Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: Micro-Manager
https://packages.ecosyste.ms/registries/pypi.org/packages/Micro-Manager
Microscope hardware control
1 version
Latest release: about 1 year ago
Papers Mentioning Micro-Manager 260
10.7554/eLife.53933
Heterogeneous T cell motility behaviors emerge from a coupling between speed and turning in vivoCited by: 33
Author(s): Elizabeth R. Jerison, Stephen R. Quake
Software Mentions: 6
Published: over 4 years ago
10.1038/s41598-018-25015-5
Metabolic systems analysis of LPS induced endothelial dysfunction applied to sepsis patient stratificationCited by: 22
Author(s): Sarah McGarrity, Ósk Anuforo, Haraldur Halldórsson, Andreas Bergmann, Skarphéđinn Halldórsson, Sirus Palsson, H Henriksen, Pär I. Johansson, Óttar Rolfsson
Software Mentions: 5
Published: over 6 years ago
10.7554/eLife.63093
MITF reprograms the extracellular matrix and focal adhesion in melanomaCited by: 42
Author(s): Ramile Dilshat, Valerie Fock, Colin Kenny, Ilse Gerritsen, Romain Lasseur, Jana Trávníčková, Ossia M. Eichhoff, Philipp Cerny, Katrín Möller, Sara Sigurbjörnsdóttir, Kritika Kirty, Berglind O. Einarsdottir, Phil F. Cheng, Mitchell P. Levesque, Robert A. Cornell, E. Elizabeth Patton, Lionel Larue, Marie de Tayrac, Erna Magnúsdóttir, Margrét H. Ögmundsdóttir, Eirı́kur Steingrı́msson
Software Mentions: 5
Published: almost 4 years ago
10.7554/eLife.50601
Cell-type-specific control of basolateral amygdala neuronal circuits via entorhinal cortex-driven feedforward inhibitionCited by: 15
Author(s): Eartha Mae Guthman, Joshua D. Garcia, Ming Ma, Philip Chu, Serapio M. Baca, Katharine R. Smith, Diego Restrepo, Molly M. Huntsman
Software Mentions: 5
Published: almost 5 years ago
10.1523/ENEURO.0211-20.2020
Regulatory Elements Inserted into AAVs Confer Preferential Activity in Cortical InterneuronsCited by: 11
Author(s): Anna Noren Rubin, Ruchi Malik, Kathleen K.A. Cho, Kenneth J. Lim, Susan Lindtner, Sarah E. Robinson Schwartz, Daniel Vogt, Vikaas S. Sohal, John L.R. Rubenstein
Software Mentions: 4
Published: about 4 years ago
10.1126/sciadv.abg5982
Single-cell analyses unravel cell type–specific responses to a vitamin D analog in prostatic precancerous lesionsCited by: 9
Author(s): Mohamed A. Abu el Maaty, Élise Grelet, Céline Keime, Anna‐Isavella Rerra, Justine Gantzer, C. Emprou, Julie Terzic, Régis Lutzing, Jean‐Marc Bornert, Gilles Laverny, Daniel Metzger
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pgen.1009526
Expression of the cancer-associated DNA polymerase ε P286R in fission yeast leads to translesion synthesis polymerase dependent hypermutation and defective DNA replicationCited by: 5
Author(s): Ignacio Soriano, Enrique Vázquez, Nagore de León, Sibyl Bertrand, Ellen Heitzer, Sophia Toumazou, Zhihan Bo, Claire Palles, Chen-Chun Pai, Timothy C. Humphrey, Ian Tomlinson, Sue Cotterill, Stephen Kearsey
Software Mentions: 4
Published: over 3 years ago
10.7554/eLife.30657
Wilms Tumor 1b defines a wound-specific sheath cell subpopulation associated with notochord repairCited by: 21
Author(s): Juan Carlos Lopez-Baez, Daniel J. Simpson, Laura Lleras Forero, Zhiqiang Zeng, Hannah Brunsdon, Angela Salzano, Alessandro Brombin, Cameron Wyatt, Witold M. Rybski, Leonie F. A. Huitema, Rodney M. Dale, Koichi Kawakami, Christoph Englert, Tamir Chandra, Stefan Schulte‐Merker, Nicholas D. Hastie, E. Elizabeth Patton
Software Mentions: 4
Published: almost 7 years ago
10.7554/eLife.30352
Pedunculopontine glutamatergic neurons control spike patterning in substantia nigra dopaminergic neuronsCited by: 31
Author(s): Daniel J. Galtieri, Chad M Estep, David L. Wokosin, Stephen F. Traynelis, D. James Surmeier
Software Mentions: 4
Published: about 7 years ago
10.1038/s41598-020-76272-2
Lateral diffusion of CD14 and TLR2 in macrophage plasma membrane assessed by raster image correlation spectroscopy and single particle trackingCited by: 6
Author(s): Sara Matarazzo, Markus Rose, Suman Ranjit, Michelle A. Digman, Dawn M. E. Bowdish, Jose M. Moran‐Mirabal
Software Mentions: 4
Published: almost 4 years ago
10.7554/eLife.35322
The nucleosomal acidic patch relieves auto-inhibition by the ISWI remodeler SNF2hCited by: 51
Author(s): Nathan Gamarra, Shirley Johnson, Michael J. Trnka, Alma L. Burlingame, Geeta J. Narlikar
Software Mentions: 3
Published: over 6 years ago
10.3389/fninf.2014.00080
SIMA: Python software for analysis of dynamic fluorescence imaging dataCited by: 155
Author(s): Patrick Kaifosh, Jeffrey D. Zaremba, Nathan Danielson, Attila Losonczy
Software Mentions: 3
Published: about 10 years ago
10.1371/journal.pone.0203040
Characterization of EGF-guided MDA-MB-231 cell chemotaxis in vitro using a physiological and highly sensitive assay systemCited by: 19
Author(s): Verena Biswenger, Nina Baumann, Johannes Jürschick, Martina Häckl, Christopher Battle, Jan Schwarz, Elias Horn, Roman Zantl
Software Mentions: 3
Published: about 6 years ago
10.1038/s41598-019-48455-z
High-speed device synchronization in optical microscopy with an open-source hardware control platformCited by: 8
Author(s): Marshall J. Colville, Sangwoo Park, Warren R. Zipfel, Matthew J. Paszek
Software Mentions: 3
Published: about 5 years ago
10.7554/eLife.36898
Mitotic progression, arrest, exit or death relies on centromere structural integrity, rather than de novo transcriptionCited by: 16
Author(s): Marco Novais-Cruz, Maria Alba Abad, Wilfred F. J. van IJcken, Niels Galjart, A. Arockia Jeyaprakash, Hélder Maiato, Cristina Ferrás
Software Mentions: 3
Published: over 6 years ago
10.1242/jcs.230714
Anterior-enriched filopodia create appearance of asymmetric membrane microdomains in polarizing<i>C. elegans</i>zygotesCited by: 13
Author(s): Nisha Hirani, Rukshala Illukkumbura, Tom Bland, Grégoire Mathonnet, Delphine Suhner, Anne-Cécile Reymann, Nathan W. Goehring
Software Mentions: 3
Published: almost 6 years ago
10.1126/sciadv.abg3013
<i>C9orf72</i> -derived arginine-containing dipeptide repeats associate with axonal transport machinery and impede microtubule-based motilityCited by: 51
Author(s): Laura Fumagalli, Florence L. Young, Steven Boeynaems, Mathias De Decker, Arpan R. Mehta, Ann Swijsen, Raheem Fazal, Wenting Guo, Matthieu Moisse, Jimmy Beckers, Lieselot Dedeene, Bhuvaneish T. Selvaraj, Tijs Vandoorne, Vanesa Madan, Marka van Blitterswijk, Denitza Raitcheva, Alexander McCampbell, Koen Poesen, Aaron D. Gitler, Philipp Koch, Pieter Vanden Berghe, Dietmar Rudolf Thal, Cathérine Verfaillie, Siddharthan Chandran, Ludo Van Den Bosch, Simon L. Bullock, Philip Van Damme
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pcbi.1004995
Cellular Interrogation: Exploiting Cell-to-Cell Variability to Discriminate Regulatory Mechanisms in Oscillatory SignallingCited by: 7
Author(s): Javier Estrada, Natalie Andrew, Daniel G. Gibson, Frederick Chang, Florian Gnad, Jeremy Gunawardena
Software Mentions: 3
Published: over 8 years ago
10.1093/braincomms/fcaa146
Tumour necrosis factor induces increased production of extracellular amyloid-β- and α-synuclein-containing aggregates by human Alzheimer’s disease neuronsCited by: 14
Author(s): Daniel R. Whiten, Philip W. Brownjohn, Steven J. Moore, Suman De, Alessio Strano, Yukun Zuo, Moritz Haneklaus, David Klenerman, Frederick J. Livesey
Software Mentions: 3
Published: almost 5 years ago
10.1038/s41598-017-12747-z
Role of autophagy in cell-penetrating peptide transfection modelCited by: 23
Author(s): Moataz Dowaidar, Maxime Gestin, Carmine Pasquale Cerrato, Mohammed Hakim Jafferali, Helerin Margus, Paula Ann Kivistik, Kariem Ezzat, Einar Hallberg, Margus Pooga, Mattias Hällbrink, Ülo Langel
Software Mentions: 3
Published: about 7 years ago
10.1186/s13075-021-02588-7
Hyaluronic acid synthesis, degradation, and crosslinking in equine osteoarthritis: TNF-α-TSG-6-mediated HC-HA formationCited by: 5
Author(s): Diana C. Fasanello, Jin Su, Siyu Deng, Rose T. Yin, Marshall J. Colville, Joshua M. Berenson, Carolyn M. Kelly, Heather Freer, Alicia Rollins, Bettina Wagner, Felipe Rivas, Adam R. Hall, Elaheh Rahbar, Paul L. DeAngelis, Matthew J. Paszek, Heidi L. Reesink
Software Mentions: 3
Published: about 3 years ago
10.26508/lsa.201800242
Mechanistic aspects of maltotriose-conjugate translocation to the Gram-negative bacteria cytoplasmCited by: 11
Author(s): Estelle Dumont, Julia Vergalli, Jelena Pajović, Satya Prathyusha Bhamidimarri, Koldo Morante, Jiajun Wang, Dmitrijs Lubriks, Edgars Sūna, Robert A. Stavenger, Mathias Winterhalter, Matthieu Réfrégiers, Jean‐Marie Pagès
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0240127
Motion magnification analysis of microscopy videos of biological cellsCited by: 3
Author(s): Oren Shabi, Sari Natan, Avraham Kolel, Angshuman Mukherjee, Oren Tchaicheeyan, Haguy Wolfenson, Nahum Kiryati, Ayelet Lesman
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-017-01543-4
Integrated single- and two-photon light sheet microscopy using accelerating beamsCited by: 34
Author(s): Peeter Piksarv, Dominik Marti, Tuan Le, Angelika Unterhuber, Lindsey H. Forbes, Melissa R. Andrews, A. Stingl, Wolfgang Drexler, Peter E. Andersen, Kishan Dholakia
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0095113
Heterogeneous Intracellular Trafficking Dynamics of Brain-Derived Neurotrophic Factor Complexes in the Neuronal Soma Revealed by Single Quantum Dot TrackingCited by: 26
Author(s): Anke Vermehren-Schmaedick, Wesley D. Krueger, Thomas Jacob, Damien Ramunno-Johnson, Agnieszka Bałkowiec, Keith A. Lidke, Tania Q. Vu
Software Mentions: 2
Published: over 10 years ago
10.1186/s12917-021-02873-2
Investigation of synovial fluid lubricants and inflammatory cytokines in the horse: a comparison of recombinant equine interleukin 1 beta-induced synovitis and joint lavage modelsCited by: 6
Author(s): Amanda R. Watkins, Diana C. Fasanello, Darko Stefanovski, Sydney Schurer, Katherine Caracappa, Albert D’Agostino, Emily Costello, Heather Freer, Alicia Rollins, Claire Read, Jin Su, Marshall J. Colville, Matthew J. Paszek, Bettina Wagner, Heidi L. Reesink
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0116037
Multi-Scale Imaging and Informatics Pipeline for In Situ Pluripotent Stem Cell AnalysisCited by: 7
Author(s): Bryan R. Gorman, Junjie Lu, Anna Baccei, Nathan Lowry, Jeremy E. Purvis, Rami Mangoubi, Paul H. Lerou
Software Mentions: 2
Published: almost 10 years ago
10.1111/bph.13023
TRPV4 and K<sub>Ca</sub>ion channels functionally couple as osmosensors in the paraventricular nucleusCited by: 42
Author(s): Claire H. Feetham, Nicolas Nunn, Rebecca Lewis, Caroline Dart, Richard Barrett‐Jolley
Software Mentions: 2
Published: almost 10 years ago
10.3390/jimaging5120088
Software-Based Three-Dimensional Deconvolution Microscopy of Cytoskeletal Proteins in Cultured Fibroblast Using Open-Source Software and Open HardwareCited by: 2
Author(s): Kazuo Katoh
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pone.0163025
Forced Trefoil Factor Family Peptide 3 (TFF3) Expression Reduces Growth, Viability, and Tumorigenicity of Human Retinoblastoma Cell LinesCited by: 12
Author(s): Jan Große-Kreul, Maike Busch, Claudia Winter, Stefanie Pikos, Harald Stephan, Nicole Dünker
Software Mentions: 2
Published: about 8 years ago
10.1371/journal.pbio.3000457
Cell confinement reveals a branched-actin independent circuit for neutrophil polarityCited by: 50
Author(s): Brian R. Graziano, Jason P. Town, E Sitarska, Tamas L. Nagy, Miha Fošnarič, Samo Penič, Aleš Iglič, Veronika Kralj‐Iglič, Nir S. Gov, Alba Diz-Muñoz, Orion D. Weiner
Software Mentions: 2
Published: about 5 years ago
10.1016/j.cels.2017.10.013
Asymmetry between Activation and Deactivation during a Transcriptional PulseCited by: 12
Author(s): Lee Dunham, Hiroshi Momiji, Claire V. Harper, Polly Downton, Kirsty Hey, A. McNamara, Karen Featherstone, David G. Spiller, D.A.J. Rand, Bärbel Finkenstädt, Michael R. H. White, Julian Davis
Software Mentions: 2
Published: almost 7 years ago
10.3390/ijms21082803
Single-Molecule Super-Resolution Microscopy Reveals Heteromeric Complexes of MET and EGFR upon Ligand ActivationCited by: 23
Author(s): Marie-Lena I. E. Harwardt, Mark S. Schröder, Yunqing Li, Sebastian Malkusch, Petra Freund, Shashi Gupta, Nebojša Janjić, Sebastian Strauss, Ralf Jungmann, Marina S. Dietz, Mike Heilemann
Software Mentions: 2
Published: over 4 years ago
10.1128/JVI.00319-20
Loss of the Nuclear Protein RTF2 Enhances Influenza Virus ReplicationCited by: 3
Author(s): Bing Shao Chia, Bo Li, Ang Cui, Thomas Eisenhaure, Raktima Raychowdhury, David Lieb, Nir Hacohen
Software Mentions: 2
Published: about 4 years ago
10.7554/eLife.60126
Autoregulatory control of microtubule binding in doublecortin-like kinase 1Cited by: 14
Author(s): Regina L. Agulto, Melissa M Rogers, Tracy Tan, Amrita Ramkumar, Ashlyn M Downing, Hannah Bodin, Julia Castro, Dan W. Nowakowski, Kassandra M. Ori-McKenney
Software Mentions: 2
Published: over 3 years ago
10.1007/s00216-020-03084-8
Superresolving the kidney—a practical comparison of fluorescence nanoscopy of the glomerular filtration barrierCited by: 7
Author(s): Lucia Cs Wunderlich, Florian Ströhl, Stefan Ströhl, Oliver Vanderpoorten, Luca Mascheroni, Clemens F. Kaminski
Software Mentions: 2
Published: almost 4 years ago
10.3390/cells8121541
A Software Tool for High-Throughput Real-Time Measurement of Intensity-Based Ratio-Metric FRETCited by: 6
Author(s): Masoud Ramuz, Alveera Hasan, Lena Gruscheski, Ivan Diakonov, Nikoleta Pavlaki, Viacheslav O. Nikolaev, Siân E. Harding, Chris Dunsby, Julia Gorelik
Software Mentions: 2
Published: almost 5 years ago
10.7554/eLife.36312
RNA-directed activation of cytoplasmic dynein-1 in reconstituted transport RNPsCited by: 67
Author(s): Mark A McClintock, Carly I Dix, Christopher M. Johnson, Stephen H. McLaughlin, Rory J Maizels, Ha Thi Hoang, Simon L. Bullock
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0221245
Predicting the future direction of cell movement with convolutional neural networksCited by: 11
Author(s): S. Nishimoto, Yuta Tokuoka, Takahiro Yamada, Noriko Hiroi, Akira Funahashi
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.pone.0216251
A 61% lighter cell culture dish to reduce plastic wasteCited by: 4
Author(s): Pedro Réu, Gustav Svedberg, Lars Hässler, Bjørn Møller, Helene Andersson Svahn, Jesper Gantelius
Software Mentions: 2
Published: over 5 years ago
10.7554/eLife.68579
Live-cell single-molecule tracking highlights requirements for stable Smc5/6 chromatin association in vivoCited by: 18
Author(s): Thomas J. Etheridge, Desirée Villahermosa, Eduard Campillo-Funollet, Alex Herbert, Anja Irmisch, Adam T. Watson, Hung Quang Dang, Mark Osborne, Antony W. Oliver, Johanne M. Murray
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pcbi.1005041
Direct Correlation between Motile Behavior and Protein Abundance in Single CellsCited by: 59
Author(s): Y. Dufour, Sébastien Gillet, Nicholas Frankel, Douglas B. Weibel, Thierry Emonet
Software Mentions: 2
Published: about 8 years ago
10.1038/s41419-020-03091-8
BioID-based proteomic analysis of the Bid interactome identifies novel proteins involved in cell-cycle-dependent apoptotic primingCited by: 4
Author(s): Robert Pedley, Louise King, Venkatesh Mallikarjun, Pengbo Wang, Joe Swift, Keith Brennan, Andrew Gilmore
Software Mentions: 2
Published: about 4 years ago
10.1371/journal.pbio.3000100
A transient helix in the disordered region of dynein light intermediate chain links the motor to structurally diverse adaptors for cargo transportCited by: 36
Author(s): Ricardo Celestino, Morkos A. Henen, José B. Gama, Cátia A. Carvalho, Maxwell C. McCabe, Daniel José Barbosa, Alexandra Born, Parker J. Nichols, Alexandra T. P. Carvalho, Reto Gassmann, Beat Vögeli
Software Mentions: 2
Published: almost 6 years ago
10.1194/jlr.M050229
High confidence proteomic analysis of yeast LDs identifies additional droplet proteins and reveals connections to dolichol synthesis and sterol acetylationCited by: 91
Author(s): Erin Currie, Xiuling Guo, Romain Christiano, Chandramohan Chitraju, Nora Kory, Kathryn Harrison, Joel T. Haas, Tobias C. Walther, Robert V. Farese
Software Mentions: 2
Published: over 10 years ago
10.1128/mBio.00210-19
Bacterial Swarming Reduces Proteus mirabilis and Vibrio parahaemolyticus Cell Stiffness and Increases β-Lactam SusceptibilityCited by: 13
Author(s): George K. Auer, Piercen M. Oliver, Manohary Rajendram, Ti-Yu Lin, Qing Yao, Grant J. Jensen, Douglas B. Weibel
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-48113-4
Silver ions cause oscillation of bacterial length of Escherichia coliCited by: 8
Author(s): Venkata Rao Krishnamurthi, Jingyi Chen, Yong Wang
Software Mentions: 2
Published: about 5 years ago
10.1038/ismej.2017.1
Divergent extremes but convergent recovery of bacterial and archaeal soil communities to an ongoing subterranean coal mine fireCited by: 90
Author(s): Sang Hoon Lee, Jackson W Sorensen, Keara L. Grady, Tammy C Tobin, Ashley Shade
Software Mentions: 2
Published: over 7 years ago
10.7554/eLife.51421
Epigenetic memory independent of symmetric histone inheritanceCited by: 26
Author(s): Daniel S Saxton, Jasper Rine
Software Mentions: 2
Published: about 5 years ago
10.1074/mcp.M115.054064
Identification of Evening Complex Associated Proteins in Arabidopsis by Affinity Purification and Mass SpectrometryCited by: 148
Author(s): He Huang, Sophie Alvarez, Rebecca K. Bindbeutel, Zhouxin Shen, Michael J. Naldrett, Bradley S. Evans, Steven P. Briggs, Leslie M. Hicks, Steve A. Kay, Dmitri A. Nusinow
Software Mentions: 2
Published: almost 9 years ago
10.1016/j.xpro.2020.100084
A Protocol to Engineer Bacteriophages for Live-Cell Imaging of Bacterial Prophage Induction Inside Mammalian CellsCited by: 2
Author(s): Katie Bodner, Arin L. Melkonian, Markus W. Covert
Software Mentions: 2
Published: about 4 years ago
10.1371/journal.ppat.1006532
Salmonella enterica serovar-specific transcriptional reprogramming of infected cellsCited by: 24
Author(s): Sebastian Hannemann, Jorge E. Galán
Software Mentions: 2
Published: over 7 years ago
10.3389/fncel.2018.00410
Evidence of Müller Glia Conversion Into Retina Ganglion Cells Using Neurogenin2Cited by: 26
Author(s): Roberta Pereira de Melo Guimarães, Bruna Soares Landeira, Diego Marques Coelho, Daiane Cristina Ferreira Golbert, Mariana S. Silveira, Rafael Linden, Ricardo Augusto de Melo Reis, Marcos Romualdo Costa
Software Mentions: 2
Published: almost 6 years ago
10.3389/fnsyn.2021.671288
Visualizing Synaptic Multi-Protein Patterns of Neuronal Tissue With DNA-Assisted Single-Molecule Localization MicroscopyCited by: 5
Author(s): K. Narayanasamy, Aleksandar Stojic, Yunqing Li, Steffen Sass, Marina Hesse, Nina S. Deußner-Helfmann, Marina S. Dietz, Thomas Kuner, Maja Klevanski, Mike Heilemann
Software Mentions: 2
Published: over 3 years ago
10.1063/1.5144487
A versatile, multi-laser twin-microscope system for light-sheet imagingCited by: 9
Author(s): Kevin Keomanee-Dizon, Scott E. Fraser, Thai V. Truong
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-018-28692-4
Structural analyses of FERM domain-mediated membrane localization of FARP1Cited by: 11
Author(s): Yi Chun Kuo, Xiaojing He, Andrew J. Coleman, Yu‐Ju Chen, Pranathi Dasari, Thomas Biederer, Xuewu Zhang
Software Mentions: 2
Published: over 6 years ago
10.7554/eLife.26990
Actin-based protrusions of migrating neutrophils are intrinsically lamellar and facilitate direction changesCited by: 98
Author(s): Lillian K. Fritz‐Laylin, Megan Riel-Mehan, Bi-Chang Chen, Samuel J. Lord, Thomas D. Goddard, Thomas E. Ferrin, Susan Nicholson-Dykstra, Henry N. Higgs, Graham Johnson, Eric Betzig, R. Dyche Mullins
Software Mentions: 2
Published: about 7 years ago
10.1186/1475-2875-12-41
Cytoplasmic free Ca2+ is essential for multiple steps in malaria parasite egress from infected erythrocytesCited by: 48
Author(s): Svetlana Glushakova, Vladimir A. Lizunov, Paul S. Blank, Kamran Melikov, Glen Humphrey, Joshua Zimmerberg
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0063072
The Effect of an Intervening Promoter Nucleosome on Gene ExpressionCited by: 8
Author(s): Rasesh Y. Parikh, Harold D. Kim
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0180353
Characterization of kinesin switch I mutations that cause hereditary spastic paraplegiaCited by: 21
Author(s): Scott Jennings, Madeline Chenevert, Liqiong Liu, Madhusoodanan Mottamal, Edward Wojcik, Thomas M. Huckaba
Software Mentions: 1
Published: over 7 years ago
10.1016/j.bbrc.2020.06.118
Probing the unfolded protein response in long-lived naked mole-ratsCited by: 3
Author(s): Zhen Du, Sampurna Chakrabarti, Yavuz Kulaberoglu, Ewan St. John Smith, Christopher M. Dobson, Laura S. Itzhaki, Janet R. Kumita
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0038624
Antibiotic Transport in Resistant Bacteria: Synchrotron UV Fluorescence Microscopy to Determine Antibiotic Accumulation with Single Cell ResolutionCited by: 61
Author(s): Slávka Kaščáková, Laure Maigre, Jacqueline Chevalier, Matthieu Réfrégiers, Jean‐Marie Pagès
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0080136
Drosophila Growth Cones Advance by Forward Translocation of the Neuronal Cytoskeletal Meshwork In VivoCited by: 27
Author(s): Douglas H. Roossien, Phillip Lamoureux, David Van Vactor, Kyle E. Miller
Software Mentions: 1
Published: almost 11 years ago
10.26508/lsa.202000981
nNOS regulates ciliated cell polarity, ciliary beat frequency, and directional flow in mouse tracheaCited by: 5
Author(s): Anatoly Mikhailik, Tatyana V. Michurina, Krikor Dikranian, Stephen Hearn, Vladimir I Maxakov, Saul S. Siller, Ken‐Ichi Takemaru, Grigori Enikolopov, Natalia Peunova
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0204957
Regulation of epithelial migration by epithelial cell adhesion molecule requires its Claudin-7 interaction domainCited by: 14
Author(s): Angela I.M. Barth, Honesty Kim, Ingmar H. Riedel-Kruse
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pgen.1005484
RAB-10-Dependent Membrane Transport Is Required for Dendrite ArborizationCited by: 71
Author(s): Wei Zou, Smita Yadav, Laura DeVault, Yuh Nung Jan, David R. Sherwood
Software Mentions: 1
Published: about 9 years ago
10.26508/lsa.201800135
Centrosome guides spatial activation of Rac to control cell polarization and directed cell migrationCited by: 15
Author(s): Hung Wei Cheng, Cheng Te Hsiao, Yin-Quan Chen, Chi Ming Huang, Seng I. Chan, Arthur Chiou, Jean Cheng Kuo
Software Mentions: 1
Published: almost 6 years ago
10.3762/bjnano.8.125
Evaluation of quantum dot conjugated antibodies for immunofluorescent labelling of cellular targetsCited by: 24
Author(s): Jennifer E. Francis, David Mason, Raphaël Lévy
Software Mentions: 1
Published: over 7 years ago
10.1186/s12859-020-03727-8
EMU: reconfigurable graphical user interfaces for Micro-ManagerCited by: 15
Author(s): Joran Deschamps, Jonas Ries
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pgen.1004644
The Vesicle Protein SAM-4 Regulates the Processivity of Synaptic Vesicle TransportCited by: 44
Author(s): Qun Zheng, Shikha Ahlawat, Anneliese M. Schaefer, Tim Mahoney, Sandhya P. Koushika, Michael L. Nonet
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pgen.1009056
Cells with loss-of-heterozygosity after exposure to ionizing radiation in Drosophila are culled by p53-dependent and p53-independent mechanismsCited by: 3
Author(s): Jeremy Brown, Inle Bush, Justine Bozon, Tin Tin Su
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pgen.1006582
The Replisomes Remain Spatially Proximal throughout the Cell Cycle in BacteriaCited by: 42
Author(s): Sarah Mangiameli, Brian T. Veit, Houra Merrikh, Paul A. Wiggins
Software Mentions: 1
Published: almost 8 years ago
10.1093/brain/awz297
Glycine receptor autoantibodies disrupt inhibitory neurotransmissionCited by: 41
Author(s): Sarah Crisp, Curt B. Dixon, Leslie Jacobson, E Chabrol, Sarosh R. Irani, Maria Isabel Leite, Guy Leschziner, Seán J. Slaght, Angela Vincent, Dimitri M. Kullmann
Software Mentions: 1
Published: about 5 years ago
10.1038/s42003-020-0787-6
High-contrast, synchronous volumetric imaging with selective volume illumination microscopyCited by: 36
Author(s): Thai V. Truong, Daniel B. Holland, Sara Madaan, Andrey Andreev, Kevin Keomanee-Dizon, Josh V Troll, Daniel E. S. Koo, Margaret J. McFall‐Ngai, Scott E. Fraser
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pcbi.1005007
The Integrated Role of Wnt/β-Catenin, N-Glycosylation, and E-Cadherin-Mediated Adhesion in Network DynamicsCited by: 18
Author(s): Diego A. Vargas, Mingzhe Sun, Khikmet Sadykov, Maria A. Kukuruzinska, Muhammad H. Zaman
Software Mentions: 1
Published: over 8 years ago
10.1002/cbic.201100282
Subcellular Protein Localization by Using a Genetically Encoded Fluorescent Amino AcidCited by: 42
Author(s): Godefroid Charbon, Eric M. Brustad, Kevin A. Scott, Jiangyun Wang, Anders Løbner-Olesen, Peter G. Schultz, Christine Jacobs‐Wagner, Eli Chapman
Software Mentions: 1
Published: over 13 years ago
10.3390/cells9122563
Filamin A Orchestrates Cytoskeletal Structure, Cell Migration and Stem Cell Characteristics in Human Seminoma TCam-2 CellsCited by: 6
Author(s): Harald Welter, Carola Herrmann, Thomas Fröhlich, Florian Flenkenthaler, Katja Eubler, Hubert Schorle, Daniel Nettersheim, Artur Mayerhofer, Annette Müller‐Taubenberger
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pbio.1002029
Electrochemical Regulation of Budding Yeast PolarityCited by: 23
Author(s): Armin Haupt, Alexis N. Campetelli, Daria Bonazzi, Matthieu Piel, Fred Chang, Nicolas Minc
Software Mentions: 1
Published: almost 10 years ago
10.1038/s41416-019-0498-2
Anti-angiogenic effects of crenolanib are mediated by mitotic modulation independently of PDGFR expressionCited by: 11
Author(s): Robert H. Berndsen, Cédric Castrogiovanni, Andrea Weiss, Magdalena Rausch, Marchien G. Dallinga, Marijana Miljkovic‐Licina, Ingeborg Klaassen, Patrick Meraldi, Judy R. van Beijnum, Patrycja Nowak-Śliwińska
Software Mentions: 1
Published: over 5 years ago
10.1186/s13104-021-05730-5
CPB-3 and CGH-1 localize to motile particles within dendrites in C. elegans PVD sensory neuronsCited by: 1
Author(s): Kathrin Spendier, Eugenia C. Olesnicky, Daniel Forand, Margaret Wolf, Darrell J. Killian
Software Mentions: 1
Published: about 3 years ago
10.1063/1.5113719
Automated sensing and splitting of stem cell colonies on microraft arraysCited by: 9
Author(s): Matthew DiSalvo, Nicole M. Smiddy, Nancy L. Allbritton
Software Mentions: 1
Published: about 5 years ago
10.1038/s41420-021-00412-4
Dexamethasone accelerates muscle regeneration by modulating kinesin-1-mediated focal adhesion signalsCited by: 9
Author(s): Jong Wei Lin, Yongheng Huang, Yin-Quan Chen, Ting Yun Chuang, Tien Yun Lan, Yen Wenn Liu, Hung Wei Pan, Li Ru You, Yang Kao Wang, Keng Hui Lin, Arthur Chiou, Jean Cheng Kuo
Software Mentions: 1
Published: over 3 years ago
10.1186/s13068-017-0874-1
Heterologous co-expression of a yeast diacylglycerol acyltransferase (ScDGA1) and a plant oleosin (AtOLEO3) as an efficient tool for enhancing triacylglycerol accumulation in the marine diatom Phaeodactylum tricornutumCited by: 44
Author(s): Nodumo Nokulunga Zulu, Jennifer Popko, Krzysztof Zienkiewicz, Pablo Tarazona, Cornelia Herrfurth, Ivo Feußner
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pbio.3001334
The transcription factor LAG-1/CSL plays a Notch-independent role in controlling terminal differentiation, fate maintenance, and plasticity of serotonergic chemosensory neuronsCited by: 4
Author(s): Miren Maicas, Ángela Jimeno-Martín, Andrea Millán-Trejo, Mark J. Alkema, Nuria Flames
Software Mentions: 1
Published: over 3 years ago
10.1186/s13578-016-0108-4
Disruption of the Golgi protein Otg1 gene causes defective hormone secretion and aberrant glucose homeostasis in miceCited by: 5
Author(s): Guangxue Wang, Rongbo Li, Ying Yang, Liang Cai, Sheng Ding, Tian Xu, Min Han, Xiaohui Wu
Software Mentions: 1
Published: over 8 years ago
10.1016/j.cell.2013.11.025
A Bidirectional Circuit Switch Reroutes Pheromone Signals in Male and Female BrainsCited by: 180
Author(s): Johannes Kohl, Aaron D. Ostrovsky, Shahar Frechter, Gregory S.X.E. Jefferis
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pbio.2001264
A coordinated DNA damage response promotes adult quiescent neural stem cell activationCited by: 32
Author(s): Lara Barazzuol, Limei Ju, Penny A. Jeggo
Software Mentions: 1
Published: over 7 years ago
10.3390/biomimetics4020033
Cell Culture Platforms with Controllable Stiffness for Chick Embryonic CardiomyocytesCited by: 4
Author(s): María Luisa Durán-Pastén, Daniela Cortés, Alan E. Valencia-Amaya, Santiago King, Gertrudis Hortensia González-Gómez, Mathieu Hautefeuille
Software Mentions: 1
Published: over 5 years ago
10.1186/1471-2121-15-35
High resolution surface plasmon resonance imaging for single cellsCited by: 72
Author(s): Alexander W. Peterson, Michael Halter, Alessandro Tona, Anne L. Plant
Software Mentions: 1
Published: almost 10 years ago
10.1038/cddis.2015.51
Readthrough acetylcholinesterase (AChE-R) and regulated necrosis: pharmacological targets for the regulation of ovarian functions?Cited by: 42
Author(s): Jan Blohberger, Lars Kunz, D. Einwang, U. Berg, Dieter Berg, Sergio R. Ojeda, Gregory A. Dissen, Thomas Fröhlich, Georg J. Arnold, Hermona Soreq, Hernán Lara, Artur Mayerhofer
Software Mentions: 1
Published: over 9 years ago
10.1016/j.cell.2016.04.034
Dynamics of Translation of Single mRNA Molecules In VivoCited by: 370
Author(s): Xiao‐Wei Yan, Tim A. Hoek, Ronald D. Vale, Marvin E. Tanenbaum
Software Mentions: 1
Published: over 8 years ago
10.1016/j.celrep.2019.04.033
Comprehensive Genetic Characterization of Mitochondrial Ca2+ Uniporter Components Reveals Their Different Physiological Requirements In VivoCited by: 43
Author(s): Roberta Tufi, T. P. Gleeson, Sophia von Stockum, Victoria L. Hewitt, Juliette J. Lee, Ana Terriente‐Felix, Álvaro Sánchez-Martínez, Elena Ziviani, Alexander J. Whitworth
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0133786
Small Molecule Inhibitors of Plasminogen Activator Inhibitor-1 Elicit Anti-Tumorigenic and Anti-Angiogenic ActivityCited by: 37
Author(s): Veronica R. Placencio, Atsuhiko Ichimura, Toshio Miyata, Yves A. DeClerck
Software Mentions: 1
Published: over 9 years ago
10.1186/s13007-019-0459-z
Design of a comprehensive microfluidic and microscopic toolbox for the ultra-wide spatio-temporal study of plant protoplasts development and physiologyCited by: 14
Author(s): Kaori Sakai, Florence Charlot, Thomas Le Saux, Sandrine Bonhomme, Fabien Nogué, Jean-Christophe Palauqui, Jacques Fattaccioli
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0171257
Engineering of mCherry variants with long Stokes shift, red-shifted fluorescence, and low cytotoxicityCited by: 54
Author(s): Yi Shen, Yingche Chen, Jiahui Wu, Nathan C. Shaner, Robert E. Campbell
Software Mentions: 1
Published: over 7 years ago
10.1039/c9sc05568a
Targeted cell imaging properties of a deep red luminescent iridium(<scp>iii</scp>) complex conjugated with a c-Myc signal peptideCited by: 32
Author(s): Adam H. Day, Martin H. Ubler, Hannah Best, Emyr Lloyd-Evans, Robert J. Mart, Ian A. Fallis, Rudolf Konrad Allemann, Eman A. H. Al-Wattar, Nathaniel I. Keymer, Niklaas J. Buurma, Simon J. A. Pope
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0048024
Alteration of Cellular Behavior and Response to PI3K Pathway Inhibition by Culture in 3D Collagen GelsCited by: 72
Author(s): Brian Fallica, Joseph S. Maffei, Shaun Villa, Guy Makin, Muhammad H. Zaman
Software Mentions: 1
Published: about 12 years ago
10.1007/s00412-018-0674-9
Defects in meiotic recombination delay progression through pachytene in Tex19.1−/− mouse spermatocytesCited by: 8
Author(s): James H Crichton, David Read, Ian R. Adams
Software Mentions: 1
Published: over 6 years ago
10.1186/1746-4811-7-27
Variable-angle total internal reflection fluorescence microscopy of intact cells of Arabidopsis thalianaCited by: 50
Author(s): Yinglang Wan, William M. Ash, Lusheng Fan, Huai-Qin Hao, Myung K. Kim, Jinxing Lin
Software Mentions: 1
Published: about 13 years ago
10.1063/1.5038965
Serial integration of Dean-structured sample cores with linear inertial focussing for enhanced particle and cell sortingCited by: 6
Author(s): Paul M. Holloway, Jonathan Butement, Manjunath Hegde, Jonathan West
Software Mentions: 1
Published: over 6 years ago