks in workplaces and schools by hybrid telecommuting
Cited by: 9
Author(s): Simon Mauras, Vincent Cohen-Addad, Guillaume Duboc, Max Dupré la Tour, Paolo Frasca, Claire Mathieu, Lulla Opatowski, Laurent Viennot
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1007740

Basal leakage in oscillation: Coupled transcriptional and translational control using feed-forward loops
Cited by: 3
Author(s): Ignasius Joanito, Ching‐Cher Sanders Yan, Jhih‐Wei Chu, Shu-Hsing Wu, Chao‐Ping Hsu
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1008483

Unbiased and efficient log-likelihood estimation with inverse binomial sampling
Cited by: 21
Author(s): Bas van Opheusden, Luigi Acerbi, Wei Ji
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1007842

Critical role of deadenylation in regulating poly(A) rhythms and circadian gene expression
Cited by: 4
Author(s): Xiangyu Yao, Shihoko Kojima, Jing Chen
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1009045

Thalamo-cortical spiking model of incremental learning combining perception, context and NREM-sleep
Cited by: 7
Author(s): Bruno Golosio, Chiara De Luca, Cristiano Capone, Elena Pastorelli, Giovanni Stegel, Gianmarco Tiddia, G. De Bonis, P. Paolucci
Software Mentions: 1
Published: over 5 years ago