Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: NEURON

https://packages.ecosyste.ms/registries/pypi.org/packages/NEURON

Empirically-based simulator for modeling neurons and networks of neurons
17 versions
Latest release: about 1 year ago
8 dependent packages
11,286 downloads last month

Papers Mentioning NEURON 766

10.1371/journal.pone.0040726
Morphological Alterations in Newly Born Dentate Gyrus Granule Cells That Emerge after Status Epilepticus Contribute to Make Them Less Excitable
Cited by: 13
Author(s): Julián Tejada, Gabriel Maisonnave Arisi, Norberto Garcia‐Cairasco, Antônio C. Roque
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0036007
Electrical Advantages of Dendritic Spines
Cited by: 65
Author(s): Allan T. Gulledge, Nicholas T. Carnevale, Gregory J Stuart
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0053508
Phenomenological Incorporation of Nonlinear Dendritic Integration Using Integrate-and-Fire Neuronal Frameworks
Cited by: 14
Author(s): Douglas Zhou, Songting Li, Xiao hui Zhang, David Cai
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0041324
Extracellular Neural Microstimulation May Activate Much Larger Regions than Expected by Simulations: A Combined Experimental and Modeling Study
Cited by: 17
Author(s): Sébastien Joucla, Pascal Branchereau, Daniel Cattaert, Blaise Yvert
Software Mentions: 1
Published: over 12 years ago
10.1016/j.cell.2016.05.019
Near-Perfect Synaptic Integration by Na v 1.7 in Hypothalamic Neurons Regulates Body Weight
Cited by: 75
Author(s): Tiago Branco, Adam Tozer, Christopher Magnus, Ken Sugino, Shinsuke Tanaka, Albert K. Lee, John N. Wood, Scott M. Sternson
Software Mentions: 1
Published: over 8 years ago
10.1016/j.celrep.2018.05.035
CPT1a-Dependent Long-Chain Fatty Acid Oxidation Contributes to Maintaining Glucagon Secretion from Pancreatic Islets
Cited by: 69
Author(s): Linford J.B. Briant, Michael S. Dodd, Margarita V. Chibalina, Nils J.G. Rorsman, Paul Johnson, Peter Carmeliet, Patrik Rorsman, Janne Lehmann Knudsen
Software Mentions: 1
Published: over 6 years ago
10.1016/j.celrep.2019.11.068
Unifying Long-Term Plasticity Rules for Excitatory Synapses by Modeling Dendrites of Cortical Pyramidal Neurons
Cited by: 36
Author(s): Christian Ebner, Claudia Clopath, Paul Jedlicka, Hermann Cuntz
Software Mentions: 1
Published: almost 5 years ago
10.1093/cercor/bhaa261
Modeling Reveals Human–Rodent Differences in H-Current Kinetics Influencing Resonance in Cortical Layer 5 Neurons
Cited by: 17
Author(s): Scott Rich, Homeira Moradi Chameh, Vladislav Sekulić, Taufik A. Valiante, Frances K. Skinner
Software Mentions: 1
Published: about 4 years ago
10.1038/s42003-019-0408-4
The subthreshold-active KV7 current regulates neurotransmission by limiting spike-induced Ca2+ influx in hippocampal mossy fiber synaptic terminals
Cited by: 16
Author(s): Katiuscia Martinello, E. Giacalone, Michele Migliore, David A. Brown, Maulik Shah
Software Mentions: 1
Published: over 5 years ago
10.1038/s42003-020-01299-0
Quantification of clinically applicable stimulation parameters for precision near-organ neuromodulation of human splenic nerves
Cited by: 11
Author(s): Isha Gupta, Antonino M. Cassarà, Ilya Tarotin, Matteo Donegà, Jason A. Miranda, David M. Sokal, Sebastien Ouchouche, Wesley Dopson, P Matteucci, Esra Neufeld, Matthew A. Schiefer, Alison Rowles, Paul McGill, Justin Perkins, Nikola Doležalová, Kourosh Saeb‐Parsy, Niels Kuster, Refet Fırat Yazıcıoğlu, Jason Witherington, Daniel Chew
Software Mentions: 1
Published: about 4 years ago
10.1038/s42003-020-0953-x
Parameter tuning differentiates granule cell subtypes enriching transmission properties at the cerebellum input stage
Cited by: 41
Author(s): Stefano Masoli, Marialuisa Tognolina, Umberto Laforenza, Francesco Moccia, Egidio D’Angelo
Software Mentions: 1
Published: over 4 years ago
10.1038/s42003-020-01360-y
Cellular-resolution mapping uncovers spatial adaptive filtering at the rat cerebellum input stage
Cited by: 22
Author(s): Stefano Casali, Marialuisa Tognolina, Daniela Gandolfi, Jonathan Mapelli, Egidio D’Angelo
Software Mentions: 1
Published: about 4 years ago
10.1038/s42005-020-00439-6
Axon hillock currents enable single-neuron-resolved 3D reconstruction using diamond nitrogen-vacancy magnetometry
Cited by: 3
Author(s): Madhur Parashar, Kasturi Saha, Sambaran Bandyopadhyay
Software Mentions: 1
Published: about 4 years ago
10.1155/2012/359529
Modeling Spike-Train Processing in the Cerebellum Granular Layer and Changes in Plasticity Reveal Single Neuron Effects in Neural Ensembles
Cited by: 20
Author(s): Chaitanya Medini, Bipin Nair, Egidio D’Angelo, Giovanni Naldi, Shyam Diwakar
Software Mentions: 1
Published: almost 13 years ago
10.1155/2020/8834651
Simulations of Myenteric Neuron Dynamics in Response to Mechanical Stretch
Cited by: 0
Author(s): Donghua Liao, Jingbo Zhao, Hans Gregersen
Software Mentions: 1
Published: about 4 years ago
10.1155/2019/4862157
Control of a Humanoid NAO Robot by an Adaptive Bioinspired Cerebellar Module in 3D Motion Tasks
Cited by: 28
Author(s): Alberto Antonietti, Dario Martina, Claudia Casellato, Egidio D’Angelo, Alessandra Pedrocchi
Software Mentions: 1
Published: almost 6 years ago
10.1155/2016/3676582
Optimizing NEURON Simulation Environment Using Remote Memory Access with Recursive Doubling on Distributed Memory Systems
Cited by: 0
Author(s): Danish Shehzad, Zeki Bozkuź
Software Mentions: 1
Published: almost 9 years ago
10.1155/2012/795291
Development of a Scheme and Tools to Construct a Standard Moth Brain for Neural Network Simulations
Cited by: 10
Author(s): Hidetoshi Ikeno, Tomoki Kazawa, Shigehiro Namiki, Daisuke Miyamoto, Yoshihito Sato, Stephan Shuichi Haupt, Ikuko Nishikawa, Ryohei Kanzaki
Software Mentions: 1
Published: almost 13 years ago
10.1155/2020/5436807
A Lead Field Two-Domain Model for Longitudinal Neural Tracts—Analytical Framework and Implications for Signal Bandwidth
Cited by: 2
Author(s): G. Fischer, Markus Kofler, Michael Handler, Daniel Baumgarten
Software Mentions: 1
Published: over 4 years ago
10.1016/j.csbj.2016.09.002
The promises of quantitative systems pharmacology modelling for drug development
Cited by: 76
Author(s): Vincent Knight-Schrijver, Vijayalakshmi Chelliah, Lourdes Cucurull‐Sanchez, Nicolas Le Novère
Software Mentions: 1
Published: almost 9 years ago
10.1016/j.crneur.2021.100007
Ion-channel regulation of response decorrelation in a heterogeneous multi-scale model of the dentate gyrus
Cited by: 15
Author(s): Poonam Mishra, Rishikesh Narayanan
Software Mentions: 1
Published: almost 4 years ago
10.1016/j.dib.2015.12.018
Data for spatial characterization of AC signal propagation over primary neuron dendrites
Cited by: 0
Author(s): Hojeong Kim, C. J. Heckman
Software Mentions: 1
Published: over 8 years ago
10.1111/j.1460-9568.2010.07146.x
Intrinsic subthreshold oscillations extend the influence of inhibitory synaptic inputs on cortical pyramidal neurons
Cited by: 19
Author(s): Klaus M. Stiefel, Jean-Marc Fellous, Peter J. Thomas, Terrence J. Sejnowski
Software Mentions: 1
Published: over 14 years ago
10.12688/f1000research.22584.2
Computationally going where experiments cannot: a dynamical assessment of dendritic ion channel currents during in vivo-like states
Cited by: 6
Author(s): Alexandre Guet-McCreight, Frances K. Skinner
Software Mentions: 1
Published: over 4 years ago
10.12688/f1000research.11808.2
Proteolytic processing of the L-type Ca2+ channel alpha11.2 subunit in neurons
Cited by: 3
Author(s): Olivia R. Buonarati, Peter B. Henderson, Geoffrey G. Murphy, Mary C. Horne, Johannes Hell
Software Mentions: 1
Published: over 6 years ago
10.12688/f1000research.9277.3
A multi-scale computational model of the effects of TMS on motor cortex
Cited by: 12
Author(s): Hyeon Seo, Natalie Schaworonkow, Sung Chan Jun, Jochen Triesch
Software Mentions: 1
Published: over 7 years ago
10.3389/fnagi.2021.668948
Analysis of Age-Dependent Alterations in Excitability Properties of CA1 Pyramidal Neurons in an APPPS1 Model of Alzheimer’s Disease
Cited by: 8
Author(s): Paola Vitale, Ana Rita Salgueiro-Pereira, Carmen Alina Lupaşcu, Michael Willem, Rosanna Migliore, Michele Migliore, Hélène Marie
Software Mentions: 1
Published: over 3 years ago
10.3389/fbioe.2017.00064
A Method for the Analysis of AP Foot Convexity: Insights into Smooth Muscle Biophysics
Cited by: 1
Author(s): Shailesh Appukuttan, Mithun Padmakumar, Keith L. Brain, Rohit Manchanda
Software Mentions: 1
Published: about 7 years ago
10.3389/fncel.2020.00135
Modeling a Nociceptive Neuro-Immune Synapse Activated by ATP and 5-HT in Meninges: Novel Clues on Transduction of Chemical Signals Into Persistent or Rhythmic Neuronal Firing
Cited by: 18
Author(s): Alina Suleimanova, Max Talanov, Oleg Gafurov, Fail Gafarov, Kseniia Koroleva, Anaïs Virenque, Francesco M. Noé, Nikita Mikhailov, Andrea Nistri, Rashid Giniatullin
Software Mentions: 1
Published: over 4 years ago
10.3389/fncel.2015.00093
Dendritic patch-clamp recordings from cerebellar granule cells demonstrate electrotonic compactness
Cited by: 13
Author(s): Igor Delvendahl, Isabelle Straub, Stefan Hallermann
Software Mentions: 1
Published: over 9 years ago
10.3389/fncel.2020.554405
Alterations in Intrinsic and Synaptic Properties of Hippocampal CA1 VIP Interneurons During Aging
Cited by: 8
Author(s): Ruggiero Francavilla, Alexandre Guet-McCreight, Sona Amalyan, Chin Wai Hui, Dimitry Topolnik, François Michaud, Beatrice Marino, Marie‐Ève Tremblay, Frances K. Skinner, Lisa Topolnik
Software Mentions: 1
Published: about 4 years ago
10.3389/fncel.2013.00255
Synaptic integration by NG2 cells
Cited by: 16
Author(s): Wenjing Sun, Dirk Dietrich
Software Mentions: 1
Published: almost 12 years ago
10.3389/fncel.2015.00338
Hair cell-type dependent expression of basolateral ion channels shapes response dynamics in the frog utricle
Cited by: 4
Author(s): Alessandro Venturino, Adriano Oda, Paola Perin
Software Mentions: 1
Published: about 9 years ago
10.3389/fncel.2019.00210
Modeling Analysis of Axonal After Potential at Hippocampal Mossy Fibers
Cited by: 3
Author(s): Haruyuki Kamiya
Software Mentions: 1
Published: over 5 years ago
10.3389/fncel.2014.00145
Patch-clamp recordings of rat neurons from acute brain slices of the somatosensory cortex during magnetic stimulation
Cited by: 49
Author(s): Tamar Pashut, Dafna Magidov, Hana Ben-Porat, Shuki Wolfus, A. Friedman, Eli Perel, Michal Lavidor, Izhar Bar‐Gad, Y. Yeshurun, Alon Korngreen
Software Mentions: 1
Published: over 10 years ago
10.3389/fncel.2016.00209
Computer Simulations Support a Morphological Contribution to BDNF Enhancement of Action Potential Generation
Cited by: 3
Author(s): Domenico F. Galati, Brian G. Hiester, Kevin R. Jones
Software Mentions: 1
Published: about 8 years ago
10.3389/fncel.2014.00237
Computational modeling predicts the ionic mechanism of late-onset responses in unipolar brush cells
Cited by: 12
Author(s): Sathyaa Subramaniyam, Sergio Solinas, Paola Perin, Francesca Locatelli, Sergio Masetto, Egidio D’Angelo
Software Mentions: 1
Published: over 10 years ago
10.3389/fncel.2020.00118
Homogeneous and Narrow Bandwidth of Spike Initiation in Rat L1 Cortical Interneurons
Cited by: 3
Author(s): Stefano Borda Bossana, Christophe Verbist, Michèle Giugliano
Software Mentions: 1
Published: over 4 years ago
10.3389/fncel.2013.00263
Frequency dependence of CA3 spike phase response arising from h-current properties
Cited by: 11
Author(s): Mélodie Borel, Simone Guadagna, Hyun Jae Jang, Jeehyun Kwag, Ole Paulsen
Software Mentions: 1
Published: almost 12 years ago
10.3389/fncel.2016.00069
Editorial: Determinants of Synaptic Information Transfer: From Ca2+ Binding Proteins to Ca2+ Signaling Domains
Cited by: 1
Author(s): Philippe Isope, Christian Wilms, Hartmut Schmidt
Software Mentions: 1
Published: over 8 years ago
10.3389/fncel.2015.00047
Action potential processing in a detailed Purkinje cell model reveals a critical role for axonal compartmentalization
Cited by: 53
Author(s): Stefano Masoli, Sergio Solinas, Egidio D’Angelo
Software Mentions: 1
Published: over 9 years ago
10.3389/fncel.2018.00420
Giant Depolarizing Potentials Trigger Transient Changes in the Intracellular Cl- Concentration in CA3 Pyramidal Neurons of the Immature Mouse Hippocampus
Cited by: 17
Author(s): Aniello Lombardi, Paul Jedlicka, Heiko J. Luhmann, Werner Kilb
Software Mentions: 1
Published: about 6 years ago
10.3389/fncel.2017.00050
Two-Photon Na+ Imaging Reports Somatically Evoked Action Potentials in Rat Olfactory Bulb Mitral and Granule Cell Neurites
Cited by: 12
Author(s): Tiffany Ona-Jodar, Niklas J. Gerkau, S. Sara Aghvami, Christine R. Rose, Veronica Egger
Software Mentions: 1
Published: over 7 years ago
10.3389/fncel.2015.00439
Distinct and synergistic feedforward inhibition of pyramidal cells by basket and bistratified interneurons
Cited by: 9
Author(s): Mauro Ferrante, Giorgio A. Ascoli
Software Mentions: 1
Published: about 9 years ago
10.3389/fncel.2014.00287
A simulation study on the effects of dendritic morphology on layer V prefrontal pyramidal cell firing behavior
Cited by: 13
Author(s): Maria Psarrou, Stefanos S. Stefanou, Athanasia Papoutsi, Alexandra Tzilivaki, Vassilis Cutsuridis, Panayiota Poirazi
Software Mentions: 1
Published: about 10 years ago
10.3389/fncel.2014.00310
Effects of low frequency electric fields on synaptic integration in hippocampal CA1 pyramidal neurons: implications for power line emissions
Cited by: 21
Author(s): Francesco Cavarretta, Nicholas T. Carnevale, Domenico Tegolo, Michele Migliore
Software Mentions: 1
Published: about 10 years ago
10.3389/fncel.2014.00456
Dendritic atrophy constricts functional maps in resonance and impedance properties of hippocampal model neurons
Cited by: 20
Author(s): Neha Dhupia, Rahul Kumar Rathour, Rishikesh Narayanan
Software Mentions: 1
Published: almost 10 years ago
10.3389/fncel.2019.00359
The Mechanistic Basis for Successful Spinal Cord Stimulation to Generate Steady Motor Outputs
Cited by: 2
Author(s): Amr A. Mahrous, Mohamed H. Mousa, Sherif M. Elbasiouny
Software Mentions: 1
Published: over 5 years ago
10.3389/fncel.2018.00369
Modulation of Hyperpolarization-Activated Inward Current and Thalamic Activity Modes by Different Cyclic Nucleotides
Cited by: 19
Author(s): Maia Datunashvili, Rahul Chaudhary, Mehrnoush Zobeiri, Annika Lüttjohann, Evanthia Mergia, Arnd Baumann, Sabine Balfanz, Björn Budde, Gilles van Luijtelaar, Hans‐Christian Pape, Doris Koesling, Thomas Budde
Software Mentions: 1
Published: about 6 years ago
10.3389/fncel.2018.00175
Diverse Intrinsic Properties Shape Functional Phenotype of Low-Frequency Neurons in the Auditory Brainstem
Cited by: 10
Author(s): Hui Hong, Xiaoyu Wang, Ting Lu, Diego A. R. Zorio, Yuan Wang, Jason Tait Sanchez
Software Mentions: 1
Published: over 6 years ago
10.3389/fncel.2017.00071
Single Neuron Optimization as a Basis for Accurate Biophysical Modeling: The Case of Cerebellar Granule Cells
Cited by: 24
Author(s): Stefano Masoli, Martina Francesca Rizza, Martina Sgritta, Werner Van Geit, Felix Schürmann, Egidio D’Angelo
Software Mentions: 1
Published: over 7 years ago
10.3389/fncel.2017.00278
Synaptic Activation of a Detailed Purkinje Cell Model Predicts Voltage-Dependent Control of Burst-Pause Responses in Active Dendrites
Cited by: 82
Author(s): Stefano Masoli, Egidio D’Angelo
Software Mentions: 1
Published: about 7 years ago
10.3389/fncel.2021.644047
Deciphering in silico the Role of Mutated NaV1.1 Sodium Channels in Enhancing Trigeminal Nociception in Familial Hemiplegic Migraine Type 3
Cited by: 4
Author(s): Alina Suleimanova, Max Talanov, Arn M. J. M. van den Maagdenberg, Rashid Giniatullin
Software Mentions: 1
Published: over 3 years ago
10.3389/fncel.2015.00239
Calmodulin as a major calcium buffer shaping vesicular release and short-term synaptic plasticity: facilitation through buffer dislocation
Cited by: 19
Author(s): Yulia Timofeeva, Kirill E. Volynski
Software Mentions: 1
Published: over 9 years ago
10.3389/fncel.2020.00040
Myelination Increases the Spatial Extent of Analog-Digital Modulation of Synaptic Transmission: A Modeling Study
Cited by: 6
Author(s): Mickaël Zbili, Dominique Debanne
Software Mentions: 1
Published: over 4 years ago
10.3389/fncel.2021.718413
GABAB Receptor-Mediated Regulation of Dendro-Somatic Synergy in Layer 5 Pyramidal Neurons
Cited by: 5
Author(s): Jan M. Schulz, Jim Kay, Josef Bischofberger, Matthew E. Larkum
Software Mentions: 1
Published: about 3 years ago
10.3389/fncel.2021.645068
Modeling of Astrocyte Networks: Toward Realistic Topology and Dynamics
Cited by: 17
Author(s): Andrey Yu. Verisokin, Darya V. Verveyko, Dmitry E. Postnov, Alexey Brazhe
Software Mentions: 1
Published: over 3 years ago
10.3389/fncel.2020.614377
Cellular and Synaptic Mechanisms That Differentiate Mitral Cells and Superficial Tufted Cells Into Parallel Output Channels in the Olfactory Bulb
Cited by: 6
Author(s): Shelly T Jones, Joel Zylberberg, Nathan E. Schoppa
Software Mentions: 1
Published: almost 4 years ago
10.3389/fncel.2016.00249
Ih Equalizes Membrane Input Resistance in a Heterogeneous Population of Fusiform Neurons in the Dorsal Cochlear Nucleus
Cited by: 12
Author(s): Cesar C. Ceballos, Shuang Li, Antônio C. Roque, Thanos Tzounopoulos, Ricardo M. Leão
Software Mentions: 1
Published: about 8 years ago
10.3389/fncel.2018.00181
Human Cortical Pyramidal Neurons: From Spines to Spikes via Models
Cited by: 91
Author(s): Guy Eyal, Matthijs B. Verhoog, Guilherme Testa-Silva, Yair Deitcher, Ruth Benavides-Piccione, Javier DeFelipe, De Kock, Huibert D. Mansvelder, Idan Segev
Software Mentions: 1
Published: over 6 years ago
10.3389/fncel.2018.00187
Voltage-Gated Sodium Channels in Neocortical Pyramidal Neurons Display Cole-Moore Activation Kinetics
Cited by: 12
Author(s): Mara Almog, Tal Barkai, Angelika Lampert, Alon Korngreen
Software Mentions: 1
Published: over 6 years ago
10.3389/fncel.2014.00424
The heterogeneity in GABAA receptor-mediated IPSC kinetics reflects heterogeneity of subunit composition among inhibitory and excitatory interneurons in spinal lamina II
Cited by: 25
Author(s): Charalampos Labrakakis, Uwe Rudolph, Yves De Koninck
Software Mentions: 1
Published: almost 10 years ago
10.3389/fncom.2014.00105
Systematic analysis of the contributions of stochastic voltage gated channels to neuronal noise
Cited by: 27
Author(s): Cian O’Donnell, Mark C. W. van Rossum
Software Mentions: 1
Published: about 10 years ago
10.3389/fncom.2017.00085
The Slow Dynamics of Intracellular Sodium Concentration Increase the Time Window of Neuronal Integration: A Simulation Study
Cited by: 16
Author(s): Asaph Zylbertal, Yosef Yarom, Shlomo Wagner
Software Mentions: 1
Published: about 7 years ago
10.3389/fncom.2013.00001
Computational modeling of the effects of amyloid-beta on release probability at hippocampal synapses
Cited by: 26
Author(s): Armando Romani, Cristina Marchetti, Daniela Bianchi, Xavier Leinekugel, Panayiota Poirazi, Michele Migliore, Hélène Marie
Software Mentions: 1
Published: almost 12 years ago