Projects: pypi: MetaCHIP
https://packages.ecosyste.ms/registries/pypi.org/packages/MetaCHIP
HGT detection pipeline
60 versions
Latest release: about 3 years ago
84 downloads last month
Enhanced Analysis
Educational Contributors:
songweizhi@pro-song.ad.unsw.edu.au
Repository Activity:
Repository Owner:
Weizhi Song (user)
README Analysis:
DOI Found
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+20
Educational commit emails
1 contributors with educational email addresses -
+8
Science terms in README
4 scientific terms found in README -
+10
DOI references
1 DOI references found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem -
-10
No science terms in description
No scientific terms found in description
Very Likely Science (100)
Papers Mentioning MetaCHIP 8
10.3389/fmicb.2021.684756
Pan-Genome-Wide Analysis of Pantoea ananatis Identified Genes Linked to Pathogenicity in OnionCited by: 8
Author(s): Gaurav Agarwal, Divya Choudhary, Shaun Stice, Brendon K. Myers, R. D. Gitaitis, Stephanus N. Venter, Brian H. Kvitko, Bhabesh Dutta
Software Mentions: 3
Published: almost 5 years ago
10.1038/s41396-020-00876-9
A genomic view of the microbiome of coral reef demospongesCited by: 56
Author(s): Steven J. Robbins, Weizhi Song, J. Pamela Engelberts, Bettina Glasl, Beate M. Slaby, Joel A. Boyd, Emma Marangon, Emmanuelle S. Botté, Patrick W. Laffy, Torsten Thomas, Nicole S. Webster
Software Mentions: 3
Published: over 5 years ago
10.1186/s40168-019-0649-y
MetaCHIP: community-level horizontal gene transfer identification through the combination of best-match and phylogenetic approachesCited by: 56
Author(s): Weizhi Song, Bernd Wemheuer, Shan Zhang, Kerrin Steensen, Torsten Thomas
Software Mentions: 3
Published: over 7 years ago
10.1093/gbe/evz184
Current and Promising Approaches to Identify Horizontal Gene Transfer Events in MetagenomesCited by: 48
Author(s): Gavin M. Douglas, Morgan G. I. Langille
Software Mentions: 2
Published: almost 7 years ago
10.1093/femsec/fiaa031
Biofilms: hot spots of horizontal gene transfer (HGT) in aquatic environments, with a focus on a new HGT mechanismCited by: 178
Author(s): Kimihiro Abe, Nobuhiko Nomura, Satoru Suzuki
Software Mentions: 1
Published: over 6 years ago
10.1186/s13099-020-00370-9
Understanding Horizontal Gene Transfer network in human gut microbiotaCited by: 10
Author(s): Chen Li, Jiaxing Chen, Shuai Cheng Li
Software Mentions: 1
Published: almost 6 years ago
10.3390/microorganisms9081761
Pan-Genome of Novel Pantoea stewartii subsp. indologenes Reveals Genes Involved in Onion Pathogenicity and Evidence of Lateral Gene TransferCited by: 5
Author(s): Gaurav Agarwal, R. D. Gitaitis, Bhabesh Dutta
Software Mentions: 1
Published: almost 5 years ago
10.3390/ijms21093393
Pan-Genome Analyses of Geobacillus spp. Reveal Genetic Characteristics and Composting PotentialCited by: 5
Author(s): Mengmeng Wang, Han Zhu, Zhijian Kong, Tuo Li, Lei Ma, Dongyang Liu, Qirong Shen
Software Mentions: 1
Published: about 6 years ago