Ecosyste.ms: Papers

10.1186/1471-2105-8-462

Dynamic simulation of regulatory networks using SQUAD
Cited by: 137
Author(s): Alessandro Di Cara, Abhishek Garg, Giovanni De Micheli, Ioannis Xenarios, Luis Mendoza
Software Mentions: 4
Published: almost 17 years ago

10.1186/gb-2010-11-4-r41

Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps
Cited by: 274
Author(s): Isheng Jason Tsai, Thomas D. Otto, Matthew Berriman
Software Mentions: 3
Published: over 14 years ago

10.1371/journal.pcbi.1003995

Pyranose Dehydrogenase Ligand Promiscuity: A Generalized Approach to Simulate Monosaccharide Solvation, Binding, and Product Formation
Cited by: 8
Author(s): Michael Graf, Zhihua Lin, Urban Bren, Dietmar Haltrich, W. F. van Gunsteren, Chris Oostenbrink
Software Mentions: 2
Published: almost 10 years ago

10.3390/pharmaceutics12121191

A Physiologically-Based Pharmacokinetic (PBPK) Model Network for the Prediction of CYP1A2 and CYP2C19 Drug–Drug–Gene Interactions with Fluvoxamine, Omeprazole, S-mephenytoin, Moclobemide, Tizanidine, Mexiletine, Ethinylestradiol, and Caffeine
Cited by: 15
Author(s): Tobias Kanacher, Andreas Lindauer, Enrica Mezzalana, Ingrid Michon, Céline Veau, José David Gómez Mantilla, Valerie Nock, Angèle Fleury
Software Mentions: 2
Published: almost 4 years ago

10.1007/s00345-020-03168-1

Robot-assisted simple prostatectomy versus open simple prostatectomy: a single-center comparison
Cited by: 25
Author(s): Robert Dotzauer, Alessandro Torre, Arun Z. Thomas, Maximilian Peter Brandt, Katharina Böhm, René Mager, Hendrik Borgmann, Wolfgang Jäger, M. Kurosch, Thomas Höfner, Christian Ruckes, Axel Haferkamp, Igor Tsaur
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2016.00025

Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs
Cited by: 24
Author(s): Jacob P. Beam, Hans C. Bernstein, Zackary J. Jay, Mark A. Kozubal, Ryan deM. Jennings, Susannah G. Tringe, William P. Inskeep
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pbio.2002617

Developing international open science collaborations: Funder reflections on the Open Science Prize
Cited by: 4
Author(s): Elizabeth Kittrie, Audie A. Atienza, Robert Kiley, David L. Carr, Aki MacFarlane, Vinay Pai, Jennifer Couch, Jared Bajkowski, Joseph F. Bonner, Daniel Mietchen, Philip E. Bourne
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0030196

Validation of a New Method for Testing Provider Clinical Quality in Rural Settings in Low- and Middle-Income Countries: The Observed Simulated Patient
Cited by: 28
Author(s): Tin Aung, Dominic Montagu, Karen Schlein, Thin Myat Khine, Willi McFarland
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0054581

Prevalence, Specificity and Determinants of Lipid-Interacting PDZ Domains from an In-Cell Screen and In Vitro Binding Experiments
Cited by: 22
Author(s): Ylva Ivarsson, Anna Anna Maria Wawrzyniak, Rudra Kashyap, Jolanta Polanowska, S. Betzi, Frédérique Lembo, Elke Vermeiren, Driss Chiheb, Nicolas Lenfant, Xavier Morelli, Jean-Paul Borg, Jérôme Reboul, Pascale Zimmermann
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0101713

Separation of Respiratory Influences from the Tachogram: A Methodological Evaluation
Cited by: 23
Author(s): Devy Widjaja, Alexander Caicedo, Elke Vlemincx, Ilse Van Diest, Sabine Van Huffel
Software Mentions: 1
Published: over 10 years ago

10.1002/jbio.201600304

Fluorescence hyperspectral imaging (fHSI) using a spectrally resolved detector array
Cited by: 29
Author(s): Anna Siri Luthman, Sebastian Dumitru, Isabel Quirós-González, James Joseph, Sarah E. Bohndiek
Software Mentions: 1
Published: over 7 years ago

10.1021/acs.jcim.0c01216

Efficient <i>In Silico</i> Saturation Mutagenesis of a Member of the Caspase Protease Family
Cited by: 5
Author(s): Christoph Öhlknecht, Sonja Katz, Christina Kröß, Bernhard Sprenger, Petra Engele, Rainer Schneider, Chris Oostenbrink
Software Mentions: 1
Published: almost 4 years ago

10.1002/jcc.24488

Free‐energy calculations of residue mutations in a tripeptide using various methods to overcome inefficient sampling
Cited by: 11
Author(s): Michael Graf, Manuela Maurer, Chris Oostenbrink
Software Mentions: 1
Published: about 8 years ago

10.1038/srep11548

Huygens synchronization of two clocks
Cited by: 76
Author(s): Henrique M. Oliveira, L.V. Melo
Software Mentions: 1
Published: over 9 years ago

10.1155/2014/579401

The Application of Similar Image Retrieval in Electronic Commerce
Cited by: 4
Author(s): Yuping Hu, Hua Yin, Dong‐Guk Han, Fei Yu
Software Mentions: 1
Published: almost 11 years ago

10.1007/s00204-020-02922-z

A workflow to build PBTK models for novel species
Cited by: 13
Author(s): Sebastian Schneckener, Thomas G. Preuß, Lars Kuepfer, Johannes Witt
Software Mentions: 1
Published: about 4 years ago

10.1155/2011/658930

Sparse Representation of Deformable 3D Organs with Spherical Harmonics and Structured Dictionary
Cited by: 2
Author(s): Dan Wang, A.H. Tewfik, Yingchun Zhang, Yunhe Shen
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2164-12-S1-S4

Genome-wide functional annotation and structural verification of metabolic ORFeome of Chlamydomonas reinhardtii
Cited by: 18
Author(s): Lila Ghamsari, S. Balaji, Yun Shen, Xinping Yang, Dawit Balcha, Changyu Fan, Tong Hao, Haiyuan Yu, Jason A. Papin, Kourosh Salehi‐Ashtiani
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2164-11-671

A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding
Cited by: 37
Author(s): Nicolas Lenfant, Jolanta Polanowska, Sophie Bamps, Shizue Omi, Jean-Paul Borg, Jérôme Reboul
Software Mentions: 1
Published: almost 14 years ago

10.1155/2013/383646

Family-Specific Degenerate Primer Design: A Tool to Design Consensus Degenerated Oligonucleotides
Cited by: 30
Author(s): Javier Alonso Iserte, Betina Inés Stephan, Sandra Elizabeth Goñi, Cristina Silvia Borio, Pablo Daniel Ghiringhelli, Mario Enrique Lozano
Software Mentions: 1
Published: over 11 years ago

10.1186/s13100-019-0164-5

Tracing the history of LINE and SINE extinction in sigmodontine rodents
Cited by: 15
Author(s): Lei Yang, LuAnn Scott, Holly A. Wichman
Software Mentions: 1
Published: over 5 years ago

10.3390/pharmaceutics12121200

Physiologically Based Pharmacokinetic Modeling of Metoprolol Enantiomers and α-Hydroxymetoprolol to Describe CYP2D6 Drug-Gene Interactions
Cited by: 12
Author(s): Simeon Rüdesheim, Jan-Georg Wojtyniak, Dominik Selzer, Nina Hanke, Felix Mahfoud, Matthias Schwab, Thorsten Lehr
Software Mentions: 1
Published: almost 4 years ago