Ecosyste.ms: Papers

10.1523/ENEURO.0024-21.2021

Loss of KCNQ2 or KCNQ3 Leads to Multifocal Time-Varying Activity in the Neonatal Forebrain<i>Ex Vivo</i>
Cited by: 5
Author(s): Bowen Hou, Nissi Varghese, Heun Soh, Sabato Santaniello, Anastasios V. Tzingounis
Software Mentions: 1
Published: over 3 years ago

10.1523/ENEURO.0113-21.2021

Hyperexcitability and Loss of Feedforward Inhibition Contribute to Aberrant Plasticity in the<i>Fmr1</i>KO Amygdala
Cited by: 5
Author(s): Matthew N. Svalina, Eartha Mae Guthman, Christian A. Cea-Del Rio, J. Keenan Kushner, Serapio M. Baca, Diego Restrepo, Molly M. Huntsman
Software Mentions: 1
Published: over 3 years ago

10.1021/acsnano.0c10377

Real-Time Multiscale Monitoring and Tailoring of Graphene Growth on Liquid Copper
Cited by: 21
Author(s): Maciej Jankowski, Mehdi Saedi, Francesco La Porta, Anastasios C. Manikas, Christos Tsakonas, Juan Santiago Cingolani, Mie Andersen, Marc de Voogd, G. J. C. van Baarle, Karsten Reuter, Costas Galiotis, Gilles Renaud, Oleg Konovalov, Irene M. N. Groot
Software Mentions: 1
Published: over 3 years ago

10.3390/nu9040368

Targeting Colorectal Cancer Proliferation, Stemness and Metastatic Potential Using Brassicaceae Extracts Enriched in Isothiocyanates: A 3D Cell Model-Based Study
Cited by: 49
Author(s): Lucília Pereira, Patrícia Silva, Marlene Duarte, Liliana Rodrigues, Isabel Catarina Duarte, Cristina Albuquerque, Ana Teresa Serra
Software Mentions: 1
Published: over 7 years ago

10.1063/1.5067301

Matrix crosslinking enhances macrophage adhesion, migration, and inflammatory activation
Cited by: 52
Author(s): Jessica Hsieh, Mark T. Keating, Tim Smith, Vijaykumar S. Meli, Elliot L. Botvinick, Wendy F. Liu
Software Mentions: 1
Published: over 5 years ago

10.1063/1.5113719

Automated sensing and splitting of stem cell colonies on microraft arrays
Cited by: 9
Author(s): Matthew DiSalvo, Nicole M. Smiddy, Nancy L. Allbritton
Software Mentions: 1
Published: about 5 years ago

10.1186/s40478-019-0777-4

Soluble aggregates present in cerebrospinal fluid change in size and mechanism of toxicity during Alzheimer’s disease progression
Cited by: 54
Author(s): Suman De, Daniel R. Whiten, Francesco Simone Ruggeri, Craig D. Hughes, Margarida Rodrigues, Dimitrios I Sideris, Christopher G. Taylor, Francesco A. Aprile, Serge Muyldermans, Tuomas P. J. Knowles, Michele Vendruscolo, Clare E. Bryant, Kaj Blennow, Ingmar Skoog, Silke Kern, Henrik Zetterberg, David Klenerman
Software Mentions: 1
Published: over 5 years ago

10.1186/s12859-020-03727-8

EMU: reconfigurable graphical user interfaces for Micro-Manager
Cited by: 15
Author(s): Joran Deschamps, Jonas Ries
Software Mentions: 1
Published: about 4 years ago

10.1186/s12915-016-0232-y

Serotonin promotes exploitation in complex environments by accelerating decision-making
Cited by: 40
Author(s): Shachar Iwanir, Adam S. Brown, Stanislav Nagy, Dana Najjar, Alexander Kazakov, Kyung Suk Lee, Alon Zaslaver, Erel Levine, David Biron
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12915-021-01048-7

Membrane recruitment of Atg8 by Hfl1 facilitates turnover of vacuolar membrane proteins in yeast cells approaching stationary phase
Cited by: 10
Author(s): Chengwen He, Xuefei Cui, Shaojie Ma, Qin Xu, Yan-Peng Ran, Weizhi Chen, Junxi Mu, Hui Li, Jing Zhu, Qingqiu Gong, Zhiping Xie
Software Mentions: 1
Published: over 3 years ago

10.1186/s12896-019-0545-3

Crosslinked flagella as a stabilized vaccine adjuvant scaffold
Cited by: 5
Author(s): Casey M. Gries, Rohith R. Mohan, Dimitrios Morikis, David Lo
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2121-15-35

High resolution surface plasmon resonance imaging for single cells
Cited by: 72
Author(s): Alexander W. Peterson, Michael Halter, Alessandro Tona, Anne L. Plant
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13104-021-05730-5

CPB-3 and CGH-1 localize to motile particles within dendrites in C. elegans PVD sensory neurons
Cited by: 1
Author(s): Kathrin Spendier, Eugenia C. Olesnicky, Daniel Forand, Margaret Wolf, Darrell J. Killian
Software Mentions: 1
Published: about 3 years ago

10.3762/bjnano.8.125

Evaluation of quantum dot conjugated antibodies for immunofluorescent labelling of cellular targets
Cited by: 24
Author(s): Jennifer E. Francis, David Mason, Raphaël Lévy
Software Mentions: 1
Published: over 7 years ago

10.1016/j.bbrc.2020.06.118

Probing the unfolded protein response in long-lived naked mole-rats
Cited by: 3
Author(s): Zhen Du, Sampurna Chakrabarti, Yavuz Kulaberoglu, Ewan St. John Smith, Christopher M. Dobson, Laura S. Itzhaki, Janet R. Kumita
Software Mentions: 1
Published: about 4 years ago

10.1242/bio.038307

Human asparagine synthetase associates with the mitotic spindle
Cited by: 5
Author(s): Chalongrat Noree, Elena Monfort, Vorasuk Shotelersuk
Software Mentions: 1
Published: almost 7 years ago

10.1242/bio.018937

An antibody toolkit for the study of membrane traffic in<i>Drosophila melanogaster</i>
Cited by: 75
Author(s): Falko Riedel, Alison K. Gillingham, Cláudia Rosa-Ferreira, Antonio Galindo, Sean Munro
Software Mentions: 1
Published: over 8 years ago

10.3390/biology10070571

Construction of a Three-Color Prism-Based TIRF Microscope to Study the Interactions and Dynamics of Macromolecules
Cited by: 5
Author(s): Max S. Fairlamb, A.M. Whitaker, Fletcher E Bain, Maria Spies, Bret Freudenthal
Software Mentions: 1
Published: over 3 years ago

10.1364/BOE.399404

Combining sample expansion and light sheet microscopy for the volumetric imaging of virus-infected cells with super-resolution
Cited by: 9
Author(s): Luca Mascheroni, Katharina M. Scherer, James D. Manton, Edward Ward, Oliver Dibben, Clemens F. Kaminski
Software Mentions: 1
Published: about 4 years ago

10.1155/2018/9046891

Different Membrane Pathways Mediate Ca²⁺Influx in Adrenal Chromaffin Cells Exposed to 150–400 ns Electric Pulses
Cited by: 13
Author(s): Tarique Rajasaheb Bagalkot, Robert C. Terhune, Normand Leblanc, Gale L. Craviso
Software Mentions: 1
Published: almost 7 years ago

10.1063/1.5038965

Serial integration of Dean-structured sample cores with linear inertial focussing for enhanced particle and cell sorting
Cited by: 6
Author(s): Paul M. Holloway, Jonathan Butement, Manjunath Hegde, Jonathan West
Software Mentions: 1
Published: over 6 years ago

10.3390/biomimetics4020033

Cell Culture Platforms with Controllable Stiffness for Chick Embryonic Cardiomyocytes
Cited by: 4
Author(s): María Luisa Durán-Pastén, Daniela Cortés, Alan E. Valencia-Amaya, Santiago King, Gertrudis Hortensia González-Gómez, Mathieu Hautefeuille
Software Mentions: 1
Published: over 5 years ago

10.1186/s13068-017-0874-1

Heterologous co-expression of a yeast diacylglycerol acyltransferase (ScDGA1) and a plant oleosin (AtOLEO3) as an efficient tool for enhancing triacylglycerol accumulation in the marine diatom Phaeodactylum tricornutum
Cited by: 44
Author(s): Nodumo Nokulunga Zulu, Jennifer Popko, Krzysztof Zienkiewicz, Pablo Tarazona, Cornelia Herrfurth, Ivo Feußner
Software Mentions: 1
Published: over 7 years ago

10.1038/s41416-019-0498-2

Anti-angiogenic effects of crenolanib are mediated by mitotic modulation independently of PDGFR expression
Cited by: 11
Author(s): Robert H. Berndsen, Cédric Castrogiovanni, Andrea Weiss, Magdalena Rausch, Marchien G. Dallinga, Marijana Miljkovic‐Licina, Ingeborg Klaassen, Patrick Meraldi, Judy R. van Beijnum, Patrycja Nowak-Śliwińska
Software Mentions: 1
Published: over 5 years ago

10.1093/brain/awz297

Glycine receptor autoantibodies disrupt inhibitory neurotransmission
Cited by: 41
Author(s): Sarah Crisp, Curt B. Dixon, Leslie Jacobson, E Chabrol, Sarosh R. Irani, Maria Isabel Leite, Guy Leschziner, Seán J. Slaght, Angela Vincent, Dimitri M. Kullmann
Software Mentions: 1
Published: about 5 years ago

10.26508/lsa.201800135

Centrosome guides spatial activation of Rac to control cell polarization and directed cell migration
Cited by: 15
Author(s): Hung Wei Cheng, Cheng Te Hsiao, Yin-Quan Chen, Chi Ming Huang, Seng I. Chan, Arthur Chiou, Jean Cheng Kuo
Software Mentions: 1
Published: almost 6 years ago

10.26508/lsa.202000981

nNOS regulates ciliated cell polarity, ciliary beat frequency, and directional flow in mouse trachea
Cited by: 5
Author(s): Anatoly Mikhailik, Tatyana V. Michurina, Krikor Dikranian, Stephen Hearn, Vladimir I Maxakov, Saul S. Siller, Ken‐Ichi Takemaru, Grigori Enikolopov, Natalia Peunova
Software Mentions: 1
Published: over 3 years ago

10.1186/1475-2875-12-41

Cytoplasmic free Ca2+ is essential for multiple steps in malaria parasite egress from infected erythrocytes
Cited by: 48
Author(s): Svetlana Glushakova, Vladimir A. Lizunov, Paul S. Blank, Kamran Melikov, Glen Humphrey, Joshua Zimmerberg
Software Mentions: 1
Published: almost 12 years ago

10.17912/micropub.biology.000396

The IFT20 homolog in Caenorhabditis elegans is required for ciliogenesis and cilia-mediated behavior.
Cited by: 2
Author(s): Ana R. G. De-Castro, Joana Quintas-Gonçalves, Tiago Silva-Ribeiro, Diogo R. M. Rodrigues, Maria J. G. De-Castro, Carla Manuela Abreu, Tiago J. Dantas
Software Mentions: 1
Published: over 3 years ago

10.1186/s13041-018-0374-7

Excitation wavelength optimization improves photostability of ASAP-family GEVIs
Cited by: 9
Author(s): Fang Xu, Dong-Qing Shi, Pak-Ming Lau, Michael Z. Lin, Guo-Qiang Bi
Software Mentions: 1
Published: over 6 years ago

10.1016/j.molcel.2020.06.008

Pharmaceutical-Grade Rigosertib Is a Microtubule-Destabilizing Agent
Cited by: 19
Author(s): Marco Jost, Yu‐Wen Chen, Luke A. Gilbert, Max A. Horlbeck, Lenno Krenning, Grégory Menchon, Ankit Rai, Min Y. Cho, Jacob J. Stern, A.E. Prota, Martin Kampmann, Anna Akhmanova, Michel O. Steinmetz, Marvin E. Tanenbaum, Jonathan S. Weissman
Software Mentions: 1
Published: over 4 years ago

10.1186/s13024-019-0354-0

Promoting tau secretion and propagation by hyperactive p300/CBP via autophagy-lysosomal pathway in tauopathy
Cited by: 64
Author(s): Xu Chen, Yaqiao Li, Chao Wang, Yong Tang, Sue-Ann Mok, Richard Tsai, Julio C. Rojas, Anna Karydas, Bruce L. Miller, Adam L. Boxer, Jason E. Gestwicki, Michelle R. Arkin, Ana María Cuervo, Li Gan
Software Mentions: 1
Published: almost 5 years ago

10.15252/msb.20145352

From intracellular signaling to population oscillations: bridging size‐ and time‐scales in collective behavior
Cited by: 54
Author(s): Allyson E. Sgro, David J. Schwab, Javad Noorbakhsh, Troy Mestler, Pankaj Mehta, Thomas Gregor
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13567-018-0598-7

Visualisation and characterisation of mononuclear phagocytes in the chicken respiratory tract using CSF1R-transgenic chickens
Cited by: 16
Author(s): Kate Sutton, Teresa Costa, Andreas Alber, Karen Bryson, Dominika Borowska, Adam Balic, P. Kaiser, Mark P. Stevens, Lonneke Vervelde
Software Mentions: 1
Published: about 6 years ago

10.3390/v6041612

Superresolution Imaging of Human Cytomegalovirus vMIA Localization in Sub-Mitochondrial Compartments
Cited by: 27
Author(s): Shivaprasad Bhuvanendran, K. Salka, Kristin Rainey, Sen Chandra Sreetama, Elizabeth D. Williams, Margretha Leeker, Vidhya Prasad, Jonathan Boyd, George H. Patterson, Jyoti K. Jaiswal, Anamaris M. Colberg-Poley
Software Mentions: 1
Published: over 10 years ago

10.1097/j.pain.0000000000001890

Sensitization of knee-innervating sensory neurons by tumor necrosis factor-α-activated fibroblast-like synoviocytes: an in vitro, coculture model of inflammatory pain
Cited by: 19
Author(s): Sampurna Chakrabarti, Zoe Hore, Luke A. Pattison, Sylvine Lalnunhlimi, Charity N. Bhebhe, Gerard Callejo, D Bulmer, Leonie S. Taams, Franziska Denk, Ewan St. John Smith
Software Mentions: 1
Published: over 4 years ago

10.7717/peerj.553

Effects of deuterium oxide on cell growth and vesicle speed in RBL-2H3 cells
Cited by: 14
Author(s): Roshni S Kalkur, Andrew C Ballast, Ashley R Triplett, Kathrin Spendier
Software Mentions: 1
Published: about 10 years ago

10.1186/1746-4811-7-27

Variable-angle total internal reflection fluorescence microscopy of intact cells of Arabidopsis thaliana
Cited by: 50
Author(s): Yinglang Wan, William M. Ash, Lusheng Fan, Huai-Qin Hao, Myung K. Kim, Jinxing Lin
Software Mentions: 1
Published: about 13 years ago

10.1186/s13007-019-0459-z

Design of a comprehensive microfluidic and microscopic toolbox for the ultra-wide spatio-temporal study of plant protoplasts development and physiology
Cited by: 14
Author(s): Kaori Sakai, Florence Charlot, Thomas Le Saux, Sandrine Bonhomme, Fabien Nogué, Jean-Christophe Palauqui, Jacques Fattaccioli
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.2001264

A coordinated DNA damage response promotes adult quiescent neural stem cell activation
Cited by: 32
Author(s): Lara Barazzuol, Limei Ju, Penny A. Jeggo
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pbio.3001334

The transcription factor LAG-1/CSL plays a Notch-independent role in controlling terminal differentiation, fate maintenance, and plasticity of serotonergic chemosensory neurons
Cited by: 4
Author(s): Miren Maicas, Ángela Jimeno-Martín, Andrea Millán-Trejo, Mark J. Alkema, Nuria Flames
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pbio.1002029

Electrochemical Regulation of Budding Yeast Polarity
Cited by: 23
Author(s): Armin Haupt, Alexis N. Campetelli, Daria Bonazzi, Matthieu Piel, Fred Chang, Nicolas Minc
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pcbi.1005007

The Integrated Role of Wnt/β-Catenin, N-Glycosylation, and E-Cadherin-Mediated Adhesion in Network Dynamics
Cited by: 18
Author(s): Diego A. Vargas, Mingzhe Sun, Khikmet Sadykov, Maria A. Kukuruzinska, Muhammad H. Zaman
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pgen.1006582

The Replisomes Remain Spatially Proximal throughout the Cell Cycle in Bacteria
Cited by: 42
Author(s): Sarah Mangiameli, Brian T. Veit, Houra Merrikh, Paul A. Wiggins
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pgen.1009056

Cells with loss-of-heterozygosity after exposure to ionizing radiation in Drosophila are culled by p53-dependent and p53-independent mechanisms
Cited by: 3
Author(s): Jeremy Brown, Inle Bush, Justine Bozon, Tin Tin Su
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pgen.1004644

The Vesicle Protein SAM-4 Regulates the Processivity of Synaptic Vesicle Transport
Cited by: 44
Author(s): Qun Zheng, Shikha Ahlawat, Anneliese M. Schaefer, Tim Mahoney, Sandhya P. Koushika, Michael L. Nonet
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pgen.1005484

RAB-10-Dependent Membrane Transport Is Required for Dendrite Arborization
Cited by: 71
Author(s): Wei Zou, Smita Yadav, Laura DeVault, Yuh Nung Jan, David R. Sherwood
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0204957

Regulation of epithelial migration by epithelial cell adhesion molecule requires its Claudin-7 interaction domain
Cited by: 14
Author(s): Angela I.M. Barth, Honesty Kim, Ingmar H. Riedel-Kruse
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0080136

Drosophila Growth Cones Advance by Forward Translocation of the Neuronal Cytoskeletal Meshwork In Vivo
Cited by: 27
Author(s): Douglas H. Roossien, Phillip Lamoureux, David Van Vactor, Kyle E. Miller
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0038624

Antibiotic Transport in Resistant Bacteria: Synchrotron UV Fluorescence Microscopy to Determine Antibiotic Accumulation with Single Cell Resolution
Cited by: 61
Author(s): Slávka Kaščáková, Laure Maigre, Jacqueline Chevalier, Matthieu Réfrégiers, Jean‐Marie Pagès
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0180353

Characterization of kinesin switch I mutations that cause hereditary spastic paraplegia
Cited by: 21
Author(s): Scott Jennings, Madeline Chenevert, Liqiong Liu, Madhusoodanan Mottamal, Edward Wojcik, Thomas M. Huckaba
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0063072

The Effect of an Intervening Promoter Nucleosome on Gene Expression
Cited by: 8
Author(s): Rasesh Y. Parikh, Harold D. Kim
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0124629

Reed-Sternberg Cells Form by Abscission Failure in the Presence of Functional Aurora B Kinase
Cited by: 11
Author(s): Alexandra T. P. Carvalho, Hélder Maiato, André F. Maia, Sylvie Ribeiro, Patrícia Pontes, Wendy A. Bickmore, William C. Earnshaw, Clara Sambade
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0019680

Force Generation upon T Cell Receptor Engagement
Cited by: 160
Author(s): Julien Husson, Karine Chemin, Armelle Bohineust, Claire Hivroz, Nelly Henry
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0169205

Leptin-Induced Endothelium-Independent Vasoconstriction in Thoracic Aorta and Pulmonary Artery of Spontaneously Hypertensive Rats: Role of Calcium Channels and Stores
Cited by: 10
Author(s): Samantha Gomart, Caroline Gaudreau-Ménard, Pascale Jespers, Ömer Gürkan Dilek, Emeline Hupkens, Aliénor Hanthazi, Robert Naeije, Christian Mélot, Nathalie Labranche, Laurence Dewachter, Kathleen Mc Entee
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0090387

Ex Vivo Expanded Human Regulatory T Cells Delay Islet Allograft Rejection via Inhibiting Islet-Derived Monocyte Chemoattractant Protein-1 Production in CD34+ Stem Cells-Reconstituted NOD-scid IL2rγnull Mice
Cited by: 46
Author(s): Fang Xiao, Liang Ma, Min Zhao, Guo-Cai Huang, Vincenzo Mirenda, Anthony Dorling, Robert I. Lechler, Giovanna Lombardi
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0227286

Fast quantitative time lapse displacement imaging of endothelial cell invasion
Cited by: 6
Author(s): Christian Steuwe, Marie‐Mo Vaeyens, Álvaro Jorge-Peñas, Célie Cokelaere, Johan Hofkens, Maarten B. J. Roeffaers, Hans Van Oosterwyck
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0194859

Influence of fast advective flows on pattern formation of Dictyostelium discoideum
Cited by: 9
Author(s): Torsten Eckstein, Estefania Vidal-Henriquez, Albert Bae, V. S. Zykov, Eberhard Bodenschatz, Azam Gholami
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0206104

Superresolution microscopy with novel BODIPY-based fluorophores
Cited by: 12
Author(s): Amy M. Bittel, Isaac S. Saldivar, Nick J. Dolman, Xiaolin Nan, Summer L. Gibbs
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0219708

Advanced 2D/3D cell migration assay for faster evaluation of chemotaxis of slow-moving cells
Cited by: 9
Author(s): Lea Tomásová, Zeno Guttenberg, Bernd Hoffmann, Rudolf Merkel
Software Mentions: 1
Published: over 5 years ago