Projects: pypi: NanoFilt
https://packages.ecosyste.ms/registries/pypi.org/packages/NanoFilt
Filtering and trimming of Oxford Nanopore Sequencing data
34 versions
Latest release: over 4 years ago
368 downloads last month
Enhanced Analysis
Educational Contributors:
[email protected]
Repository Activity:
Repository Owner:
Wouter De Coster (user)
Bioinformatics postdoc using short and long read sequencing at Rademakers Lab and research associate for PromethION analysis Academic
Bioinformatics postdoc using short and long read sequencing at Rademakers Lab and research associate for PromethION analysis Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
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+20
Educational commit emails
1 contributors with educational email addresses -
+20
Academic repository owner
Repository owned by academic institution -
+4
Science terms in README
2 scientific terms found in README -
+6
Academic links
1 academic links found in README
Penalties:
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-10
PyPI ecosystem
General-purpose ecosystem
Very Likely Science (100)
Papers Mentioning NanoFilt 124
10.1128/MRA.00263-21
Complete Genome Sequence of African Swine Fever Virus Isolated from a Domestic Pig in Timor-Leste, 2019Cited by: 6
Author(s): Patrick Mileto, Felisiano da Conceição, Vittoria Stevens, David Cummins, Andrea Certoma, Matthew J. Neave, Joanita Bendita da Costa Jong, David T. Williams
Software Mentions: 1
Published: about 4 years ago
10.1128/MRA.01080-20
Complete Genome Sequences of Four Atrazine-Degrading Bacterial Strains, <i>Pseudomonas</i> sp. Strain ADPe, <i>Arthrobacter</i> sp. Strain TES, <i>Variovorax</i> sp. Strain 38R, and <i>Chelatobacter</i> sp. Strain SR38Cited by: 7
Author(s): Loren Billet, Marion Devers‐Lamrani, Rémy-Félix Serre, Emmanuel Julia, Céline Vandecasteele, Nadine Rouard, Fabrice Martin-Laurent, Aymé Spor
Software Mentions: 1
Published: over 4 years ago
10.1128/MRA.01228-20
Complete Genome Sequence of Citrobacter koseri Strain MPUCK001Cited by: 0
Author(s): Tomotaka Ohkubo, Yasuhiko Matsumoto, Otomi Cho, Yuki Ogasawara, Takashi Sugita
Software Mentions: 1
Published: over 4 years ago
10.1128/MRA.00886-20
Complete Genome Sequence of Ceftriaxone-Resistant Neisseria gonorrhoeae SS3160, Isolated in Tokyo, JapanCited by: 1
Author(s): Hirofumi Miyake, Morika Mitobe, Hiroaki Kubota, Hiroki Takano, Keiko Yokoyama, Kenji Sadamasu
Software Mentions: 1
Published: almost 5 years ago
10.1128/MRA.00156-20
Complete Genome Sequence of Tetracycline-Resistant Serratia liquefaciens S1, Isolated from Mixed Greens, Obtained Using Illumina MiSeq and Oxford Nanopore MinION SequencingCited by: 2
Author(s): M. L. Stein, Erik Brinks, Jana Rathje, Gyu-Sung Cho, Charles M. A. P. Franz
Software Mentions: 1
Published: about 5 years ago
10.1128/MRA.00164-20
Complete Genome Sequence of Temperature-Dependent Pigment-Producing Serratia marcescens ATCC 274Cited by: 4
Author(s): Suzuka Yabe, Jun Fukushima
Software Mentions: 1
Published: over 5 years ago
10.1128/MRA.00268-21
Complete Genome Sequence of Bacillus safensis Strain 3A, a Heavy Metal-Resistant Bacterium Isolated from Contaminated Estuarine Sediment in BrazilCited by: 1
Author(s): Thaiane Defalco, Ana Luisa Soares Vasconcelos, Armando Cavalcante Franco Dias, Leticia Barrientos, Ângelo F. Bernardino, Fernando Dini Andreote, Kattia Núñez-Montero
Software Mentions: 1
Published: over 4 years ago
10.1128/MRA.00083-19
Complete Genome Sequence of Brevundimonas diminuta ATCC(B) 19146Cited by: 0
Author(s): Qian Liang, Wenbin Yu, Yue Shi, Hong Li, Xu Fang, Huan Chen
Software Mentions: 1
Published: over 6 years ago
10.1128/MRA.00848-18
Genome Sequencing of Sub-Arctic Mesomycetozoean Sphaeroforma sirkka Strain B5, Performed with the Oxford Nanopore minION and Illumina HiSeq SystemsCited by: 6
Author(s): Anne-Lise Ducluzeau, John R. Tyson, R. Eric Collins, Terrance P. Snutch, Brandon T. Hassett
Software Mentions: 1
Published: almost 7 years ago
10.1128/MRA.01188-20
Complete Genome Sequence of the Cesium-Accumulating Bacterium Rhodococcus qingshengii CS98, Isolated from Soil in JapanCited by: 0
Author(s): Katsuya Satoh, Shogo Ozawa, Hidenori Hayashi, Noriko Tomioka, Issay Narumi, Yutaka Oono
Software Mentions: 1
Published: over 4 years ago
10.1128/MRA.00141-20
Complete Genome Sequence of Blautia producta JCM 1471 TCited by: 2
Author(s): Dieter M. Tourlousse, Mitsuo Sakamoto, Takamasa Miura, Koji Narita, Akiko Ohashi, Yuichi Uchino, Atsushi Yamazoe, Keishi Kameyama, Jun Terauchi, Moriya Ohkuma, Hiroko Kawasaki, Yuji Sekiguchi
Software Mentions: 1
Published: over 5 years ago
10.1128/MRA.00700-21
Complete Genome Sequence of Sphingobium xenophagum PH3-15, Isolated from La Roche-Posay Thermal Water SourcesCited by: 2
Author(s): Pascal Hilaire, Sandy Contreras, Hélène Blanquart-Goudezeune, Jonathan Verbeke, Baudoin Delépine, Lucas Marmiesse, Rémi Peyraud, Stanislas Morand
Software Mentions: 1
Published: almost 4 years ago
10.1128/MRA.00148-20
Complete Genome Sequence of Pseudomonas otitidis Strain MrB4, Isolated from Lake Biwa in JapanCited by: 2
Author(s): Kentaro Miyazaki, Erina Hase, Tomomasa Maruya
Software Mentions: 1
Published: over 5 years ago
10.1128/MRA.01477-20
Complete Genome Sequence of Staphylococcus aureus Strain 834, Isolated from a Septic Patient in JapanCited by: 2
Author(s): Hisaya K. Ono, Yasunori Suzuki, Hiroaki Kubota, Kozo Asano, Shinji Takaı̈, Akio Nakane, Dong‐Liang Hu
Software Mentions: 1
Published: over 4 years ago
10.1128/MRA.00272-21
Complete Genome Sequences of Thermus thermophilus Strains HB5002 and HB5008, Isolated from Mine Hot Spring in JapanCited by: 3
Author(s): Kentaro Miyazaki, Toshiyuki Moriya, Natsuko Tokito, Tairo Oshima, Kei Yura, Yoshitaka Bessho
Software Mentions: 1
Published: over 4 years ago
10.1128/MRA.00142-20
Complete Genome Sequence of Megamonas funiformis JCM 14723 TCited by: 1
Author(s): Dieter M. Tourlousse, Mitsuo Sakamoto, Takamasa Miura, Koji Narita, Akiko Ohashi, Yuichi Uchino, Atsushi Yamazoe, Keishi Kameyama, Jun Terauchi, Moriya Ohkuma, Hiroko Kawasaki, Yuji Sekiguchi
Software Mentions: 1
Published: over 5 years ago
10.1128/MRA.01014-20
Complete Genome Sequences of the Escherichia coli Donor Strains ST18 and MFD <i>pir</i>Cited by: 5
Author(s): Simon A. Jackson, Bridget J. Fellows, Peter C. Fineran
Software Mentions: 1
Published: over 4 years ago
10.1128/MRA.01309-19
Complete Genome Sequence of Campylobacter armoricus CA639, Which Carries Two Plasmids, Compiled Using Oxford Nanopore and Illumina Sequencing TechnologiesCited by: 1
Author(s): Amine M. Boukerb, Julien Schaeffer, Joëlle Serghine, Grégory Carrier, Françoise S. Le Guyader, Michèle Gourmelon
Software Mentions: 1
Published: over 5 years ago
10.3390/microorganisms9081766
The Ever-Expanding Pseudomonas Genus: Description of 43 New Species and Partition of the Pseudomonas putida GroupCited by: 197
Author(s): Léa Girard, Cédric Lood, Monica Höfte, Peter Vandamme, Hassan Rokni‐Zadeh, Vera van Noort, Rob Lavigne, René De Mot
Software Mentions: 1
Published: almost 4 years ago
10.7717/peerj.11088
VirION2: a short- and long-read sequencing and informatics workflow to study the genomic diversity of viruses in natureCited by: 20
Author(s): Olivier Zablocki, Michelle L. Michelsen, Marie Burris, Natalie Solonenko, Joanna Warwick-Dugdale, Romik Ghosh, Jennifer Pett‐Ridge, Matthew B. Sullivan, Ben Temperton
Software Mentions: 1
Published: over 4 years ago
10.1002/ece3.6680
Genome structure and content of the rice root‐knot nematode (<i>Meloidogyne graminicola</i>)Cited by: 22
Author(s): Ngan Thi Phan, Julie Orjuela, Etienne G. J. Danchin, Christophe Klopp, Laetitia Perfus‐Barbeoch, Djampa Kozlowski, Georgios Koutsovoulos, Céline Roques, Olivier Bouchez, Margot Zahm, Guillaume Besnard, Stéphane Bellafiore
Software Mentions: 1
Published: almost 5 years ago
10.3389/fmicb.2021.660094
OXA-484, an OXA-48-Type Carbapenem-Hydrolyzing Class D β-Lactamase From Escherichia coliCited by: 9
Author(s): Julian Sommer, Kristina M. Gerbracht, Felix F. Krause, Florian Wild, Manuela Tietgen, Sara Riedel-Christ, Janko Sattler, Axel Hamprecht, Volkhard A. J. Kempf, Stephan Göttig
Software Mentions: 1
Published: about 4 years ago
10.3390/ijms22115513
High-Throughput Sequencing of Phage Display Libraries Reveals Parasitic Enrichment of Indel Mutants Caused by Amplification BiasCited by: 3
Author(s): Sander Plessers, Vincent Van Deuren, Rob Lavigne, Johan Robben
Software Mentions: 1
Published: about 4 years ago
10.21307/jofnem-2021-065
Genome sequence of the coffee root-knot nematode <i>Meloidogyne exigua</i>Cited by: 3
Author(s): Ngan Thi Phan, Guillaume Besnard, Rania Ouazahrou, William Solano Sánchez, Lisa Gil, Sophie Manzi, Stéphane Bellafiore
Software Mentions: 1
Published: over 4 years ago