pypi: MACS | Projects | Ecosyste.ms: Papers

10.7150/thno.34874

Cooperativity of co-factor NR2F2 with Pioneer Factors GATA3, FOXA1 in promoting ERα function
Cited by: 22
Author(s): Guojuan Jiang, Xinrui Wang, Dandan Sheng, Lei Zhou, Yang Liu, Congling Xu, Suling Liu
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.ajhg.2015.05.016

Disentangling the Effects of Colocalizing Genomic Annotations to Functionally Prioritize Non-coding Variants within Complex-Trait Loci
Cited by: 122
Author(s): Gosia Trynka, Harm Jan Westra, Kamil Slowikowski, Xinli Hu, Xu Han, Barbara Elaine Stranger, Robert J. Klein, Buhm Han, Soumya Raychaudhuri
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.8870

ZNF224, Krüppel like zinc finger protein, induces cell growth and apoptosis-resistance by down-regulation of p21 and p53 via miR-663a
Cited by: 31
Author(s): Jin Gu Cho, Seho Park, Chae Hyun Lim, Hong Sook Kim, Seung Yong Song, Tae-Young Roh, Jong Hwan Sung, Wonhee Suh, Seokjin Ham, Key Hwan Lim, Sang Gyu Park
Software Mentions: 1
Published: over 8 years ago

10.7150/thno.44459

Protein acetylation derepresses Serotonin Synthesis to potentiate Pancreatic Beta-Cell Function through HDAC1-PKA-Tph1 signaling
Cited by: 6
Author(s): Yuqing Zhang, Shushu Wang, Linlin Zhang, Feiye Zhou, Ke-Cheng Zhu, Qin Zhu, Qianqian Liu, Yun Liu, Lei Jiang, Guang Ning, Yufang Bi, Libin Zhou, Xiao Wang
Software Mentions: 1
Published: almost 5 years ago

10.7150/thno.44688

Loss of SIRT4 promotes the self-renewal of Breast Cancer Stem Cells
Cited by: 25
Author(s): Du Li, Xiaoyan Liu, Yidan Ren, Juan Li, Peilong Li, Qinlian Jiao, Peng Meng, Fang Wang, Yuli Wang, Yunshan Wang, Chuanxin Wang
Software Mentions: 1
Published: almost 5 years ago

10.7150/thno.53347

KDM6B-mediated histone demethylation of LDHA promotes lung metastasis of osteosarcoma
Cited by: 19
Author(s): Yuhang Jiang, Fengfeng Li, Bowen Gao, Mengjun Ma, Chen Meng, Yanfeng Wu, Weidong Zhang, Yangbai Sun, Sanhong Liu, Huiyong Shen
Software Mentions: 1
Published: almost 4 years ago

10.1080/21541264.2015.1095269

CTCF regulates NELF, DSIF and P-TEFb recruitment during transcription
Cited by: 18
Author(s): Clélia Laitem, Justyna Zaborowska, Michael Tellier, Yuki Yamaguchi, Qi Cao, Sylvain Egloff, Hiroshi Handa, Shona Murphy
Software Mentions: 1
Published: about 9 years ago

10.1186/s40035-018-0131-y

Neurodegeneration-associated FUS is a novel regulator of circadian gene expression
Cited by: 11
Author(s): Xin Jiang, Tao Zhang, Haifang Wang, Tao Wang, Meiling Qin, Puhua Bao, Ruiqi Wang, Yuwei Liu, Hung-Chun Chang, Jun Yan, Jin Xu
Software Mentions: 1
Published: about 6 years ago

10.1038/tp.2017.52

An interaction network of mental disorder proteins in neural stem cells
Cited by: 20
Author(s): Maaike J. Moen, Hieab H.H. Adams, J Brandsma, Dick H. W. Dekkers, Umut Akinci, S Karkampouna, Martí Quevedo, Christel Kockx, Zeliha Özgür, Wilfred F. J. van IJcken, Jeroen Demmers, Raymond A. Poot
Software Mentions: 1
Published: over 7 years ago

10.1038/s41398-017-0053-y

Enrichment of schizophrenia heritability in both neuronal and glia cell regulatory elements
Cited by: 16
Author(s): Katherine E. Tansey, Matthew Hill
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41398-019-0596-1

Chromatin profiling of cortical neurons identifies individual epigenetic signatures in schizophrenia
Cited by: 17
Author(s): Fedor Gusev, Denis A. Reshetov, Amanda Mitchell, Tatiana Andreeva, Aslihan Dincer, Anastasia P. Grigorenko, Gennady Fedonin, Tobias B. Halene, Maria Aliseychik, Елена Филиппова, Zhiping Weng, Schahram Akbarian, Evgeny I. Rogaev
Software Mentions: 1
Published: about 5 years ago

10.1038/s41398-021-01378-8

UTMOST, a single and cross-tissue TWAS (Transcriptome Wide Association Study), reveals new ASD (Autism Spectrum Disorder) associated genes
Cited by: 15
Author(s): Cristina Rodríguez-Fontenla, Ángel Carracedo
Software Mentions: 1
Published: over 3 years ago

10.18632/oncotarget.8983

Neoadjuvant tamoxifen synchronizes ERα binding and gene expression profiles related to outcome and proliferation
Cited by: 12
Author(s): Tesa Severson, Ekaterina Nevedomskaya, Justine K. Peeters, Thomas Kuilman, Oscar Krijgsman, Annelot van Rossum, Marjolein Droog, Yongsoo Kim, Rutger H.T. Koornstra, Inès J. Beumer, Annuska M. Glas, Daniel S. Peeper, Jelle Wesseling, Iris Simón, Lodewyk Wessels, Sabine C. Linn, Wilbert Zwart
Software Mentions: 1
Published: over 8 years ago

10.1128/mBio.01274-18

The <i>Pseudomonas aeruginosa</i> Orphan Quorum Sensing Signal Receptor QscR Regulates Global Quorum Sensing Gene Expression by Activating a Single Linked Operon
Cited by: 43
Author(s): Fangrui Ding, Ken-Ichi Oinuma, Nicole E. Smalley, Amy L. Schaefer, Omar Hamwy, E. Peter Greenberg, Ajai A. Dandekar
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.02838-18

<i>Pseudomonas savastanoi</i> Two-Component System RhpRS Switches between Virulence and Metabolism by Tuning Phosphorylation State and Sensing Nutritional Conditions
Cited by: 24
Author(s): Yingpeng Xie, Xiaolong Shao, Yingchao Zhang, Jingui Liu, Tingting Wang, Weitong Zhang, Chenlei Hua, Xin Deng
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.9312

WDR5 high expression and its effect on tumorigenesis in leukemia
Cited by: 53
Author(s): Zheng Ge, E Song, Yuka Imamura Kawasawa, Jianyong Li, Sinisa Dovat, Chunhua Song
Software Mentions: 1
Published: over 8 years ago

10.1128/mSystems.00499-21

A Novel Nitrogen and Carbon Metabolism Regulatory Cascade Is Implicated in Entomopathogenicity of the Fungus Metarhizium robertsii
Cited by: 4
Author(s): Yamin Meng, Zhang Xing, Dan Tang, Xiaoxuan Chen, Dan Zhang, Jun Chen, Weiguo Fang
Software Mentions: 1
Published: over 3 years ago

10.1186/s13046-019-1101-7

TFE3 fusions escape from controlling of mTOR signaling pathway and accumulate in the nucleus promoting genes expression in Xp11.2 translocation renal cell carcinomas
Cited by: 30
Author(s): Xiaoqin Yin, Bo Wang, Weidong Gan, Wanchuan Zhuang, Xiang Zou, Xiaodong Han, Dongmei Li
Software Mentions: 1
Published: over 5 years ago

10.1186/s13046-019-1217-9

Aberrant activation of CYR61 enhancers in colorectal cancer development
Cited by: 26
Author(s): Lingzhu Xie, Xuhong Song, Hao Lin, Zikai Chen, Qidong Li, Tangfei Guo, Tian Xu, Ting Su, Man Xu, Xiaolan Chang, Long-Kun Wang, Bin Liang, Dongyang Huang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-014-1202-9

Emergence of differentially regulated pathways associated with the development of regional specificity in chicken skin
Cited by: 12
Author(s): Kai‐Hsin Chang, Nancy Huang, I-Hsuan Liu, Yihui Wang, Ping Wu, Yung‐Che Tseng, Michael W. Hughes, Ting Jiang, Mong-Hsun Tsai, Chien‐Yu Chen, Yen-Jen Oyang, Eric S. Lin, Cheng‐Ming Chuong, Shau-Ping Lin
Software Mentions: 1
Published: almost 10 years ago

10.1186/1748-7188-7-2

A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements
Cited by: 4
Author(s): Stefan Enroth, Claes Andersson, Robin Andersson, Claes Wadelius, Mats Gustafsson, Jan Komorowski
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2156-15-S1-S8

Analysis of the leaf methylomes of parents and their hybrids provides new insight into hybrid vigor in Populus deltoides
Cited by: 16
Author(s): Ming Gao, Qinjun Huang, Ying‐Hao Chu, Changjun Ding, Bingyu Zhang, Xiaohua Su
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pgen.1003292

Cell Reprogramming Requires Silencing of a Core Subset of Polycomb Targets
Cited by: 61
Author(s): Giulia Fragola, Pierre-Luc Germain, Pasquale Laise, Alessandro Cuomo, Alessandro Blasimme, Fridolin Groß, E. Signaroldi, Gabriele Bucci, Cesar Sommer, Giancarlo Pruneri, Giovanni Mazzarol, Tiziana Bonaldi, Gustavo Mostoslavsky, Stefano Casola, Giuseppe Testa
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pgen.1005622

Disproportionate Contributions of Select Genomic Compartments and Cell Types to Genetic Risk for Coronary Artery Disease
Cited by: 70
Author(s): Hong-Hee Won, Pradeep Natarajan, Amanda Dobbyn, Daniel M. Jordan, Panos Roussos, Kasper Lage, Soumya Raychaudhuri, Eli A. Stahl, Ron Do
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pgen.1005202

Characterization of TCF21 Downstream Target Regions Identifies a Transcriptional Network Linking Multiple Independent Coronary Artery Disease Loci
Cited by: 41
Author(s): Olga V. Sazonova, Yuqi Zhao, Sylvia Nürnberg, Clint L. Miller, Milos Pjanic, Victor G. Castano, Juyong Brian Kim, Elias Salfati, Anshul Kundaje, Gill Bejerano, Themistocles L. Assimes, Xia Yang, Thomas Quertermous
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pgen.1004018

Clustering of Tissue-Specific Sub-TADs Accompanies the Regulation of HoxA Genes in Developing Limbs
Cited by: 160
Author(s): Soizik Berlivet, Denis Paquette, Annie Dumouchel, David Langlais, Josée Dostie, Marie Kmita
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pgen.1006600

TEAD transcription factors are required for normal primary myoblast differentiation in vitro and muscle regeneration in vivo
Cited by: 53
Author(s): Shilpy Joshi, Guillaume Davidson, Stéphanie Le Gras, Shuichi Watanabe, Thomas Braun, Gabrielle Mengus, Irwin Davidson
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pgen.1007660

FGF-induced Pea3 transcription factors program the genetic landscape for cell fate determination
Cited by: 15
Author(s): Ankur Garg, Md. Abdul Hannan, Qian Wang, Tamica N. Collins, Siying Teng, Mukesh Bansal, Jian Zhong, Keli Xu, Xin Zhang
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pgen.1008597

Skp, Cullin, F-box (SCF)-Met30 and SCF-Cdc4-Mediated Proteolysis of CENP-A Prevents Mislocalization of CENP-A for Chromosomal Stability in Budding Yeast
Cited by: 26
Author(s): Wei Chun Au, Tianyi Zhang, Prashant Mishra, Jessica R. Eisenstatt, Robert L. Walker, Josefina Ocampo, Anthony R. Dawson, Jack Warren, Michael Costanzo, Anastasia Baryshnikova, Karin Flick, David Clark, Paul S. Meltzer, Richard E. Baker, Chad L. Myers, Charles Boone, Peter Kaiser, Munira A. Basrai
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pgen.1002829

GRHL3/GET1 and Trithorax Group Members Collaborate to Activate the Epidermal Progenitor Differentiation Program
Cited by: 77
Author(s): Amelia Soto Hopkin, William Gordon, Rachel Herndon Klein, Francisco Espitia, Kenneth Daily, Michael Zeller, Pierre Baldi, Bogi Andersen
Software Mentions: 1
Published: over 12 years ago

10.1155/2020/4384696

ChIP-seq Profiling Identifies Histone Deacetylase 2 Targeting Genes Involved in Immune and Inflammatory Regulation Induced by Calcitonin Gene-Related Peptide in Microglial Cells
Cited by: 7
Author(s): Xingjing Guo, Dan Chen, Shuhong An, Zhaojin Wang
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pgen.1007797

Genome-wide identification of RETINOBLASTOMA RELATED 1 binding sites in Arabidopsis reveals novel DNA damage regulators
Cited by: 41
Author(s): Daniel Bouyer, Maren Heese, Po‐Yu Chen, Hirofumi Harashima, François Roudier, Christian Grüttner, Arp Schnittger
Software Mentions: 1
Published: almost 6 years ago

Ecosyste.ms: Papers

Projects: pypi: MACS

Papers Mentioning MACS 1,233