Ecosyste.ms: Papers

10.1128/mBio.01105-19

Evolution and Global Transmission of a Multidrug-Resistant, Community-Associated Methicillin-Resistant Staphylococcus aureus Lineage from the Indian Subcontinent
Cited by: 42
Author(s): Eike J. Steinig, Sebastián Duchêne, D. Ashley Robinson, Stefan Monecke, Maho Yokoyama, Maisem Laabei, Peter Slickers, Patiyan Andersson, Deborah A. Williamson, Angela Kearns, Richard V. Goering, Elizabeth Dickson, Ralf Ehricht, Margaret Ip, Matthew V. N. O’Sullivan, Geoffrey W. Coombs, Andreas Petersen, Gráinne I. Brennan, Anna C. Shore, David C. Coleman, Annalisa Pantosti, Hermı́nia de Lencastre, Henrik Westh, Nobumichi Kobayashi, Helen Heffernan, Birgit Strommenger, Franziska Layer, Stefan Weber, Hege Vangstein Aamot, Leila Skakni, Sharon J. Peacock, Derek S. Sarovich, Simon R. Harris, Julian Parkhill, Ruth C. Massey, Matthew T. G. Holden, Stephen D. Bentley, Steven Y. C. Tong
Software Mentions: 10
Published: about 5 years ago

10.1038/s41598-021-85262-x

Evaluation of genetic diversity and management of disease in Border Collie dogs
Cited by: 7
Author(s): Pamela Xing Yi Soh, Wei-Feng Hsu, Mehar S. Khatkar, Peter Williamson
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pone.0048375

NetView: A High-Definition Network-Visualization Approach to Detect Fine-Scale Population Structures from Genome-Wide Patterns of Variation
Cited by: 99
Author(s): Markus Neuditschko, Mehar S. Khatkar, Herman W. Raadsma
Software Mentions: 4
Published: about 12 years ago

10.1186/s12864-020-07084-x

Fine-scale population structure and evidence for local adaptation in Australian giant black tiger shrimp (Penaeus monodon) using SNP analysis
Cited by: 12
Author(s): Nga Thi Thu Vu, Kyall R. Zenger, Jarrod L. Guppy, Melony J. Sellars, Catarina N. S. Silva, Shannon R. Kjeldsen, Dean R. Jerry
Software Mentions: 3
Published: over 4 years ago

10.1186/1471-2164-13-282

NetWalker: a contextual network analysis tool for functional genomics
Cited by: 94
Author(s): Kakajan Komurov, Serkan Dursun, Serkan Erdin, Prahlad T. Ram
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0225847

Runs of Homozygosity and NetView analyses provide new insight into the genome-wide diversity and admixture of three German cattle breeds
Cited by: 17
Author(s): Sowah Addo, Stefanie Klingel, Dirk Hinrichs, Georg Thaller
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0177638

Identification of key contributors in complex population structures
Cited by: 12
Author(s): Markus Neuditschko, Herman W. Raadsma, Mehar S. Khatkar, Elisabeth Jonas, Eike J. Steinig, Christine Flury, Heidi Signer-Hasler, Mirjam Frischknecht, Ruedi von Niederhäusern, Tosso Leeb, Stefan Rieder
Software Mentions: 2
Published: over 7 years ago

10.1186/s12864-018-5044-8

Genome-wide SNP analyses reveal high gene flow and signatures of local adaptation among the scalloped spiny lobster (Panulirus homarus) along the Omani coastline
Cited by: 21
Author(s): Rafaida Dhuhai Gharib Al-Breiki, Shannon R. Kjeldsen, Hasifa Afzal, Manal Saif Al Hinai, Kyall R. Zenger, Dean R. Jerry, Mohammed Al-Abri, Madjid Delghandi
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-019-5564-x

High-resolution population structure and runs of homozygosity reveal the genetic architecture of complex traits in the Lipizzan horse
Cited by: 29
Author(s): Gertrud Grilz-Seger, Thomas Druml, Markus Neuditschko, Max Dobretsberger, Michaela Horná, Gottfried Brem
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12864-016-3410-y

Swept away: ocean currents and seascape features influence genetic structure across the 18,000 Km Indo-Pacific distribution of a marine invertebrate, the black-lip pearl oyster Pinctada margaritifera
Cited by: 46
Author(s): Monal M. Lal, Paul C. Southgate, Dean R. Jerry, Cyprien Bosserelle, Kyall R. Zenger
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0161390

A Parallel Population Genomic and Hydrodynamic Approach to Fishery Management of Highly-Dispersive Marine Invertebrates: The Case of the Fijian Black-Lip Pearl Oyster Pinctada margaritifera
Cited by: 18
Author(s): Monal M. Lal, Paul C. Southgate, Dean R. Jerry, Cyprien Bosserelle, Kyall R. Zenger
Software Mentions: 2
Published: over 8 years ago

10.1111/eva.12918

Fine‐scale barriers to connectivity across a fragmented South‐East Asian landscape in six songbird species
Cited by: 9
Author(s): Emilie Cros, Elize Y. X. Ng, Rachel Rui Ying Oh, Qian Tang, Suzan Benedick, David P. Edwards, Suzanne Tomassi, Martin Irestedt, Per G. P. Ericson, Frank E. Rheindt
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41437-018-0144-4

Genomic comparisons reveal biogeographic and anthropogenic impacts in the koala (Phascolarctos cinereus): a dietary-specialist species distributed across heterogeneous environments
Cited by: 23
Author(s): Shannon R. Kjeldsen, Herman W. Raadsma, Kellie Leigh, Jennifer R. Tobey, David N. Phalen, Andrew K. Krockenberger, William Ellis, Emily Hynes, Damien P. Higgins, Kyall R. Zenger
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0250608

Genetic diversity and the application of runs of homozygosity-based methods for inbreeding estimation in German White-headed Mutton sheep
Cited by: 7
Author(s): Sowah Addo, Stefanie Klingel, Georg Thaller, Dirk Hinrichs
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2018.01453

Global Scale Dissemination of ST93: A Divergent Staphylococcus aureus Epidemic Lineage That Has Recently Emerged From Remote Northern Australia
Cited by: 25
Author(s): Sebastiaan J. van Hal, Eike J. Steinig, Patiyan Andersson, Matthew T. G. Holden, Simon R. Harris, Graeme R. Nimmo, Deborah A. Williamson, Helen Heffernan, Stephen Ritchie, Angela Kearns, Matthew J. Ellington, Elizabeth Dickson, Hermı́nia de Lencastre, Geoffrey W. Coombs, Stephen D. Bentley, Julian Parkhill, Deborah C. Holt, Philip M. Giffard, Steven Y. C. Tong
Software Mentions: 1
Published: over 6 years ago

10.1093/gbe/evz118

Population Genomic Signatures of Genetic Structure and Environmental Selection in the Catadromous Roughskin Sculpin Trachidermus fasciatus
Cited by: 16
Author(s): Yulong Li, Dong‐Xiu Xue, Bai-Dong Zhang, Jinxian Liu
Software Mentions: 1
Published: over 5 years ago

10.1007/s00335-019-09820-5

Genome-wide scans identify known and novel regions associated with prolificacy and reproduction traits in a sub-Saharan African indigenous sheep (Ovis aries)
Cited by: 23
Author(s): Asrat Tera Dolebo, Negar Khayatzadeh, Aberra Melesse, David Wragg, Mourad Rekik, Aynalem Haile, Barbara Rischkowsky, Max F. Rothschild, Joram M. Mwacharo
Software Mentions: 1
Published: about 5 years ago

10.3390/ani10091520

Genetic Variability in Polish Lowland Sheepdogs Assessed by Pedigree and Genomic Data
Cited by: 2
Author(s): Paula Wiebke Michels, O. Distl
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-019-44137-y

Genetic homogenization of indigenous sheep breeds in Northwest Africa
Cited by: 17
Author(s): Ibrahim Belabdi, Abdessamad Ouhrouch, Mohamed Lafri, Semir Bechir Suheil Gaouar, Elena Ciani, Ahmed Redha Benali, Hakim Ould Ouelhadj, Abdelmajid Haddioui, François Pompanon, Véronique Blanquet, Dominique Taurisson-Mouret, Sahraoui Harkat, Johannes A. Lenstra, Badr Benjelloun, Anne Da Silva
Software Mentions: 1
Published: over 5 years ago

10.1111/eva.13118

Ethiopian indigenous goats offer insights into past and recent demographic dynamics and local adaptation in sub‐Saharan African goats
Cited by: 5
Author(s): Getinet Mekuriaw Tarekegn, Negar Khayatzadeh, Bin Liu, Sarah Osama, Aynalem Haile, Barbara Rischkowsky, Wenguang Zhang, Kassahun Tesfaye, Tadelle Dessie, Okeyo Ally Mwai, Appolinaire Djikeng, Joram M. Mwacharo
Software Mentions: 1
Published: over 3 years ago