Ecosyste.ms: Papers

10.7554/eLife.53933

Heterogeneous T cell motility behaviors emerge from a coupling between speed and turning in vivo
Cited by: 33
Author(s): Elizabeth R. Jerison, Stephen R. Quake
Software Mentions: 6
Published: about 4 years ago

10.1038/s41598-018-25015-5

Metabolic systems analysis of LPS induced endothelial dysfunction applied to sepsis patient stratification
Cited by: 22
Author(s): Sarah McGarrity, Ósk Anuforo, Haraldur Halldórsson, Andreas Bergmann, Skarphéđinn Halldórsson, Sirus Palsson, H Henriksen, Pär I. Johansson, Óttar Rolfsson
Software Mentions: 5
Published: about 6 years ago

10.7554/eLife.63093

MITF reprograms the extracellular matrix and focal adhesion in melanoma
Cited by: 42
Author(s): Ramile Dilshat, Valerie Fock, Colin Kenny, Ilse Gerritsen, Romain Lasseur, Jana Trávníčková, Ossia M. Eichhoff, Philipp Cerny, Katrín Möller, Sara Sigurbjörnsdóttir, Kritika Kirty, Berglind O. Einarsdottir, Phil F. Cheng, Mitchell P. Levesque, Robert A. Cornell, E. Elizabeth Patton, Lionel Larue, Marie de Tayrac, Erna Magnúsdóttir, Margrét H. Ögmundsdóttir, Eirı́kur Steingrı́msson
Software Mentions: 5
Published: over 3 years ago

10.7554/eLife.50601

Cell-type-specific control of basolateral amygdala neuronal circuits via entorhinal cortex-driven feedforward inhibition
Cited by: 15
Author(s): Eartha Mae Guthman, Joshua D. Garcia, Ming Ma, Philip Chu, Serapio M. Baca, Katharine R. Smith, Diego Restrepo, Molly M. Huntsman
Software Mentions: 5
Published: over 4 years ago

10.1523/ENEURO.0211-20.2020

Regulatory Elements Inserted into AAVs Confer Preferential Activity in Cortical Interneurons
Cited by: 11
Author(s): Anna Noren Rubin, Ruchi Malik, Kathleen K.A. Cho, Kenneth J. Lim, Susan Lindtner, Sarah E. Robinson Schwartz, Daniel Vogt, Vikaas S. Sohal, John L.R. Rubenstein
Software Mentions: 4
Published: over 3 years ago

10.1126/sciadv.abg5982

Single-cell analyses unravel cell type–specific responses to a vitamin D analog in prostatic precancerous lesions
Cited by: 9
Author(s): Mohamed A. Abu el Maaty, Élise Grelet, Céline Keime, Anna‐Isavella Rerra, Justine Gantzer, C. Emprou, Julie Terzic, Régis Lutzing, Jean‐Marc Bornert, Gilles Laverny, Daniel Metzger
Software Mentions: 4
Published: almost 3 years ago

10.1371/journal.pgen.1009526

Expression of the cancer-associated DNA polymerase ε P286R in fission yeast leads to translesion synthesis polymerase dependent hypermutation and defective DNA replication
Cited by: 5
Author(s): Ignacio Soriano, Enrique Vázquez, Nagore de León, Sibyl Bertrand, Ellen Heitzer, Sophia Toumazou, Zhihan Bo, Claire Palles, Chen-Chun Pai, Timothy C. Humphrey, Ian Tomlinson, Sue Cotterill, Stephen Kearsey
Software Mentions: 4
Published: almost 3 years ago

10.7554/eLife.30657

Wilms Tumor 1b defines a wound-specific sheath cell subpopulation associated with notochord repair
Cited by: 21
Author(s): Juan Carlos Lopez-Baez, Daniel J. Simpson, Laura Lleras Forero, Zhiqiang Zeng, Hannah Brunsdon, Angela Salzano, Alessandro Brombin, Cameron Wyatt, Witold M. Rybski, Leonie F. A. Huitema, Rodney M. Dale, Koichi Kawakami, Christoph Englert, Tamir Chandra, Stefan Schulte‐Merker, Nicholas D. Hastie, E. Elizabeth Patton
Software Mentions: 4
Published: over 6 years ago

10.7554/eLife.30352

Pedunculopontine glutamatergic neurons control spike patterning in substantia nigra dopaminergic neurons
Cited by: 31
Author(s): Daniel J. Galtieri, Chad M Estep, David L. Wokosin, Stephen F. Traynelis, D. James Surmeier
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-76272-2

Lateral diffusion of CD14 and TLR2 in macrophage plasma membrane assessed by raster image correlation spectroscopy and single particle tracking
Cited by: 6
Author(s): Sara Matarazzo, Markus Rose, Suman Ranjit, Michelle A. Digman, Dawn M. E. Bowdish, Jose M. Moran‐Mirabal
Software Mentions: 4
Published: over 3 years ago

10.7554/eLife.35322

The nucleosomal acidic patch relieves auto-inhibition by the ISWI remodeler SNF2h
Cited by: 51
Author(s): Nathan Gamarra, Shirley Johnson, Michael J. Trnka, Alma L. Burlingame, Geeta J. Narlikar
Software Mentions: 3
Published: about 6 years ago

10.3389/fninf.2014.00080

SIMA: Python software for analysis of dynamic fluorescence imaging data
Cited by: 155
Author(s): Patrick Kaifosh, Jeffrey D. Zaremba, Nathan Danielson, Attila Losonczy
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0203040

Characterization of EGF-guided MDA-MB-231 cell chemotaxis in vitro using a physiological and highly sensitive assay system
Cited by: 19
Author(s): Verena Biswenger, Nina Baumann, Johannes Jürschick, Martina Häckl, Christopher Battle, Jan Schwarz, Elias Horn, Roman Zantl
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-48455-z

High-speed device synchronization in optical microscopy with an open-source hardware control platform
Cited by: 8
Author(s): Marshall J. Colville, Sangwoo Park, Warren R. Zipfel, Matthew J. Paszek
Software Mentions: 3
Published: over 4 years ago

10.7554/eLife.36898

Mitotic progression, arrest, exit or death relies on centromere structural integrity, rather than de novo transcription
Cited by: 16
Author(s): Marco Novais-Cruz, Maria Alba Abad, Wilfred F. J. van IJcken, Niels Galjart, A. Arockia Jeyaprakash, Hélder Maiato, Cristina Ferrás
Software Mentions: 3
Published: almost 6 years ago

10.1242/jcs.230714

Anterior-enriched filopodia create appearance of asymmetric membrane microdomains in polarizing<i>C. elegans</i>zygotes
Cited by: 13
Author(s): Nisha Hirani, Rukshala Illukkumbura, Tom Bland, Grégoire Mathonnet, Delphine Suhner, Anne-Cécile Reymann, Nathan W. Goehring
Software Mentions: 3
Published: over 5 years ago

10.1126/sciadv.abg3013

<i>C9orf72</i> -derived arginine-containing dipeptide repeats associate with axonal transport machinery and impede microtubule-based motility
Cited by: 51
Author(s): Laura Fumagalli, Florence L. Young, Steven Boeynaems, Mathias De Decker, Arpan R. Mehta, Ann Swijsen, Raheem Fazal, Wenting Guo, Matthieu Moisse, Jimmy Beckers, Lieselot Dedeene, Bhuvaneish T. Selvaraj, Tijs Vandoorne, Vanesa Madan, Marka van Blitterswijk, Denitza Raitcheva, Alexander McCampbell, Koen Poesen, Aaron D. Gitler, Philipp Koch, Pieter Vanden Berghe, Dietmar Rudolf Thal, Cathérine Verfaillie, Siddharthan Chandran, Ludo Van Den Bosch, Simon L. Bullock, Philip Van Damme
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.pcbi.1004995

Cellular Interrogation: Exploiting Cell-to-Cell Variability to Discriminate Regulatory Mechanisms in Oscillatory Signalling
Cited by: 7
Author(s): Javier Estrada, Natalie Andrew, Daniel G. Gibson, Frederick Chang, Florian Gnad, Jeremy Gunawardena
Software Mentions: 3
Published: almost 8 years ago

10.1093/braincomms/fcaa146

Tumour necrosis factor induces increased production of extracellular amyloid-β- and α-synuclein-containing aggregates by human Alzheimer’s disease neurons
Cited by: 14
Author(s): Daniel R. Whiten, Philip W. Brownjohn, Steven J. Moore, Suman De, Alessio Strano, Yukun Zuo, Moritz Haneklaus, David Klenerman, Frederick J. Livesey
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-017-12747-z

Role of autophagy in cell-penetrating peptide transfection model
Cited by: 23
Author(s): Moataz Dowaidar, Maxime Gestin, Carmine Pasquale Cerrato, Mohammed Hakim Jafferali, Helerin Margus, Paula Ann Kivistik, Kariem Ezzat, Einar Hallberg, Margus Pooga, Mattias Hällbrink, Ülo Langel
Software Mentions: 3
Published: over 6 years ago

10.1186/s13075-021-02588-7

Hyaluronic acid synthesis, degradation, and crosslinking in equine osteoarthritis: TNF-α-TSG-6-mediated HC-HA formation
Cited by: 5
Author(s): Diana C. Fasanello, Jin Su, Siyu Deng, Rose T. Yin, Marshall J. Colville, Joshua M. Berenson, Carolyn M. Kelly, Heather Freer, Alicia Rollins, Bettina Wagner, Felipe Rivas, Adam R. Hall, Elaheh Rahbar, Paul L. DeAngelis, Matthew J. Paszek, Heidi L. Reesink
Software Mentions: 3
Published: over 2 years ago

10.26508/lsa.201800242

Mechanistic aspects of maltotriose-conjugate translocation to the Gram-negative bacteria cytoplasm
Cited by: 11
Author(s): Estelle Dumont, Julia Vergalli, Jelena Pajović, Satya Prathyusha Bhamidimarri, Koldo Morante, Jiajun Wang, Dmitrijs Lubriks, Edgars Sūna, Robert A. Stavenger, Mathias Winterhalter, Matthieu Réfrégiers, Jean‐Marie Pagès
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0240127

Motion magnification analysis of microscopy videos of biological cells
Cited by: 3
Author(s): Oren Shabi, Sari Natan, Avraham Kolel, Angshuman Mukherjee, Oren Tchaicheeyan, Haguy Wolfenson, Nahum Kiryati, Ayelet Lesman
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-017-01543-4

Integrated single- and two-photon light sheet microscopy using accelerating beams
Cited by: 34
Author(s): Peeter Piksarv, Dominik Marti, Tuan Le, Angelika Unterhuber, Lindsey H. Forbes, Melissa R. Andrews, A. Stingl, Wolfgang Drexler, Peter E. Andersen, Kishan Dholakia
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0095113

Heterogeneous Intracellular Trafficking Dynamics of Brain-Derived Neurotrophic Factor Complexes in the Neuronal Soma Revealed by Single Quantum Dot Tracking
Cited by: 26
Author(s): Anke Vermehren-Schmaedick, Wesley D. Krueger, Thomas Jacob, Damien Ramunno-Johnson, Agnieszka Bałkowiec, Keith A. Lidke, Tania Q. Vu
Software Mentions: 2
Published: about 10 years ago

10.1186/s12917-021-02873-2

Investigation of synovial fluid lubricants and inflammatory cytokines in the horse: a comparison of recombinant equine interleukin 1 beta-induced synovitis and joint lavage models
Cited by: 6
Author(s): Amanda R. Watkins, Diana C. Fasanello, Darko Stefanovski, Sydney Schurer, Katherine Caracappa, Albert D’Agostino, Emily Costello, Heather Freer, Alicia Rollins, Claire Read, Jin Su, Marshall J. Colville, Matthew J. Paszek, Bettina Wagner, Heidi L. Reesink
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pone.0116037

Multi-Scale Imaging and Informatics Pipeline for In Situ Pluripotent Stem Cell Analysis
Cited by: 7
Author(s): Bryan R. Gorman, Junjie Lu, Anna Baccei, Nathan Lowry, Jeremy E. Purvis, Rami Mangoubi, Paul H. Lerou
Software Mentions: 2
Published: over 9 years ago

10.1111/bph.13023

TRPV4 and K_Caion channels functionally couple as osmosensors in the paraventricular nucleus
Cited by: 42
Author(s): Claire H. Feetham, Nicolas Nunn, Rebecca Lewis, Caroline Dart, Richard Barrett‐Jolley
Software Mentions: 2
Published: over 9 years ago

10.3390/jimaging5120088

Software-Based Three-Dimensional Deconvolution Microscopy of Cytoskeletal Proteins in Cultured Fibroblast Using Open-Source Software and Open Hardware
Cited by: 2
Author(s): Kazuo Katoh
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0163025

Forced Trefoil Factor Family Peptide 3 (TFF3) Expression Reduces Growth, Viability, and Tumorigenicity of Human Retinoblastoma Cell Lines
Cited by: 12
Author(s): Jan Große-Kreul, Maike Busch, Claudia Winter, Stefanie Pikos, Harald Stephan, Nicole Dünker
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pbio.3000457

Cell confinement reveals a branched-actin independent circuit for neutrophil polarity
Cited by: 50
Author(s): Brian R. Graziano, Jason P. Town, E Sitarska, Tamas L. Nagy, Miha Fošnarič, Samo Penič, Aleš Iglič, Veronika Kralj‐Iglič, Nir S. Gov, Alba Diz-Muñoz, Orion D. Weiner
Software Mentions: 2
Published: over 4 years ago

10.1016/j.cels.2017.10.013

Asymmetry between Activation and Deactivation during a Transcriptional Pulse
Cited by: 12
Author(s): Lee Dunham, Hiroshi Momiji, Claire V. Harper, Polly Downton, Kirsty Hey, A. McNamara, Karen Featherstone, David G. Spiller, D.A.J. Rand, Bärbel Finkenstädt, Michael R. H. White, Julian Davis
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms21082803

Single-Molecule Super-Resolution Microscopy Reveals Heteromeric Complexes of MET and EGFR upon Ligand Activation
Cited by: 23
Author(s): Marie-Lena I. E. Harwardt, Mark S. Schröder, Yunqing Li, Sebastian Malkusch, Petra Freund, Shashi Gupta, Nebojša Janjić, Sebastian Strauss, Ralf Jungmann, Marina S. Dietz, Mike Heilemann
Software Mentions: 2
Published: about 4 years ago

10.1128/JVI.00319-20

Loss of the Nuclear Protein RTF2 Enhances Influenza Virus Replication
Cited by: 3
Author(s): Bing Shao Chia, Bo Li, Ang Cui, Thomas Eisenhaure, Raktima Raychowdhury, David Lieb, Nir Hacohen
Software Mentions: 2
Published: over 3 years ago

10.7554/eLife.60126

Autoregulatory control of microtubule binding in doublecortin-like kinase 1
Cited by: 14
Author(s): Regina L. Agulto, Melissa M Rogers, Tracy Tan, Amrita Ramkumar, Ashlyn M Downing, Hannah Bodin, Julia Castro, Dan W. Nowakowski, Kassandra M. Ori-McKenney
Software Mentions: 2
Published: almost 3 years ago

10.1007/s00216-020-03084-8

Superresolving the kidney—a practical comparison of fluorescence nanoscopy of the glomerular filtration barrier
Cited by: 7
Author(s): Lucia Cs Wunderlich, Florian Ströhl, Stefan Ströhl, Oliver Vanderpoorten, Luca Mascheroni, Clemens F. Kaminski
Software Mentions: 2
Published: over 3 years ago

10.3390/cells8121541

A Software Tool for High-Throughput Real-Time Measurement of Intensity-Based Ratio-Metric FRET
Cited by: 6
Author(s): Masoud Ramuz, Alveera Hasan, Lena Gruscheski, Ivan Diakonov, Nikoleta Pavlaki, Viacheslav O. Nikolaev, Siân E. Harding, Chris Dunsby, Julia Gorelik
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.36312

RNA-directed activation of cytoplasmic dynein-1 in reconstituted transport RNPs
Cited by: 67
Author(s): Mark A McClintock, Carly I Dix, Christopher M. Johnson, Stephen H. McLaughlin, Rory J Maizels, Ha Thi Hoang, Simon L. Bullock
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0221245

Predicting the future direction of cell movement with convolutional neural networks
Cited by: 11
Author(s): S. Nishimoto, Yuta Tokuoka, Takahiro Yamada, Noriko Hiroi, Akira Funahashi
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0216251

A 61% lighter cell culture dish to reduce plastic waste
Cited by: 4
Author(s): Pedro Réu, Gustav Svedberg, Lars Hässler, Bjørn Møller, Helene Andersson Svahn, Jesper Gantelius
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.68579

Live-cell single-molecule tracking highlights requirements for stable Smc5/6 chromatin association in vivo
Cited by: 18
Author(s): Thomas J. Etheridge, Desirée Villahermosa, Eduard Campillo-Funollet, Alex Herbert, Anja Irmisch, Adam T. Watson, Hung Quang Dang, Mark Osborne, Antony W. Oliver, Johanne M. Murray
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pcbi.1005041

Direct Correlation between Motile Behavior and Protein Abundance in Single Cells
Cited by: 59
Author(s): Y. Dufour, Sébastien Gillet, Nicholas Frankel, Douglas B. Weibel, Thierry Emonet
Software Mentions: 2
Published: over 7 years ago

10.1038/s41419-020-03091-8

BioID-based proteomic analysis of the Bid interactome identifies novel proteins involved in cell-cycle-dependent apoptotic priming
Cited by: 4
Author(s): Robert Pedley, Louise King, Venkatesh Mallikarjun, Pengbo Wang, Joe Swift, Keith Brennan, Andrew Gilmore
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pbio.3000100

A transient helix in the disordered region of dynein light intermediate chain links the motor to structurally diverse adaptors for cargo transport
Cited by: 36
Author(s): Ricardo Celestino, Morkos A. Henen, José B. Gama, Cátia A. Carvalho, Maxwell C. McCabe, Daniel José Barbosa, Alexandra Born, Parker J. Nichols, Alexandra T. P. Carvalho, Reto Gassmann, Beat Vögeli
Software Mentions: 2
Published: over 5 years ago

10.1194/jlr.M050229

High confidence proteomic analysis of yeast LDs identifies additional droplet proteins and reveals connections to dolichol synthesis and sterol acetylation
Cited by: 91
Author(s): Erin Currie, Xiuling Guo, Romain Christiano, Chandramohan Chitraju, Nora Kory, Kathryn Harrison, Joel T. Haas, Tobias C. Walther, Robert V. Farese
Software Mentions: 2
Published: almost 10 years ago

10.1128/mBio.00210-19

Bacterial Swarming Reduces Proteus mirabilis and Vibrio parahaemolyticus Cell Stiffness and Increases β-Lactam Susceptibility
Cited by: 13
Author(s): George K. Auer, Piercen M. Oliver, Manohary Rajendram, Ti-Yu Lin, Qing Yao, Grant J. Jensen, Douglas B. Weibel
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-019-48113-4

Silver ions cause oscillation of bacterial length of Escherichia coli
Cited by: 8
Author(s): Venkata Rao Krishnamurthi, Jingyi Chen, Yong Wang
Software Mentions: 2
Published: almost 5 years ago

10.1038/ismej.2017.1

Divergent extremes but convergent recovery of bacterial and archaeal soil communities to an ongoing subterranean coal mine fire
Cited by: 90
Author(s): Sang Hoon Lee, Jackson W Sorensen, Keara L. Grady, Tammy C Tobin, Ashley Shade
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.51421

Epigenetic memory independent of symmetric histone inheritance
Cited by: 26
Author(s): Daniel S Saxton, Jasper Rine
Software Mentions: 2
Published: over 4 years ago

10.1074/mcp.M115.054064

Identification of Evening Complex Associated Proteins in Arabidopsis by Affinity Purification and Mass Spectrometry
Cited by: 148
Author(s): He Huang, Sophie Alvarez, Rebecca K. Bindbeutel, Zhouxin Shen, Michael J. Naldrett, Bradley S. Evans, Steven P. Briggs, Leslie M. Hicks, Steve A. Kay, Dmitri A. Nusinow
Software Mentions: 2
Published: over 8 years ago

10.1016/j.xpro.2020.100084

A Protocol to Engineer Bacteriophages for Live-Cell Imaging of Bacterial Prophage Induction Inside Mammalian Cells
Cited by: 2
Author(s): Katie Bodner, Arin L. Melkonian, Markus W. Covert
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.ppat.1006532

Salmonella enterica serovar-specific transcriptional reprogramming of infected cells
Cited by: 24
Author(s): Sebastian Hannemann, Jorge E. Galán
Software Mentions: 2
Published: almost 7 years ago

10.3389/fncel.2018.00410

Evidence of Müller Glia Conversion Into Retina Ganglion Cells Using Neurogenin2
Cited by: 26
Author(s): Roberta Pereira de Melo Guimarães, Bruna Soares Landeira, Diego Marques Coelho, Daiane Cristina Ferreira Golbert, Mariana S. Silveira, Rafael Linden, Ricardo Augusto de Melo Reis, Marcos Romualdo Costa
Software Mentions: 2
Published: over 5 years ago

10.3389/fnsyn.2021.671288

Visualizing Synaptic Multi-Protein Patterns of Neuronal Tissue With DNA-Assisted Single-Molecule Localization Microscopy
Cited by: 5
Author(s): K. Narayanasamy, Aleksandar Stojic, Yunqing Li, Steffen Sass, Marina Hesse, Nina S. Deußner-Helfmann, Marina S. Dietz, Thomas Kuner, Maja Klevanski, Mike Heilemann
Software Mentions: 2
Published: almost 3 years ago

10.1063/1.5144487

A versatile, multi-laser twin-microscope system for light-sheet imaging
Cited by: 9
Author(s): Kevin Keomanee-Dizon, Scott E. Fraser, Thai V. Truong
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-018-28692-4

Structural analyses of FERM domain-mediated membrane localization of FARP1
Cited by: 11
Author(s): Yi Chun Kuo, Xiaojing He, Andrew J. Coleman, Yu‐Ju Chen, Pranathi Dasari, Thomas Biederer, Xuewu Zhang
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.26990

Actin-based protrusions of migrating neutrophils are intrinsically lamellar and facilitate direction changes
Cited by: 98
Author(s): Lillian K. Fritz‐Laylin, Megan Riel-Mehan, Bi-Chang Chen, Samuel J. Lord, Thomas D. Goddard, Thomas E. Ferrin, Susan Nicholson-Dykstra, Henry N. Higgs, Graham Johnson, Eric Betzig, R. Dyche Mullins
Software Mentions: 2
Published: over 6 years ago

10.1186/1475-2875-12-41

Cytoplasmic free Ca2+ is essential for multiple steps in malaria parasite egress from infected erythrocytes
Cited by: 48
Author(s): Svetlana Glushakova, Vladimir A. Lizunov, Paul S. Blank, Kamran Melikov, Glen Humphrey, Joshua Zimmerberg
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0063072

The Effect of an Intervening Promoter Nucleosome on Gene Expression
Cited by: 8
Author(s): Rasesh Y. Parikh, Harold D. Kim
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0180353

Characterization of kinesin switch I mutations that cause hereditary spastic paraplegia
Cited by: 21
Author(s): Scott Jennings, Madeline Chenevert, Liqiong Liu, Madhusoodanan Mottamal, Edward Wojcik, Thomas M. Huckaba
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.bbrc.2020.06.118

Probing the unfolded protein response in long-lived naked mole-rats
Cited by: 3
Author(s): Zhen Du, Sampurna Chakrabarti, Yavuz Kulaberoglu, Ewan St. John Smith, Christopher M. Dobson, Laura S. Itzhaki, Janet R. Kumita
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0038624

Antibiotic Transport in Resistant Bacteria: Synchrotron UV Fluorescence Microscopy to Determine Antibiotic Accumulation with Single Cell Resolution
Cited by: 61
Author(s): Slávka Kaščáková, Laure Maigre, Jacqueline Chevalier, Matthieu Réfrégiers, Jean‐Marie Pagès
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0080136

Drosophila Growth Cones Advance by Forward Translocation of the Neuronal Cytoskeletal Meshwork In Vivo
Cited by: 27
Author(s): Douglas H. Roossien, Phillip Lamoureux, David Van Vactor, Kyle E. Miller
Software Mentions: 1
Published: over 10 years ago

10.26508/lsa.202000981

nNOS regulates ciliated cell polarity, ciliary beat frequency, and directional flow in mouse trachea
Cited by: 5
Author(s): Anatoly Mikhailik, Tatyana V. Michurina, Krikor Dikranian, Stephen Hearn, Vladimir I Maxakov, Saul S. Siller, Ken‐Ichi Takemaru, Grigori Enikolopov, Natalia Peunova
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0204957

Regulation of epithelial migration by epithelial cell adhesion molecule requires its Claudin-7 interaction domain
Cited by: 14
Author(s): Angela I.M. Barth, Honesty Kim, Ingmar H. Riedel-Kruse
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1005484

RAB-10-Dependent Membrane Transport Is Required for Dendrite Arborization
Cited by: 71
Author(s): Wei Zou, Smita Yadav, Laura DeVault, Yuh Nung Jan, David R. Sherwood
Software Mentions: 1
Published: over 8 years ago

10.26508/lsa.201800135

Centrosome guides spatial activation of Rac to control cell polarization and directed cell migration
Cited by: 15
Author(s): Hung Wei Cheng, Cheng Te Hsiao, Yin-Quan Chen, Chi Ming Huang, Seng I. Chan, Arthur Chiou, Jean Cheng Kuo
Software Mentions: 1
Published: over 5 years ago

10.3762/bjnano.8.125

Evaluation of quantum dot conjugated antibodies for immunofluorescent labelling of cellular targets
Cited by: 24
Author(s): Jennifer E. Francis, David Mason, Raphaël Lévy
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12859-020-03727-8

EMU: reconfigurable graphical user interfaces for Micro-Manager
Cited by: 15
Author(s): Joran Deschamps, Jonas Ries
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pgen.1004644

The Vesicle Protein SAM-4 Regulates the Processivity of Synaptic Vesicle Transport
Cited by: 44
Author(s): Qun Zheng, Shikha Ahlawat, Anneliese M. Schaefer, Tim Mahoney, Sandhya P. Koushika, Michael L. Nonet
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pgen.1009056

Cells with loss-of-heterozygosity after exposure to ionizing radiation in Drosophila are culled by p53-dependent and p53-independent mechanisms
Cited by: 3
Author(s): Jeremy Brown, Inle Bush, Justine Bozon, Tin Tin Su
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pgen.1006582

The Replisomes Remain Spatially Proximal throughout the Cell Cycle in Bacteria
Cited by: 42
Author(s): Sarah Mangiameli, Brian T. Veit, Houra Merrikh, Paul A. Wiggins
Software Mentions: 1
Published: over 7 years ago

10.1093/brain/awz297

Glycine receptor autoantibodies disrupt inhibitory neurotransmission
Cited by: 41
Author(s): Sarah Crisp, Curt B. Dixon, Leslie Jacobson, E Chabrol, Sarosh R. Irani, Maria Isabel Leite, Guy Leschziner, Seán J. Slaght, Angela Vincent, Dimitri M. Kullmann
Software Mentions: 1
Published: over 4 years ago

10.1038/s42003-020-0787-6

High-contrast, synchronous volumetric imaging with selective volume illumination microscopy
Cited by: 36
Author(s): Thai V. Truong, Daniel B. Holland, Sara Madaan, Andrey Andreev, Kevin Keomanee-Dizon, Josh V Troll, Daniel E. S. Koo, Margaret J. McFall‐Ngai, Scott E. Fraser
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pcbi.1005007

The Integrated Role of Wnt/β-Catenin, N-Glycosylation, and E-Cadherin-Mediated Adhesion in Network Dynamics
Cited by: 18
Author(s): Diego A. Vargas, Mingzhe Sun, Khikmet Sadykov, Maria A. Kukuruzinska, Muhammad H. Zaman
Software Mentions: 1
Published: almost 8 years ago

10.1002/cbic.201100282

Subcellular Protein Localization by Using a Genetically Encoded Fluorescent Amino Acid
Cited by: 42
Author(s): Godefroid Charbon, Eric M. Brustad, Kevin A. Scott, Jiangyun Wang, Anders Løbner-Olesen, Peter G. Schultz, Christine Jacobs‐Wagner, Eli Chapman
Software Mentions: 1
Published: almost 13 years ago

10.3390/cells9122563

Filamin A Orchestrates Cytoskeletal Structure, Cell Migration and Stem Cell Characteristics in Human Seminoma TCam-2 Cells
Cited by: 6
Author(s): Harald Welter, Carola Herrmann, Thomas Fröhlich, Florian Flenkenthaler, Katja Eubler, Hubert Schorle, Daniel Nettersheim, Artur Mayerhofer, Annette Müller‐Taubenberger
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pbio.1002029

Electrochemical Regulation of Budding Yeast Polarity
Cited by: 23
Author(s): Armin Haupt, Alexis N. Campetelli, Daria Bonazzi, Matthieu Piel, Fred Chang, Nicolas Minc
Software Mentions: 1
Published: over 9 years ago

10.1038/s41416-019-0498-2

Anti-angiogenic effects of crenolanib are mediated by mitotic modulation independently of PDGFR expression
Cited by: 11
Author(s): Robert H. Berndsen, Cédric Castrogiovanni, Andrea Weiss, Magdalena Rausch, Marchien G. Dallinga, Marijana Miljkovic‐Licina, Ingeborg Klaassen, Patrick Meraldi, Judy R. van Beijnum, Patrycja Nowak-Śliwińska
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13104-021-05730-5

CPB-3 and CGH-1 localize to motile particles within dendrites in C. elegans PVD sensory neurons
Cited by: 1
Author(s): Kathrin Spendier, Eugenia C. Olesnicky, Daniel Forand, Margaret Wolf, Darrell J. Killian
Software Mentions: 1
Published: almost 3 years ago

10.1063/1.5113719

Automated sensing and splitting of stem cell colonies on microraft arrays
Cited by: 9
Author(s): Matthew DiSalvo, Nicole M. Smiddy, Nancy L. Allbritton
Software Mentions: 1
Published: over 4 years ago

10.1038/s41420-021-00412-4

Dexamethasone accelerates muscle regeneration by modulating kinesin-1-mediated focal adhesion signals
Cited by: 9
Author(s): Jong Wei Lin, Yongheng Huang, Yin-Quan Chen, Ting Yun Chuang, Tien Yun Lan, Yen Wenn Liu, Hung Wei Pan, Li Ru You, Yang Kao Wang, Keng Hui Lin, Arthur Chiou, Jean Cheng Kuo
Software Mentions: 1
Published: over 3 years ago

10.1186/s13068-017-0874-1

Heterologous co-expression of a yeast diacylglycerol acyltransferase (ScDGA1) and a plant oleosin (AtOLEO3) as an efficient tool for enhancing triacylglycerol accumulation in the marine diatom Phaeodactylum tricornutum
Cited by: 44
Author(s): Nodumo Nokulunga Zulu, Jennifer Popko, Krzysztof Zienkiewicz, Pablo Tarazona, Cornelia Herrfurth, Ivo Feußner
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pbio.3001334

The transcription factor LAG-1/CSL plays a Notch-independent role in controlling terminal differentiation, fate maintenance, and plasticity of serotonergic chemosensory neurons
Cited by: 4
Author(s): Miren Maicas, Ángela Jimeno-Martín, Andrea Millán-Trejo, Mark J. Alkema, Nuria Flames
Software Mentions: 1
Published: almost 3 years ago

10.1186/s13578-016-0108-4

Disruption of the Golgi protein Otg1 gene causes defective hormone secretion and aberrant glucose homeostasis in mice
Cited by: 5
Author(s): Guangxue Wang, Rongbo Li, Ying Yang, Liang Cai, Sheng Ding, Tian Xu, Min Han, Xiaohui Wu
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.cell.2013.11.025

A Bidirectional Circuit Switch Reroutes Pheromone Signals in Male and Female Brains
Cited by: 180
Author(s): Johannes Kohl, Aaron D. Ostrovsky, Shahar Frechter, Gregory S.X.E. Jefferis
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pbio.2001264

A coordinated DNA damage response promotes adult quiescent neural stem cell activation
Cited by: 32
Author(s): Lara Barazzuol, Limei Ju, Penny A. Jeggo
Software Mentions: 1
Published: about 7 years ago

10.3390/biomimetics4020033

Cell Culture Platforms with Controllable Stiffness for Chick Embryonic Cardiomyocytes
Cited by: 4
Author(s): María Luisa Durán-Pastén, Daniela Cortés, Alan E. Valencia-Amaya, Santiago King, Gertrudis Hortensia González-Gómez, Mathieu Hautefeuille
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2121-15-35

High resolution surface plasmon resonance imaging for single cells
Cited by: 72
Author(s): Alexander W. Peterson, Michael Halter, Alessandro Tona, Anne L. Plant
Software Mentions: 1
Published: over 9 years ago

10.1038/cddis.2015.51

Readthrough acetylcholinesterase (AChE-R) and regulated necrosis: pharmacological targets for the regulation of ovarian functions?
Cited by: 42
Author(s): Jan Blohberger, Lars Kunz, D. Einwang, U. Berg, Dieter Berg, Sergio R. Ojeda, Gregory A. Dissen, Thomas Fröhlich, Georg J. Arnold, Hermona Soreq, Hernán Lara, Artur Mayerhofer
Software Mentions: 1
Published: about 9 years ago

10.1016/j.cell.2016.04.034

Dynamics of Translation of Single mRNA Molecules In Vivo
Cited by: 370
Author(s): Xiao‐Wei Yan, Tim A. Hoek, Ronald D. Vale, Marvin E. Tanenbaum
Software Mentions: 1
Published: about 8 years ago

10.1016/j.celrep.2019.04.033

Comprehensive Genetic Characterization of Mitochondrial Ca2+ Uniporter Components Reveals Their Different Physiological Requirements In Vivo
Cited by: 43
Author(s): Roberta Tufi, T. P. Gleeson, Sophia von Stockum, Victoria L. Hewitt, Juliette J. Lee, Ana Terriente‐Felix, Álvaro Sánchez-Martínez, Elena Ziviani, Alexander J. Whitworth
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0133786

Small Molecule Inhibitors of Plasminogen Activator Inhibitor-1 Elicit Anti-Tumorigenic and Anti-Angiogenic Activity
Cited by: 37
Author(s): Veronica R. Placencio, Atsuhiko Ichimura, Toshio Miyata, Yves A. DeClerck
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13007-019-0459-z

Design of a comprehensive microfluidic and microscopic toolbox for the ultra-wide spatio-temporal study of plant protoplasts development and physiology
Cited by: 14
Author(s): Kaori Sakai, Florence Charlot, Thomas Le Saux, Sandrine Bonhomme, Fabien Nogué, Jean-Christophe Palauqui, Jacques Fattaccioli
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0171257

Engineering of mCherry variants with long Stokes shift, red-shifted fluorescence, and low cytotoxicity
Cited by: 54
Author(s): Yi Shen, Yingche Chen, Jiahui Wu, Nathan C. Shaner, Robert E. Campbell
Software Mentions: 1
Published: about 7 years ago

10.1039/c9sc05568a

Targeted cell imaging properties of a deep red luminescent iridium(<scp>iii</scp>) complex conjugated with a c-Myc signal peptide
Cited by: 32
Author(s): Adam H. Day, Martin H. Ubler, Hannah Best, Emyr Lloyd-Evans, Robert J. Mart, Ian A. Fallis, Rudolf Konrad Allemann, Eman A. H. Al-Wattar, Nathaniel I. Keymer, Niklaas J. Buurma, Simon J. A. Pope
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0048024

Alteration of Cellular Behavior and Response to PI3K Pathway Inhibition by Culture in 3D Collagen Gels
Cited by: 72
Author(s): Brian Fallica, Joseph S. Maffei, Shaun Villa, Guy Makin, Muhammad H. Zaman
Software Mentions: 1
Published: over 11 years ago

10.1007/s00412-018-0674-9

Defects in meiotic recombination delay progression through pachytene in Tex19.1−/− mouse spermatocytes
Cited by: 8
Author(s): James H Crichton, David Read, Ian R. Adams
Software Mentions: 1
Published: almost 6 years ago

10.1186/1746-4811-7-27

Variable-angle total internal reflection fluorescence microscopy of intact cells of Arabidopsis thaliana
Cited by: 50
Author(s): Yinglang Wan, William M. Ash, Lusheng Fan, Huai-Qin Hao, Myung K. Kim, Jinxing Lin
Software Mentions: 1
Published: over 12 years ago

10.1063/1.5038965

Serial integration of Dean-structured sample cores with linear inertial focussing for enhanced particle and cell sorting
Cited by: 6
Author(s): Paul M. Holloway, Jonathan Butement, Manjunath Hegde, Jonathan West
Software Mentions: 1
Published: almost 6 years ago