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Projects: pypi: MetaPhlAn

https://packages.ecosyste.ms/registries/pypi.org/packages/MetaPhlAn

MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
24 versions
Latest release: over 2 years ago
485 downloads last month

Enhanced Analysis
Repository Activity:
Repository Owner: bioBakery (organization)
Software, documentation, and tutorials for microbial community profiling. Institutional
README Analysis: DOI Found
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +15 Institutional repository owner
    Repository owned by research institution
  • +10 Educational website
    Repository owner has educational domain website
  • +14 Science terms in README
    7 scientific terms found in README
  • +10 DOI references
    1 DOI references found in README
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem
  • -15 No science keywords
    No scientific terms found in keywords/classifiers
Very Likely Science (100)

Papers Mentioning MetaPhlAn 306

10.3389/fmicb.2016.00937
Whole-Metagenome-Sequencing-Based Community Profiles of Vitis vinifera L. cv. Corvina Berries Withered in Two Post-harvest Conditions
Cited by: 42
Author(s): Elisa Salvetti, Stefano Campanaro, Ilenia Campedelli, Fabio Fracchetti, Alex Gobbi, Giovanni Battista Tornielli, Sandra Torriani, Giovanna E. Felis
Software Mentions: 1
Published: over 9 years ago
10.1186/s12866-020-01911-7
Gut microbiome of endangered Tor putitora (Ham.) as a reservoir of antibiotic resistance genes and pathogens associated with fish health
Cited by: 7
Author(s): Himani Khurana, D Singh, Anoop Singh, Yogendra Singh, Rup Lal, Ram Krishan Negi
Software Mentions: 1
Published: about 5 years ago
10.1186/s12879-019-4462-9
Direct-from-blood RNA sequencing identifies the cause of post-bronchoscopy fever
Cited by: 5
Author(s): Emily R Ko, Casandra Philipson, Thomas W. Burke, Regina Z. Cer, Kimberly A. Bishop‐Lilly, Logan J. Voegtly, Ephraim L. Tsalik, Christopher W. Woods, Danielle V. Clark, Kevin L. Schully
Software Mentions: 1
Published: about 6 years ago
10.3389/fped.2020.549844
Strain Tracking to Identify Individualized Patterns of Microbial Strain Stability in the Developing Infant Gut Ecosystem
Cited by: 9
Author(s): Hyunmin Koo, David K. Crossman, Casey D. Morrow
Software Mentions: 1
Published: about 5 years ago
10.3389/fphar.2020.00538
Traditional Chinese Medicine and Gut Microbiome: Their Respective and Concert Effects on Healthcare
Cited by: 29
Author(s): Runzhi Zhang, Xi Gao, Hong Bai, Kang Ning
Software Mentions: 1
Published: over 5 years ago