Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: MetaCHIP

https://packages.ecosyste.ms/registries/pypi.org/packages/MetaCHIP

HGT detection pipeline
60 versions
Latest release: over 1 year ago
84 downloads last month

Papers Mentioning MetaCHIP 8

Pan-Genome-Wide Analysis of Pantoea ananatis Identified Genes Linked to Pathogenicity in Onion
Cited by: 8
Author(s): Gaurav Agarwal, Divya Choudhary, Shaun Stice, Brendon K. Myers, R. D. Gitaitis, Stephanus N. Venter, Brian H. Kvitko, Bhabesh Dutta
Software Mentions: 3
Published: over 3 years ago

10.1038/s41396-020-00876-9

A genomic view of the microbiome of coral reef demosponges
Cited by: 56
Author(s): Steven J. Robbins, Weizhi Song, J. Pamela Engelberts, Bettina Glasl, Beate M. Slaby, Joel A. Boyd, Emma Marangon, Emmanuelle S. Botté, Patrick W. Laffy, Torsten Thomas, Nicole S. Webster
Software Mentions: 3
Published: almost 4 years ago

10.1186/s40168-019-0649-y

MetaCHIP: community-level horizontal gene transfer identification through the combination of best-match and phylogenetic approaches
Cited by: 56
Author(s): Weizhi Song, Bernd Wemheuer, Shan Zhang, Kerrin Steensen, Torsten Thomas
Software Mentions: 3
Published: over 5 years ago

10.1093/gbe/evz184

Current and Promising Approaches to Identify Horizontal Gene Transfer Events in Metagenomes
Cited by: 48
Author(s): Gavin M. Douglas, Morgan G. I. Langille
Software Mentions: 2
Published: about 5 years ago

10.1093/femsec/fiaa031

Biofilms: hot spots of horizontal gene transfer (HGT) in aquatic environments, with a focus on a new HGT mechanism
Cited by: 178
Author(s): Kimihiro Abe, Nobuhiko Nomura, Satoru Suzuki
Software Mentions: 1
Published: over 4 years ago

10.1186/s13099-020-00370-9

Understanding Horizontal Gene Transfer network in human gut microbiota
Cited by: 10
Author(s): Chen Li, Jiaxing Chen, Shuai Cheng Li
Software Mentions: 1
Published: over 4 years ago

10.3390/microorganisms9081761

Pan-Genome of Novel Pantoea stewartii subsp. indologenes Reveals Genes Involved in Onion Pathogenicity and Evidence of Lateral Gene Transfer
Cited by: 5
Author(s): Gaurav Agarwal, R. D. Gitaitis, Bhabesh Dutta
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms21093393

Pan-Genome Analyses of Geobacillus spp. Reveal Genetic Characteristics and Composting Potential
Cited by: 5
Author(s): Mengmeng Wang, Han Zhu, Zhijian Kong, Tuo Li, Lei Ma, Dongyang Liu, Qirong Shen
Software Mentions: 1
Published: over 4 years ago